Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035859.t1 | XP_024632961.1 | 87.6 | 290 | 28 | 1 | 1 | 282 | 81 | 370 | 6.20E-145 | 523.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035859.t1 | Q9SZL8 | 30.5 | 275 | 178 | 3 | 6 | 280 | 104 | 365 | 3.8e-34 | 146.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035859.t1 | A0A2Z6PJC0 | 84.4 | 282 | 44 | 0 | 1 | 282 | 1 | 282 | 3.1e-138 | 500.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene035859.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035859.t1 | MTR_0558s0020 | 87.879 | 231 | 28 | 0 | 1 | 231 | 66 | 296 | 3.69e-156 | 437 |
MS.gene035859.t1 | MTR_6g090505 | 83.544 | 237 | 39 | 0 | 1 | 237 | 1 | 237 | 2.21e-148 | 420 |
MS.gene035859.t1 | MTR_1g083640 | 89.216 | 204 | 22 | 0 | 1 | 204 | 81 | 284 | 4.12e-139 | 394 |
MS.gene035859.t1 | MTR_8g446020 | 78.947 | 228 | 48 | 0 | 4 | 231 | 29 | 256 | 6.42e-134 | 379 |
MS.gene035859.t1 | MTR_2g014100 | 86.628 | 172 | 23 | 0 | 1 | 172 | 74 | 245 | 1.00e-110 | 320 |
MS.gene035859.t1 | MTR_0337s0040 | 76.684 | 193 | 45 | 0 | 4 | 196 | 30 | 222 | 4.60e-108 | 313 |
MS.gene035859.t1 | MTR_1g055240 | 87.324 | 142 | 18 | 0 | 27 | 168 | 3 | 144 | 1.04e-89 | 263 |
MS.gene035859.t1 | MTR_0019s0290 | 81.579 | 152 | 28 | 0 | 18 | 169 | 9 | 160 | 7.59e-89 | 261 |
MS.gene035859.t1 | MTR_3g008240 | 85.507 | 138 | 20 | 0 | 1 | 138 | 66 | 203 | 3.23e-83 | 249 |
MS.gene035859.t1 | MTR_4g040430 | 84.058 | 138 | 18 | 1 | 1 | 138 | 65 | 198 | 6.96e-81 | 243 |
MS.gene035859.t1 | MTR_5g071590 | 79.612 | 103 | 21 | 0 | 1 | 103 | 78 | 180 | 3.87e-58 | 184 |
MS.gene035859.t1 | MTR_6g051425 | 34.454 | 238 | 144 | 3 | 21 | 258 | 64 | 289 | 2.99e-39 | 140 |
MS.gene035859.t1 | MTR_1281s0010 | 79.365 | 63 | 13 | 0 | 1 | 63 | 47 | 109 | 1.24e-29 | 108 |
MS.gene035859.t1 | MTR_1g070355 | 25.869 | 259 | 173 | 5 | 21 | 276 | 119 | 361 | 1.20e-16 | 80.1 |
MS.gene035859.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 195 | 230 | 14 | 49 | 2.46e-14 | 67.0 |
MS.gene035859.t1 | MTR_0402s0040 | 26.000 | 150 | 96 | 3 | 20 | 169 | 71 | 205 | 1.03e-13 | 71.2 |
MS.gene035859.t1 | MTR_4g035820 | 25.105 | 239 | 157 | 8 | 16 | 235 | 89 | 324 | 2.57e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035859.t1 | AT4G38180 | 32.061 | 262 | 165 | 3 | 20 | 281 | 118 | 366 | 2.39e-41 | 152 |
MS.gene035859.t1 | AT2G27110 | 30.180 | 222 | 138 | 4 | 62 | 281 | 107 | 313 | 1.73e-28 | 115 |
MS.gene035859.t1 | AT2G27110 | 30.180 | 222 | 138 | 4 | 62 | 281 | 107 | 313 | 1.73e-28 | 115 |
MS.gene035859.t1 | AT4G15090 | 31.250 | 224 | 151 | 3 | 59 | 281 | 121 | 342 | 3.91e-28 | 114 |
MS.gene035859.t1 | AT4G15090 | 31.250 | 224 | 151 | 3 | 59 | 281 | 121 | 342 | 3.91e-28 | 114 |
MS.gene035859.t1 | AT4G15090 | 31.250 | 224 | 151 | 3 | 59 | 281 | 121 | 342 | 3.91e-28 | 114 |
MS.gene035859.t1 | AT4G15090 | 31.250 | 224 | 151 | 3 | 59 | 281 | 121 | 342 | 3.91e-28 | 114 |
MS.gene035859.t1 | AT4G15090 | 31.250 | 224 | 151 | 3 | 59 | 281 | 121 | 342 | 3.91e-28 | 114 |
MS.gene035859.t1 | AT3G06250 | 27.757 | 263 | 134 | 5 | 20 | 281 | 235 | 442 | 3.94e-28 | 114 |
MS.gene035859.t1 | AT3G06250 | 27.757 | 263 | 134 | 5 | 20 | 281 | 235 | 442 | 3.94e-28 | 114 |
MS.gene035859.t1 | AT3G06250 | 27.757 | 263 | 134 | 5 | 20 | 281 | 235 | 442 | 3.94e-28 | 114 |
MS.gene035859.t1 | AT5G28530 | 27.083 | 288 | 185 | 5 | 5 | 280 | 84 | 358 | 4.45e-28 | 113 |
MS.gene035859.t1 | AT5G28530 | 27.083 | 288 | 185 | 5 | 5 | 280 | 84 | 358 | 4.69e-28 | 113 |
MS.gene035859.t1 | AT5G28530 | 27.083 | 288 | 185 | 5 | 5 | 280 | 84 | 358 | 4.69e-28 | 113 |
MS.gene035859.t1 | AT2G27110 | 37.594 | 133 | 83 | 0 | 149 | 281 | 36 | 168 | 1.78e-27 | 112 |
MS.gene035859.t1 | AT1G76320 | 26.415 | 265 | 167 | 5 | 19 | 281 | 41 | 279 | 4.51e-25 | 105 |
MS.gene035859.t1 | AT1G76320 | 26.415 | 265 | 167 | 5 | 19 | 281 | 41 | 279 | 4.85e-25 | 105 |
MS.gene035859.t1 | AT1G76320 | 26.415 | 265 | 167 | 5 | 19 | 281 | 41 | 279 | 5.28e-25 | 104 |
MS.gene035859.t1 | AT1G76320 | 26.415 | 265 | 167 | 5 | 19 | 281 | 41 | 279 | 5.28e-25 | 104 |
MS.gene035859.t1 | AT1G10240 | 27.386 | 241 | 167 | 4 | 46 | 281 | 107 | 344 | 2.76e-24 | 102 |
MS.gene035859.t1 | AT1G10240 | 27.386 | 241 | 167 | 4 | 46 | 281 | 107 | 344 | 2.76e-24 | 102 |
MS.gene035859.t1 | AT2G32250 | 26.882 | 279 | 142 | 6 | 5 | 281 | 27 | 245 | 3.04e-23 | 99.8 |
MS.gene035859.t1 | AT2G32250 | 26.882 | 279 | 142 | 6 | 5 | 281 | 27 | 245 | 3.10e-23 | 99.8 |
MS.gene035859.t1 | AT2G32250 | 26.882 | 279 | 142 | 6 | 5 | 281 | 68 | 286 | 3.15e-23 | 99.8 |
MS.gene035859.t1 | AT2G32250 | 26.882 | 279 | 142 | 6 | 5 | 281 | 68 | 286 | 3.24e-23 | 99.8 |
MS.gene035859.t1 | AT2G32250 | 26.882 | 279 | 142 | 6 | 5 | 281 | 68 | 286 | 3.24e-23 | 99.8 |
MS.gene035859.t1 | AT2G32250 | 26.882 | 279 | 142 | 6 | 5 | 281 | 68 | 286 | 3.24e-23 | 99.8 |
MS.gene035859.t1 | AT2G32250 | 26.882 | 279 | 142 | 6 | 5 | 281 | 68 | 286 | 3.33e-23 | 99.8 |
MS.gene035859.t1 | AT2G32250 | 26.882 | 279 | 142 | 6 | 5 | 281 | 68 | 286 | 3.33e-23 | 99.8 |
MS.gene035859.t1 | AT4G38170 | 40.541 | 111 | 61 | 2 | 171 | 280 | 24 | 130 | 3.40e-23 | 99.4 |
MS.gene035859.t1 | AT5G18960 | 26.038 | 265 | 139 | 7 | 20 | 281 | 256 | 466 | 4.61e-23 | 99.4 |
MS.gene035859.t1 | AT5G18960 | 26.038 | 265 | 139 | 7 | 20 | 281 | 256 | 466 | 4.61e-23 | 99.4 |
MS.gene035859.t1 | AT1G80010 | 26.712 | 292 | 170 | 10 | 4 | 282 | 129 | 389 | 9.44e-22 | 95.5 |
MS.gene035859.t1 | AT3G22170 | 23.693 | 287 | 172 | 6 | 5 | 280 | 100 | 350 | 4.07e-20 | 90.5 |
MS.gene035859.t1 | AT3G22170 | 23.693 | 287 | 172 | 6 | 5 | 280 | 100 | 350 | 4.07e-20 | 90.5 |
MS.gene035859.t1 | AT1G52520 | 24.199 | 281 | 185 | 6 | 2 | 282 | 112 | 364 | 5.49e-18 | 84.3 |
MS.gene035859.t1 | AT4G19990 | 33.333 | 126 | 83 | 1 | 155 | 279 | 106 | 231 | 3.02e-15 | 76.3 |
MS.gene035859.t1 | AT4G19990 | 33.333 | 126 | 83 | 1 | 155 | 279 | 163 | 288 | 3.08e-15 | 76.3 |
MS.gene035859.t1 | AT4G19990 | 33.333 | 126 | 83 | 1 | 155 | 279 | 163 | 288 | 3.08e-15 | 76.3 |
MS.gene035859.t1 | AT4G19990 | 33.333 | 126 | 83 | 1 | 155 | 279 | 163 | 288 | 3.13e-15 | 76.3 |
MS.gene035859.t1 | AT4G19990 | 33.333 | 126 | 83 | 1 | 155 | 279 | 163 | 288 | 3.14e-15 | 76.3 |
MS.gene035859.t1 | AT4G19990 | 33.333 | 126 | 83 | 1 | 155 | 279 | 163 | 288 | 3.14e-15 | 76.3 |
MS.gene035859.t1 | AT4G19990 | 33.333 | 126 | 83 | 1 | 155 | 279 | 177 | 302 | 3.25e-15 | 75.9 |
Find 41 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 5.2:+54164378 | MS.gene035859:intron |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.2:+54163865 | MS.gene035859:CDS |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5.2:+54164411 | MS.gene035859:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5.2:-54164505 | None:intergenic |
ACCAGCTTGGTCTGTGTATA+TGG | 0.305801 | 5.2:-54164523 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.2:-54163915 | None:intergenic |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.2:+54163922 | MS.gene035859:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.2:+54163914 | MS.gene035859:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.2:+54163562 | MS.gene035859:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.2:+54163444 | MS.gene035859:CDS |
TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5.2:+54163476 | MS.gene035859:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.446650 | 5.2:-54164516 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.2:+54163427 | MS.gene035859:CDS |
CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5.2:+54163310 | MS.gene035859:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5.2:+54163592 | MS.gene035859:CDS |
CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 5.2:-54163532 | None:intergenic |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5.2:+54163276 | MS.gene035859:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5.2:+54163637 | MS.gene035859:CDS |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.2:-54163421 | None:intergenic |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5.2:+54163705 | MS.gene035859:CDS |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5.2:+54163270 | MS.gene035859:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.2:-54164391 | None:intergenic |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.2:+54163718 | MS.gene035859:CDS |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5.2:+54163624 | MS.gene035859:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5.2:-54163676 | None:intergenic |
TGTCTTCTACAGCATCAACT+TGG | 0.523056 | 5.2:-54163810 | None:intergenic |
TGTCTATAAGATATATAGGT+GGG | 0.523740 | 5.2:+54163480 | MS.gene035859:CDS |
TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5.2:+54163321 | MS.gene035859:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.2:+54163322 | MS.gene035859:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 5.2:-54163520 | None:intergenic |
ACTTCAACAACGCACCAGCT+TGG | 0.558588 | 5.2:-54164536 | None:intergenic |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.2:+54163772 | MS.gene035859:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5.2:+54163640 | MS.gene035859:CDS |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5.2:+54163631 | MS.gene035859:CDS |
ACCATATACACAGACCAAGC+TGG | 0.590176 | 5.2:+54164522 | MS.gene035859:CDS |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5.2:+54163711 | MS.gene035859:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5.2:+54163625 | MS.gene035859:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5.2:+54163714 | MS.gene035859:CDS |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5.2:+54163645 | MS.gene035859:CDS |
AGAACTAGACTGTCACATGT+TGG | 0.634703 | 5.2:-54163370 | None:intergenic |
ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5.2:+54163479 | MS.gene035859:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAATGTTTATATTGATTGA+AGG | + | chr5.2:54164069-54164088 | MS.gene035859:intron | 15.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr5.2:54163270-54163289 | MS.gene035859:CDS | 20.0% |
!! | TGAATGTCTATAAGATATAT+AGG | + | chr5.2:54163476-54163495 | MS.gene035859:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr5.2:54164097-54164116 | MS.gene035859:intron | 20.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr5.2:54163276-54163295 | MS.gene035859:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr5.2:54163914-54163933 | MS.gene035859:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr5.2:54163940-54163959 | None:intergenic | 25.0% |
! | ATGTCTATAAGATATATAGG+TGG | + | chr5.2:54163479-54163498 | MS.gene035859:CDS | 25.0% |
! | ATTCTATTTACACAACACAA+TGG | + | chr5.2:54164308-54164327 | MS.gene035859:intron | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr5.2:54163987-54164006 | MS.gene035859:intron | 25.0% |
! | TGTCTATAAGATATATAGGT+GGG | + | chr5.2:54163480-54163499 | MS.gene035859:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr5.2:54164089-54164108 | MS.gene035859:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr5.2:54164349-54164368 | MS.gene035859:intron | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | + | chr5.2:54163827-54163846 | MS.gene035859:CDS | 25.0% |
!!! | AGACATAGCTAGTATTTTTT+GGG | + | chr5.2:54163828-54163847 | MS.gene035859:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr5.2:54163266-54163285 | None:intergenic | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr5.2:54164096-54164115 | MS.gene035859:intron | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr5.2:54163592-54163611 | MS.gene035859:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr5.2:54164160-54164179 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr5.2:54163322-54163341 | MS.gene035859:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr5.2:54163922-54163941 | MS.gene035859:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | + | chr5.2:54163625-54163644 | MS.gene035859:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr5.2:54164394-54164413 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr5.2:54163865-54163884 | MS.gene035859:CDS | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr5.2:54164026-54164045 | MS.gene035859:intron | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr5.2:54163918-54163937 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr5.2:54163411-54163430 | MS.gene035859:CDS | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr5.2:54163321-54163340 | MS.gene035859:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr5.2:54163793-54163812 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr5.2:54163679-54163698 | None:intergenic | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr5.2:54163523-54163542 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr5.2:54163444-54163463 | MS.gene035859:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr5.2:54163669-54163688 | MS.gene035859:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr5.2:54164508-54164527 | None:intergenic | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr5.2:54164001-54164020 | MS.gene035859:intron | 30.0% |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr5.2:54163562-54163581 | MS.gene035859:CDS | 35.0% | |
CGTTATGCTTGTAACAAAGA+AGG | + | chr5.2:54163310-54163329 | MS.gene035859:CDS | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr5.2:54163410-54163429 | MS.gene035859:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr5.2:54163405-54163424 | MS.gene035859:CDS | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr5.2:54163624-54163643 | MS.gene035859:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr5.2:54163347-54163366 | MS.gene035859:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr5.2:54163705-54163724 | MS.gene035859:CDS | 35.0% | |
TGTACAGAGCACAAATTCTA+AGG | - | chr5.2:54164136-54164155 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr5.2:54164411-54164430 | MS.gene035859:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr5.2:54164007-54164026 | MS.gene035859:intron | 35.0% |
!! | CACAAATTCTAAGGCAAGAT+AGG | - | chr5.2:54164127-54164146 | None:intergenic | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr5.2:54164454-54164473 | MS.gene035859:CDS | 35.0% |
AGAACTAGACTGTCACATGT+TGG | - | chr5.2:54163373-54163392 | None:intergenic | 40.0% | |
TACATTTCAGCTGCCTTTCT+TGG | + | chr5.2:54164378-54164397 | MS.gene035859:intron | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr5.2:54164519-54164538 | None:intergenic | 40.0% | |
TGTCTTCTACAGCATCAACT+TGG | - | chr5.2:54163813-54163832 | None:intergenic | 40.0% | |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr5.2:54163361-54163380 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr5.2:54163631-54163650 | MS.gene035859:CDS | 40.0% |
!!! | GCTAGTATTTTTTGGGCAGA+TGG | + | chr5.2:54163835-54163854 | MS.gene035859:CDS | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | + | chr5.2:54163714-54163733 | MS.gene035859:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr5.2:54163772-54163791 | MS.gene035859:CDS | 45.0% | |
ACCTATGCTCTTTGCATAGC+TGG | - | chr5.2:54164258-54164277 | None:intergenic | 45.0% | |
ATTTGTGCTCTGTACAGCCA+TGG | + | chr5.2:54164140-54164159 | MS.gene035859:intron | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr5.2:54163415-54163434 | MS.gene035859:CDS | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr5.2:54163711-54163730 | MS.gene035859:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr5.2:54163424-54163443 | None:intergenic | 45.0% | |
! | TCCAGCTATGCAAAGAGCAT+AGG | + | chr5.2:54164254-54164273 | MS.gene035859:intron | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5.2:54163427-54163446 | MS.gene035859:CDS | 45.0% |
CTCAAGTAGCGCAAATGCTC+TGG | - | chr5.2:54163535-54163554 | None:intergenic | 50.0% | |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr5.2:54163637-54163656 | MS.gene035859:CDS | 50.0% |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr5.2:54163718-54163737 | MS.gene035859:CDS | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr5.2:54163640-54163659 | MS.gene035859:CDS | 55.0% |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr5.2:54163645-54163664 | MS.gene035859:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 54163253 | 54164543 | 54163253 | ID=MS.gene035859 |
chr5.2 | mRNA | 54163253 | 54164543 | 54163253 | ID=MS.gene035859.t1;Parent=MS.gene035859 |
chr5.2 | exon | 54163253 | 54163943 | 54163253 | ID=MS.gene035859.t1.exon1;Parent=MS.gene035859.t1 |
chr5.2 | CDS | 54163253 | 54163943 | 54163253 | ID=cds.MS.gene035859.t1;Parent=MS.gene035859.t1 |
chr5.2 | exon | 54164388 | 54164543 | 54164388 | ID=MS.gene035859.t1.exon2;Parent=MS.gene035859.t1 |
chr5.2 | CDS | 54164388 | 54164543 | 54164388 | ID=cds.MS.gene035859.t1;Parent=MS.gene035859.t1 |
Gene Sequence |
Protein sequence |