Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035915.t1 | XP_024632961.1 | 80.1 | 799 | 107 | 5 | 1 | 747 | 1 | 799 | 0.00E+00 | 1251.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035915.t1 | Q9SZL8 | 25.5 | 600 | 381 | 12 | 44 | 641 | 102 | 637 | 4.8e-52 | 207.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035915.t1 | D3YBB9 | 73.3 | 774 | 163 | 5 | 1 | 740 | 49 | 812 | 0.0e+00 | 1116.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene035915.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035915.t1 | MTR_0558s0020 | 76.689 | 296 | 44 | 2 | 1 | 271 | 1 | 296 | 2.04e-158 | 461 |
MS.gene035915.t1 | MTR_8g446020 | 76.015 | 271 | 50 | 2 | 1 | 271 | 1 | 256 | 2.43e-141 | 415 |
MS.gene035915.t1 | MTR_1g083640 | 72.183 | 284 | 39 | 2 | 1 | 244 | 1 | 284 | 1.08e-138 | 410 |
MS.gene035915.t1 | MTR_6g090505 | 80.258 | 233 | 46 | 0 | 45 | 277 | 5 | 237 | 9.20e-131 | 392 |
MS.gene035915.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 372 | 471 | 230 | 306 | 6.28e-34 | 134 |
MS.gene035915.t1 | MTR_6g090505 | 77.551 | 49 | 11 | 0 | 543 | 591 | 314 | 362 | 2.40e-11 | 66.6 |
MS.gene035915.t1 | MTR_0337s0040 | 73.305 | 236 | 47 | 2 | 1 | 235 | 1 | 221 | 3.52e-113 | 342 |
MS.gene035915.t1 | MTR_2g014100 | 70.612 | 245 | 39 | 2 | 1 | 212 | 1 | 245 | 3.80e-113 | 343 |
MS.gene035915.t1 | MTR_0337s0060 | 58.861 | 316 | 30 | 4 | 423 | 735 | 21 | 239 | 1.13e-108 | 330 |
MS.gene035915.t1 | MTR_3g008240 | 70.443 | 203 | 35 | 2 | 1 | 178 | 1 | 203 | 8.48e-89 | 278 |
MS.gene035915.t1 | MTR_4g040430 | 69.307 | 202 | 34 | 2 | 1 | 178 | 1 | 198 | 8.98e-87 | 272 |
MS.gene035915.t1 | MTR_1g055240 | 85.915 | 142 | 20 | 0 | 67 | 208 | 3 | 144 | 5.47e-83 | 260 |
MS.gene035915.t1 | MTR_0019s0290 | 80.263 | 152 | 30 | 0 | 58 | 209 | 9 | 160 | 1.10e-81 | 257 |
MS.gene035915.t1 | MTR_3g028680 | 79.618 | 157 | 29 | 1 | 594 | 747 | 1 | 157 | 1.17e-80 | 256 |
MS.gene035915.t1 | MTR_2g067090 | 77.922 | 154 | 31 | 1 | 597 | 747 | 99 | 252 | 5.76e-74 | 242 |
MS.gene035915.t1 | MTR_4g133495 | 63.187 | 182 | 41 | 2 | 552 | 730 | 88 | 246 | 2.45e-66 | 221 |
MS.gene035915.t1 | MTR_4g133340 | 63.187 | 182 | 41 | 2 | 552 | 730 | 88 | 246 | 2.45e-66 | 221 |
MS.gene035915.t1 | MTR_5g071590 | 58.889 | 180 | 37 | 3 | 1 | 143 | 1 | 180 | 5.41e-61 | 203 |
MS.gene035915.t1 | MTR_6g051425 | 31.502 | 273 | 159 | 5 | 61 | 317 | 64 | 324 | 2.90e-32 | 128 |
MS.gene035915.t1 | MTR_1281s0010 | 55.963 | 109 | 24 | 1 | 19 | 103 | 1 | 109 | 1.85e-31 | 119 |
MS.gene035915.t1 | MTR_2g067130 | 67.123 | 73 | 18 | 2 | 678 | 747 | 53 | 122 | 5.28e-21 | 90.9 |
MS.gene035915.t1 | MTR_0337s0050 | 75.000 | 36 | 9 | 0 | 235 | 270 | 14 | 49 | 1.50e-13 | 67.0 |
MS.gene035915.t1 | MTR_4g008820 | 46.000 | 100 | 29 | 2 | 1 | 75 | 125 | 224 | 3.70e-12 | 70.1 |
MS.gene035915.t1 | MTR_1g070355 | 24.068 | 295 | 206 | 5 | 48 | 338 | 104 | 384 | 4.37e-12 | 69.7 |
MS.gene035915.t1 | MTR_0402s0040 | 27.119 | 118 | 85 | 1 | 92 | 209 | 89 | 205 | 3.15e-11 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035915.t1 | AT4G38180 | 25.768 | 586 | 355 | 12 | 65 | 641 | 123 | 637 | 2.72e-59 | 215 |
MS.gene035915.t1 | AT4G15090 | 25.361 | 623 | 396 | 13 | 99 | 717 | 121 | 678 | 1.35e-54 | 202 |
MS.gene035915.t1 | AT4G15090 | 25.361 | 623 | 396 | 13 | 99 | 717 | 121 | 678 | 1.35e-54 | 202 |
MS.gene035915.t1 | AT4G15090 | 25.361 | 623 | 396 | 13 | 99 | 717 | 121 | 678 | 1.35e-54 | 202 |
MS.gene035915.t1 | AT4G15090 | 25.361 | 623 | 396 | 13 | 99 | 717 | 121 | 678 | 1.35e-54 | 202 |
MS.gene035915.t1 | AT4G15090 | 25.361 | 623 | 396 | 13 | 99 | 717 | 121 | 678 | 1.35e-54 | 202 |
MS.gene035915.t1 | AT1G76320 | 24.751 | 602 | 380 | 13 | 100 | 696 | 65 | 598 | 3.48e-46 | 176 |
MS.gene035915.t1 | AT1G76320 | 24.792 | 601 | 379 | 13 | 100 | 695 | 65 | 597 | 8.93e-46 | 175 |
MS.gene035915.t1 | AT1G76320 | 24.792 | 601 | 379 | 13 | 100 | 695 | 65 | 597 | 8.93e-46 | 175 |
MS.gene035915.t1 | AT1G76320 | 24.792 | 601 | 379 | 13 | 100 | 695 | 65 | 597 | 1.12e-45 | 175 |
MS.gene035915.t1 | AT2G27110 | 24.833 | 600 | 371 | 15 | 103 | 695 | 108 | 634 | 1.30e-45 | 176 |
MS.gene035915.t1 | AT2G27110 | 24.833 | 600 | 371 | 15 | 103 | 695 | 108 | 634 | 1.30e-45 | 176 |
MS.gene035915.t1 | AT2G27110 | 25.781 | 512 | 317 | 11 | 189 | 695 | 36 | 489 | 2.02e-45 | 174 |
MS.gene035915.t1 | AT3G06250 | 25.322 | 466 | 288 | 10 | 175 | 637 | 295 | 703 | 3.43e-43 | 167 |
MS.gene035915.t1 | AT3G06250 | 25.322 | 466 | 288 | 10 | 175 | 637 | 295 | 703 | 3.43e-43 | 167 |
MS.gene035915.t1 | AT3G06250 | 25.322 | 466 | 288 | 10 | 175 | 637 | 295 | 703 | 3.43e-43 | 167 |
MS.gene035915.t1 | AT3G22170 | 25.150 | 501 | 292 | 13 | 186 | 672 | 216 | 647 | 7.32e-42 | 164 |
MS.gene035915.t1 | AT3G22170 | 25.150 | 501 | 292 | 13 | 186 | 672 | 216 | 647 | 7.32e-42 | 164 |
MS.gene035915.t1 | AT4G38170 | 23.953 | 430 | 269 | 12 | 211 | 637 | 24 | 398 | 1.69e-40 | 157 |
MS.gene035915.t1 | AT1G10240 | 24.602 | 565 | 352 | 17 | 83 | 635 | 102 | 604 | 8.25e-39 | 154 |
MS.gene035915.t1 | AT1G10240 | 24.602 | 565 | 352 | 17 | 83 | 635 | 102 | 604 | 8.25e-39 | 154 |
MS.gene035915.t1 | AT5G18960 | 24.330 | 485 | 296 | 13 | 160 | 637 | 307 | 727 | 2.89e-37 | 150 |
MS.gene035915.t1 | AT5G18960 | 24.330 | 485 | 296 | 13 | 160 | 637 | 307 | 727 | 2.89e-37 | 150 |
MS.gene035915.t1 | AT5G28530 | 23.310 | 562 | 356 | 13 | 91 | 636 | 117 | 619 | 1.13e-35 | 144 |
MS.gene035915.t1 | AT2G32250 | 22.237 | 733 | 429 | 22 | 1 | 719 | 17 | 622 | 3.33e-35 | 143 |
MS.gene035915.t1 | AT2G32250 | 22.237 | 733 | 429 | 22 | 1 | 719 | 17 | 622 | 5.90e-35 | 142 |
MS.gene035915.t1 | AT2G32250 | 22.237 | 733 | 429 | 22 | 1 | 719 | 17 | 622 | 5.90e-35 | 142 |
MS.gene035915.t1 | AT2G32250 | 22.237 | 733 | 429 | 22 | 1 | 719 | 17 | 622 | 5.90e-35 | 142 |
MS.gene035915.t1 | AT2G32250 | 22.237 | 733 | 429 | 22 | 1 | 719 | 17 | 622 | 6.58e-35 | 142 |
MS.gene035915.t1 | AT2G32250 | 22.237 | 733 | 429 | 22 | 1 | 719 | 17 | 622 | 6.58e-35 | 142 |
MS.gene035915.t1 | AT5G28530 | 23.132 | 562 | 353 | 14 | 91 | 636 | 117 | 615 | 7.05e-35 | 142 |
MS.gene035915.t1 | AT5G28530 | 23.132 | 562 | 353 | 14 | 91 | 636 | 117 | 615 | 7.05e-35 | 142 |
MS.gene035915.t1 | AT2G32250 | 22.316 | 708 | 415 | 21 | 20 | 719 | 1 | 581 | 8.97e-35 | 142 |
MS.gene035915.t1 | AT2G32250 | 22.316 | 708 | 415 | 21 | 20 | 719 | 1 | 581 | 9.28e-35 | 142 |
MS.gene035915.t1 | AT1G80010 | 24.115 | 452 | 290 | 11 | 190 | 637 | 258 | 660 | 1.49e-30 | 129 |
MS.gene035915.t1 | AT1G52520 | 23.198 | 444 | 278 | 13 | 203 | 636 | 246 | 636 | 4.54e-28 | 120 |
MS.gene035915.t1 | AT4G19990 | 27.239 | 268 | 188 | 4 | 195 | 459 | 106 | 369 | 4.33e-25 | 111 |
MS.gene035915.t1 | AT4G19990 | 38.614 | 101 | 48 | 3 | 567 | 665 | 438 | 526 | 9.08e-13 | 72.4 |
MS.gene035915.t1 | AT4G19990 | 27.239 | 268 | 188 | 4 | 195 | 459 | 163 | 426 | 4.34e-25 | 111 |
MS.gene035915.t1 | AT4G19990 | 38.614 | 101 | 48 | 3 | 567 | 665 | 495 | 583 | 9.49e-13 | 72.4 |
MS.gene035915.t1 | AT4G19990 | 27.239 | 268 | 188 | 4 | 195 | 459 | 163 | 426 | 4.50e-25 | 111 |
MS.gene035915.t1 | AT4G19990 | 38.614 | 101 | 48 | 3 | 567 | 665 | 495 | 583 | 8.95e-13 | 72.4 |
MS.gene035915.t1 | AT4G19990 | 27.239 | 268 | 188 | 4 | 195 | 459 | 163 | 426 | 4.50e-25 | 111 |
MS.gene035915.t1 | AT4G19990 | 38.614 | 101 | 48 | 3 | 567 | 665 | 495 | 583 | 8.95e-13 | 72.4 |
MS.gene035915.t1 | AT4G19990 | 27.239 | 268 | 188 | 4 | 195 | 459 | 177 | 440 | 4.92e-25 | 111 |
MS.gene035915.t1 | AT4G19990 | 38.614 | 101 | 48 | 3 | 567 | 665 | 509 | 597 | 9.61e-13 | 72.4 |
MS.gene035915.t1 | AT4G19990 | 27.239 | 268 | 188 | 4 | 195 | 459 | 163 | 426 | 5.80e-25 | 111 |
MS.gene035915.t1 | AT4G19990 | 38.614 | 101 | 48 | 3 | 567 | 665 | 495 | 583 | 8.80e-13 | 72.4 |
MS.gene035915.t1 | AT4G19990 | 27.239 | 268 | 188 | 4 | 195 | 459 | 163 | 426 | 5.80e-25 | 111 |
MS.gene035915.t1 | AT4G19990 | 38.614 | 101 | 48 | 3 | 567 | 665 | 495 | 583 | 8.80e-13 | 72.4 |
MS.gene035915.t1 | AT5G28530 | 20.833 | 552 | 319 | 16 | 91 | 636 | 117 | 556 | 2.59e-19 | 93.2 |
MS.gene035915.t1 | AT5G28530 | 20.652 | 552 | 316 | 17 | 91 | 636 | 117 | 552 | 1.24e-18 | 90.9 |
Find 116 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5.2:-52626434 | MS.gene035915:CDS |
AGTTGCTTCTTTGACCTAAT+TGG | 0.173798 | 5.2:+52625299 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5.2:-52626167 | MS.gene035915:CDS |
TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 5.2:-52626715 | MS.gene035915:intron |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.2:-52627227 | MS.gene035915:CDS |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5.2:-52626682 | MS.gene035915:CDS |
TTCTTTGACCTAATTGGATT+TGG | 0.276956 | 5.2:+52625305 | None:intergenic |
TACGGTTTGAGGTTTCTTAT+TGG | 0.280828 | 5.2:+52626588 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5.2:-52626393 | MS.gene035915:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5.2:-52625453 | MS.gene035915:CDS |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.2:+52627177 | None:intergenic |
GAGGGATAATCATGCTGATT+TGG | 0.346844 | 5.2:-52626134 | MS.gene035915:CDS |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 5.2:-52625870 | MS.gene035915:CDS |
ACCAGCCTGGTCTGTGTATA+CGG | 0.360739 | 5.2:+52626570 | None:intergenic |
GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 5.2:+52625577 | None:intergenic |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5.2:-52625461 | MS.gene035915:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.2:-52627170 | MS.gene035915:intron |
TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 5.2:-52626125 | MS.gene035915:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.2:-52627178 | MS.gene035915:CDS |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5.2:+52627707 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 5.2:-52625313 | MS.gene035915:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5.2:+52625323 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 5.2:-52625993 | MS.gene035915:CDS |
GAGGAGTTTCTTCTTTCTAA+AGG | 0.401366 | 5.2:-52625428 | MS.gene035915:CDS |
CCATGATTCTTTATCACTAA+AGG | 0.406174 | 5.2:+52627945 | None:intergenic |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5.2:-52627935 | MS.gene035915:intron |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5.2:-52625745 | MS.gene035915:CDS |
GACTATGATCTTCAAACCTT+GGG | 0.413412 | 5.2:+52625822 | None:intergenic |
TGGTCTGTGTATACGGTTTG+AGG | 0.418412 | 5.2:+52626577 | None:intergenic |
TACATGTGTTTGCGCAGATT+CGG | 0.426969 | 5.2:-52625501 | MS.gene035915:CDS |
TGTCTTCTGCAGCATGAACT+TGG | 0.428471 | 5.2:+52627282 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.2:-52627530 | MS.gene035915:CDS |
TGGTCTTTGCTTATGGCACA+TGG | 0.432686 | 5.2:-52626503 | MS.gene035915:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.2:-52627648 | MS.gene035915:CDS |
GGGTTGTCATAGTCGACATT+AGG | 0.437838 | 5.2:-52625787 | MS.gene035915:CDS |
TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5.2:-52627616 | MS.gene035915:CDS |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.2:-52627665 | MS.gene035915:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5.2:+52625644 | None:intergenic |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5.2:-52627500 | MS.gene035915:CDS |
TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 5.2:-52626293 | MS.gene035915:CDS |
ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5.2:-52628010 | MS.gene035915:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5.2:-52626339 | MS.gene035915:CDS |
CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 5.2:+52627560 | None:intergenic |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5.2:-52625744 | MS.gene035915:CDS |
CAATTCACAAAATAAGAAAT+CGG | 0.467278 | 5.2:-52627822 | MS.gene035915:CDS |
GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 5.2:-52626294 | MS.gene035915:CDS |
CGACTATGATCTTCAAACCT+TGG | 0.482197 | 5.2:+52625821 | None:intergenic |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5.2:+52625991 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.2:+52627671 | None:intergenic |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 5.2:-52625352 | MS.gene035915:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5.2:-52627387 | MS.gene035915:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5.2:-52625977 | MS.gene035915:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.2:+52626702 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5.2:-52626392 | MS.gene035915:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.2:-52627374 | MS.gene035915:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5.2:-52626153 | MS.gene035915:CDS |
CGCAAACACATGTAGAAAGC+TGG | 0.494885 | 5.2:+52625510 | None:intergenic |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5.2:+52626073 | None:intergenic |
ATTGGTCTTCAGCTTGGGTG+AGG | 0.501327 | 5.2:-52626288 | MS.gene035915:CDS |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 5.2:-52625353 | MS.gene035915:CDS |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5.2:-52626306 | MS.gene035915:CDS |
TAACAAAGAAGGTTTCAAGA+AGG | 0.512865 | 5.2:-52627771 | MS.gene035915:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.516832 | 5.2:+52625828 | None:intergenic |
TTTAAGTTCGAAAATCGAAA+AGG | 0.518694 | 5.2:+52627416 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5.2:+52626185 | None:intergenic |
TGTCTATAAGATATATAGGT+GGG | 0.523740 | 5.2:-52627612 | MS.gene035915:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.527542 | 5.2:-52627770 | MS.gene035915:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 5.2:+52625996 | None:intergenic |
CTGAAATCTACCATGAATGT+TGG | 0.534154 | 5.2:-52625587 | MS.gene035915:CDS |
TCATAGTCGACTTGATGAAA+GGG | 0.535918 | 5.2:-52625807 | MS.gene035915:CDS |
ATCATAGTCGACTTGATGAA+AGG | 0.538877 | 5.2:-52625808 | MS.gene035915:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5.2:+52626190 | None:intergenic |
AAAACAGCTTGAAAACCATT+CGG | 0.541620 | 5.2:+52626529 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5.2:-52625976 | MS.gene035915:CDS |
CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 5.2:-52627945 | MS.gene035915:CDS |
GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 5.2:-52627468 | MS.gene035915:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 5.2:+52627572 | None:intergenic |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5.2:+52626557 | None:intergenic |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.2:-52627320 | MS.gene035915:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5.2:-52627986 | MS.gene035915:CDS |
ACTTCAAGGCTGCAAACACT+AGG | 0.573822 | 5.2:-52626111 | MS.gene035915:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5.2:+52626072 | None:intergenic |
TTGAAGAAAACCTTTCCCCA+AGG | 0.580876 | 5.2:-52625838 | MS.gene035915:CDS |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 5.2:+52625341 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5.2:+52626051 | None:intergenic |
TCTTATGAAGTGATGGGTGA+AGG | 0.589029 | 5.2:-52627461 | MS.gene035915:CDS |
ATGTGTTTGCGCAGATTCGG+AGG | 0.589972 | 5.2:-52625498 | MS.gene035915:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5.2:-52625460 | MS.gene035915:CDS |
GGGTGAAGGAGTTGGAGGCA+CGG | 0.590964 | 5.2:-52627447 | MS.gene035915:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 5.2:-52625465 | MS.gene035915:CDS |
GAAGTGATGGGTGAAGGAGT+TGG | 0.592392 | 5.2:-52627455 | MS.gene035915:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5.2:+52625385 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5.2:-52627381 | MS.gene035915:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5.2:-52627378 | MS.gene035915:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.603217 | 5.2:+52625602 | None:intergenic |
TTGATATCGCTGTGCTTGAG+TGG | 0.604549 | 5.2:+52625553 | None:intergenic |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5.2:-52626075 | MS.gene035915:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5.2:-52625990 | MS.gene035915:CDS |
ACCGTATACACAGACCAGGC+TGG | 0.611318 | 5.2:-52626571 | MS.gene035915:CDS |
ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 5.2:-52628021 | MS.gene035915:CDS |
TTGTTGAAGTCAATTCCGAA+TGG | 0.619140 | 5.2:-52626544 | MS.gene035915:CDS |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5.2:+52627722 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5.2:+52626337 | None:intergenic |
GTGATGGGTGAAGGAGTTGG+AGG | 0.634903 | 5.2:-52627452 | MS.gene035915:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 5.2:-52627467 | MS.gene035915:CDS |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5.2:-52626152 | MS.gene035915:CDS |
ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5.2:-52627613 | MS.gene035915:CDS |
GGTCTTTGCTTATGGCACAT+GGG | 0.650838 | 5.2:-52626502 | MS.gene035915:CDS |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 5.2:+52626031 | None:intergenic |
TCAAACCGTATACACAGACC+AGG | 0.659801 | 5.2:-52626575 | MS.gene035915:CDS |
GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 5.2:-52625476 | MS.gene035915:CDS |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5.2:+52625726 | None:intergenic |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5.2:-52625743 | MS.gene035915:CDS |
ACTATGATCTTCAAACCTTG+GGG | 0.680285 | 5.2:+52625823 | None:intergenic |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 5.2:-52625892 | MS.gene035915:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 5.2:-52625891 | MS.gene035915:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAATTCACAAAATAAGAAAT+CGG | - | chr5.2:52625503-52625522 | MS.gene035915:CDS | 20.0% |
!! | TGAATGTCTATAAGATATAT+AGG | - | chr5.2:52625709-52625728 | MS.gene035915:CDS | 20.0% |
!! | TTTAATTATGCATATAACAC+TGG | - | chr5.2:52625448-52625467 | MS.gene035915:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr5.2:52626328-52626347 | MS.gene035915:CDS | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr5.2:52626961-52626980 | MS.gene035915:intron | 20.0% |
!!! | TCTTATTTTGTGAATTGTTT+TGG | + | chr5.2:52625500-52625519 | None:intergenic | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | - | chr5.2:52626300-52626319 | MS.gene035915:CDS | 20.0% |
! | ACCGAACAAACAATAAATAT+CGG | - | chr5.2:52626147-52626166 | MS.gene035915:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | + | chr5.2:52626173-52626192 | None:intergenic | 25.0% |
! | ATGTCTATAAGATATATAGG+TGG | - | chr5.2:52625712-52625731 | MS.gene035915:CDS | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | + | chr5.2:52627332-52627351 | None:intergenic | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | - | chr5.2:52627158-52627177 | MS.gene035915:intron | 25.0% |
! | TGAAAATTCAGTTATTGATG+CGG | - | chr5.2:52625339-52625358 | MS.gene035915:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | - | chr5.2:52626220-52626239 | MS.gene035915:CDS | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | + | chr5.2:52627297-52627316 | None:intergenic | 25.0% |
! | TGTCTATAAGATATATAGGT+GGG | - | chr5.2:52625713-52625732 | MS.gene035915:CDS | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | - | chr5.2:52627332-52627351 | MS.gene035915:CDS | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | - | chr5.2:52626891-52626910 | MS.gene035915:intron | 25.0% |
! | TTTCTATTTACACAACACAA+TGG | - | chr5.2:52626540-52626559 | MS.gene035915:CDS | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | - | chr5.2:52626320-52626339 | MS.gene035915:CDS | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | - | chr5.2:52626581-52626600 | MS.gene035915:CDS | 25.0% |
!! | TTTAAGTTCGAAAATCGAAA+AGG | + | chr5.2:52625912-52625931 | None:intergenic | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | - | chr5.2:52626060-52626079 | MS.gene035915:CDS | 25.0% |
!!! | AGACATAGCTAGTATTTTTT+GGG | - | chr5.2:52626061-52626080 | MS.gene035915:CDS | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | - | chr5.2:52627433-52627452 | MS.gene035915:CDS | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr5.2:52626327-52626346 | MS.gene035915:CDS | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr5.2:52625825-52625844 | MS.gene035915:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr5.2:52626965-52626984 | MS.gene035915:intron | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | - | chr5.2:52627434-52627453 | MS.gene035915:CDS | 25.0% |
AAAACAGCTTGAAAACCATT+CGG | + | chr5.2:52626799-52626818 | None:intergenic | 30.0% | |
AAACACATATGATCTTTCCA+TGG | + | chr5.2:52626391-52626410 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | - | chr5.2:52625555-52625574 | MS.gene035915:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | - | chr5.2:52626155-52626174 | MS.gene035915:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | - | chr5.2:52628012-52628031 | MS.gene035915:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | - | chr5.2:52626932-52626951 | MS.gene035915:intron | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | - | chr5.2:52625858-52625877 | MS.gene035915:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | - | chr5.2:52626933-52626952 | MS.gene035915:intron | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | + | chr5.2:52626626-52626645 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | - | chr5.2:52626098-52626117 | MS.gene035915:CDS | 30.0% | |
CACAAATTCTAAGCCAATAT+AGG | + | chr5.2:52626358-52626377 | None:intergenic | 30.0% | |
CCATGATTCTTTATCACTAA+AGG | + | chr5.2:52625383-52625402 | None:intergenic | 30.0% | |
CCTTTAGTGATAAAGAATCA+TGG | - | chr5.2:52625380-52625399 | MS.gene035915:CDS | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | + | chr5.2:52627337-52627356 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | - | chr5.2:52626259-52626278 | MS.gene035915:CDS | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | - | chr5.2:52627335-52627354 | MS.gene035915:CDS | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | - | chr5.2:52626847-52626866 | MS.gene035915:intron | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | + | chr5.2:52626151-52626170 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | - | chr5.2:52625644-52625663 | MS.gene035915:CDS | 30.0% | |
TAAAGAATCATGGAAGTCTT+TGG | - | chr5.2:52625390-52625409 | MS.gene035915:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | + | chr5.2:52627143-52627162 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | - | chr5.2:52625554-52625573 | MS.gene035915:CDS | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | + | chr5.2:52627277-52627296 | None:intergenic | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | + | chr5.2:52628023-52628042 | None:intergenic | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | + | chr5.2:52625756-52625775 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | - | chr5.2:52625677-52625696 | MS.gene035915:CDS | 30.0% |
! | CAAAGTTTTCACAATTGAGA+AGG | - | chr5.2:52627392-52627411 | MS.gene035915:CDS | 30.0% |
! | CGTTATGCTTTTAACAAAGA+AGG | - | chr5.2:52625543-52625562 | MS.gene035915:CDS | 30.0% |
! | GCATCTGAAATATTTCTCAA+CGG | - | chr5.2:52627849-52627868 | MS.gene035915:intron | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr5.2:52628005-52628024 | None:intergenic | 30.0% |
! | TTTTTCATGGTCTTTGCTTA+TGG | - | chr5.2:52626815-52626834 | MS.gene035915:intron | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | - | chr5.2:52627617-52627636 | MS.gene035915:CDS | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr5.2:52626234-52626253 | MS.gene035915:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | - | chr5.2:52627614-52627633 | MS.gene035915:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | - | chr5.2:52627682-52627701 | MS.gene035915:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | - | chr5.2:52627172-52627191 | MS.gene035915:CDS | 35.0% | |
ACTATGATCTTCAAACCTTG+GGG | + | chr5.2:52627505-52627524 | None:intergenic | 35.0% | |
AGTTGCTTCTTTGACCTAAT+TGG | + | chr5.2:52628029-52628048 | None:intergenic | 35.0% | |
ATAACACTGGATTCTCTGTT+AGG | - | chr5.2:52625461-52625480 | MS.gene035915:CDS | 35.0% | |
ATATCAACTTCATCTGAGAG+TGG | - | chr5.2:52625304-52625323 | MS.gene035915:CDS | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | - | chr5.2:52627173-52627192 | MS.gene035915:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | - | chr5.2:52625795-52625814 | MS.gene035915:CDS | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | - | chr5.2:52625643-52625662 | MS.gene035915:CDS | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | - | chr5.2:52627019-52627038 | MS.gene035915:intron | 35.0% | |
CTGAAATCTACCATGAATGT+TGG | - | chr5.2:52627738-52627757 | MS.gene035915:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | - | chr5.2:52625638-52625657 | MS.gene035915:CDS | 35.0% | |
GACTATGATCTTCAAACCTT+GGG | + | chr5.2:52627506-52627525 | None:intergenic | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | - | chr5.2:52625857-52625876 | MS.gene035915:CDS | 35.0% | |
GAGGAGTTTCTTCTTTCTAA+AGG | - | chr5.2:52627897-52627916 | MS.gene035915:intron | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | - | chr5.2:52625580-52625599 | MS.gene035915:CDS | 35.0% | |
GTTTATGGGTGATCCTATAT+TGG | - | chr5.2:52626342-52626361 | MS.gene035915:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | - | chr5.2:52625938-52625957 | MS.gene035915:CDS | 35.0% | |
TGGATATCACAGTAAAAACC+TGG | + | chr5.2:52626026-52626045 | None:intergenic | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | + | chr5.2:52625621-52625640 | None:intergenic | 35.0% | |
TTGTTGAAGTCAATTCCGAA+TGG | - | chr5.2:52626781-52626800 | MS.gene035915:intron | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | - | chr5.2:52626643-52626662 | MS.gene035915:CDS | 35.0% |
! | GGTTTCGAATGTTGATGTTT+TGG | - | chr5.2:52627455-52627474 | MS.gene035915:CDS | 35.0% |
! | TACGGTTTGAGGTTTCTTAT+TGG | + | chr5.2:52626740-52626759 | None:intergenic | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr5.2:52627102-52627121 | MS.gene035915:intron | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr5.2:52626240-52626259 | MS.gene035915:CDS | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | - | chr5.2:52626975-52626994 | MS.gene035915:intron | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr5.2:52627951-52627970 | None:intergenic | 35.0% |
!! | ATCATAGTCGACTTGATGAA+AGG | - | chr5.2:52627517-52627536 | MS.gene035915:CDS | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | + | chr5.2:52627684-52627703 | None:intergenic | 35.0% |
!! | TCATAGTCGACTTGATGAAA+GGG | - | chr5.2:52627518-52627537 | MS.gene035915:CDS | 35.0% |
!! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr5.2:52627624-52627643 | MS.gene035915:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | - | chr5.2:52626686-52626705 | MS.gene035915:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | - | chr5.2:52627685-52627704 | MS.gene035915:CDS | 35.0% |
!!! | GGTTTTCAAGCTGTTTTTCA+TGG | - | chr5.2:52626802-52626821 | MS.gene035915:intron | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | + | chr5.2:52627138-52627157 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | + | chr5.2:52626489-52626508 | None:intergenic | 40.0% | |
ATCTGAGAGTGGACAATTGA+CGG | - | chr5.2:52625315-52625334 | MS.gene035915:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | - | chr5.2:52627349-52627368 | MS.gene035915:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | - | chr5.2:52627581-52627600 | MS.gene035915:CDS | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | - | chr5.2:52627860-52627879 | MS.gene035915:intron | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | - | chr5.2:52627580-52627599 | MS.gene035915:CDS | 40.0% | |
CGACTATGATCTTCAAACCT+TGG | + | chr5.2:52627507-52627526 | None:intergenic | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | + | chr5.2:52627726-52627745 | None:intergenic | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | + | chr5.2:52627751-52627770 | None:intergenic | 40.0% | |
TACATGTGTTTGCGCAGATT+CGG | - | chr5.2:52627824-52627843 | MS.gene035915:CDS | 40.0% | |
TACATTTCAGCTGCCTTTCT+TGG | - | chr5.2:52626610-52626629 | MS.gene035915:CDS | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | - | chr5.2:52627348-52627367 | MS.gene035915:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | - | chr5.2:52626485-52626504 | MS.gene035915:CDS | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | - | chr5.2:52627487-52627506 | MS.gene035915:CDS | 40.0% | |
! | GAGGGATAATCATGCTGATT+TGG | - | chr5.2:52627191-52627210 | MS.gene035915:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr5.2:52627943-52627962 | None:intergenic | 40.0% |
!! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr5.2:52627627-52627646 | MS.gene035915:CDS | 40.0% |
!! | TATGCATTGGTCTTCAGCTT+GGG | - | chr5.2:52627032-52627051 | MS.gene035915:intron | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | + | chr5.2:52625594-52625613 | None:intergenic | 40.0% |
!! | TCATGCTGATTTGGACTTCA+AGG | - | chr5.2:52627200-52627219 | MS.gene035915:CDS | 40.0% |
!! | TCTTATGAAGTGATGGGTGA+AGG | - | chr5.2:52625864-52625883 | MS.gene035915:CDS | 40.0% |
!!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr5.2:52626068-52626087 | MS.gene035915:CDS | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | - | chr5.2:52625947-52625966 | MS.gene035915:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | - | chr5.2:52626005-52626024 | MS.gene035915:CDS | 45.0% | |
ACTTCAAGGCTGCAAACACT+AGG | - | chr5.2:52627214-52627233 | MS.gene035915:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | + | chr5.2:52625606-52625625 | None:intergenic | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | + | chr5.2:52626991-52627010 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | - | chr5.2:52627250-52627269 | MS.gene035915:CDS | 45.0% | |
ATTTGTGCTCTGTACAGCCA+TGG | - | chr5.2:52626371-52626390 | MS.gene035915:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | + | chr5.2:52627602-52627621 | None:intergenic | 45.0% | |
CGCAAACACATGTAGAAAGC+TGG | + | chr5.2:52627818-52627837 | None:intergenic | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | - | chr5.2:52627973-52627992 | MS.gene035915:CDS | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | - | chr5.2:52625648-52625667 | MS.gene035915:CDS | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | - | chr5.2:52625944-52625963 | MS.gene035915:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | + | chr5.2:52627500-52627519 | None:intergenic | 45.0% | |
GGGTTGTCATAGTCGACATT+AGG | - | chr5.2:52627538-52627557 | MS.gene035915:CDS | 45.0% | |
GGTCTTTGCTTATGGCACAT+GGG | - | chr5.2:52626823-52626842 | MS.gene035915:intron | 45.0% | |
TCAAACCGTATACACAGACC+AGG | - | chr5.2:52626750-52626769 | MS.gene035915:intron | 45.0% | |
TGGTCTGTGTATACGGTTTG+AGG | + | chr5.2:52626751-52626770 | None:intergenic | 45.0% | |
TGGTCTTTGCTTATGGCACA+TGG | - | chr5.2:52626822-52626841 | MS.gene035915:intron | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | - | chr5.2:52627582-52627601 | MS.gene035915:CDS | 45.0% | |
TGTCTTCTGCAGCATGAACT+TGG | + | chr5.2:52626046-52626065 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | - | chr5.2:52627872-52627891 | MS.gene035915:intron | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | + | chr5.2:52625657-52625676 | None:intergenic | 45.0% | |
TTGATATCGCTGTGCTTGAG+TGG | + | chr5.2:52627775-52627794 | None:intergenic | 45.0% | |
! | GTGAGGTCACATTTTACAGC+TGG | - | chr5.2:52627054-52627073 | MS.gene035915:intron | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr5.2:52625660-52625679 | MS.gene035915:CDS | 45.0% |
!! | GTATGCATTGGTCTTCAGCT+TGG | - | chr5.2:52627031-52627050 | MS.gene035915:intron | 45.0% |
ACCAGCCTGGTCTGTGTATA+CGG | + | chr5.2:52626758-52626777 | None:intergenic | 50.0% | |
ATGTGTTTGCGCAGATTCGG+AGG | - | chr5.2:52627827-52627846 | MS.gene035915:CDS | 50.0% | |
CTCAAGTAGCGCAAATGCTC+TGG | + | chr5.2:52625768-52625787 | None:intergenic | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | + | chr5.2:52627255-52627274 | None:intergenic | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | - | chr5.2:52627972-52627991 | MS.gene035915:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | - | chr5.2:52626986-52627005 | MS.gene035915:intron | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | - | chr5.2:52627865-52627884 | MS.gene035915:intron | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr5.2:52627987-52628006 | None:intergenic | 50.0% |
!! | ATTGGTCTTCAGCTTGGGTG+AGG | - | chr5.2:52627037-52627056 | MS.gene035915:intron | 50.0% |
!! | GAAGTGATGGGTGAAGGAGT+TGG | - | chr5.2:52625870-52625889 | MS.gene035915:CDS | 50.0% |
ACCGTATACACAGACCAGGC+TGG | - | chr5.2:52626754-52626773 | MS.gene035915:intron | 55.0% | |
ACTTCAACAACGCACCAGCC+TGG | + | chr5.2:52626771-52626790 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | - | chr5.2:52627864-52627883 | MS.gene035915:intron | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | + | chr5.2:52627256-52627275 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | - | chr5.2:52627878-52627897 | MS.gene035915:intron | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr5.2:52625951-52625970 | MS.gene035915:CDS | 55.0% |
!! | GTGATGGGTGAAGGAGTTGG+AGG | - | chr5.2:52625873-52625892 | MS.gene035915:CDS | 55.0% |
GGGTGAAGGAGTTGGAGGCA+CGG | - | chr5.2:52625878-52625897 | MS.gene035915:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 52625295 | 52628052 | 52625295 | ID=MS.gene035915 |
chr5.2 | mRNA | 52625295 | 52628052 | 52625295 | ID=MS.gene035915.t1;Parent=MS.gene035915 |
chr5.2 | exon | 52627936 | 52628052 | 52627936 | ID=MS.gene035915.t1.exon1;Parent=MS.gene035915.t1 |
chr5.2 | CDS | 52627936 | 52628052 | 52627936 | ID=cds.MS.gene035915.t1;Parent=MS.gene035915.t1 |
chr5.2 | exon | 52627171 | 52627864 | 52627171 | ID=MS.gene035915.t1.exon2;Parent=MS.gene035915.t1 |
chr5.2 | CDS | 52627171 | 52627864 | 52627171 | ID=cds.MS.gene035915.t1;Parent=MS.gene035915.t1 |
chr5.2 | exon | 52625295 | 52626727 | 52625295 | ID=MS.gene035915.t1.exon3;Parent=MS.gene035915.t1 |
chr5.2 | CDS | 52625295 | 52626727 | 52625295 | ID=cds.MS.gene035915.t1;Parent=MS.gene035915.t1 |
Gene Sequence |
Protein sequence |