AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035907

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035907.t1 MTR_5g062970 81.900 221 17 1 46 243 9 229 8.57e-126 363
MS.gene035907.t1 MTR_5g061220 53.631 358 97 5 72 368 16 365 5.15e-120 358
MS.gene035907.t1 MTR_1g058210 57.357 333 95 7 75 368 12 336 1.04e-114 343
MS.gene035907.t1 MTR_5g060630 52.762 362 104 8 72 368 9 368 8.26e-108 327
MS.gene035907.t1 MTR_5g460740 52.762 362 104 8 72 368 9 368 8.26e-108 327
MS.gene035907.t1 MTR_5g061890 51.437 348 117 9 75 382 12 347 1.30e-100 305
MS.gene035907.t1 MTR_5g060780 50.575 348 120 9 75 382 12 347 3.73e-99 301
MS.gene035907.t1 MTR_5g460920 50.575 348 120 9 75 382 12 347 3.25e-98 298
MS.gene035907.t1 MTR_5g040880 46.809 329 136 9 72 368 8 329 2.44e-87 275
MS.gene035907.t1 MTR_2g024430 49.390 328 123 14 75 368 20 338 3.19e-86 271
MS.gene035907.t1 MTR_5g082140 46.201 329 136 11 75 368 12 334 9.45e-79 250
MS.gene035907.t1 MTR_2g006270 46.526 331 129 10 75 367 13 333 1.29e-77 247
MS.gene035907.t1 MTR_5g040740 47.756 312 120 10 75 351 12 315 4.86e-76 242
MS.gene035907.t1 MTR_2g006380 43.675 332 132 14 75 367 20 335 4.97e-70 228
MS.gene035907.t1 MTR_5g062960 63.687 179 22 1 263 398 1 179 5.82e-69 216
MS.gene035907.t1 MTR_2g094570 37.432 366 152 8 75 367 11 372 1.48e-68 229
MS.gene035907.t1 MTR_2g094570 37.158 366 153 8 75 367 11 372 1.87e-68 229
MS.gene035907.t1 MTR_2g094570 37.158 366 153 8 75 367 67 428 3.39e-68 229
MS.gene035907.t1 MTR_3g073420 37.127 369 148 6 75 368 19 378 2.16e-65 219
MS.gene035907.t1 MTR_1g094960 37.466 371 152 10 71 367 15 379 2.24e-64 217
MS.gene035907.t1 MTR_1g064430 35.561 374 156 6 75 367 27 396 7.36e-62 211
MS.gene035907.t1 MTR_1g064430 35.561 374 156 6 75 367 40 409 9.59e-62 211
MS.gene035907.t1 MTR_4g058930 34.218 377 155 11 75 367 12 379 1.69e-50 180
MS.gene035907.t1 MTR_4g058930 34.218 377 155 11 75 367 12 379 2.22e-50 180
MS.gene035907.t1 MTR_2g014770 30.814 344 185 7 71 368 49 385 3.56e-49 176
MS.gene035907.t1 MTR_7g101275 33.010 309 165 5 85 355 2 306 6.10e-49 171
MS.gene035907.t1 MTR_2g014770 30.814 344 185 7 71 368 49 385 9.15e-49 176
MS.gene035907.t1 MTR_5g060770 43.725 247 96 8 121 367 30 233 5.31e-48 167
MS.gene035907.t1 MTR_7g101280 29.351 385 178 9 71 368 27 404 2.38e-47 171
MS.gene035907.t1 MTR_0041s0110 29.351 385 178 9 71 368 27 404 2.38e-47 171
MS.gene035907.t1 MTR_2g005240 33.134 335 178 8 75 368 23 352 5.18e-45 165
MS.gene035907.t1 MTR_4g021580 31.437 334 184 8 75 368 19 347 1.38e-44 163
MS.gene035907.t1 MTR_4g021580 31.437 334 184 8 75 368 19 347 2.38e-44 163
MS.gene035907.t1 MTR_8g100050 32.047 337 180 9 75 368 59 389 2.61e-44 164
MS.gene035907.t1 MTR_8g100050 32.047 337 180 9 75 368 59 389 4.15e-44 164
MS.gene035907.t1 MTR_7g062540 30.838 334 186 9 75 368 14 342 1.26e-43 161
MS.gene035907.t1 MTR_0041s0120 30.530 321 169 5 85 355 2 318 6.01e-42 152
MS.gene035907.t1 MTR_8g027440 32.440 336 177 10 75 368 29 356 4.42e-40 151
MS.gene035907.t1 MTR_4g088210 27.778 378 205 9 71 400 34 391 6.29e-40 151
MS.gene035907.t1 MTR_4g088210 27.778 378 205 9 71 400 34 391 6.36e-40 151
MS.gene035907.t1 MTR_8g079492 31.176 340 182 10 74 368 22 354 7.78e-40 151
MS.gene035907.t1 MTR_8g079492 31.176 340 182 10 74 368 22 354 7.85e-40 151
MS.gene035907.t1 MTR_2g018690 30.792 341 183 10 74 368 22 355 2.32e-39 150
MS.gene035907.t1 MTR_2g093740 29.480 346 187 9 75 368 56 396 1.11e-38 147
MS.gene035907.t1 MTR_2g093740 29.480 346 187 9 75 368 56 396 1.29e-38 147
MS.gene035907.t1 MTR_1g024025 31.378 341 186 11 71 368 39 374 1.56e-38 148
MS.gene035907.t1 MTR_2g093740 29.480 346 187 9 75 368 56 396 1.69e-38 147
MS.gene035907.t1 MTR_5g076270 30.792 341 183 10 74 368 23 356 2.08e-38 147
MS.gene035907.t1 MTR_4g124900 30.499 341 186 11 71 367 19 352 2.60e-38 147
MS.gene035907.t1 MTR_4g124900 30.499 341 186 11 71 367 19 352 2.94e-38 147
MS.gene035907.t1 MTR_2g043250 29.781 366 198 12 46 367 2 352 1.15e-37 145
MS.gene035907.t1 MTR_3g064050 29.619 341 187 9 74 368 25 358 3.04e-37 144
MS.gene035907.t1 MTR_2g093740 28.412 359 187 10 75 368 56 409 1.89e-35 138
MS.gene035907.t1 MTR_2g093740 28.412 359 187 10 75 368 56 409 1.91e-35 138
MS.gene035907.t1 MTR_2g093740 28.412 359 187 10 75 368 56 409 3.15e-35 138
MS.gene035907.t1 MTR_8g101360 29.326 341 192 8 72 368 28 363 2.20e-34 135
MS.gene035907.t1 MTR_4g060460 28.571 343 194 7 75 368 54 394 8.40e-33 130
MS.gene035907.t1 MTR_4g060460 28.571 343 194 7 75 368 54 394 9.70e-33 130
MS.gene035907.t1 MTR_8g079492 31.970 269 159 8 117 368 11 272 1.09e-31 127
MS.gene035907.t1 MTR_2g093740 31.641 256 146 7 137 368 16 266 1.58e-30 124
MS.gene035907.t1 MTR_2g093740 31.641 256 146 7 137 368 16 266 2.31e-30 123
MS.gene035907.t1 MTR_5g460910 35.628 247 94 9 121 367 47 228 3.14e-28 114
MS.gene035907.t1 MTR_2g093740 30.112 269 146 8 137 368 16 279 2.30e-27 114
MS.gene035907.t1 MTR_2g093740 30.112 269 146 8 137 368 16 279 2.99e-27 114
MS.gene035907.t1 MTR_8g446900 28.452 239 143 6 147 367 57 285 1.33e-21 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035907.t1 AT1G77850 39.726 365 139 9 76 368 20 375 1.15e-73 241
MS.gene035907.t1 AT1G77850 39.726 365 139 9 76 368 20 375 1.58e-73 240
MS.gene035907.t1 AT4G30080 36.685 368 152 10 75 367 19 380 1.33e-63 216
MS.gene035907.t1 AT2G28350 36.096 374 153 9 75 367 10 378 4.93e-59 203
MS.gene035907.t1 AT2G28350 36.096 374 153 9 75 367 10 378 5.22e-59 204
MS.gene035907.t1 AT3G61830 33.631 336 175 9 74 368 24 352 6.96e-50 177
MS.gene035907.t1 AT2G46530 33.036 336 177 9 74 368 20 348 3.54e-49 176
MS.gene035907.t1 AT2G46530 33.036 336 177 9 74 368 41 369 3.56e-49 176
MS.gene035907.t1 AT1G59750 30.746 335 186 7 75 368 22 351 1.74e-44 164
MS.gene035907.t1 AT1G59750 30.746 335 186 7 75 368 22 351 1.74e-44 164
MS.gene035907.t1 AT1G59750 30.746 335 186 7 75 368 22 351 1.88e-44 163
MS.gene035907.t1 AT1G59750 30.746 335 186 7 75 368 22 351 1.95e-44 163
MS.gene035907.t1 AT4G23980 30.655 336 184 8 75 368 12 340 3.68e-44 162
MS.gene035907.t1 AT4G23980 30.655 336 184 8 75 368 12 340 3.68e-44 162
MS.gene035907.t1 AT5G62000 30.952 336 185 9 75 368 61 391 6.66e-43 160
MS.gene035907.t1 AT5G62000 30.952 336 185 9 75 368 61 391 7.16e-43 160
MS.gene035907.t1 AT5G62000 30.952 336 185 9 75 368 61 391 7.16e-43 160
MS.gene035907.t1 AT5G62000 30.952 336 185 9 75 368 61 391 7.16e-43 160
MS.gene035907.t1 AT5G62000 30.952 336 185 9 75 368 61 391 7.16e-43 160
MS.gene035907.t1 AT2G33860 30.028 353 192 9 75 380 54 398 4.66e-42 156
MS.gene035907.t1 AT5G37020 29.912 341 186 10 74 368 21 354 7.35e-40 151
MS.gene035907.t1 AT5G37020 29.912 341 186 10 74 368 21 354 1.19e-39 151
MS.gene035907.t1 AT1G34390 31.325 332 180 12 75 368 27 348 5.95e-39 147
MS.gene035907.t1 AT1G34310 32.424 330 179 10 75 367 27 349 2.24e-38 145
MS.gene035907.t1 AT2G46530 35.593 236 130 6 148 368 33 261 3.71e-38 144
MS.gene035907.t1 AT3G61830 36.481 233 126 6 151 368 76 301 3.93e-38 144
MS.gene035907.t1 AT1G19850 30.663 362 200 10 50 367 31 385 4.96e-38 146
MS.gene035907.t1 AT1G35540 30.857 350 198 11 75 387 27 369 5.07e-38 145
MS.gene035907.t1 AT1G19850 31.215 362 198 12 50 367 20 374 5.60e-38 146
MS.gene035907.t1 AT1G30330 29.912 341 186 10 74 368 24 357 7.87e-38 145
MS.gene035907.t1 AT1G30330 29.912 341 186 10 74 368 24 357 7.87e-38 145
MS.gene035907.t1 AT1G30330 29.912 341 186 10 74 368 22 355 8.01e-38 145
MS.gene035907.t1 AT1G35520 31.722 331 182 10 75 368 27 350 1.91e-37 143
MS.gene035907.t1 AT1G35240 31.722 331 182 10 75 368 27 350 3.51e-37 142
MS.gene035907.t1 AT5G20730 30.588 340 185 11 72 367 21 353 8.11e-36 140
MS.gene035907.t1 AT1G34410 31.118 331 184 10 75 368 27 350 1.35e-35 138
MS.gene035907.t1 AT5G60450 28.771 358 186 10 68 368 34 379 3.07e-35 138
MS.gene035907.t1 AT1G19220 28.863 343 189 8 72 368 20 353 3.90e-35 138
MS.gene035907.t1 AT5G60450 28.814 354 183 10 72 368 62 403 6.72e-35 137
MS.gene035907.t1 AT5G20730 30.499 341 185 12 72 367 21 354 2.55e-34 135
MS.gene035907.t1 AT5G20730 30.499 341 185 12 72 367 21 354 2.64e-34 135
MS.gene035907.t1 AT2G33860 31.707 246 145 6 152 380 2 241 1.36e-32 128
MS.gene035907.t1 AT5G37020 30.303 264 160 8 122 368 3 259 1.07e-30 124
MS.gene035907.t1 AT1G34170 28.212 358 205 11 53 367 1 349 2.75e-30 122
MS.gene035907.t1 AT1G34170 28.882 322 177 9 75 367 25 323 6.80e-25 106
MS.gene035907.t1 AT1G34170 28.161 348 192 11 53 367 1 323 7.13e-25 107
MS.gene035907.t1 AT1G43950 36.000 200 99 7 75 250 27 221 1.09e-24 101

Find 99 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGAATCTTCGAGATTTC+AGG 0.221871 5.2:+52868727 None:intergenic
GATAGGGATGATGGTTTCTT+TGG 0.224215 5.2:-52866708 MS.gene035907:CDS
TTTGGATTCTGCGAGATTTC+AGG 0.242925 5.2:+52866946 None:intergenic
TCGTCTTCGGCAGGAACTTC+TGG 0.250370 5.2:+52868349 None:intergenic
AGCACATTTCTGCCAGATTT+TGG 0.250965 5.2:+52868537 None:intergenic
CTGGAGGAGCTTCTTGTTCA+TGG 0.266288 5.2:+52868368 None:intergenic
CCCTAATTGGCGCATGCTTC+AGG 0.281500 5.2:-52867732 MS.gene035907:intron
TTTCTTTGGGAATAGTTTAA+TGG 0.299736 5.2:-52866694 MS.gene035907:CDS
AAGTCCATCCCCTACTAAAA+AGG 0.312107 5.2:+52868113 None:intergenic
CTCCTTCTAATGTCCCTAAT+TGG 0.322348 5.2:-52867745 MS.gene035907:CDS
TGGCCATGGCCATCCGTTAC+AGG 0.326930 5.2:+52868388 None:intergenic
TGCCAAGGATTGACACGGTT+TGG 0.344134 5.2:+52866928 None:intergenic
TCTAAGCATGTCTTCTCCTT+GGG 0.344156 5.2:-52869315 None:intergenic
ATCTAAGCATGTCTTCTCCT+TGG 0.347203 5.2:-52869316 None:intergenic
ACCTGAAGCATGCGCCAATT+AGG 0.352249 5.2:+52867731 None:intergenic
TGCCAAGGATTGACACAGTT+TGG 0.353376 5.2:+52868709 None:intergenic
GGTAACAGAGAAGGCGGTTA+TGG 0.361245 5.2:-52867990 MS.gene035907:CDS
GGTTATGGATGCGGTGGAAT+TGG 0.365128 5.2:-52867975 MS.gene035907:CDS
CCTGAAGCATGCGCCAATTA+GGG 0.377642 5.2:+52867732 None:intergenic
AGATGTCCAACTAATCTTCA+TGG 0.384765 5.2:+52867865 None:intergenic
ACACAATCTGATTGCAATAG+TGG 0.393698 5.2:-52868289 MS.gene035907:CDS
GCTCCCCGGTATCACTTAAC+AGG 0.396579 5.2:+52868605 None:intergenic
CTGACATTCAAGGCCGAGTC+TGG 0.403843 5.2:-52868174 MS.gene035907:CDS
CATGATCATCTATCTGAATC+AGG 0.405840 5.2:-52866750 MS.gene035907:CDS
ATAGGGATGATGGTTTCTTT+GGG 0.416517 5.2:-52866707 MS.gene035907:CDS
GTATATACAGTTCAGCTTTG+TGG 0.420575 5.2:+52868671 None:intergenic
ATGAAGATTAGTTGGACATC+TGG 0.423644 5.2:-52867863 MS.gene035907:CDS
ATTGTTGCCATCCTCGTCTT+CGG 0.424546 5.2:+52868336 None:intergenic
CGCCAATTAGGGACATTAGA+AGG 0.425529 5.2:+52867743 None:intergenic
TCTCTTTATTATAGGTTAAG+TGG 0.429394 5.2:-52866975 MS.gene035907:intron
GATGAGATTGTTTCAGCCTC+AGG 0.431757 5.2:-52867792 MS.gene035907:CDS
ATGAAGCCATGAAGATTAGT+TGG 0.434326 5.2:-52867871 MS.gene035907:CDS
GATCTTGCCGAAGCTTAACT+TGG 0.446257 5.2:-52868230 MS.gene035907:CDS
TTACCATCCCTACCAAAATC+TGG 0.452282 5.2:-52868549 MS.gene035907:CDS
CTGCATGAATGCAGGGAGCC+AGG 0.454699 5.2:-52866773 MS.gene035907:intron
TGTATTATCCGAGAGCGAAT+TGG 0.460538 5.2:-52867925 MS.gene035907:CDS
CTCTCCGTCACTGACATTCA+AGG 0.461163 5.2:-52868184 MS.gene035907:CDS
TCTGTCCTGTTAAGTGATAC+CGG 0.467467 5.2:-52868610 MS.gene035907:CDS
CTCTTTATTATAGGTTAAGT+GGG 0.469153 5.2:-52866974 MS.gene035907:intron
TCTGATTGCAATAGTGGCTA+TGG 0.469763 5.2:-52868283 MS.gene035907:CDS
GAAGATTCTTCTTTCTTGAA+AGG 0.471685 5.2:+52867824 None:intergenic
TTGCCATCCTCGTCTTCGGC+AGG 0.474250 5.2:+52868340 None:intergenic
ATCCAAACCGTGTCAATCCT+TGG 0.478895 5.2:-52866930 MS.gene035907:CDS
GAATCGTCCAAGTTAAGCTT+CGG 0.478925 5.2:+52868223 None:intergenic
TAAACTTTAGAATGTAGCTT+CGG 0.481122 5.2:+52868496 None:intergenic
TTCCAAACTGTGTCAATCCT+TGG 0.497383 5.2:-52868711 MS.gene035907:CDS
TTTGGGAATAGTTTAATGGC+AGG 0.505925 5.2:-52866690 MS.gene035907:intron
AAAATCTGGCAGAAATGTGC+TGG 0.507785 5.2:-52868535 MS.gene035907:CDS
CTGTCCTGTTAAGTGATACC+GGG 0.511775 5.2:-52868609 MS.gene035907:CDS
AAACTGTGTCAATCCTTGGC+AGG 0.512278 5.2:-52868707 MS.gene035907:CDS
AGGAGGATAACGATGAAGAA+GGG 0.521368 5.2:+52868423 None:intergenic
AAGGAGGATAACGATGAAGA+AGG 0.529163 5.2:+52868422 None:intergenic
AGAGAAGGCGGTTATGGATG+CGG 0.535241 5.2:-52867984 MS.gene035907:CDS
ATGAGATTGTTTCAGCCTCA+GGG 0.536866 5.2:-52867791 MS.gene035907:CDS
GAGCTTCTTGTTCATGGCCA+TGG 0.538260 5.2:+52868374 None:intergenic
GTTGGAATATGCCGGAAAAG+TGG 0.542178 5.2:-52868016 MS.gene035907:CDS
AAATCAAACCAATTCGCTCT+CGG 0.544399 5.2:+52867917 None:intergenic
AAACCGTGTCAATCCTTGGC+AGG 0.544931 5.2:-52866926 MS.gene035907:intron
TTCCATCCTCACTCCTGTAA+CGG 0.546200 5.2:-52868401 MS.gene035907:CDS
TATGGATGCGGTGGAATTGG+CGG 0.548189 5.2:-52867972 MS.gene035907:CDS
ATCCGTTACAGGAGTGAGGA+TGG 0.551125 5.2:+52868399 None:intergenic
ACAGAGCTCTCAGCACGTCT+AGG 0.552883 5.2:+52868628 None:intergenic
AGATATTCGTTGGAATATGC+CGG 0.558862 5.2:-52868024 MS.gene035907:CDS
TCAGCTGGGAAGATATTCGT+TGG 0.559165 5.2:-52868034 MS.gene035907:CDS
TTCAGATAGATGATCATGCC+TGG 0.566085 5.2:+52866755 None:intergenic
AACAACAAGAAACTCGTCGC+TGG 0.566110 5.2:-52868082 MS.gene035907:CDS
GGCAAGATCAAGTCAACGCA+AGG 0.570350 5.2:+52868244 None:intergenic
CATGTTCTAAGTGACCTTGT+GGG 0.576431 5.2:+52868467 None:intergenic
TTGGAATATGCCGGAAAAGT+GGG 0.577884 5.2:-52868015 MS.gene035907:CDS
ACATGTTCTAAGTGACCTTG+TGG 0.589249 5.2:+52868466 None:intergenic
TGCTTCGGAATGTAGCTCCC+CGG 0.594410 5.2:+52868591 None:intergenic
TATGCGTGTACTGCCAGACT+CGG 0.597780 5.2:+52868161 None:intergenic
ATCCTCACTCCTGTAACGGA+TGG 0.600039 5.2:-52868397 MS.gene035907:CDS
ACTCCTGTAACGGATGGCCA+TGG 0.603479 5.2:-52868391 MS.gene035907:CDS
AGAAGTTCCTGCCGAAGACG+AGG 0.606495 5.2:-52868347 MS.gene035907:CDS
TGAATAAGTTCAACCTGCCA+AGG 0.607758 5.2:+52868694 None:intergenic
GTTACAGGAGTGAGGATGGA+AGG 0.609129 5.2:+52868403 None:intergenic
GTGGATACAGTAACCTGCCA+AGG 0.613366 5.2:+52866913 None:intergenic
TCTTCGGCAGGAACTTCTGG+AGG 0.623502 5.2:+52868352 None:intergenic
GTTCCTGCCGAAGACGAGGA+TGG 0.623564 5.2:-52868343 MS.gene035907:CDS
AAGGGTGATGATTGTGTGAG+CGG 0.624730 5.2:+52868441 None:intergenic
AAGTGGGAAGGTAACAGAGA+AGG 0.628618 5.2:-52867999 MS.gene035907:CDS
GAAGGCGGTTATGGATGCGG+TGG 0.634390 5.2:-52867981 MS.gene035907:CDS
GGCCATCCGTTACAGGAGTG+AGG 0.635015 5.2:+52868395 None:intergenic
TTGTGTGAGAATCTTGACAA+AGG 0.644198 5.2:+52868306 None:intergenic
ACAGGAGTGAGGATGGAAGG+AGG 0.648192 5.2:+52868406 None:intergenic
GTGACGGAGAGTGTCTGAGA+TGG 0.649352 5.2:+52868196 None:intergenic
AAAGTTTACTACTTCCCACA+AGG 0.649931 5.2:-52868481 MS.gene035907:CDS
TGAGATTGTTTCAGCCTCAG+GGG 0.653939 5.2:-52867790 MS.gene035907:CDS
TCGGCCTTGAATGTCAGTGA+CGG 0.654538 5.2:+52868180 None:intergenic
GCAAGATCAAGTCAACGCAA+GGG 0.677166 5.2:+52868245 None:intergenic
TGGGAAGGTAACAGAGAAGG+CGG 0.684452 5.2:-52867996 MS.gene035907:CDS
TAACCTGCCAAGGATTGACA+CGG 0.687747 5.2:+52866923 None:intergenic
GGTGTCTCTTGGATTTACCG+CGG 0.707333 5.2:+52868134 None:intergenic
AATATGCCGGAAAAGTGGGA+AGG 0.715565 5.2:-52868011 MS.gene035907:CDS
TGTCCTGTTAAGTGATACCG+GGG 0.717824 5.2:-52868608 MS.gene035907:CDS
TAGCTTCGGAATCTTGACTG+AGG 0.723506 5.2:+52868510 None:intergenic
ACATCTGAGATTGTCCCCTG+AGG 0.727814 5.2:+52867776 None:intergenic
CAGTACACGCATATCTACCG+CGG 0.778287 5.2:-52868151 MS.gene035907:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAAGAGATAAAAATA+TGG + chr5.2:52868360-52868379 None:intergenic 10.0%
!! ATCAAAAGATATAAAAAAAA+TGG + chr5.2:52866576-52866595 None:intergenic 10.0%
!!! TATTTTTATCTCTTTATTAT+AGG - chr5.2:52868360-52868379 MS.gene035907:CDS 10.0%
!! AAAATCACATTAGAAAAAAA+AGG + chr5.2:52869281-52869300 None:intergenic 15.0%
!! TAAAATTCTACAAACAAAAT+TGG - chr5.2:52869013-52869032 MS.gene035907:intron 15.0%
!! TAGAAAAAAAAGGAATTAAT+AGG + chr5.2:52869271-52869290 None:intergenic 15.0%
!!! TTTTTATATCTTTTGATCAT+AGG - chr5.2:52866579-52866598 MS.gene035907:intron 15.0%
!! AAATAACAAAATTATTTCGC+GGG - chr5.2:52869069-52869088 MS.gene035907:intron 20.0%
!! AAATACTCTTAATGCTTAAT+AGG - chr5.2:52868245-52868264 MS.gene035907:CDS 20.0%
!! ATCATAGTTACAAAATTTGT+TGG + chr5.2:52868992-52869011 None:intergenic 20.0%
!! ATTAATTCTTAATGCAAACT+AGG + chr5.2:52866249-52866268 None:intergenic 20.0%
!! CAAATAACAAAATTATTTCG+CGG - chr5.2:52869068-52869087 MS.gene035907:intron 20.0%
!! TAAAGTCATTGAACTTAATT+TGG + chr5.2:52866136-52866155 None:intergenic 20.0%
!! TTACAGTTCAAATTTATAGT+TGG - chr5.2:52867715-52867734 MS.gene035907:intron 20.0%
!! TTCTTAGAAAATATCACTAT+TGG + chr5.2:52866398-52866417 None:intergenic 20.0%
!!! AAAAAGCTGTTTATGTTTTT+TGG + chr5.2:52868024-52868043 None:intergenic 20.0%
!!! AAAAGCTGTTTATGTTTTTT+GGG + chr5.2:52868023-52868042 None:intergenic 20.0%
!!! AAATGTAATTCTAAGATCAA+GGG - chr5.2:52867901-52867920 MS.gene035907:CDS 20.0%
!!! ATGGTAAATATAGATTTTGT+GGG + chr5.2:52866781-52866800 None:intergenic 20.0%
!!! TAAGAAATCCTAAGTTATTT+TGG + chr5.2:52866087-52866106 None:intergenic 20.0%
! AAAGGGAAACTAAATATAAC+TGG + chr5.2:52868053-52868072 None:intergenic 25.0%
! ACATTTGAATCTTATCCTAT+AGG + chr5.2:52867887-52867906 None:intergenic 25.0%
! ACTATTGGAGATAGTTATTT+AGG + chr5.2:52868168-52868187 None:intergenic 25.0%
! ATTAGAAGATGAATGATGAA+AGG - chr5.2:52867826-52867845 MS.gene035907:CDS 25.0%
! ATTCATTAAAAATCCCAGAA+AGG + chr5.2:52868071-52868090 None:intergenic 25.0%
! CATTATCTGATGAATTCTTA+AGG + chr5.2:52866296-52866315 None:intergenic 25.0%
! CATTTGAATCTTATCCTATA+GGG + chr5.2:52867886-52867905 None:intergenic 25.0%
! CTCTTTATTATAGGTTAAGT+GGG - chr5.2:52868369-52868388 MS.gene035907:CDS 25.0%
! GTGAAAAAATTCGTAGAAAA+AGG + chr5.2:52868901-52868920 None:intergenic 25.0%
! TATTAACTAATACAAACCCA+AGG + chr5.2:52866047-52866066 None:intergenic 25.0%
! TCAAAGAAATCATTGAATTG+TGG + chr5.2:52867754-52867773 None:intergenic 25.0%
! TCTCTTTATTATAGGTTAAG+TGG - chr5.2:52868368-52868387 MS.gene035907:CDS 25.0%
! TTAGAAGATGAATGATGAAA+GGG - chr5.2:52867827-52867846 MS.gene035907:CDS 25.0%
! TTCATTAAAAATCCCAGAAA+GGG + chr5.2:52868070-52868089 None:intergenic 25.0%
! TTCTTAGAGAATATCACTAT+TGG + chr5.2:52868183-52868202 None:intergenic 25.0%
!! AAAACCTATTTGAGTGATTT+TGG - chr5.2:52869169-52869188 MS.gene035907:intron 25.0%
!! AAACCTATTTGAGTGATTTT+GGG - chr5.2:52869170-52869189 MS.gene035907:intron 25.0%
!! GAATTAATTCCAAGTTGAAA+TGG - chr5.2:52866261-52866280 MS.gene035907:intron 25.0%
!! GATGGTAAATATAGATTTTG+TGG + chr5.2:52866782-52866801 None:intergenic 25.0%
!! TATATTTAGTTTCCCTTTCT+GGG - chr5.2:52868055-52868074 MS.gene035907:CDS 25.0%
!! TCATTGAACTTAATTTGGTA+TGG + chr5.2:52866131-52866150 None:intergenic 25.0%
!! TGGTAAATATAGATTTTGTG+GGG + chr5.2:52866780-52866799 None:intergenic 25.0%
!! TTATATTTAGTTTCCCTTTC+TGG - chr5.2:52868054-52868073 MS.gene035907:CDS 25.0%
!! TTTCTTTGGGAATAGTTTAA+TGG - chr5.2:52868649-52868668 MS.gene035907:CDS 25.0%
!!! AGGTTTTATAATATGCATGT+TGG + chr5.2:52869156-52869175 None:intergenic 25.0%
!!! ATAGGTTTGTTGATGAATAA+AGG + chr5.2:52869253-52869272 None:intergenic 25.0%
!!! CAAATGTAATTCTAAGATCA+AGG - chr5.2:52867900-52867919 MS.gene035907:CDS 25.0%
!!! TAAACTTTAGAATGTAGCTT+CGG + chr5.2:52866850-52866869 None:intergenic 25.0%
!!! TTCGAACTTTTTGATTGATA+GGG - chr5.2:52868619-52868638 MS.gene035907:CDS 25.0%
!!! TTGCTTTTCCAAAATAACTT+AGG - chr5.2:52866076-52866095 MS.gene035907:intron 25.0%
ATACCCAAAATCACTCAAAT+AGG + chr5.2:52869176-52869195 None:intergenic 30.0%
ATTGGAGATAGTTATTTAGG+TGG + chr5.2:52868165-52868184 None:intergenic 30.0%
CAAAATTCTTTGTGATCAAG+AGG + chr5.2:52867988-52868007 None:intergenic 30.0%
CATCATTCATCTTCTAATTG+TGG + chr5.2:52867824-52867843 None:intergenic 30.0%
CTATTTCAAATGACTGATGT+TGG - chr5.2:52866543-52866562 MS.gene035907:intron 30.0%
GAAGATTCTTCTTTCTTGAA+AGG + chr5.2:52867522-52867541 None:intergenic 30.0%
GGAAACTAAATATAACTGGA+AGG + chr5.2:52868049-52868068 None:intergenic 30.0%
GTATCACAGTTAACAATGTT+TGG + chr5.2:52868545-52868564 None:intergenic 30.0%
! AAAGAAGCATACAGAAGAAT+TGG + chr5.2:52867939-52867958 None:intergenic 30.0%
! AAGAAGCATACAGAAGAATT+GGG + chr5.2:52867938-52867957 None:intergenic 30.0%
! CTTTTGATCATAGGTTAACT+GGG - chr5.2:52866588-52866607 MS.gene035907:intron 30.0%
! TCTTTTGATCATAGGTTAAC+TGG - chr5.2:52866587-52866606 MS.gene035907:intron 30.0%
! TGAACTTAATTTGGTATGGT+AGG + chr5.2:52866127-52866146 None:intergenic 30.0%
! TTTTCGTTAAAAACTCAGCT+GGG - chr5.2:52867295-52867314 MS.gene035907:intron 30.0%
!! ACGTCTAGGATTTTTATTTG+GGG + chr5.2:52866704-52866723 None:intergenic 30.0%
!! CACGTCTAGGATTTTTATTT+GGG + chr5.2:52866705-52866724 None:intergenic 30.0%
!! CTTCGAACTTTTTGATTGAT+AGG - chr5.2:52868618-52868637 MS.gene035907:CDS 30.0%
!! TTTTTGATTGATAGGGATGA+TGG - chr5.2:52868626-52868645 MS.gene035907:CDS 30.0%
!!! GAATTGGTTTGATTTTGTAG+TGG - chr5.2:52867434-52867453 MS.gene035907:intron 30.0%
!!! TCTACGAATTTTTTCACGAT+AGG - chr5.2:52868904-52868923 MS.gene035907:intron 30.0%
AAAAACCATGCATGATGCAT+GGG - chr5.2:52868720-52868739 MS.gene035907:CDS 35.0%
AAAGTTTACTACTTCCCACA+AGG - chr5.2:52866862-52866881 MS.gene035907:intron 35.0%
AAATCAAACCAATTCGCTCT+CGG + chr5.2:52867429-52867448 None:intergenic 35.0%
AAGGGATCATAGAAATGAAG+GGG + chr5.2:52868503-52868522 None:intergenic 35.0%
ACACAATCTGATTGCAATAG+TGG - chr5.2:52867054-52867073 MS.gene035907:intron 35.0%
ACTAGGCAGTCACATAAATT+CGG + chr5.2:52866232-52866251 None:intergenic 35.0%
ACTATTTCGAATGACTGTGT+TGG - chr5.2:52868327-52868346 MS.gene035907:CDS 35.0%
AGATATTCGTTGGAATATGC+CGG - chr5.2:52867319-52867338 MS.gene035907:intron 35.0%
AGATGTCCAACTAATCTTCA+TGG + chr5.2:52867481-52867500 None:intergenic 35.0%
ATGAAGCCATGAAGATTAGT+TGG - chr5.2:52867472-52867491 MS.gene035907:intron 35.0%
CAAATTCCATGCCAACATAT+GGG - chr5.2:52869196-52869215 MS.gene035907:intron 35.0%
CATGATCATCTATCTGAATC+AGG - chr5.2:52868593-52868612 MS.gene035907:CDS 35.0%
GAAGGGATCATAGAAATGAA+GGG + chr5.2:52868504-52868523 None:intergenic 35.0%
GTATATACAGTTCAGCTTTG+TGG + chr5.2:52866675-52866694 None:intergenic 35.0%
GTCACATAAATTCGGAATTC+TGG + chr5.2:52866224-52866243 None:intergenic 35.0%
TAGGTGGTCAATGATGAAAA+CGG + chr5.2:52868149-52868168 None:intergenic 35.0%
TCAAATTCCATGCCAACATA+TGG - chr5.2:52869195-52869214 MS.gene035907:intron 35.0%
TGAAGGGATCATAGAAATGA+AGG + chr5.2:52868505-52868524 None:intergenic 35.0%
TGATGAATTCTTAAGGCACA+GGG + chr5.2:52866289-52866308 None:intergenic 35.0%
TTGTGTGAGAATCTTGACAA+AGG + chr5.2:52867040-52867059 None:intergenic 35.0%
TTTGGGAATAGTTTAATGGC+AGG - chr5.2:52868653-52868672 MS.gene035907:CDS 35.0%
! AGTTAACAATGTTTGGTTCC+AGG + chr5.2:52868538-52868557 None:intergenic 35.0%
! ATAGGGATGATGGTTTCTTT+GGG - chr5.2:52868636-52868655 MS.gene035907:CDS 35.0%
! ATGAAGATTAGTTGGACATC+TGG - chr5.2:52867480-52867499 MS.gene035907:intron 35.0%
! CAAAGAATTTTGCAGCATTG+AGG - chr5.2:52867996-52868015 MS.gene035907:CDS 35.0%
! GTACATACGCTTTCTTCTTT+TGG - chr5.2:52867633-52867652 MS.gene035907:intron 35.0%
! GTTTTCGTTAAAAACTCAGC+TGG - chr5.2:52867294-52867313 MS.gene035907:intron 35.0%
! TTTGGAATCTTCGAGATTTC+AGG + chr5.2:52866619-52866638 None:intergenic 35.0%
!! AAGAGACACCTTTTTAGTAG+GGG - chr5.2:52867222-52867241 MS.gene035907:intron 35.0%
!! AATATGCATGTTGGCTTTGT+TGG + chr5.2:52869147-52869166 None:intergenic 35.0%
!! ATTTCTGCCAGATTTTGGTA+GGG + chr5.2:52866804-52866823 None:intergenic 35.0%
!! CAAGAGACACCTTTTTAGTA+GGG - chr5.2:52867221-52867240 MS.gene035907:intron 35.0%
!! CGTCTAGGATTTTTATTTGG+GGG + chr5.2:52866703-52866722 None:intergenic 35.0%
!! GCACGTCTAGGATTTTTATT+TGG + chr5.2:52866706-52866725 None:intergenic 35.0%
!! GTCTAGGATTTTTATTTGGG+GGG + chr5.2:52866702-52866721 None:intergenic 35.0%
!! TCTAGGATTTTTATTTGGGG+GGG + chr5.2:52866701-52866720 None:intergenic 35.0%
AAAATCTGGCAGAAATGTGC+TGG - chr5.2:52866808-52866827 MS.gene035907:intron 40.0%
AAGGAGGATAACGATGAAGA+AGG + chr5.2:52866924-52866943 None:intergenic 40.0%
AAGTCCATCCCCTACTAAAA+AGG + chr5.2:52867233-52867252 None:intergenic 40.0%
ACTATTGGAGCAAGTTACGT+AGG + chr5.2:52866383-52866402 None:intergenic 40.0%
AGGAGGATAACGATGAAGAA+GGG + chr5.2:52866923-52866942 None:intergenic 40.0%
AGGTGGTCAATGATGAAAAC+GGG + chr5.2:52868148-52868167 None:intergenic 40.0%
AGGTTTGAGTAGTACTGTGT+CGG - chr5.2:52868673-52868692 MS.gene035907:CDS 40.0%
ATGAGATTGTTTCAGCCTCA+GGG - chr5.2:52867552-52867571 MS.gene035907:intron 40.0%
ATTGACTAGAGAACCACGAT+TGG + chr5.2:52868969-52868988 None:intergenic 40.0%
CAAAAACCATGCATGATGCA+TGG - chr5.2:52868719-52868738 MS.gene035907:CDS 40.0%
CTCCTTCTAATGTCCCTAAT+TGG - chr5.2:52867598-52867617 MS.gene035907:intron 40.0%
CTGATGAATTCTTAAGGCAC+AGG + chr5.2:52866290-52866309 None:intergenic 40.0%
GAATCGTCCAAGTTAAGCTT+CGG + chr5.2:52867123-52867142 None:intergenic 40.0%
TACAGAAGAATTGGGTGTCA+TGG + chr5.2:52867930-52867949 None:intergenic 40.0%
TCTGATTGCAATAGTGGCTA+TGG - chr5.2:52867060-52867079 MS.gene035907:intron 40.0%
TCTGTCCTGTTAAGTGATAC+CGG - chr5.2:52866733-52866752 MS.gene035907:CDS 40.0%
TGAATAAGTTCAACCTGCCA+AGG + chr5.2:52866652-52866671 None:intergenic 40.0%
TGTATTATCCGAGAGCGAAT+TGG - chr5.2:52867418-52867437 MS.gene035907:intron 40.0%
TTACCATCCCTACCAAAATC+TGG - chr5.2:52866794-52866813 MS.gene035907:intron 40.0%
TTCAGATAGATGATCATGCC+TGG + chr5.2:52868591-52868610 None:intergenic 40.0%
TTCCAAACTGTGTCAATCCT+TGG - chr5.2:52866632-52866651 MS.gene035907:intron 40.0%
TTCGCGGTACTTTCTTGTAT+TGG + chr5.2:52868932-52868951 None:intergenic 40.0%
TTCTATGATCCCTTCAACAC+CGG - chr5.2:52868509-52868528 MS.gene035907:CDS 40.0%
TTGGAATATGCCGGAAAAGT+GGG - chr5.2:52867328-52867347 MS.gene035907:intron 40.0%
TTTGGATTCTGCGAGATTTC+AGG + chr5.2:52868400-52868419 None:intergenic 40.0%
! AAAGCGTTAGTCCCATATGT+TGG + chr5.2:52869210-52869229 None:intergenic 40.0%
! AAGTCTAGGCCTTTTTGTTG+GGG + chr5.2:52868463-52868482 None:intergenic 40.0%
! ACAGAAGAATTGGGTGTCAT+GGG + chr5.2:52867929-52867948 None:intergenic 40.0%
! ACATGTTCTAAGTGACCTTG+TGG + chr5.2:52866880-52866899 None:intergenic 40.0%
! ACTTTTCCTGCATGAATGCA+GGG - chr5.2:52868563-52868582 MS.gene035907:CDS 40.0%
! AGATTTTGTGGGGAATGCTT+CGG + chr5.2:52866770-52866789 None:intergenic 40.0%
! AGCACATTTCTGCCAGATTT+TGG + chr5.2:52866809-52866828 None:intergenic 40.0%
! CAAGTCTAGGCCTTTTTGTT+GGG + chr5.2:52868464-52868483 None:intergenic 40.0%
! CAGTAGACGACTTTTAGTAG+CGG + chr5.2:52868839-52868858 None:intergenic 40.0%
! CATGTTCTAAGTGACCTTGT+GGG + chr5.2:52866879-52866898 None:intergenic 40.0%
! GATAGGGATGATGGTTTCTT+TGG - chr5.2:52868635-52868654 MS.gene035907:CDS 40.0%
! TAAATTCGGAATTCTGGCTG+AGG + chr5.2:52866218-52866237 None:intergenic 40.0%
! TACTTTTCCTGCATGAATGC+AGG - chr5.2:52868562-52868581 MS.gene035907:CDS 40.0%
! TGTTTTTCCCTCAGACACAA+CGG - chr5.2:52869303-52869322 MS.gene035907:intron 40.0%
!! CATTTCTGCCAGATTTTGGT+AGG + chr5.2:52866805-52866824 None:intergenic 40.0%
!! CCAAGAGACACCTTTTTAGT+AGG - chr5.2:52867220-52867239 MS.gene035907:intron 40.0%
!! CCTACTAAAAAGGTGTCTCT+TGG + chr5.2:52867223-52867242 None:intergenic 40.0%
!! TACAAGAAAGTACCGCGAAT+CGG - chr5.2:52868933-52868952 MS.gene035907:intron 40.0%
!! TGTATAGCTTTGTGCCCTAT+AGG - chr5.2:52867869-52867888 MS.gene035907:CDS 40.0%
!!! ACTTTTAGTAGCGGACGTTT+TGG + chr5.2:52868830-52868849 None:intergenic 40.0%
AAACTGTGTCAATCCTTGGC+AGG - chr5.2:52866636-52866655 MS.gene035907:intron 45.0%
AACAACAAGAAACTCGTCGC+TGG - chr5.2:52867261-52867280 MS.gene035907:intron 45.0%
AAGGGTGATGATTGTGTGAG+CGG + chr5.2:52866905-52866924 None:intergenic 45.0%
AAGTGGGAAGGTAACAGAGA+AGG - chr5.2:52867344-52867363 MS.gene035907:intron 45.0%
AATATGCCGGAAAAGTGGGA+AGG - chr5.2:52867332-52867351 MS.gene035907:intron 45.0%
ATCCAAACCGTGTCAATCCT+TGG - chr5.2:52868413-52868432 MS.gene035907:CDS 45.0%
ATTGTTGCCATCCTCGTCTT+CGG + chr5.2:52867010-52867029 None:intergenic 45.0%
CACAGGGAACCATTTCAACT+TGG + chr5.2:52866273-52866292 None:intergenic 45.0%
CGCCAATTAGGGACATTAGA+AGG + chr5.2:52867603-52867622 None:intergenic 45.0%
CTGTCCTGTTAAGTGATACC+GGG - chr5.2:52866734-52866753 MS.gene035907:CDS 45.0%
GATCTTGCCGAAGCTTAACT+TGG - chr5.2:52867113-52867132 MS.gene035907:intron 45.0%
GATGAGATTGTTTCAGCCTC+AGG - chr5.2:52867551-52867570 MS.gene035907:intron 45.0%
GCAAGATCAAGTCAACGCAA+GGG + chr5.2:52867101-52867120 None:intergenic 45.0%
GGAATTGGCGGTGAAAAACA+TGG - chr5.2:52867383-52867402 MS.gene035907:intron 45.0%
GTTAGTCCCATATGTTGGCA+TGG + chr5.2:52869205-52869224 None:intergenic 45.0%
GTTGGAATATGCCGGAAAAG+TGG - chr5.2:52867327-52867346 MS.gene035907:intron 45.0%
TAACCTGCCAAGGATTGACA+CGG + chr5.2:52868423-52868442 None:intergenic 45.0%
TAGCTTCGGAATCTTGACTG+AGG + chr5.2:52866836-52866855 None:intergenic 45.0%
TCAGCTGGGAAGATATTCGT+TGG - chr5.2:52867309-52867328 MS.gene035907:intron 45.0%
TCTAACCCATGCATCATGCA+TGG + chr5.2:52868728-52868747 None:intergenic 45.0%
TCTATGATCCCTTCAACACC+GGG - chr5.2:52868510-52868529 MS.gene035907:CDS 45.0%
TGAGATTGTTTCAGCCTCAG+GGG - chr5.2:52867553-52867572 MS.gene035907:intron 45.0%
TGCCAAGGATTGACACAGTT+TGG + chr5.2:52866637-52866656 None:intergenic 45.0%
TGTCCTGTTAAGTGATACCG+GGG - chr5.2:52866735-52866754 MS.gene035907:CDS 45.0%
TTCCATCCTCACTCCTGTAA+CGG - chr5.2:52866942-52866961 MS.gene035907:CDS 45.0%
! AATGTTTGGTTCCAGGATCC+CGG + chr5.2:52868531-52868550 None:intergenic 45.0%
! AGTCTAGGCCTTTTTGTTGG+GGG + chr5.2:52868462-52868481 None:intergenic 45.0%
! CAGAAGAATTGGGTGTCATG+GGG + chr5.2:52867928-52867947 None:intergenic 45.0%
! CATGGTTCTACGAGTACTCT+TGG - chr5.2:52868871-52868890 MS.gene035907:intron 45.0%
! GCAAGTCTAGGCCTTTTTGT+TGG + chr5.2:52868465-52868484 None:intergenic 45.0%
! TTCTGGCTGAGGTAAACTCT+TGG + chr5.2:52866207-52866226 None:intergenic 45.0%
!! CAAGAGGTTGTGTTGCTTCT+TGG + chr5.2:52867972-52867991 None:intergenic 45.0%
!! CTGTTACCTTCCCACTTTTC+CGG + chr5.2:52867341-52867360 None:intergenic 45.0%
!! GACACCTTTTTAGTAGGGGA+TGG - chr5.2:52867226-52867245 MS.gene035907:intron 45.0%
AAACCGTGTCAATCCTTGGC+AGG - chr5.2:52868417-52868436 MS.gene035907:CDS 50.0%
ACCATTCCCCCCCAACAAAA+AGG - chr5.2:52868451-52868470 MS.gene035907:CDS 50.0%
ACCTGAAGCATGCGCCAATT+AGG + chr5.2:52867615-52867634 None:intergenic 50.0%
AGAGAAGGCGGTTATGGATG+CGG - chr5.2:52867359-52867378 MS.gene035907:intron 50.0%
ATCCGTTACAGGAGTGAGGA+TGG + chr5.2:52866947-52866966 None:intergenic 50.0%
CAGTACACGCATATCTACCG+CGG - chr5.2:52867192-52867211 MS.gene035907:intron 50.0%
CCTGAAGCATGCGCCAATTA+GGG + chr5.2:52867614-52867633 None:intergenic 50.0%
CTCTCCGTCACTGACATTCA+AGG - chr5.2:52867159-52867178 MS.gene035907:intron 50.0%
CTGGAGGAGCTTCTTGTTCA+TGG + chr5.2:52866978-52866997 None:intergenic 50.0%
GAGCTTCTTGTTCATGGCCA+TGG + chr5.2:52866972-52866991 None:intergenic 50.0%
GAGTGGAGAGGAACATGATG+CGG + chr5.2:52868776-52868795 None:intergenic 50.0%
GGCAAGATCAAGTCAACGCA+AGG + chr5.2:52867102-52867121 None:intergenic 50.0%
GGTAACAGAGAAGGCGGTTA+TGG - chr5.2:52867353-52867372 MS.gene035907:intron 50.0%
GGTGTCTCTTGGATTTACCG+CGG + chr5.2:52867212-52867231 None:intergenic 50.0%
GGTTATGGATGCGGTGGAAT+TGG - chr5.2:52867368-52867387 MS.gene035907:intron 50.0%
GTGGATACAGTAACCTGCCA+AGG + chr5.2:52868433-52868452 None:intergenic 50.0%
GTTACAGGAGTGAGGATGGA+AGG + chr5.2:52866943-52866962 None:intergenic 50.0%
TATGCGTGTACTGCCAGACT+CGG + chr5.2:52867185-52867204 None:intergenic 50.0%
TATGGATGCGGTGGAATTGG+CGG - chr5.2:52867371-52867390 MS.gene035907:intron 50.0%
TCGGCCTTGAATGTCAGTGA+CGG + chr5.2:52867166-52867185 None:intergenic 50.0%
TGCCAAGGATTGACACGGTT+TGG + chr5.2:52868418-52868437 None:intergenic 50.0%
TGGGAAGGTAACAGAGAAGG+CGG - chr5.2:52867347-52867366 MS.gene035907:intron 50.0%
! ACATCTGAGATTGTCCCCTG+AGG + chr5.2:52867570-52867589 None:intergenic 50.0%
! ATCCTCACTCCTGTAACGGA+TGG - chr5.2:52866946-52866965 MS.gene035907:CDS 50.0%
! GTCTAGGCCTTTTTGTTGGG+GGG + chr5.2:52868461-52868480 None:intergenic 50.0%
! TCTAGGCCTTTTTGTTGGGG+GGG + chr5.2:52868460-52868479 None:intergenic 50.0%
! TTTTTGTTGGGGGGGAATGG+TGG + chr5.2:52868452-52868471 None:intergenic 50.0%
!! CTGCCAGATTTTGGTAGGGA+TGG + chr5.2:52866800-52866819 None:intergenic 50.0%
!!! CGTTTTGGCTTGTGAGTGAG+AGG + chr5.2:52868815-52868834 None:intergenic 50.0%
ACAGAGCTCTCAGCACGTCT+AGG + chr5.2:52866718-52866737 None:intergenic 55.0%
ACAGGAGTGAGGATGGAAGG+AGG + chr5.2:52866940-52866959 None:intergenic 55.0%
AGAAGTTCCTGCCGAAGACG+AGG - chr5.2:52866996-52867015 MS.gene035907:intron 55.0%
CCCTAATTGGCGCATGCTTC+AGG - chr5.2:52867611-52867630 MS.gene035907:intron 55.0%
CGGTTTGTGCGAACCAATCG+TGG - chr5.2:52868953-52868972 MS.gene035907:intron 55.0%
CTACTGCACTCTCATGCGCA+TGG - chr5.2:52868853-52868872 MS.gene035907:intron 55.0%
CTGACATTCAAGGCCGAGTC+TGG - chr5.2:52867169-52867188 MS.gene035907:intron 55.0%
GAACACGAGCAGCAAGAGAG+TGG + chr5.2:52868793-52868812 None:intergenic 55.0%
GAAGGGGTCTGCAGAACTCT+GGG + chr5.2:52868487-52868506 None:intergenic 55.0%
GCAGAACTCTGGGCAAGTCT+AGG + chr5.2:52868477-52868496 None:intergenic 55.0%
GCTCCCCGGTATCACTTAAC+AGG + chr5.2:52866741-52866760 None:intergenic 55.0%
TCGTCTTCGGCAGGAACTTC+TGG + chr5.2:52866997-52867016 None:intergenic 55.0%
TCTTCGGCAGGAACTTCTGG+AGG + chr5.2:52866994-52867013 None:intergenic 55.0%
TGAAGGGGTCTGCAGAACTC+TGG + chr5.2:52868488-52868507 None:intergenic 55.0%
TGCTTCGGAATGTAGCTCCC+CGG + chr5.2:52866755-52866774 None:intergenic 55.0%
! GCCTTTTTGTTGGGGGGGAA+TGG + chr5.2:52868455-52868474 None:intergenic 55.0%
! TCCAGGATCCCGGTGTTGAA+GGG + chr5.2:52868521-52868540 None:intergenic 55.0%
! TTCCAGGATCCCGGTGTTGA+AGG + chr5.2:52868522-52868541 None:intergenic 55.0%
!! ACTCCTGTAACGGATGGCCA+TGG - chr5.2:52866952-52866971 MS.gene035907:CDS 55.0%
!! GGTTCGCACAAACCGATTCG+CGG + chr5.2:52868948-52868967 None:intergenic 55.0%
!! GTGACGGAGAGTGTCTGAGA+TGG + chr5.2:52867150-52867169 None:intergenic 55.0%
CGAGCAGCAAGAGAGTGGAG+AGG + chr5.2:52868788-52868807 None:intergenic 60.0%
CGCGGGTGCAACACATTCGT+CGG - chr5.2:52869086-52869105 MS.gene035907:intron 60.0%
CTGCATGAATGCAGGGAGCC+AGG - chr5.2:52868570-52868589 MS.gene035907:CDS 60.0%
CTGGCTCCCTGCATTCATGC+AGG + chr5.2:52868572-52868591 None:intergenic 60.0%
GAAGGCGGTTATGGATGCGG+TGG - chr5.2:52867362-52867381 MS.gene035907:intron 60.0%
GGCCATCCGTTACAGGAGTG+AGG + chr5.2:52866951-52866970 None:intergenic 60.0%
GTTCCTGCCGAAGACGAGGA+TGG - chr5.2:52867000-52867019 MS.gene035907:intron 60.0%
TCCCTTCAACACCGGGATCC+TGG - chr5.2:52868517-52868536 MS.gene035907:CDS 60.0%
TGGCCATGGCCATCCGTTAC+AGG + chr5.2:52866958-52866977 None:intergenic 60.0%
TTGCCATCCTCGTCTTCGGC+AGG + chr5.2:52867006-52867025 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 52866035 52869330 52866035 ID=MS.gene035907
chr5.2 mRNA 52866035 52869330 52866035 ID=MS.gene035907.t1;Parent=MS.gene035907
chr5.2 exon 52869316 52869330 52869316 ID=MS.gene035907.t1.exon1;Parent=MS.gene035907.t1
chr5.2 CDS 52869316 52869330 52869316 ID=cds.MS.gene035907.t1;Parent=MS.gene035907.t1
chr5.2 exon 52867733 52868764 52867733 ID=MS.gene035907.t1.exon2;Parent=MS.gene035907.t1
chr5.2 CDS 52867733 52868764 52867733 ID=cds.MS.gene035907.t1;Parent=MS.gene035907.t1
chr5.2 exon 52866927 52866983 52866927 ID=MS.gene035907.t1.exon3;Parent=MS.gene035907.t1
chr5.2 CDS 52866927 52866983 52866927 ID=cds.MS.gene035907.t1;Parent=MS.gene035907.t1
chr5.2 exon 52866691 52866781 52866691 ID=MS.gene035907.t1.exon4;Parent=MS.gene035907.t1
chr5.2 CDS 52866691 52866781 52866691 ID=cds.MS.gene035907.t1;Parent=MS.gene035907.t1
chr5.2 exon 52866035 52866048 52866035 ID=MS.gene035907.t1.exon5;Parent=MS.gene035907.t1
chr5.2 CDS 52866035 52866048 52866035 ID=cds.MS.gene035907.t1;Parent=MS.gene035907.t1
Gene Sequence

>MS.gene035907

ATGTCTTCTCCTTGGGTTTGTATTAGTTAATAAAATCTGCTTTGCTTTTCCAAAATAACTTAGGATTTCTTAATTACATTGTTATGAGTCCTACCATACCAAATTAAGTTCAATGACTTTAGCAACTTTATACTCAAATGATGCTATTCTTTAAGAAGTTGAAATAGTTCCAAGAGTTTACCTCAGCCAGAATTCCGAATTTATGTGACTGCCTAGTTTGCATTAAGAATTAATTCCAAGTTGAAATGGTTCCCTGTGCCTTAAGAATTCATCAGATAATGTGTATGTAAGCAGATTACATTTTACAATCAATTGTTTATGTTAGACTTTTTTTATATGTCACTGCCTACGTAACTTGCTCCAATAGTGATATTTTCTAAGAAACAGTTATGAAGTTTAAAAACTTTCTAATTATTTCTCGTTGTAAATATTCTTAATGCTAAGTATGATCTTGATTTTGAATTGCATGTTAATAATTATTAATAAACATTTGATGTGTAAATACATACTATTTCAAATGACTGATGTTGGATTCTTACCATTTTTTTTATATCTTTTGATCATAGGTTAACTGGGATGAACCTGAAATCTCGAAGATTCCAAACTGTGTCAATCCTTGGCAGGTTGAACTTATTCACCACAAAGCTGAACTGTATATACAATCCCCCCCAAATAAAAATCCTAGACGTGCTGAGAGCTCTGTCCTGTTAAGTGATACCGGGGAGCTACATTCCGAAGCATTCCCCACAAAATCTATATTTACCATCCCTACCAAAATCTGGCAGAAATGTGCTGGAGCCTCAGTCAAGATTCCGAAGCTACATTCTAAAGTTTACTACTTCCCACAAGGTCACTTAGAACATGTCTCCGCTCACACAATCATCACCCTTCTTCATCGTTATCCTCCTTCCATCCTCACTCCTGTAACGGATGGCCATGGCCATGAACAAGAAGCTCCTCCAGAAGTTCCTGCCGAAGACGAGGATGGCAACAATGTTGTTTCCTTTGTCAAGATTCTCACACAATCTGATTGCAATAGTGGCTATGGATTCATTGTATCTCTCCCTTGCGTTGACTTGATCTTGCCGAAGCTTAACTTGGACGATTCAATGCCATCTCAGACACTCTCCGTCACTGACATTCAAGGCCGAGTCTGGCAGTACACGCATATCTACCGCGGTAAATCCAAGAGACACCTTTTTAGTAGGGGATGGACTTCATTTGTCAACAACAAGAAACTCGTCGCTGGTGATTCAGTTGTTTTCGTTAAAAACTCAGCTGGGAAGATATTCGTTGGAATATGCCGGAAAAGTGGGAAGGTAACAGAGAAGGCGGTTATGGATGCGGTGGAATTGGCGGTGAAAAACATGGCATTTGAAGTTTTGTATTATCCGAGAGCGAATTGGTTTGATTTTGTAGTGGATGCAAATGTTGTTGATGAAGCCATGAAGATTAGTTGGACATCTGGAATTCAAGTCAAGCTTCCTTTCAAGAAAGAAGAATCTTCAAATTCAAAGATGAGATTGTTTCAGCCTCAGGGGACAATCTCAGATGTTTCTAATGCTCCTTCTAATGTCCCTAATTGGCGCATGCTTCAGGTACATACGCTTTCTTCTTTTGGTCTTATTATATTTCAAGTGCATAATGTTATCTAGTACTACTTTTGTTTGAAAATAAATATTACAGTTCAAATTTATAGTTGGTACAATGTTGAATCCACAATTCAATGATTTCTTTGATAAGTATTAGTGTTGAAGTTAATGCATGATTGATTTAGATGTCGAAACCACAATTAGAAGATGAATGATGAAAGGGAATACTAAAATTGTTGTGATGTATAGCTTTGTGCCCTATAGGATAAGATTCAAATGTAATTCTAAGATCAAGGGACCCCATGACACCCAATTCTTCTGTATGCTTCTTTCTTTTGATCACCAAGAAGCAACACAACCTCTTGATCACAAAGAATTTTGCAGCATTGAGGTCCCAAAAAACATAAACAGCTTTTTAACCTTCCAGTTATATTTAGTTTCCCTTTCTGGGATTTTTAATGAATTTTGCAACTTTATACTCAAACGATGCAATTCTTTATGAAATTGTTTATATCAGACCCGTTTTCATCATTGACCACCTAAATAACTATCTCCAATAGTGATATTCTCTAAGAAACAGTTATGAAGTTTAAGAACTTTCTAAAAAATTATTGTTGTAAATACTCTTAATGCTTAATAGGATCTTGATTGTGACTCGCATGTTATTAATTGATAATAAACATTTGATATGTAAATACATACTATTTCGAATGACTGTGTTGGATTCTTGCCATATTTTTATCTCTTTATTATAGGTTAAGTGGGATGAACCTGAAATCTCGCAGAATCCAAACCGTGTCAATCCTTGGCAGGTTACTGTATCCACCATTCCCCCCCAACAAAAAGGCCTAGACTTGCCCAGAGTTCTGCAGACCCCTTCATTTCTATGATCCCTTCAACACCGGGATCCTGGAACCAAACATTGTTAACTGTGATACTTTTCCTGCATGAATGCAGGGAGCCAGGCATGATCATCTATCTGAATCAGGCTCTTCGAACTTTTTGATTGATAGGGATGATGGTTTCTTTGGGAATAGTTTAATGGCAGGTTTGAGTAGTACTGTGTCGGACAACTTATATACAAAAATTCTACAAAAACCATGCATGATGCATGGGTTAGACTAGTTATAACATAAAGTGAAACAGCCGCATCATGTTCCTCTCCACTCTCTTGCTGCTCGTGTTCCTCTCACTCACAAGCCAAAACGTCCGCTACTAAAAGTCGTCTACTGCACTCTCATGCGCATGGTTCTACGAGTACTCTTGGTTCGCCTTTTTCTACGAATTTTTTCACGATAGGAACCAATACAAGAAAGTACCGCGAATCGGTTTGTGCGAACCAATCGTGGTTCTCTAGTCAATCCAACAAATTTTGTAACTATGATTTAAAATTCTACAAACAAAATTGGCACATATGATATATCACTATTCTAAATCAAATCAAATAACAAAATTATTTCGCGGGTGCAACACATTCGTCGGTCGTCACAATCTATAGTTCTGATCTAATGCTAAAACCAACAAAGCCAACATGCATATTATAAAACCTATTTGAGTGATTTTGGGTATCAAATTCCATGCCAACATATGGGACTAACGCTTTCAAAGAACTCTTCTACATTTCCTTTATTCATCAACAAACCTATTAATTCCTTTTTTTTCTAATGTGATTTTTGTGTTTTTCCCTCAGACACAACGGAATAA
Protein sequence

>MS.gene035907.t1

MSSPWVNWDEPEISKIPNCVNPWQVELIHHKAELYIQSPPNKNPRRAESSVLLSDTGELHSEAFPTKSIFTIPTKIWQKCAGASVKIPKLHSKVYYFPQGHLEHVSAHTIITLLHRYPPSILTPVTDGHGHEQEAPPEVPAEDEDGNNVVSFVKILTQSDCNSGYGFIVSLPCVDLILPKLNLDDSMPSQTLSVTDIQGRVWQYTHIYRGKSKRHLFSRGWTSFVNNKKLVAGDSVVFVKNSAGKIFVGICRKSGKVTEKAVMDAVELAVKNMAFEVLYYPRANWFDFVVDANVVDEAMKISWTSGIQVKLPFKKEESSNSKMRLFQPQGTISDVSNAPSNVPNWRMLQVKWDEPEISQNPNRVNPWQGARHDHLSESGSSNFLIDRDDGFFGNSLMADTTE