Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035864.t1 | RHN62980.1 | 97.4 | 232 | 6 | 0 | 1 | 232 | 1 | 232 | 2.50E-136 | 494.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035864.t1 | Q8VWG3 | 80.5 | 154 | 30 | 0 | 72 | 225 | 130 | 283 | 6.4e-80 | 298.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035864.t1 | A0A396IBK2 | 97.4 | 232 | 6 | 0 | 1 | 232 | 1 | 232 | 1.8e-136 | 494.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene035864.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035864.t1 | MTR_1g093095 | 67.816 | 174 | 51 | 2 | 61 | 229 | 87 | 260 | 4.67e-85 | 254 |
MS.gene035864.t1 | MTR_2g090745 | 34.783 | 161 | 95 | 5 | 59 | 218 | 8 | 159 | 5.39e-21 | 90.9 |
MS.gene035864.t1 | MTR_1g112270 | 33.540 | 161 | 95 | 5 | 61 | 218 | 56 | 207 | 4.67e-20 | 88.6 |
MS.gene035864.t1 | MTR_4g059870 | 33.775 | 151 | 91 | 4 | 69 | 218 | 49 | 191 | 5.53e-20 | 88.2 |
MS.gene035864.t1 | MTR_2g093960 | 35.099 | 151 | 89 | 4 | 69 | 218 | 43 | 185 | 1.19e-19 | 87.0 |
MS.gene035864.t1 | MTR_1g112270 | 33.775 | 151 | 90 | 4 | 69 | 218 | 55 | 196 | 2.36e-19 | 86.7 |
MS.gene035864.t1 | MTR_1g094115 | 34.868 | 152 | 87 | 5 | 69 | 218 | 58 | 199 | 5.93e-19 | 85.5 |
MS.gene035864.t1 | MTR_8g017210 | 32.911 | 158 | 95 | 5 | 63 | 218 | 66 | 214 | 7.18e-19 | 85.1 |
MS.gene035864.t1 | MTR_1g016010 | 32.895 | 152 | 91 | 5 | 69 | 218 | 52 | 194 | 1.42e-18 | 84.0 |
MS.gene035864.t1 | MTR_2g099990 | 32.911 | 158 | 95 | 5 | 63 | 218 | 50 | 198 | 6.15e-18 | 82.4 |
MS.gene035864.t1 | MTR_1g094115 | 37.500 | 136 | 73 | 5 | 85 | 218 | 57 | 182 | 6.94e-18 | 82.4 |
MS.gene035864.t1 | MTR_2g099990 | 33.333 | 138 | 82 | 4 | 82 | 218 | 1 | 129 | 1.45e-16 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035864.t1 | AT1G34790 | 66.010 | 203 | 54 | 2 | 40 | 227 | 83 | 285 | 2.54e-96 | 283 |
MS.gene035864.t1 | AT3G57670 | 69.832 | 179 | 54 | 0 | 47 | 225 | 177 | 355 | 2.90e-91 | 273 |
MS.gene035864.t1 | AT1G51220 | 76.250 | 160 | 38 | 0 | 72 | 231 | 163 | 322 | 2.70e-90 | 270 |
MS.gene035864.t1 | AT3G20880 | 59.091 | 220 | 55 | 2 | 39 | 224 | 175 | 393 | 1.55e-89 | 270 |
MS.gene035864.t1 | AT1G13290 | 64.615 | 195 | 59 | 4 | 40 | 228 | 54 | 244 | 6.71e-87 | 259 |
MS.gene035864.t1 | AT1G08290 | 53.333 | 255 | 75 | 5 | 6 | 224 | 72 | 318 | 4.16e-86 | 259 |
MS.gene035864.t1 | AT1G34370 | 40.113 | 177 | 95 | 6 | 57 | 224 | 3 | 177 | 1.32e-30 | 114 |
MS.gene035864.t1 | AT1G34370 | 38.000 | 200 | 113 | 6 | 34 | 224 | 190 | 387 | 3.16e-30 | 117 |
MS.gene035864.t1 | AT1G34370 | 38.000 | 200 | 113 | 6 | 34 | 224 | 190 | 387 | 3.16e-30 | 117 |
MS.gene035864.t1 | AT5G22890 | 37.580 | 157 | 89 | 5 | 80 | 229 | 211 | 365 | 1.50e-24 | 100 |
MS.gene035864.t1 | AT5G03150 | 34.437 | 151 | 90 | 4 | 69 | 218 | 64 | 206 | 2.81e-21 | 92.0 |
MS.gene035864.t1 | AT1G14580 | 31.707 | 205 | 123 | 6 | 15 | 218 | 17 | 205 | 3.74e-20 | 89.0 |
MS.gene035864.t1 | AT1G14580 | 31.707 | 205 | 123 | 6 | 15 | 218 | 17 | 205 | 3.74e-20 | 89.0 |
MS.gene035864.t1 | AT1G14580 | 31.707 | 205 | 123 | 6 | 15 | 218 | 31 | 219 | 3.76e-20 | 89.0 |
MS.gene035864.t1 | AT5G44160 | 32.044 | 181 | 103 | 5 | 49 | 218 | 18 | 189 | 4.75e-20 | 88.6 |
MS.gene035864.t1 | AT5G44160 | 34.437 | 151 | 89 | 4 | 69 | 218 | 9 | 150 | 1.09e-19 | 87.4 |
MS.gene035864.t1 | AT5G66730 | 33.553 | 152 | 89 | 5 | 69 | 218 | 43 | 184 | 1.61e-19 | 87.0 |
MS.gene035864.t1 | AT2G02080 | 33.155 | 187 | 110 | 7 | 34 | 218 | 33 | 206 | 1.74e-19 | 87.0 |
MS.gene035864.t1 | AT2G02080 | 33.155 | 187 | 110 | 7 | 34 | 218 | 33 | 206 | 1.74e-19 | 87.0 |
MS.gene035864.t1 | AT2G02080 | 33.155 | 187 | 110 | 7 | 34 | 218 | 33 | 206 | 1.74e-19 | 87.0 |
MS.gene035864.t1 | AT2G02080 | 33.155 | 187 | 110 | 7 | 34 | 218 | 33 | 206 | 1.74e-19 | 87.0 |
MS.gene035864.t1 | AT5G60470 | 33.929 | 168 | 100 | 5 | 49 | 214 | 32 | 190 | 2.44e-19 | 86.3 |
MS.gene035864.t1 | AT5G60470 | 33.929 | 168 | 100 | 5 | 49 | 214 | 36 | 194 | 2.55e-19 | 86.3 |
MS.gene035864.t1 | AT5G60470 | 35.374 | 147 | 87 | 3 | 69 | 214 | 46 | 185 | 2.92e-19 | 86.3 |
MS.gene035864.t1 | AT1G55110 | 33.548 | 155 | 92 | 5 | 66 | 218 | 71 | 216 | 3.63e-19 | 85.9 |
MS.gene035864.t1 | AT1G55110 | 33.548 | 155 | 92 | 5 | 66 | 218 | 71 | 216 | 3.63e-19 | 85.9 |
MS.gene035864.t1 | AT1G55110 | 33.548 | 155 | 92 | 5 | 66 | 218 | 71 | 216 | 3.63e-19 | 85.9 |
MS.gene035864.t1 | AT2G02070 | 34.932 | 146 | 85 | 4 | 74 | 218 | 68 | 204 | 4.08e-19 | 85.9 |
MS.gene035864.t1 | AT2G02070 | 34.932 | 146 | 85 | 4 | 74 | 218 | 68 | 204 | 4.08e-19 | 85.9 |
MS.gene035864.t1 | AT3G45260 | 35.443 | 158 | 92 | 5 | 63 | 218 | 43 | 192 | 7.28e-19 | 85.1 |
MS.gene035864.t1 | AT3G45260 | 35.443 | 158 | 92 | 5 | 63 | 218 | 43 | 192 | 7.28e-19 | 85.1 |
MS.gene035864.t1 | AT1G03840 | 33.544 | 158 | 94 | 5 | 63 | 218 | 45 | 193 | 9.84e-19 | 84.7 |
MS.gene035864.t1 | AT1G03840 | 33.121 | 157 | 94 | 5 | 63 | 218 | 45 | 191 | 1.22e-18 | 84.7 |
MS.gene035864.t1 | AT2G02080 | 36.842 | 133 | 74 | 4 | 87 | 218 | 6 | 129 | 2.83e-18 | 83.2 |
MS.gene035864.t1 | AT2G02080 | 36.842 | 133 | 74 | 4 | 87 | 218 | 6 | 129 | 2.83e-18 | 83.2 |
MS.gene035864.t1 | AT3G50700 | 30.939 | 181 | 112 | 6 | 42 | 218 | 15 | 186 | 8.58e-18 | 82.0 |
MS.gene035864.t1 | AT4G02670 | 32.468 | 154 | 95 | 4 | 66 | 218 | 61 | 206 | 1.10e-17 | 81.3 |
MS.gene035864.t1 | AT4G02670 | 33.117 | 154 | 94 | 4 | 66 | 218 | 63 | 208 | 1.13e-17 | 81.3 |
MS.gene035864.t1 | AT3G13810 | 31.788 | 151 | 94 | 4 | 69 | 218 | 81 | 223 | 2.07e-17 | 80.9 |
MS.gene035864.t1 | AT3G13810 | 31.788 | 151 | 94 | 4 | 69 | 218 | 81 | 223 | 2.07e-17 | 80.9 |
MS.gene035864.t1 | AT3G13810 | 31.818 | 154 | 96 | 4 | 66 | 218 | 73 | 218 | 2.46e-17 | 80.9 |
MS.gene035864.t1 | AT3G13810 | 31.818 | 154 | 96 | 4 | 66 | 218 | 59 | 204 | 2.48e-17 | 80.9 |
MS.gene035864.t1 | AT3G13810 | 31.788 | 151 | 94 | 4 | 69 | 218 | 82 | 224 | 3.18e-17 | 80.5 |
MS.gene035864.t1 | AT3G13810 | 31.788 | 151 | 94 | 4 | 69 | 218 | 68 | 210 | 3.24e-17 | 80.5 |
Find 47 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCATCTGGTGGGATTTA+AGG | 0.074753 | 5.2:+54100791 | MS.gene035864:CDS |
CTAAGCCATTGAAGGATTTC+AGG | 0.257197 | 5.2:+54100558 | MS.gene035864:CDS |
AGTGAATCACCAAATGAAAA+TGG | 0.272733 | 5.2:+54099779 | MS.gene035864:CDS |
CCACCAGATGAAGAAGAAAA+AGG | 0.280585 | 5.2:-54100782 | None:intergenic |
ATCAAGTTCCTAACAATTAC+TGG | 0.290004 | 5.2:+54099819 | MS.gene035864:CDS |
CATATCAAAGCATTTGGATT+TGG | 0.298690 | 5.2:+54100752 | MS.gene035864:CDS |
AAGGATCATATCAAAGCATT+TGG | 0.345398 | 5.2:+54100746 | MS.gene035864:CDS |
GTTGGTATCCAGTAATTGTT+AGG | 0.349260 | 5.2:-54099827 | None:intergenic |
GGTGATTCACTTGAATTGTT+AGG | 0.354362 | 5.2:-54099767 | None:intergenic |
CAAACATAAGAGGTCACTTA+AGG | 0.365934 | 5.2:+54100727 | MS.gene035864:CDS |
TCCTTCAATGGCTTAGCTCT+TGG | 0.384210 | 5.2:-54100551 | None:intergenic |
CCATGTTATTGTTGTTCAAA+TGG | 0.386271 | 5.2:+54100506 | MS.gene035864:CDS |
CAATCGTTACAACAACCTTC+AGG | 0.392156 | 5.2:+54099910 | MS.gene035864:CDS |
TAATTGTTAGGAACTTGATT+TGG | 0.405327 | 5.2:-54099815 | None:intergenic |
GTTAGGAAGGCCTATTTGTA+AGG | 0.411385 | 5.2:-54099750 | None:intergenic |
CCTTTGCTAAGTAGCTTCCT+AGG | 0.417085 | 5.2:+54099650 | MS.gene035864:CDS |
GTCACAGTGGCCTTACAAAT+AGG | 0.422585 | 5.2:+54099740 | MS.gene035864:CDS |
GTTCAGATTTCAAACATAAG+AGG | 0.434145 | 5.2:+54100717 | MS.gene035864:CDS |
ACTCAAGAACAGATTCTCAT+TGG | 0.435131 | 5.2:+54099848 | MS.gene035864:CDS |
TCGAAAATGTGGGAAGCCAT+TGG | 0.482738 | 5.2:+54100631 | MS.gene035864:CDS |
CAATCACCTTTCACTGCCAA+TGG | 0.484406 | 5.2:-54100647 | None:intergenic |
GGTCTAACAATGGTCGTGGA+TGG | 0.504798 | 5.2:-54100481 | None:intergenic |
CATTGGCAGTGAAAGGTGAT+TGG | 0.508045 | 5.2:+54100648 | MS.gene035864:CDS |
TCCAAGAGCTAAGCCATTGA+AGG | 0.510873 | 5.2:+54100550 | MS.gene035864:CDS |
ATGAGAATCTGTTCTTGAGT+TGG | 0.521544 | 5.2:-54099845 | None:intergenic |
ACGTTTACTTGTCGAAAATG+TGG | 0.532025 | 5.2:+54100620 | MS.gene035864:CDS |
AGTGTCCTGAAATCCTTCAA+TGG | 0.536755 | 5.2:-54100563 | None:intergenic |
GTCTAACAATGGTCGTGGAT+GGG | 0.548133 | 5.2:-54100480 | None:intergenic |
AAGCTACTTAGCAAAGGTAG+AGG | 0.560479 | 5.2:-54099644 | None:intergenic |
ATTCACTTGAATTGTTAGGA+AGG | 0.564830 | 5.2:-54099763 | None:intergenic |
GGTAGGTCTAACAATGGTCG+TGG | 0.569196 | 5.2:-54100485 | None:intergenic |
CGTTTACTTGTCGAAAATGT+GGG | 0.576502 | 5.2:+54100621 | MS.gene035864:CDS |
AAGCGTTGGCTTTGTATCTG+TGG | 0.585573 | 5.2:+54100695 | MS.gene035864:CDS |
TTTGGTGATAGATGCATATG+TGG | 0.589947 | 5.2:+54100411 | MS.gene035864:intron |
TTGAACAACAATAACATGGT+AGG | 0.599315 | 5.2:-54100502 | None:intergenic |
GTTCTTGTGAAGTTGAACCT+AGG | 0.608229 | 5.2:-54099667 | None:intergenic |
CCTAGGAAGCTACTTAGCAA+AGG | 0.615377 | 5.2:-54099650 | None:intergenic |
ACACACTACAAGAGAAAGCA+TGG | 0.621285 | 5.2:+54100590 | MS.gene035864:CDS |
CCATTTGAACAACAATAACA+TGG | 0.622921 | 5.2:-54100506 | None:intergenic |
TTGGTGATAGATGCATATGT+GGG | 0.631361 | 5.2:+54100412 | MS.gene035864:intron |
GGGAAGCCATTGGCAGTGAA+AGG | 0.634540 | 5.2:+54100641 | MS.gene035864:CDS |
ATCATGTTTCAATCAAGCTG+AGG | 0.648432 | 5.2:+54099715 | MS.gene035864:CDS |
CATGGTTCGCAGTATCGAAG+AGG | 0.675110 | 5.2:+54100437 | MS.gene035864:CDS |
TAACATGGTAGGTCTAACAA+TGG | 0.693527 | 5.2:-54100491 | None:intergenic |
TGGTGATAGATGCATATGTG+GGG | 0.723679 | 5.2:+54100413 | MS.gene035864:intron |
TCAAGCTGAGGATGTCACAG+TGG | 0.732110 | 5.2:+54099727 | MS.gene035864:CDS |
GGTGATAGATGCATATGTGG+GGG | 0.769392 | 5.2:+54100414 | MS.gene035864:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAAATATTGATTGCAATAA+GGG | - | chr5.2:54100291-54100310 | None:intergenic | 15.0% |
!!! | TTAAAATATTGATTGCAATA+AGG | - | chr5.2:54100292-54100311 | None:intergenic | 15.0% |
!! | ACCAAATTGAAAATATAATC+AGG | - | chr5.2:54100397-54100416 | None:intergenic | 20.0% |
!! | CCAAATTGAAAATATAATCA+GGG | - | chr5.2:54100396-54100415 | None:intergenic | 20.0% |
!! | TTTATTATTTGTGACTATCA+AGG | - | chr5.2:54100316-54100335 | None:intergenic | 20.0% |
! | AAACTTTAATTGAAGTTCCT+AGG | + | chr5.2:54100165-54100184 | MS.gene035864:intron | 25.0% |
! | AACTTTAATTGAAGTTCCTA+GGG | + | chr5.2:54100166-54100185 | MS.gene035864:intron | 25.0% |
! | AGTGATTCTCTATAATATCA+AGG | + | chr5.2:54100247-54100266 | MS.gene035864:intron | 25.0% |
! | TAATCTCTCCAAAAAAAAGA+AGG | + | chr5.2:54100040-54100059 | MS.gene035864:intron | 25.0% |
! | TAATTGTTAGGAACTTGATT+TGG | - | chr5.2:54099818-54099837 | None:intergenic | 25.0% |
!! | CCCTGATTATATTTTCAATT+TGG | + | chr5.2:54100393-54100412 | MS.gene035864:intron | 25.0% |
!! | GATTTATGACTTTCATTTTG+TGG | - | chr5.2:54099698-54099717 | None:intergenic | 25.0% |
!! | TTCACAAATCCATTTTCATT+TGG | - | chr5.2:54099791-54099810 | None:intergenic | 25.0% |
!!! | AGCATTTACCTTCTTTTTTT+TGG | - | chr5.2:54100051-54100070 | None:intergenic | 25.0% |
AATGCTAAGATCAGAAATCT+AGG | - | chr5.2:54100360-54100379 | None:intergenic | 30.0% | |
AGTGAATCACCAAATGAAAA+TGG | + | chr5.2:54099779-54099798 | MS.gene035864:CDS | 30.0% | |
ATCAAGTTCCTAACAATTAC+TGG | + | chr5.2:54099819-54099838 | MS.gene035864:CDS | 30.0% | |
ATTCACTTGAATTGTTAGGA+AGG | - | chr5.2:54099766-54099785 | None:intergenic | 30.0% | |
CCATTTGAACAACAATAACA+TGG | - | chr5.2:54100509-54100528 | None:intergenic | 30.0% | |
GTTCAGATTTCAAACATAAG+AGG | + | chr5.2:54100717-54100736 | MS.gene035864:CDS | 30.0% | |
TTGAACAACAATAACATGGT+AGG | - | chr5.2:54100505-54100524 | None:intergenic | 30.0% | |
! | AAGGATCATATCAAAGCATT+TGG | + | chr5.2:54100746-54100765 | MS.gene035864:CDS | 30.0% |
! | CATATCAAAGCATTTGGATT+TGG | + | chr5.2:54100752-54100771 | MS.gene035864:CDS | 30.0% |
! | CCATGTTATTGTTGTTCAAA+TGG | + | chr5.2:54100506-54100525 | MS.gene035864:CDS | 30.0% |
! | TGACTTTCATTTTGTGGTAA+AGG | - | chr5.2:54099692-54099711 | None:intergenic | 30.0% |
! | TGTAACGATTGAAAGTTTTG+AGG | - | chr5.2:54099901-54099920 | None:intergenic | 30.0% |
AAGAAAACTACTACACCTGA+AGG | - | chr5.2:54099928-54099947 | None:intergenic | 35.0% | |
ACGTTTACTTGTCGAAAATG+TGG | + | chr5.2:54100620-54100639 | MS.gene035864:CDS | 35.0% | |
ACTCAAGAACAGATTCTCAT+TGG | + | chr5.2:54099848-54099867 | MS.gene035864:CDS | 35.0% | |
AGAACTCATGAGAAAAACTG+TGG | + | chr5.2:54100671-54100690 | MS.gene035864:CDS | 35.0% | |
ATCATGTTTCAATCAAGCTG+AGG | + | chr5.2:54099715-54099734 | MS.gene035864:CDS | 35.0% | |
ATGAGAATCTGTTCTTGAGT+TGG | - | chr5.2:54099848-54099867 | None:intergenic | 35.0% | |
CAAACATAAGAGGTCACTTA+AGG | + | chr5.2:54100727-54100746 | MS.gene035864:CDS | 35.0% | |
CACCAGATGAAGAAGAAAAA+GGG | - | chr5.2:54100784-54100803 | None:intergenic | 35.0% | |
CATACAATCCTTGTCAAATC+TGG | + | chr5.2:54100136-54100155 | MS.gene035864:intron | 35.0% | |
CGTTTACTTGTCGAAAATGT+GGG | + | chr5.2:54100621-54100640 | MS.gene035864:CDS | 35.0% | |
GGTGATTCACTTGAATTGTT+AGG | - | chr5.2:54099770-54099789 | None:intergenic | 35.0% | |
GTTGGTATCCAGTAATTGTT+AGG | - | chr5.2:54099830-54099849 | None:intergenic | 35.0% | |
TAACATGGTAGGTCTAACAA+TGG | - | chr5.2:54100494-54100513 | None:intergenic | 35.0% | |
TTCATTGACCAGATTTGACA+AGG | - | chr5.2:54100147-54100166 | None:intergenic | 35.0% | |
! | ATTGAAGTTCCTAGGGTTTT+AGG | + | chr5.2:54100173-54100192 | MS.gene035864:intron | 35.0% |
! | CTTTTTCTTCTTCATCTGGT+GGG | + | chr5.2:54100783-54100802 | MS.gene035864:CDS | 35.0% |
! | TTGGTGATAGATGCATATGT+GGG | + | chr5.2:54100412-54100431 | MS.gene035864:intron | 35.0% |
! | TTTGGTGATAGATGCATATG+TGG | + | chr5.2:54100411-54100430 | MS.gene035864:intron | 35.0% |
!!! | TGAAAGTTTTGAGGCAAACT+GGG | - | chr5.2:54099892-54099911 | None:intergenic | 35.0% |
!!! | TTGAAAGTTTTGAGGCAAAC+TGG | - | chr5.2:54099893-54099912 | None:intergenic | 35.0% |
AAGCTACTTAGCAAAGGTAG+AGG | - | chr5.2:54099647-54099666 | None:intergenic | 40.0% | |
ACACACTACAAGAGAAAGCA+TGG | + | chr5.2:54100590-54100609 | MS.gene035864:CDS | 40.0% | |
AGTGTCCTGAAATCCTTCAA+TGG | - | chr5.2:54100566-54100585 | None:intergenic | 40.0% | |
ATTGATTGCAATAAGGGTCG+TGG | - | chr5.2:54100285-54100304 | None:intergenic | 40.0% | |
CAATCGTTACAACAACCTTC+AGG | + | chr5.2:54099910-54099929 | MS.gene035864:CDS | 40.0% | |
CCACCAGATGAAGAAGAAAA+AGG | - | chr5.2:54100785-54100804 | None:intergenic | 40.0% | |
CTAAGCCATTGAAGGATTTC+AGG | + | chr5.2:54100558-54100577 | MS.gene035864:CDS | 40.0% | |
CTGTTATGTCCTAAAACCCT+AGG | - | chr5.2:54100185-54100204 | None:intergenic | 40.0% | |
GTTAGGAAGGCCTATTTGTA+AGG | - | chr5.2:54099753-54099772 | None:intergenic | 40.0% | |
GTTCTTGTGAAGTTGAACCT+AGG | - | chr5.2:54099670-54099689 | None:intergenic | 40.0% | |
TGGTGATAGATGCATATGTG+GGG | + | chr5.2:54100413-54100432 | MS.gene035864:intron | 40.0% | |
! | AGCCCTTTTTCTTCTTCATC+TGG | + | chr5.2:54100779-54100798 | MS.gene035864:CDS | 40.0% |
! | CCTTTTTCTTCTTCATCTGG+TGG | + | chr5.2:54100782-54100801 | MS.gene035864:CDS | 40.0% |
AGAAAAACTGTGGCAAGCGT+TGG | + | chr5.2:54100681-54100700 | MS.gene035864:CDS | 45.0% | |
ATTGCAATAAGGGTCGTGGT+AGG | - | chr5.2:54100281-54100300 | None:intergenic | 45.0% | |
CAATCACCTTTCACTGCCAA+TGG | - | chr5.2:54100650-54100669 | None:intergenic | 45.0% | |
CATTGGCAGTGAAAGGTGAT+TGG | + | chr5.2:54100648-54100667 | MS.gene035864:CDS | 45.0% | |
CCTAGGAAGCTACTTAGCAA+AGG | - | chr5.2:54099653-54099672 | None:intergenic | 45.0% | |
CCTTTGCTAAGTAGCTTCCT+AGG | + | chr5.2:54099650-54099669 | MS.gene035864:CDS | 45.0% | |
GGTGATAGATGCATATGTGG+GGG | + | chr5.2:54100414-54100433 | MS.gene035864:intron | 45.0% | |
GTCTAACAATGGTCGTGGAT+GGG | - | chr5.2:54100483-54100502 | None:intergenic | 45.0% | |
TCCAAGAGCTAAGCCATTGA+AGG | + | chr5.2:54100550-54100569 | MS.gene035864:CDS | 45.0% | |
TCGAAAATGTGGGAAGCCAT+TGG | + | chr5.2:54100631-54100650 | MS.gene035864:CDS | 45.0% | |
! | GTCACAGTGGCCTTACAAAT+AGG | + | chr5.2:54099740-54099759 | MS.gene035864:CDS | 45.0% |
! | TCCTTCAATGGCTTAGCTCT+TGG | - | chr5.2:54100554-54100573 | None:intergenic | 45.0% |
!! | AAGCGTTGGCTTTGTATCTG+TGG | + | chr5.2:54100695-54100714 | MS.gene035864:CDS | 45.0% |
GGTAGGTCTAACAATGGTCG+TGG | - | chr5.2:54100488-54100507 | None:intergenic | 50.0% | |
GGTCTAACAATGGTCGTGGA+TGG | - | chr5.2:54100484-54100503 | None:intergenic | 50.0% | |
TAGATGCATATGTGGGGGCA+TGG | + | chr5.2:54100419-54100438 | MS.gene035864:intron | 50.0% | |
TCAAGCTGAGGATGTCACAG+TGG | + | chr5.2:54099727-54099746 | MS.gene035864:CDS | 50.0% | |
! | CATGGTTCGCAGTATCGAAG+AGG | + | chr5.2:54100437-54100456 | MS.gene035864:CDS | 50.0% |
! | TGGGTTCTTTTCAGCGAGTC+TGG | - | chr5.2:54100464-54100483 | None:intergenic | 50.0% |
GGGAAGCCATTGGCAGTGAA+AGG | + | chr5.2:54100641-54100660 | MS.gene035864:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 54099623 | 54100811 | 54099623 | ID=MS.gene035864 |
chr5.2 | mRNA | 54099623 | 54100811 | 54099623 | ID=MS.gene035864.t1;Parent=MS.gene035864 |
chr5.2 | exon | 54099623 | 54099931 | 54099623 | ID=MS.gene035864.t1.exon1;Parent=MS.gene035864.t1 |
chr5.2 | CDS | 54099623 | 54099931 | 54099623 | ID=cds.MS.gene035864.t1;Parent=MS.gene035864.t1 |
chr5.2 | exon | 54100422 | 54100811 | 54100422 | ID=MS.gene035864.t1.exon2;Parent=MS.gene035864.t1 |
chr5.2 | CDS | 54100422 | 54100811 | 54100422 | ID=cds.MS.gene035864.t1;Parent=MS.gene035864.t1 |
Gene Sequence |
Protein sequence |