AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035969

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035969.t1 MTR_5g061890 64.267 375 116 7 1 365 1 367 1.61e-157 457
MS.gene035969.t1 MTR_5g060780 63.708 383 120 8 1 373 1 374 5.32e-157 456
MS.gene035969.t1 MTR_5g460920 63.708 383 120 8 1 373 1 374 2.39e-156 454
MS.gene035969.t1 MTR_5g061220 47.588 456 170 12 1 404 8 446 4.34e-122 371
MS.gene035969.t1 MTR_5g060630 51.079 417 146 9 1 361 1 415 7.61e-119 362
MS.gene035969.t1 MTR_5g460740 51.079 417 146 9 1 361 1 415 7.61e-119 362
MS.gene035969.t1 MTR_1g058210 50.543 368 165 8 1 357 1 362 1.79e-110 338
MS.gene035969.t1 MTR_2g024430 47.507 381 173 11 1 367 9 376 6.21e-99 310
MS.gene035969.t1 MTR_5g040880 50.893 336 141 10 9 332 8 331 3.46e-96 304
MS.gene035969.t1 MTR_2g006270 45.013 371 179 11 1 357 1 360 3.57e-86 275
MS.gene035969.t1 MTR_2g006380 42.817 355 176 8 9 349 17 358 5.21e-83 267
MS.gene035969.t1 MTR_5g040740 48.773 326 138 11 4 313 3 315 1.54e-80 259
MS.gene035969.t1 MTR_5g082140 41.530 366 184 11 9 357 9 361 7.13e-80 259
MS.gene035969.t1 MTR_5g060770 48.562 313 102 7 61 370 7 263 3.35e-70 230
MS.gene035969.t1 MTR_3g073420 34.578 509 242 21 9 448 16 502 5.09e-57 202
MS.gene035969.t1 MTR_5g460910 42.901 324 103 8 51 370 13 258 1.42e-56 194
MS.gene035969.t1 MTR_1g064430 33.735 415 199 14 9 360 24 425 4.16e-55 198
MS.gene035969.t1 MTR_1g064430 33.407 455 210 17 9 386 37 475 4.93e-55 198
MS.gene035969.t1 MTR_2g094570 34.351 393 176 15 9 338 8 381 9.69e-52 189
MS.gene035969.t1 MTR_2g094570 34.351 393 176 15 9 338 8 381 1.34e-51 188
MS.gene035969.t1 MTR_2g094570 34.351 393 176 15 9 338 64 437 2.25e-51 189
MS.gene035969.t1 MTR_5g062970 46.860 207 93 7 12 206 38 239 2.46e-50 174
MS.gene035969.t1 MTR_4g058930 33.938 386 183 13 9 333 9 383 2.56e-48 179
MS.gene035969.t1 MTR_4g058930 33.938 386 183 13 9 333 9 383 2.79e-48 179
MS.gene035969.t1 MTR_1g094960 31.450 407 212 14 9 363 16 407 1.32e-47 176
MS.gene035969.t1 MTR_7g101280 31.026 390 194 12 9 333 28 407 4.53e-46 172
MS.gene035969.t1 MTR_0041s0110 31.026 390 194 12 9 333 28 407 4.53e-46 172
MS.gene035969.t1 MTR_2g005240 31.051 409 220 17 12 393 23 396 3.88e-37 147
MS.gene035969.t1 MTR_8g100050 30.814 344 204 12 12 332 59 391 4.31e-36 144
MS.gene035969.t1 MTR_8g100050 30.814 344 204 12 12 332 59 391 4.31e-36 144
MS.gene035969.t1 MTR_2g018690 31.250 368 193 16 9 336 20 367 7.14e-36 144
MS.gene035969.t1 MTR_7g101275 32.063 315 185 11 22 317 2 306 8.89e-36 139
MS.gene035969.t1 MTR_5g062960 43.716 183 86 5 227 406 1 169 2.25e-34 129
MS.gene035969.t1 MTR_2g093740 31.283 374 209 15 12 351 56 415 2.78e-34 139
MS.gene035969.t1 MTR_2g093740 31.283 374 209 15 12 351 56 415 3.22e-34 138
MS.gene035969.t1 MTR_2g093740 31.283 374 209 15 12 351 56 415 3.58e-34 139
MS.gene035969.t1 MTR_2g043250 29.345 351 212 10 6 332 17 355 3.92e-34 139
MS.gene035969.t1 MTR_4g088210 30.319 376 220 14 12 358 38 400 1.58e-33 136
MS.gene035969.t1 MTR_8g079492 30.055 366 199 15 9 336 20 366 1.82e-33 137
MS.gene035969.t1 MTR_8g079492 30.055 366 199 15 9 336 20 366 1.90e-33 136
MS.gene035969.t1 MTR_4g088210 30.319 376 220 14 12 358 38 400 2.24e-33 135
MS.gene035969.t1 MTR_2g014770 28.689 366 219 13 7 341 42 396 4.31e-33 134
MS.gene035969.t1 MTR_2g014770 28.689 366 219 13 7 341 42 396 4.86e-33 134
MS.gene035969.t1 MTR_4g124900 29.023 348 217 11 6 332 17 355 6.40e-33 135
MS.gene035969.t1 MTR_4g124900 29.023 348 217 11 6 332 17 355 7.03e-33 135
MS.gene035969.t1 MTR_5g076270 28.954 373 195 15 9 336 21 368 9.02e-33 134
MS.gene035969.t1 MTR_4g021580 28.032 371 230 13 10 359 17 371 5.51e-32 131
MS.gene035969.t1 MTR_4g021580 28.032 371 230 13 10 359 17 371 6.27e-32 131
MS.gene035969.t1 MTR_2g093740 30.233 387 209 15 12 351 56 428 7.88e-32 131
MS.gene035969.t1 MTR_2g093740 30.233 387 209 15 12 351 56 428 8.29e-32 131
MS.gene035969.t1 MTR_2g093740 30.233 387 209 15 12 351 56 428 9.77e-32 131
MS.gene035969.t1 MTR_1g024025 29.781 366 214 13 6 340 37 390 1.03e-31 131
MS.gene035969.t1 MTR_3g064050 28.150 373 198 15 9 336 23 370 1.05e-31 131
MS.gene035969.t1 MTR_0041s0120 31.288 326 185 12 22 317 2 318 1.53e-30 124
MS.gene035969.t1 MTR_7g062540 27.704 379 216 15 9 352 11 366 1.53e-30 127
MS.gene035969.t1 MTR_8g027440 29.315 365 213 15 9 347 26 371 2.26e-29 123
MS.gene035969.t1 MTR_4g060460 28.382 377 222 13 12 359 54 411 1.61e-26 115
MS.gene035969.t1 MTR_4g060460 28.382 377 222 13 12 359 54 411 1.67e-26 115
MS.gene035969.t1 MTR_8g101360 28.977 352 208 13 9 332 28 365 4.30e-26 114
MS.gene035969.t1 MTR_8g079492 29.492 295 157 13 76 336 7 284 6.03e-22 100
MS.gene035969.t1 MTR_2g093740 31.047 277 155 12 102 351 18 285 5.13e-20 94.4
MS.gene035969.t1 MTR_2g093740 31.047 277 155 12 102 351 18 285 6.54e-20 94.4
MS.gene035969.t1 MTR_8g446900 27.931 290 174 12 63 332 14 288 9.96e-19 89.0
MS.gene035969.t1 MTR_2g093740 29.655 290 155 12 102 351 18 298 1.22e-17 87.0
MS.gene035969.t1 MTR_2g093740 29.655 290 155 12 102 351 18 298 1.25e-17 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035969.t1 AT1G77850 33.933 445 223 16 5 389 13 446 2.83e-64 221
MS.gene035969.t1 AT1G77850 33.933 445 223 16 5 389 13 446 3.18e-64 221
MS.gene035969.t1 AT4G30080 34.037 379 186 11 9 333 16 384 8.00e-50 183
MS.gene035969.t1 AT2G28350 32.468 385 191 12 9 333 7 382 2.11e-45 171
MS.gene035969.t1 AT2G28350 32.468 385 191 12 9 333 7 382 2.16e-45 171
MS.gene035969.t1 AT2G46530 32.000 375 203 17 12 359 21 370 7.67e-42 160
MS.gene035969.t1 AT3G61830 32.481 391 211 18 12 375 25 389 1.12e-41 159
MS.gene035969.t1 AT2G46530 32.011 378 205 17 9 359 39 391 1.46e-41 159
MS.gene035969.t1 AT2G33860 32.258 372 206 15 12 354 54 408 6.46e-39 151
MS.gene035969.t1 AT1G59750 30.347 346 202 11 12 332 22 353 3.04e-36 144
MS.gene035969.t1 AT1G59750 30.347 346 202 11 12 332 22 353 3.29e-36 144
MS.gene035969.t1 AT5G37020 29.491 373 193 16 9 336 19 366 3.41e-36 144
MS.gene035969.t1 AT1G59750 30.347 346 202 11 12 332 22 353 3.53e-36 144
MS.gene035969.t1 AT1G59750 30.347 346 202 11 12 332 22 353 3.53e-36 144
MS.gene035969.t1 AT5G37020 29.491 373 193 16 9 336 19 366 3.96e-36 144
MS.gene035969.t1 AT1G34310 31.503 346 192 13 12 332 27 352 9.11e-34 136
MS.gene035969.t1 AT1G34390 30.409 342 199 11 12 332 27 350 9.74e-34 136
MS.gene035969.t1 AT1G30330 29.268 369 199 14 9 336 22 369 2.62e-33 136
MS.gene035969.t1 AT1G30330 29.268 369 199 14 9 336 22 369 2.62e-33 136
MS.gene035969.t1 AT1G30330 29.268 369 199 14 9 336 20 367 2.64e-33 136
MS.gene035969.t1 AT1G35540 30.670 388 217 16 12 371 27 390 2.95e-33 135
MS.gene035969.t1 AT4G23980 27.568 370 231 11 12 361 12 364 7.28e-33 134
MS.gene035969.t1 AT4G23980 27.568 370 231 11 12 361 12 364 7.93e-33 134
MS.gene035969.t1 AT1G35520 30.636 346 195 13 12 332 27 352 1.13e-32 133
MS.gene035969.t1 AT1G19220 29.480 346 214 11 8 332 19 355 2.36e-32 133
MS.gene035969.t1 AT5G20730 29.885 348 214 11 6 332 18 356 4.43e-32 132
MS.gene035969.t1 AT5G62000 28.933 356 207 13 9 332 52 393 8.77e-32 131
MS.gene035969.t1 AT5G62000 28.933 356 207 13 9 332 52 393 8.77e-32 131
MS.gene035969.t1 AT5G62000 28.933 356 207 13 9 332 52 393 8.77e-32 131
MS.gene035969.t1 AT5G62000 28.933 356 207 13 9 332 52 393 8.77e-32 131
MS.gene035969.t1 AT1G35240 30.925 346 194 14 12 332 27 352 9.70e-32 130
MS.gene035969.t1 AT5G20730 30.086 349 213 12 6 332 18 357 1.07e-31 131
MS.gene035969.t1 AT5G20730 30.086 349 213 12 6 332 18 357 1.09e-31 131
MS.gene035969.t1 AT5G62000 28.933 356 207 13 9 332 52 393 1.11e-31 131
MS.gene035969.t1 AT1G34410 30.058 346 197 13 12 332 27 352 1.28e-31 130
MS.gene035969.t1 AT1G19850 29.155 367 216 13 5 339 36 390 2.63e-30 127
MS.gene035969.t1 AT1G19850 29.155 367 216 13 5 339 47 401 3.05e-30 127
MS.gene035969.t1 AT5G60450 29.752 363 227 12 12 351 65 422 1.41e-29 124
MS.gene035969.t1 AT5G60450 29.752 363 227 12 12 351 41 398 1.63e-29 124
MS.gene035969.t1 AT3G61830 32.059 340 183 16 59 375 24 338 1.67e-29 123
MS.gene035969.t1 AT1G34170 27.317 410 239 15 12 385 25 411 7.46e-29 120
MS.gene035969.t1 AT1G43950 31.731 208 115 7 12 204 27 222 2.36e-23 99.4
MS.gene035969.t1 AT2G46530 31.579 266 144 13 114 359 36 283 1.68e-22 101
MS.gene035969.t1 AT1G34170 25.610 410 220 15 12 385 25 385 2.98e-22 100
MS.gene035969.t1 AT1G34170 25.610 410 220 15 12 385 25 385 5.92e-22 100
MS.gene035969.t1 AT2G33860 30.534 262 148 11 115 354 2 251 3.03e-21 97.4
MS.gene035969.t1 AT5G37020 30.078 256 130 12 115 336 31 271 5.97e-20 94.7

Find 168 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTTTATCATAGGTTAAA+TGG 0.116737 5.3:+47811989 MS.gene035969:intron
GGCGCATTTCTGCCATATTT+TGG 0.143600 5.3:-47810574 None:intergenic
TTCCATCTTCGTCGTCTTCT+TGG 0.198710 5.3:-47810848 None:intergenic
TAAACTTTAGAGTGAATCTT+TGG 0.260426 5.3:-47810615 None:intergenic
GCATGTTCCAAATGACCTTT+TGG 0.261628 5.3:-47810645 None:intergenic
ATTCTTCTAATGTCCCTAAT+TGG 0.268826 5.3:+47811441 MS.gene035969:CDS
GGTGGTTTCTGCGGGATATT+AGG 0.279342 5.3:-47812018 None:intergenic
AAGTTGATTGTGGCAGCATT+AGG 0.285643 5.3:-47810678 None:intergenic
CCCTAATTGGCGTATGCTTA+TGG 0.287074 5.3:+47811454 MS.gene035969:CDS
ACCATAAGCATACGCCAATT+AGG 0.293018 5.3:-47811455 None:intergenic
ATCGTTAAATTTGAAGATTC+GGG 0.302215 5.3:-47811383 None:intergenic
CTACTTCCCAAAAGGTCATT+TGG 0.306082 5.3:+47810638 MS.gene035969:CDS
CTTTCTCCAGCTTCGGCTGC+AGG 0.313524 5.3:-47811170 None:intergenic
GCCACAATCAACTTTCTTGA+TGG 0.314616 5.3:+47810687 MS.gene035969:CDS
CTGCACTCTCAGTTAATTTC+CGG 0.320992 5.3:-47811196 None:intergenic
CCTGGCCCCGTTGTAGTTCC+TGG 0.321890 5.3:+47810825 MS.gene035969:CDS
TCACTTGGTGCTTGGATCAT+TGG 0.323076 5.3:-47812817 None:intergenic
CTCCTCTGGACCCCAAAATA+TGG 0.325388 5.3:+47810562 MS.gene035969:CDS
TATCGTTAAATTTGAAGATT+CGG 0.326239 5.3:-47811384 None:intergenic
ATGAAGATTGGTTGGAAATC+TGG 0.337904 5.3:+47811332 MS.gene035969:CDS
GACTTCTCCAACTCAAGCTT+TGG 0.338739 5.3:-47810960 None:intergenic
CAGTTCTAAAGGTGCGGACT+TGG 0.342634 5.3:+47812437 MS.gene035969:CDS
CAGTTCTAAAGGTGCGGACT+TGG 0.342634 5.3:+47812506 MS.gene035969:CDS
CAGTTCTAAAGGTGCGGACT+TGG 0.342634 5.3:+47812575 MS.gene035969:CDS
CAGTTCTAAAGGTGCGGACT+TGG 0.342634 5.3:+47812713 MS.gene035969:CDS
AGTTGATTGTGGCAGCATTA+GGG 0.346873 5.3:-47810677 None:intergenic
CTCTTTATCATAGGTTAAAT+GGG 0.347475 5.3:+47811990 MS.gene035969:intron
CCAAGCTTTAGCCTTGTATC+AGG 0.353230 5.3:-47812345 None:intergenic
GTCTCTGTCACTGACCTTCC+AGG 0.363192 5.3:+47810990 MS.gene035969:CDS
AGTGGTACTTTGCTTGATAC+AGG 0.364586 5.3:+47812264 MS.gene035969:CDS
CAGTTCTAAACGAGTGGACT+TGG 0.366271 5.3:+47812644 MS.gene035969:CDS
GAAGAACTCTGAGAAAGTTT+AGG 0.368472 5.3:-47812117 None:intergenic
AGTCTTGGGTGCAGTGGATT+TGG 0.374989 5.3:+47811217 MS.gene035969:CDS
TTTATCCCACAGCTGGGAAT+TGG 0.381505 5.3:+47811270 MS.gene035969:CDS
AGATTTCCAACCAATCTTCA+TGG 0.383662 5.3:-47811330 None:intergenic
AGTGATACTTTGGCTGATAC+AGG 0.384060 5.3:+47812609 MS.gene035969:CDS
AGTGATACTTTGGCTGATAC+AGG 0.384060 5.3:+47812678 MS.gene035969:CDS
AGTGATACTTTGGCTGATAC+AGG 0.384060 5.3:+47812747 MS.gene035969:CDS
AGTGATACTTTGGCTGATAC+AGG 0.386079 5.3:+47812540 MS.gene035969:CDS
TACGGGATTGAGGACTAGTT+TGG 0.392285 5.3:-47810784 None:intergenic
TCTTGGCCAGGAACTACAAC+GGG 0.396408 5.3:-47810831 None:intergenic
CCATAAGCATACGCCAATTA+GGG 0.399775 5.3:-47811454 None:intergenic
CCGGCCTCTTTCTCCAGCTT+CGG 0.402720 5.3:-47811177 None:intergenic
AACTTCCCTGCAGCCGAAGC+TGG 0.412961 5.3:+47811164 MS.gene035969:CDS
TCTTCCTCACCGACCTCCTC+TGG 0.413308 5.3:+47810548 MS.gene035969:CDS
TGACCAGGGGTGGTTTCTGC+GGG 0.425488 5.3:-47812026 None:intergenic
CTACAGCTTGGCAGTTCTAA+AGG 0.441054 5.3:+47812771 MS.gene035969:CDS
CGCAGAGTCAAGTGATACTT+TGG 0.442708 5.3:+47812530 MS.gene035969:CDS
GTGCTGAGTTGTTGCCTCAT+AGG 0.445159 5.3:+47812793 MS.gene035969:CDS
TCTTCGTCGTCTTCTTGGCC+AGG 0.446209 5.3:-47810843 None:intergenic
CTAAAGCTTGGCAGTTCTAA+AGG 0.450303 5.3:+47812426 MS.gene035969:CDS
ATTAACTGAGAGTGCAGTCT+TGG 0.450596 5.3:+47811202 MS.gene035969:CDS
GGTAATGGTGTCAGTGTACT+TGG 0.452357 5.3:-47812168 None:intergenic
ATCTTTGGAATCTTGACGTC+GGG 0.453371 5.3:-47810600 None:intergenic
CGCAGAGTCGAGTGATACTT+TGG 0.455775 5.3:+47812599 MS.gene035969:CDS
CGCAGAGTCGAGTGATACTT+TGG 0.455775 5.3:+47812668 MS.gene035969:CDS
CGCAGAGTCGAGTGATACTT+TGG 0.455775 5.3:+47812737 MS.gene035969:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.457123 5.3:+47812495 MS.gene035969:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.457123 5.3:+47812564 MS.gene035969:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.457123 5.3:+47812702 MS.gene035969:CDS
ATAAACTGTGGAGGCGGTAA+TGG 0.459035 5.3:-47812183 None:intergenic
TGGAATCTTGACGTCGGGAC+CGG 0.461574 5.3:-47810595 None:intergenic
TTCTTGAGCATCAGTTGATA+CGG 0.462542 5.3:-47810802 None:intergenic
AGTGATACTTTGTCTCATAC+AGG 0.464283 5.3:+47812471 MS.gene035969:CDS
GTATAAGTGTGCACTTTGCC+TGG 0.470896 5.3:-47811008 None:intergenic
AAAGTTTACTACTTCCCAAA+AGG 0.471184 5.3:+47810630 MS.gene035969:CDS
CATCTGGCATGCAGGGAGTC+GGG 0.473856 5.3:+47812211 MS.gene035969:CDS
CCATCTGGCATGCAGGGAGT+CGG 0.475363 5.3:+47812210 MS.gene035969:CDS
AAGATACCTCACTTGGTGCT+TGG 0.484055 5.3:-47812825 None:intergenic
ATGAATACAACAGAATCGTC+GGG 0.491017 5.3:-47811095 None:intergenic
CCAGGAACTACAACGGGGCC+AGG 0.493321 5.3:-47810825 None:intergenic
GTTCTTTCCAAAGCTTGAGT+TGG 0.496163 5.3:+47810953 MS.gene035969:CDS
GTAGATGATGCCATGAAGAT+TGG 0.497274 5.3:+47811320 MS.gene035969:CDS
CATGGCATCATCTACAACCT+TGG 0.499201 5.3:-47811312 None:intergenic
AGTTCTAAAGGTGCGGACTT+GGG 0.500873 5.3:+47812438 MS.gene035969:CDS
AGTTCTAAAGGTGCGGACTT+GGG 0.500873 5.3:+47812507 MS.gene035969:CDS
AGTTCTAAAGGTGCGGACTT+GGG 0.500873 5.3:+47812576 MS.gene035969:CDS
AGTTCTAAAGGTGCGGACTT+GGG 0.500873 5.3:+47812714 MS.gene035969:CDS
TTGACCAGGGGTGGTTTCTG+CGG 0.502646 5.3:-47812027 None:intergenic
AACCACCCCTGGTCAATCCA+TGG 0.506086 5.3:+47812034 MS.gene035969:CDS
GCAGCCGAAGCTGGAGAAAG+AGG 0.507224 5.3:+47811173 MS.gene035969:CDS
CTTGATACAGGGCTAAAGCT+TGG 0.508063 5.3:+47812276 MS.gene035969:CDS
GGCCAAGAAGACGACGAAGA+TGG 0.514405 5.3:+47810846 MS.gene035969:CDS
TCAACTGATGCTCAAGAACC+TGG 0.516649 5.3:+47810807 MS.gene035969:CDS
TTAACTGAGAGTGCAGTCTT+GGG 0.518275 5.3:+47811203 MS.gene035969:CDS
GAAGGTGCTGACTTGTTCGC+AGG 0.520378 5.3:+47812237 MS.gene035969:CDS
AAGTGTGCACTTTGCCTGGA+AGG 0.520578 5.3:-47811004 None:intergenic
CAACCTCCCATGGATTGACC+AGG 0.523330 5.3:-47812041 None:intergenic
GGAGATGTTGACAGTGGAGG+AGG 0.528074 5.3:-47812082 None:intergenic
CCGAAGCTGGAGAAAGAGGC+CGG 0.528434 5.3:+47811177 MS.gene035969:CDS
GCTGATACAGGGCTACAGCT+TGG 0.528709 5.3:+47812759 MS.gene035969:CDS
TGCTAAAACGATGCATGGAA+AGG 0.529583 5.3:-47810721 None:intergenic
ACAGTGGAGGAGGAAGTTGA+AGG 0.529729 5.3:-47812072 None:intergenic
TCTTGAGCATCAGTTGATAC+GGG 0.530747 5.3:-47810801 None:intergenic
AATTCCGACATATATTTCTC+CGG 0.531500 5.3:-47811129 None:intergenic
GCTGATACAGGGCTAAAGCT+TGG 0.532624 5.3:+47812552 MS.gene035969:CDS
GCTGATACAGGGCTAAAGCT+TGG 0.532624 5.3:+47812621 MS.gene035969:CDS
GCTGATACAGGGCTAAAGCT+TGG 0.532624 5.3:+47812690 MS.gene035969:CDS
TCTCATACAGGGCTAAAGCT+TGG 0.535473 5.3:+47812483 MS.gene035969:CDS
AAAACGATGCATGGAAAGGA+TGG 0.536509 5.3:-47810717 None:intergenic
TTTCTCCAGCTTCGGCTGCA+GGG 0.540628 5.3:-47811169 None:intergenic
GAGTGCAGTCTTGGGTGCAG+TGG 0.542473 5.3:+47811211 MS.gene035969:CDS
CCTGATACAAGGCTAAAGCT+TGG 0.543990 5.3:+47812345 MS.gene035969:CDS
CTTGGATCATTGGACCTATG+AGG 0.545861 5.3:-47812807 None:intergenic
AAATATATGTCGGAATTCGC+AGG 0.547367 5.3:+47811135 MS.gene035969:CDS
TTGGTTGGAAATCTGGAATG+AGG 0.547760 5.3:+47811339 MS.gene035969:CDS
CAGTGGAGGAGGAAGTTGAA+GGG 0.549086 5.3:-47812071 None:intergenic
CATCAGTTGATACGGGATTG+AGG 0.549390 5.3:-47810794 None:intergenic
TCAACTGCTAAAACGATGCA+TGG 0.549430 5.3:-47810726 None:intergenic
AAACAGAGTAGACTAACTAA+AGG 0.549469 5.3:+47811038 MS.gene035969:CDS
ATGCAGGGAGTCGGGCAAGA+AGG 0.554117 5.3:+47812219 MS.gene035969:CDS
TCCCATGGATTGACCAGGGG+TGG 0.554649 5.3:-47812036 None:intergenic
GATGAATACAACAGAATCGT+CGG 0.555081 5.3:-47811096 None:intergenic
ATGATGCCATGAAGATTGGT+TGG 0.558711 5.3:+47811324 MS.gene035969:CDS
AGAGTAGACTAACTAAAGGC+TGG 0.559743 5.3:+47811042 MS.gene035969:CDS
TCTGATACAAGGCTAAAGCT+TGG 0.562387 5.3:+47812414 MS.gene035969:CDS
GTGGTACTTTGCCTGATACA+AGG 0.562508 5.3:+47812334 MS.gene035969:CDS
TAGTCTACTCTGTTTCGTGT+AGG 0.569931 5.3:-47811030 None:intergenic
GACTTGTTCGCAGGGTCGAG+TGG 0.575371 5.3:+47812246 MS.gene035969:CDS
AACAAGTCGGCGCATTCACG+AGG 0.576079 5.3:-47810933 None:intergenic
GGGTAAACTTCAACCTCCCA+TGG 0.577222 5.3:-47812051 None:intergenic
TGTTGTGGAGATGTTGACAG+TGG 0.578376 5.3:-47812088 None:intergenic
GTTGATTGTGGCAGCATTAG+GGG 0.584200 5.3:-47810676 None:intergenic
CCGACTCCCTGCATGCCAGA+TGG 0.584840 5.3:-47812210 None:intergenic
TGGTTGGAAATCTGGAATGA+GGG 0.589287 5.3:+47811340 MS.gene035969:CDS
GTGGTACTTTGCTTGATACA+GGG 0.591580 5.3:+47812265 MS.gene035969:CDS
GCAAAGACCTCGTCGGTGAG+AGG 0.591642 5.3:-47810762 None:intergenic
ATTACACCAATTCCCAGCTG+TGG 0.592913 5.3:-47811276 None:intergenic
AAAATATGGCAGAAATGCGC+CGG 0.594883 5.3:+47810576 MS.gene035969:CDS
GTGATACTTTGGCTGATACA+GGG 0.598282 5.3:+47812610 MS.gene035969:CDS
GTGATACTTTGGCTGATACA+GGG 0.598282 5.3:+47812679 MS.gene035969:CDS
GTGATACTTTGGCTGATACA+GGG 0.598282 5.3:+47812748 MS.gene035969:CDS
TATTGTGAGAGTCTTGACAT+AGG 0.600208 5.3:-47810883 None:intergenic
AGTTCTAAACGAGTGGACTT+GGG 0.604889 5.3:+47812645 MS.gene035969:CDS
GCCAATGAAGATACCTCACT+TGG 0.608165 5.3:-47812832 None:intergenic
TTACACCAATTCCCAGCTGT+GGG 0.610036 5.3:-47811275 None:intergenic
GTGATACTTTGGCTGATACA+GGG 0.610821 5.3:+47812541 MS.gene035969:CDS
TTCTTGGCCAGGAACTACAA+CGG 0.613299 5.3:-47810832 None:intergenic
ACCACCCCTGGTCAATCCAT+GGG 0.614274 5.3:+47812035 MS.gene035969:CDS
CGATGCATGGAAAGGATGGA+CGG 0.616795 5.3:-47810713 None:intergenic
GTGGTACTTTGTCTGATACA+AGG 0.625280 5.3:+47812403 MS.gene035969:CDS
TGTGGAGATGTTGACAGTGG+AGG 0.625945 5.3:-47812085 None:intergenic
GCTTGGCAGTTCTAAACGAG+TGG 0.631577 5.3:+47812638 MS.gene035969:CDS
AACCTCCCATGGATTGACCA+GGG 0.633534 5.3:-47812040 None:intergenic
TCTTCCGGAGAAATATATGT+CGG 0.638223 5.3:+47811125 MS.gene035969:CDS
ACCATCAAGAAAGTTGATTG+TGG 0.638655 5.3:-47810688 None:intergenic
GGGTCCAGAGGAGGTCGGTG+AGG 0.640715 5.3:-47810552 None:intergenic
AATCTTTGGAATCTTGACGT+CGG 0.641188 5.3:-47810601 None:intergenic
AAGGTGCTGACTTGTTCGCA+GGG 0.642119 5.3:+47812238 MS.gene035969:CDS
AGGTCGGTGAGGAAGAGACA+TGG 0.649164 5.3:-47810541 None:intergenic
GACTTGTTCGCAGAGTCGAG+TGG 0.649322 5.3:+47812315 MS.gene035969:CDS
GACTTGTTCGCAGAGTCGAG+TGG 0.649322 5.3:+47812384 MS.gene035969:CDS
GTGATACTTTGTCTCATACA+GGG 0.652930 5.3:+47812472 MS.gene035969:CDS
ACCTCCCATGGATTGACCAG+GGG 0.653907 5.3:-47812039 None:intergenic
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5.3:+47812431 MS.gene035969:CDS
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5.3:+47812500 MS.gene035969:CDS
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5.3:+47812569 MS.gene035969:CDS
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5.3:+47812707 MS.gene035969:CDS
AATGATCCAAGCACCAAGTG+AGG 0.655123 5.3:+47812819 MS.gene035969:CDS
TATCCCGCAGAAACCACCCC+TGG 0.657644 5.3:+47812023 MS.gene035969:CDS
ACCCCTGGTCAATCCATGGG+AGG 0.661573 5.3:+47812038 MS.gene035969:CDS
GGTTGAACCTCTCACCGACG+AGG 0.680217 5.3:+47810755 MS.gene035969:CDS
AAGCTTTGGAAAGAACAAGT+CGG 0.684936 5.3:-47810946 None:intergenic
GGATTTGGCTAACACGAACG+TGG 0.693257 5.3:+47811232 MS.gene035969:CDS
TAGTTTGGCAAAGACCTCGT+CGG 0.693646 5.3:-47810769 None:intergenic
ATACAACAGAATCGTCGGGG+AGG 0.705610 5.3:-47811091 None:intergenic
TGAATACAACAGAATCGTCG+GGG 0.734029 5.3:-47811094 None:intergenic
CTTGGCCAGGAACTACAACG+GGG 0.776236 5.3:-47810830 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGATAAAGAGATAAAAAA+TGG - chr5.3:47811982-47812001 None:intergenic 15.0%
!!! ATAAAATTTTAAGACTTAGT+AGG + chr5.3:47811603-47811622 MS.gene035969:intron 15.0%
!!! ATTTTTTATCTCTTTATCAT+AGG + chr5.3:47811981-47812000 MS.gene035969:intron 15.0%
!!! TAAATCAATCTTGTTTATTA+TGG - chr5.3:47811542-47811561 None:intergenic 15.0%
!!! TTAAAGAATTTTGAATTTGT+CGG - chr5.3:47812146-47812165 None:intergenic 15.0%
!! TATCGTTAAATTTGAAGATT+CGG - chr5.3:47811387-47811406 None:intergenic 20.0%
!!! TAAAGAATTTTGAATTTGTC+GGG - chr5.3:47812145-47812164 None:intergenic 20.0%
! ACATTTGACACTTATCATAT+AGG - chr5.3:47811663-47811682 None:intergenic 25.0%
! ACGTAATCTACTTACATTAA+CGG - chr5.3:47811768-47811787 None:intergenic 25.0%
! ATCGTTAAATTTGAAGATTC+GGG - chr5.3:47811386-47811405 None:intergenic 25.0%
! CATTTGACACTTATCATATA+GGG - chr5.3:47811662-47811681 None:intergenic 25.0%
! CTCTTTATCATAGGTTAAAT+GGG + chr5.3:47811990-47812009 MS.gene035969:intron 25.0%
! TACAATAAGAAATGCTTAGA+AGG - chr5.3:47811842-47811861 None:intergenic 25.0%
! TCTCTTTATCATAGGTTAAA+TGG + chr5.3:47811989-47812008 MS.gene035969:intron 25.0%
!! AAAGAATTTTGAATTTGTCG+GGG - chr5.3:47812144-47812163 None:intergenic 25.0%
!!! GCTTTCTTATTTTGTTCTAA+TGG + chr5.3:47811484-47811503 MS.gene035969:intron 25.0%
!!! TAAACTTTAGAGTGAATCTT+TGG - chr5.3:47810618-47810637 None:intergenic 25.0%
AAACAGAGTAGACTAACTAA+AGG + chr5.3:47811038-47811057 MS.gene035969:CDS 30.0%
AAAGTTTACTACTTCCCAAA+AGG + chr5.3:47810630-47810649 MS.gene035969:CDS 30.0%
AATTCCGACATATATTTCTC+CGG - chr5.3:47811132-47811151 None:intergenic 30.0%
AGCTAGAATTAGATGATTCT+TGG + chr5.3:47811570-47811589 MS.gene035969:intron 30.0%
ATTCTTCTAATGTCCCTAAT+TGG + chr5.3:47811441-47811460 MS.gene035969:CDS 30.0%
GGAAATAATAATGTAGCAGA+TGG - chr5.3:47811725-47811744 None:intergenic 30.0%
GTATTCATCAAAAACTCTTC+CGG + chr5.3:47811110-47811129 MS.gene035969:CDS 30.0%
! TAACGATAAGATGTTTTCAG+CGG + chr5.3:47811399-47811418 MS.gene035969:CDS 30.0%
!! AAGTTTAGGACTTTTTGTTG+TGG - chr5.3:47812106-47812125 None:intergenic 30.0%
AAATATATGTCGGAATTCGC+AGG + chr5.3:47811135-47811154 MS.gene035969:CDS 35.0%
AAGCAAGCCTACATTCAAAA+CGG - chr5.3:47811635-47811654 None:intergenic 35.0%
AGATTTCCAACCAATCTTCA+TGG - chr5.3:47811333-47811352 None:intergenic 35.0%
AGTGATACTTTGTCTCATAC+AGG + chr5.3:47812471-47812490 MS.gene035969:CDS 35.0%
ATGAATACAACAGAATCGTC+GGG - chr5.3:47811098-47811117 None:intergenic 35.0%
CCAGATGGAAAAATAAACTG+TGG - chr5.3:47812198-47812217 None:intergenic 35.0%
GATGAATACAACAGAATCGT+CGG - chr5.3:47811099-47811118 None:intergenic 35.0%
GATGGAAAAATAAACTGTGG+AGG - chr5.3:47812195-47812214 None:intergenic 35.0%
GCATGAGATATCAAGAACAA+GGG - chr5.3:47811746-47811765 None:intergenic 35.0%
GTGATACTTTGTCTCATACA+GGG + chr5.3:47812472-47812491 MS.gene035969:CDS 35.0%
TATTGTGAGAGTCTTGACAT+AGG - chr5.3:47810886-47810905 None:intergenic 35.0%
TCTTCCGGAGAAATATATGT+CGG + chr5.3:47811125-47811144 MS.gene035969:CDS 35.0%
! AACGATAAGATGTTTTCAGC+GGG + chr5.3:47811400-47811419 MS.gene035969:CDS 35.0%
! ACCATCAAGAAAGTTGATTG+TGG - chr5.3:47810691-47810710 None:intergenic 35.0%
! ATGAAGATTGGTTGGAAATC+TGG + chr5.3:47811332-47811351 MS.gene035969:CDS 35.0%
! CATGTTCCAAATGACCTTTT+GGG - chr5.3:47810647-47810666 None:intergenic 35.0%
! GAAGAACTCTGAGAAAGTTT+AGG - chr5.3:47812120-47812139 None:intergenic 35.0%
! GAATTGGTGTAATTTTGTGG+TGG + chr5.3:47811286-47811305 MS.gene035969:CDS 35.0%
! TGGGAATTGGTGTAATTTTG+TGG + chr5.3:47811283-47811302 MS.gene035969:CDS 35.0%
! TTCTTGAGCATCAGTTGATA+CGG - chr5.3:47810805-47810824 None:intergenic 35.0%
!! AAGCTTTGGAAAGAACAAGT+CGG - chr5.3:47810949-47810968 None:intergenic 35.0%
!! AATCTTTGGAATCTTGACGT+CGG - chr5.3:47810604-47810623 None:intergenic 35.0%
!! CCACAGTTTATTTTTCCATC+TGG + chr5.3:47812195-47812214 MS.gene035969:CDS 35.0%
AAAACGATGCATGGAAAGGA+TGG - chr5.3:47810720-47810739 None:intergenic 40.0%
AAAATATGGCAGAAATGCGC+CGG + chr5.3:47810576-47810595 MS.gene035969:CDS 40.0%
ACCATAAGCATACGCCAATT+AGG - chr5.3:47811458-47811477 None:intergenic 40.0%
AGAGTAGACTAACTAAAGGC+TGG + chr5.3:47811042-47811061 MS.gene035969:CDS 40.0%
AGTGATACTTTGGCTGATAC+AGG + chr5.3:47812540-47812559 MS.gene035969:CDS 40.0%
AGTGGTACTTTGCTTGATAC+AGG + chr5.3:47812264-47812283 MS.gene035969:CDS 40.0%
AGTTGATTGTGGCAGCATTA+GGG - chr5.3:47810680-47810699 None:intergenic 40.0%
ATGATGCCATGAAGATTGGT+TGG + chr5.3:47811324-47811343 MS.gene035969:CDS 40.0%
CCATAAGCATACGCCAATTA+GGG - chr5.3:47811457-47811476 None:intergenic 40.0%
CTACTTCCCAAAAGGTCATT+TGG + chr5.3:47810638-47810657 MS.gene035969:CDS 40.0%
CTGCACTCTCAGTTAATTTC+CGG - chr5.3:47811199-47811218 None:intergenic 40.0%
GCCACAATCAACTTTCTTGA+TGG + chr5.3:47810687-47810706 MS.gene035969:CDS 40.0%
GGAAAAATAAACTGTGGAGG+CGG - chr5.3:47812192-47812211 None:intergenic 40.0%
GGCATGAGATATCAAGAACA+AGG - chr5.3:47811747-47811766 None:intergenic 40.0%
GTAGATGATGCCATGAAGAT+TGG + chr5.3:47811320-47811339 MS.gene035969:CDS 40.0%
GTGATACTTTGGCTGATACA+GGG + chr5.3:47812541-47812560 MS.gene035969:CDS 40.0%
GTGGTACTTTGCTTGATACA+GGG + chr5.3:47812265-47812284 MS.gene035969:CDS 40.0%
GTGGTACTTTGTCTGATACA+AGG + chr5.3:47812403-47812422 MS.gene035969:CDS 40.0%
GTTCTTTCCAAAGCTTGAGT+TGG + chr5.3:47810953-47810972 MS.gene035969:CDS 40.0%
TAGTCTACTCTGTTTCGTGT+AGG - chr5.3:47811033-47811052 None:intergenic 40.0%
TCAACTGCTAAAACGATGCA+TGG - chr5.3:47810729-47810748 None:intergenic 40.0%
TCTGATACAAGGCTAAAGCT+TGG + chr5.3:47812414-47812433 MS.gene035969:CDS 40.0%
TGAATACAACAGAATCGTCG+GGG - chr5.3:47811097-47811116 None:intergenic 40.0%
TGCTAAAACGATGCATGGAA+AGG - chr5.3:47810724-47810743 None:intergenic 40.0%
! AAGTTGATTGTGGCAGCATT+AGG - chr5.3:47810681-47810700 None:intergenic 40.0%
! ATAAGATGTTTTCAGCGGGA+GGG + chr5.3:47811404-47811423 MS.gene035969:CDS 40.0%
! ATTAACTGAGAGTGCAGTCT+TGG + chr5.3:47811202-47811221 MS.gene035969:CDS 40.0%
! ATTTTTCCATCTGGCATGCA+GGG + chr5.3:47812204-47812223 MS.gene035969:CDS 40.0%
! CGCATTTCTGCCATATTTTG+GGG - chr5.3:47810575-47810594 None:intergenic 40.0%
! CTAAAGCTTGGCAGTTCTAA+AGG + chr5.3:47812288-47812307 MS.gene035969:CDS 40.0%
! GCATGTTCCAAATGACCTTT+TGG - chr5.3:47810648-47810667 None:intergenic 40.0%
! GCGCATTTCTGCCATATTTT+GGG - chr5.3:47810576-47810595 None:intergenic 40.0%
! TATTTTTCCATCTGGCATGC+AGG + chr5.3:47812203-47812222 MS.gene035969:CDS 40.0%
! TCTTGAGCATCAGTTGATAC+GGG - chr5.3:47810804-47810823 None:intergenic 40.0%
! TGGTTGGAAATCTGGAATGA+GGG + chr5.3:47811340-47811359 MS.gene035969:CDS 40.0%
! TTAACTGAGAGTGCAGTCTT+GGG + chr5.3:47811203-47811222 MS.gene035969:CDS 40.0%
! TTGGTTGGAAATCTGGAATG+AGG + chr5.3:47811339-47811358 MS.gene035969:CDS 40.0%
! TTGTGTTTTATCCCACAGCT+GGG + chr5.3:47811264-47811283 MS.gene035969:CDS 40.0%
!! AGTTCTAAACGAGTGGACTT+GGG + chr5.3:47812645-47812664 MS.gene035969:CDS 40.0%
!! ATCTTTGGAATCTTGACGTC+GGG - chr5.3:47810603-47810622 None:intergenic 40.0%
!! CGTTTTAGCAGTTGATCTCT+TGG + chr5.3:47810734-47810753 MS.gene035969:CDS 40.0%
!! GTTGCTACCGTTTTGAATGT+AGG + chr5.3:47811625-47811644 MS.gene035969:intron 40.0%
!!! TAATTTTGTGGTGGATGCCA+AGG + chr5.3:47811295-47811314 MS.gene035969:CDS 40.0%
ATAAACTGTGGAGGCGGTAA+TGG - chr5.3:47812186-47812205 None:intergenic 45.0%
ATTACACCAATTCCCAGCTG+TGG - chr5.3:47811279-47811298 None:intergenic 45.0%
CATGGCATCATCTACAACCT+TGG - chr5.3:47811315-47811334 None:intergenic 45.0%
CCCTAATTGGCGTATGCTTA+TGG + chr5.3:47811454-47811473 MS.gene035969:CDS 45.0%
CCTGATACAAGGCTAAAGCT+TGG + chr5.3:47812345-47812364 MS.gene035969:CDS 45.0%
CGCAGAGTCAAGTGATACTT+TGG + chr5.3:47812530-47812549 MS.gene035969:CDS 45.0%
CTTGATACAGGGCTAAAGCT+TGG + chr5.3:47812276-47812295 MS.gene035969:CDS 45.0%
CTTGGATCATTGGACCTATG+AGG - chr5.3:47812810-47812829 None:intergenic 45.0%
GACTTCTCCAACTCAAGCTT+TGG - chr5.3:47810963-47810982 None:intergenic 45.0%
GTATAAGTGTGCACTTTGCC+TGG - chr5.3:47811011-47811030 None:intergenic 45.0%
GTGGTACTTTGCCTGATACA+AGG + chr5.3:47812334-47812353 MS.gene035969:CDS 45.0%
GTTGATTGTGGCAGCATTAG+GGG - chr5.3:47810679-47810698 None:intergenic 45.0%
TAGTTTGGCAAAGACCTCGT+CGG - chr5.3:47810772-47810791 None:intergenic 45.0%
TCAACTGATGCTCAAGAACC+TGG + chr5.3:47810807-47810826 MS.gene035969:CDS 45.0%
TCTCATACAGGGCTAAAGCT+TGG + chr5.3:47812483-47812502 MS.gene035969:CDS 45.0%
TGTTGTGGAGATGTTGACAG+TGG - chr5.3:47812091-47812110 None:intergenic 45.0%
TTACACCAATTCCCAGCTGT+GGG - chr5.3:47811278-47811297 None:intergenic 45.0%
TTCCATCTTCGTCGTCTTCT+TGG - chr5.3:47810851-47810870 None:intergenic 45.0%
TTCTTGGCCAGGAACTACAA+CGG - chr5.3:47810835-47810854 None:intergenic 45.0%
TTTATCCCACAGCTGGGAAT+TGG + chr5.3:47811270-47811289 MS.gene035969:CDS 45.0%
! CATCAGTTGATACGGGATTG+AGG - chr5.3:47810797-47810816 None:intergenic 45.0%
! CTACAGCTTGGCAGTTCTAA+AGG + chr5.3:47812771-47812790 MS.gene035969:CDS 45.0%
! GATAAGATGTTTTCAGCGGG+AGG + chr5.3:47811403-47811422 MS.gene035969:CDS 45.0%
! GGCGCATTTCTGCCATATTT+TGG - chr5.3:47810577-47810596 None:intergenic 45.0%
! GGTAATGGTGTCAGTGTACT+TGG - chr5.3:47812171-47812190 None:intergenic 45.0%
! GTTGTGTTTTATCCCACAGC+TGG + chr5.3:47811263-47811282 MS.gene035969:CDS 45.0%
! TAAGATGTTTTCAGCGGGAG+GGG + chr5.3:47811405-47811424 MS.gene035969:CDS 45.0%
!! AGTTCTAAAGGTGCGGACTT+GGG + chr5.3:47812438-47812457 MS.gene035969:CDS 45.0%
!! CAGTTCTAAACGAGTGGACT+TGG + chr5.3:47812644-47812663 MS.gene035969:CDS 45.0%
!! CCAAGCTTTAGCCTTGTATC+AGG - chr5.3:47812348-47812367 None:intergenic 45.0%
!! TACGGGATTGAGGACTAGTT+TGG - chr5.3:47810787-47810806 None:intergenic 45.0%
!! TCACTTGGTGCTTGGATCAT+TGG - chr5.3:47812820-47812839 None:intergenic 45.0%
AAGTGTGCACTTTGCCTGGA+AGG - chr5.3:47811007-47811026 None:intergenic 50.0%
ACAGTGGAGGAGGAAGTTGA+AGG - chr5.3:47812075-47812094 None:intergenic 50.0%
ATACAACAGAATCGTCGGGG+AGG - chr5.3:47811094-47811113 None:intergenic 50.0%
CAGTGGAGGAGGAAGTTGAA+GGG - chr5.3:47812074-47812093 None:intergenic 50.0%
CGATGCATGGAAAGGATGGA+CGG - chr5.3:47810716-47810735 None:intergenic 50.0%
CGCAGAGTCGAGTGATACTT+TGG + chr5.3:47812461-47812480 MS.gene035969:CDS 50.0%
CTCCTCTGGACCCCAAAATA+TGG + chr5.3:47810562-47810581 MS.gene035969:CDS 50.0%
GCTGATACAGGGCTAAAGCT+TGG + chr5.3:47812552-47812571 MS.gene035969:CDS 50.0%
GGATTTGGCTAACACGAACG+TGG + chr5.3:47811232-47811251 MS.gene035969:CDS 50.0%
GGGTAAACTTCAACCTCCCA+TGG - chr5.3:47812054-47812073 None:intergenic 50.0%
GGTGGTTTCTGCGGGATATT+AGG - chr5.3:47812021-47812040 None:intergenic 50.0%
GTGCTGAGTTGTTGCCTCAT+AGG + chr5.3:47812793-47812812 MS.gene035969:CDS 50.0%
TCTTGGCCAGGAACTACAAC+GGG - chr5.3:47810834-47810853 None:intergenic 50.0%
TGTGGAGATGTTGACAGTGG+AGG - chr5.3:47812088-47812107 None:intergenic 50.0%
! AACCTCCCATGGATTGACCA+GGG - chr5.3:47812043-47812062 None:intergenic 50.0%
! AGTCTTGGGTGCAGTGGATT+TGG + chr5.3:47811217-47811236 MS.gene035969:CDS 50.0%
!! AAGGTGCTGACTTGTTCGCA+GGG + chr5.3:47812238-47812257 MS.gene035969:CDS 50.0%
!! CAGTTCTAAAGGTGCGGACT+TGG + chr5.3:47812437-47812456 MS.gene035969:CDS 50.0%
!! GCTTGGCAGTTCTAAACGAG+TGG + chr5.3:47812638-47812657 MS.gene035969:CDS 50.0%
!! GCTTGGCAGTTCTAAAGGTG+CGG + chr5.3:47812431-47812450 MS.gene035969:CDS 50.0%
!!! CATATTTTGGGGTCCAGAGG+AGG - chr5.3:47810564-47810583 None:intergenic 50.0%
!!! TGCCATATTTTGGGGTCCAG+AGG - chr5.3:47810567-47810586 None:intergenic 50.0%
AACAAGTCGGCGCATTCACG+AGG - chr5.3:47810936-47810955 None:intergenic 55.0%
AACCACCCCTGGTCAATCCA+TGG + chr5.3:47812034-47812053 MS.gene035969:CDS 55.0%
ACCACCCCTGGTCAATCCAT+GGG + chr5.3:47812035-47812054 MS.gene035969:CDS 55.0%
CTTGGCCAGGAACTACAACG+GGG - chr5.3:47810833-47810852 None:intergenic 55.0%
GCTGATACAGGGCTACAGCT+TGG + chr5.3:47812759-47812778 MS.gene035969:CDS 55.0%
GGAGATGTTGACAGTGGAGG+AGG - chr5.3:47812085-47812104 None:intergenic 55.0%
GGCCAAGAAGACGACGAAGA+TGG + chr5.3:47810846-47810865 MS.gene035969:CDS 55.0%
GTCTCTGTCACTGACCTTCC+AGG + chr5.3:47810990-47811009 MS.gene035969:CDS 55.0%
TCTTCGTCGTCTTCTTGGCC+AGG - chr5.3:47810846-47810865 None:intergenic 55.0%
TGGAATCTTGACGTCGGGAC+CGG - chr5.3:47810598-47810617 None:intergenic 55.0%
TTGACCAGGGGTGGTTTCTG+CGG - chr5.3:47812030-47812049 None:intergenic 55.0%
TTTCTCCAGCTTCGGCTGCA+GGG - chr5.3:47811172-47811191 None:intergenic 55.0%
! ACCTCCCATGGATTGACCAG+GGG - chr5.3:47812042-47812061 None:intergenic 55.0%
! CAACCTCCCATGGATTGACC+AGG - chr5.3:47812044-47812063 None:intergenic 55.0%
! GACTTGTTCGCAGAGTCGAG+TGG + chr5.3:47812315-47812334 MS.gene035969:CDS 55.0%
!! GAAGGTGCTGACTTGTTCGC+AGG + chr5.3:47812237-47812256 MS.gene035969:CDS 55.0%
!!! TTTTGGGGTCCAGAGGAGGT+CGG - chr5.3:47810560-47810579 None:intergenic 55.0%
AACTTCCCTGCAGCCGAAGC+TGG + chr5.3:47811164-47811183 MS.gene035969:CDS 60.0%
ACCCCTGGTCAATCCATGGG+AGG + chr5.3:47812038-47812057 MS.gene035969:CDS 60.0%
ATGCAGGGAGTCGGGCAAGA+AGG + chr5.3:47812219-47812238 MS.gene035969:CDS 60.0%
CATCTGGCATGCAGGGAGTC+GGG + chr5.3:47812211-47812230 MS.gene035969:CDS 60.0%
CCATCTGGCATGCAGGGAGT+CGG + chr5.3:47812210-47812229 MS.gene035969:CDS 60.0%
CCGAAGCTGGAGAAAGAGGC+CGG + chr5.3:47811177-47811196 MS.gene035969:CDS 60.0%
CCGGCCTCTTTCTCCAGCTT+CGG - chr5.3:47811180-47811199 None:intergenic 60.0%
CTTTCTCCAGCTTCGGCTGC+AGG - chr5.3:47811173-47811192 None:intergenic 60.0%
GAGTGCAGTCTTGGGTGCAG+TGG + chr5.3:47811211-47811230 MS.gene035969:CDS 60.0%
GCAAAGACCTCGTCGGTGAG+AGG - chr5.3:47810765-47810784 None:intergenic 60.0%
GCAGCCGAAGCTGGAGAAAG+AGG + chr5.3:47811173-47811192 MS.gene035969:CDS 60.0%
GGTTGAACCTCTCACCGACG+AGG + chr5.3:47810755-47810774 MS.gene035969:CDS 60.0%
TATCCCGCAGAAACCACCCC+TGG + chr5.3:47812023-47812042 MS.gene035969:CDS 60.0%
TCTTCCTCACCGACCTCCTC+TGG + chr5.3:47810548-47810567 MS.gene035969:CDS 60.0%
TGACCAGGGGTGGTTTCTGC+GGG - chr5.3:47812029-47812048 None:intergenic 60.0%
! GACTTGTTCGCAGGGTCGAG+TGG + chr5.3:47812246-47812265 MS.gene035969:CDS 60.0%
! TCCCATGGATTGACCAGGGG+TGG - chr5.3:47812039-47812058 None:intergenic 60.0%
CCAGGAACTACAACGGGGCC+AGG - chr5.3:47810828-47810847 None:intergenic 65.0%
CCGACTCCCTGCATGCCAGA+TGG - chr5.3:47812213-47812232 None:intergenic 65.0%
CCTGGCCCCGTTGTAGTTCC+TGG + chr5.3:47810825-47810844 MS.gene035969:CDS 65.0%
GGGTCCAGAGGAGGTCGGTG+AGG - chr5.3:47810555-47810574 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 47810543 47812839 47810543 ID=MS.gene035969
chr5.3 mRNA 47810543 47812839 47810543 ID=MS.gene035969.t1;Parent=MS.gene035969
chr5.3 exon 47810543 47811475 47810543 ID=MS.gene035969.t1.exon1;Parent=MS.gene035969.t1
chr5.3 CDS 47810543 47811475 47810543 ID=cds.MS.gene035969.t1;Parent=MS.gene035969.t1
chr5.3 exon 47812003 47812839 47812003 ID=MS.gene035969.t1.exon2;Parent=MS.gene035969.t1
chr5.3 CDS 47812003 47812839 47812003 ID=cds.MS.gene035969.t1;Parent=MS.gene035969.t1
Gene Sequence

>MS.gene035969

ATGTCTCTTCCTCACCGACCTCCTCTGGACCCCAAAATATGGCAGAAATGCGCCGGTCCCGACGTCAAGATTCCAAAGATTCACTCTAAAGTTTACTACTTCCCAAAAGGTCATTTGGAACATGCATGTTCTTCCCCTAATGCTGCCACAATCAACTTTCTTGATGGTTACCGTCCATCCTTTCCATGCATCGTTTTAGCAGTTGATCTCTTGGTTGAACCTCTCACCGACGAGGTCTTTGCCAAACTAGTCCTCAATCCCGTATCAACTGATGCTCAAGAACCTGGCCCCGTTGTAGTTCCTGGCCAAGAAGACGACGAAGATGGAAACAATCTTGCTTCCTATGTCAAGACTCTCACAATAACTGATACTAAATCTGCAATCAATATACCTCGTGAATGCGCCGACTTGTTCTTTCCAAAGCTTGAGTTGGAGAAGTCTAAAGAAGTCTCTGTCACTGACCTTCCAGGCAAAGTGCACACTTATACCTACACGAAACAGAGTAGACTAACTAAAGGCTGGTATAACTTTGTAAGTGAGAAGAAACTCCTCCCCGACGATTCTGTTGTATTCATCAAAAACTCTTCCGGAGAAATATATGTCGGAATTCGCAGGAACACTAACTTCCCTGCAGCCGAAGCTGGAGAAAGAGGCCGGAAATTAACTGAGAGTGCAGTCTTGGGTGCAGTGGATTTGGCTAACACGAACGTGGCGTTTGAAGTTGTGTTTTATCCCACAGCTGGGAATTGGTGTAATTTTGTGGTGGATGCCAAGGTTGTAGATGATGCCATGAAGATTGGTTGGAAATCTGGAATGAGGGCAAAGCTTCATTTGAAGAAACCCGAATCTTCAAATTTAACGATAAGATGTTTTCAGCGGGAGGGGACAATCTCTAATGATTCTTCTAATGTCCCTAATTGGCGTATGCTTATGGTACTTATGCTTTCTTATTTTGTTCTAATGGTATTTCAATTGCATATTGTTATCAATTTGAATCCATAATAAACAAGATTGATTTAGATATTGAAGCTAGAATTAGATGATTCTTGGTGAAATAGATATAAAATTTTAAGACTTAGTAGGTTGCTACCGTTTTGAATGTAGGCTTGCTTTGTGCCCTATATGATAAGTGTCAAATGTAATTCTAAAATTAAGAAACACAAAATCATTACAGAATATCCATCTGCTACATTATTATTTCCCTTGTTCTTGATATCTCATGCCGTTAATGTAAGTAGATTACGTTTTAGAATCAATTGTTTGTATCACACTCTCTTTTATATGCAAGTTTAAGAACCTTCTAAGCATTTCTTATTGTAAATACTCTTATTACATATATATACTCATGTTATTAATTGTTATGAAACTTATTAATTGATGTCTAAATACATATATATACTAAGTTATCAAATATTTCAAATTATTGATATTGATTACCATTTTTTATCTCTTTATCATAGGTTAAATGGGATGAACCTAATATCCCGCAGAAACCACCCCTGGTCAATCCATGGGAGGTTGAAGTTTACCCTTCAACTTCCTCCTCCACTGTCAACATCTCCACAACAAAAAGTCCTAAACTTTCTCAGAGTTCTTCTCCCCGACAAATTCAAAATTCTTTAATGCCAAGTACACTGACACCATTACCGCCTCCACAGTTTATTTTTCCATCTGGCATGCAGGGAGTCGGGCAAGAAGGTGCTGACTTGTTCGCAGGGTCGAGTGGTACTTTGCTTGATACAGGGCTAAAGCTTGGCAGTTCTAAAGATGCTGACTTGTTCGCAGAGTCGAGTGGTACTTTGCCTGATACAAGGCTAAAGCTTGGCAGTTCTAAAGATGCTGACTTGTTCGCAGAGTCGAGTGGTACTTTGTCTGATACAAGGCTAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCGCAGAGTCGAGTGATACTTTGTCTCATACAGGGCTAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCGCAGAGTCAAGTGATACTTTGGCTGATACAGGGCTAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCGCAGAGTCGAGTGATACTTTGGCTGATACAGGGCTAAAGCTTGGCAGTTCTAAACGAGTGGACTTGGGCGCAGAGTCGAGTGATACTTTGGCTGATACAGGGCTAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCGCAGAGTCGAGTGATACTTTGGCTGATACAGGGCTACAGCTTGGCAGTTCTAAAGGTGCTGAGTTGTTGCCTCATAGGTCCAATGATCCAAGCACCAAGTGA
Protein sequence

>MS.gene035969.t1

MSLPHRPPLDPKIWQKCAGPDVKIPKIHSKVYYFPKGHLEHACSSPNAATINFLDGYRPSFPCIVLAVDLLVEPLTDEVFAKLVLNPVSTDAQEPGPVVVPGQEDDEDGNNLASYVKTLTITDTKSAINIPRECADLFFPKLELEKSKEVSVTDLPGKVHTYTYTKQSRLTKGWYNFVSEKKLLPDDSVVFIKNSSGEIYVGIRRNTNFPAAEAGERGRKLTESAVLGAVDLANTNVAFEVVFYPTAGNWCNFVVDAKVVDDAMKIGWKSGMRAKLHLKKPESSNLTIRCFQREGTISNDSSNVPNWRMLMVKWDEPNIPQKPPLVNPWEVEVYPSTSSSTVNISTTKSPKLSQSSSPRQIQNSLMPSTLTPLPPPQFIFPSGMQGVGQEGADLFAGSSGTLLDTGLKLGSSKDADLFAESSGTLPDTRLKLGSSKDADLFAESSGTLSDTRLKLGSSKGADLGAESSDTLSHTGLKLGSSKGADLGAESSDTLADTGLKLGSSKGADLGAESSDTLADTGLKLGSSKRVDLGAESSDTLADTGLKLGSSKGADLGAESSDTLADTGLQLGSSKGAELLPHRSNDPSTK