AlfalfaGEDB | MS.gene03602

M. sativa cultivar XinJiangDaYe / MS.gene03602

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01820.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03602.t1	RHN81286.1	87	115	12	1	45	159	414	525	3.90E-46	195.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03602.t1	P53681	65.5	87	25	3	269	355	202	283	3.7e-21	104.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03602.t1	A0A072VNB4	87.0	115	12	1	45	159	454	565	2.8e-46	195.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03602.t1	MTR_1g090723	71.233	146	23	2	45	190	277	403	4.42e-60	200
MS.gene03602.t1	MTR_1g090723	71.233	146	23	2	45	190	317	443	1.32e-59	200
MS.gene03602.t1	MTR_1g090723	86.207	116	13	1	45	160	414	526	1.09e-58	200
MS.gene03602.t1	MTR_1g090723	86.207	116	13	1	45	160	455	567	1.85e-58	200
MS.gene03602.t1	MTR_1g090723	86.207	116	13	1	45	160	454	566	1.96e-58	200
MS.gene03602.t1	MTR_7g071990	89.474	95	9	1	173	267	433	526	1.31e-46	170
MS.gene03602.t1	MTR_7g071990	89.474	95	9	1	173	267	433	526	1.35e-46	170
MS.gene03602.t1	MTR_0036s0150	69.697	99	29	1	63	160	382	480	5.90e-36	137
MS.gene03602.t1	MTR_4g086660	71.429	84	19	3	269	352	191	269	5.32e-26	109
MS.gene03602.t1	MTR_8g079790	68.000	75	21	1	281	352	186	260	9.70e-23	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03602.t1	AT3G50530	84.906	53	8	0	300	352	228	280	1.03e-22	100
MS.gene03602.t1	AT3G50530	84.906	53	8	0	300	352	228	280	1.08e-22	100
MS.gene03602.t1	AT2G41140	64.286	84	25	3	269	352	177	255	1.16e-22	99.8
MS.gene03602.t1	AT3G19100	64.286	84	25	3	269	352	198	276	1.29e-22	99.8
MS.gene03602.t1	AT3G56760	61.905	84	27	3	269	352	178	256	2.94e-21	95.9
MS.gene03602.t1	AT1G49580	84.000	50	8	0	303	352	233	282	3.06e-21	95.9
MS.gene03602.t1	AT2G46700	79.245	53	11	0	300	352	42	94	3.69e-21	94.4
MS.gene03602.t1	AT2G46700	79.245	53	11	0	300	352	42	94	3.69e-21	94.4
MS.gene03602.t1	AT2G46700	79.245	53	11	0	300	352	223	275	5.86e-21	94.7
MS.gene03602.t1	AT3G08840	54.737	95	36	2	173	267	430	517	6.82e-20	91.3

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Find 80 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTTCAGTCTGTTGTTG+AGG	0.571170	3.4:-32810458	None:intergenic
AACTCTGATGCAAATGTAGG+TGG	0.606514	3.4:+32813846	None:intergenic
AAGTCATTTCCCCATCGTGA+AGG	0.630032	3.4:-32812675	MS.gene03602:CDS
AATGCGATGGATTGGATGGT+GGG	0.566825	3.4:-32813717	MS.gene03602:CDS
AATGTGGAGGGCGAAACCTA+TGG	0.578503	3.4:-32814145	MS.gene03602:CDS
AATGTTTGGCTCAATTTGCT+AGG	0.470391	3.4:-32812582	MS.gene03602:CDS
AATTCAGCTCATATAACTGC+AGG	0.522347	3.4:-32813774	MS.gene03602:CDS
AATTGGATGACTCAGCTGCA+GGG	0.612514	3.4:+32813793	None:intergenic
AATTGGGTTGAAACAAACAA+GGG	0.695621	3.4:-32814781	MS.gene03602:CDS
ACAGTAGACACACCCCTAAT+AGG	0.368947	3.4:+32814584	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCTCTTTCTGTTATTC+AGG	-	chr3.4:32812451-32812470	MS.gene03602:intron	30.0%
AACATGACAGAATAGGATAA+GGG	-	chr3.4:32812019-32812038	MS.gene03602:intron	30.0%
AATAAGAGAATTGAAGTTGG+AGG	+	chr3.4:32812808-32812827	None:intergenic	30.0%
AATAATAACTCCTTCCCAAA+AGG	+	chr3.4:32812279-32812298	None:intergenic	30.0%
AGTACTTATGTCTTAGTCAT+TGG	+	chr3.4:32813055-32813074	None:intergenic	30.0%
ATAGCAAACTTCAATTAGGT+AGG	+	chr3.4:32813989-32814008	None:intergenic	30.0%
ATGATTTATTGCTTCTTCAG+AGG	-	chr3.4:32814574-32814593	MS.gene03602:intron	30.0%
ATTGTATTCCAGAGCTTAAA+CGG	+	chr3.4:32813473-32813492	None:intergenic	30.0%
CCTAATAGGATTGCTAAATA+CGG	+	chr3.4:32810682-32810701	None:intergenic	30.0%
CGTATTTAGCAATCCTATTA+GGG	-	chr3.4:32810680-32810699	MS.gene03602:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	32810460	32814839	32810460	ID=MS.gene03602
chr3.4	mRNA	32810460	32814839	32810460	ID=MS.gene03602.t1;Parent=MS.gene03602
chr3.4	exon	32814745	32814839	32814745	ID=MS.gene03602.t1.exon1;Parent=MS.gene03602.t1
chr3.4	CDS	32814745	32814839	32814745	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1
chr3.4	exon	32814597	32814645	32814597	ID=MS.gene03602.t1.exon2;Parent=MS.gene03602.t1
chr3.4	CDS	32814597	32814645	32814597	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1
chr3.4	exon	32814053	32814167	32814053	ID=MS.gene03602.t1.exon3;Parent=MS.gene03602.t1
chr3.4	CDS	32814053	32814167	32814053	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1
chr3.4	exon	32813706	32813924	32813706	ID=MS.gene03602.t1.exon4;Parent=MS.gene03602.t1
chr3.4	CDS	32813706	32813924	32813706	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1
chr3.4	exon	32813540	32813607	32813540	ID=MS.gene03602.t1.exon5;Parent=MS.gene03602.t1
chr3.4	CDS	32813540	32813607	32813540	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1
chr3.4	exon	32812572	32812826	32812572	ID=MS.gene03602.t1.exon6;Parent=MS.gene03602.t1
chr3.4	CDS	32812572	32812826	32812572	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1
chr3.4	exon	32811581	32811652	32811581	ID=MS.gene03602.t1.exon7;Parent=MS.gene03602.t1
chr3.4	CDS	32811581	32811652	32811581	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1
chr3.4	exon	32811089	32811120	32811089	ID=MS.gene03602.t1.exon8;Parent=MS.gene03602.t1
chr3.4	CDS	32811089	32811120	32811089	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1
chr3.4	exon	32810907	32810948	32810907	ID=MS.gene03602.t1.exon9;Parent=MS.gene03602.t1
chr3.4	CDS	32810907	32810948	32810907	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1
chr3.4	exon	32810597	32810705	32810597	ID=MS.gene03602.t1.exon10;Parent=MS.gene03602.t1
chr3.4	CDS	32810597	32810705	32810597	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1
chr3.4	exon	32810460	32810516	32810460	ID=MS.gene03602.t1.exon11;Parent=MS.gene03602.t1
chr3.4	CDS	32810460	32810516	32810460	ID=cds.MS.gene03602.t1;Parent=MS.gene03602.t1

Gene Sequence

>MS.gene03602

ATGAACCTCTTAACCTCTTTCTCGTTCTTCAATTCCAATTGGGTTGAAACAAACAAGGGAACTTTTGTTGATCGAAATCAGATTGTGTTTGAAGGGTGAGTAGAGACTTTACTACCATTGCTACTTGTTTTTGCTGTGAAACATGGCCTGAATTGAATTGAAATTTGAGGTTGGTCTTGATATAACTAGTTTAGTGTTGAAGGGAAAGGGAAAATGCTTCCGTATTTAGCAATCCTATTAGGGGTGTGTCTACTGTATAGGAAAGAACTTGTGGGTATAAACACGAAACTTAACTGCACTTTTTATATGTTAATATGTTATTATTCTTTATCTAAAAAAATTAATTTCAAACCATGATAATTGTAAAACCTAATTTTCAGCATTAATGTTTGTGTGTTTTTATATATTTTGTTCTTAAGAAAAGTTGAAATAGTGATGAATGTCATATTGCATTCGCTAGATGAATAGTGATGGTAATATGTCTATCATTCATTACCTATTAGTGCTGTTTTTAGCTGGTGTGTCTTGTGTTGATGTAGTACCCCAGTATGGCTCTCCATTGAATGTGTTTTATTTTCTTTGTTTTATGTTGGTGTAGTACTTTAATTTTATAGTTATATCTAAGTTGATTTGTATTATAGCCGTCTTAAAATCTTTTGGGGTCATTGACAGAATGTGGAGGGCGAAACCTATGGTAGTTCCTTGACAAACAAACATGTTTTTGAAGCACAATCTGGTAATGAAGATTTACCAAAGGAGGATCTAGCAGCGTCAAATTGGTTCTCAGGTGAGAGTCCCATTCACTTTAAACCCTGATTTCTTAAGCTGTTTTTTTTTTGTGTTATATTGTGGACTGATATAGAATGTGAATTAGTTCTCTATTCCTTCTAATTTTTGTTTTTACCACTTCGACAGAAGATGCAAACACTTTTGCGAAGCATGCCAACAGGTTGTTGGCCAACATACCTGCTCCACCTACATTTGCATCAGAGTTTCCTGCTAAGGAGTTGGCTTGTGAGATACACCCTGCAGCTGAGTCATCCAATTCAGCTCATATAACTGCAGGTATGATCAGCATTACAGACATTACTTTTAGAGGCAATGCGATGGATTGGATGGTGGGCAAGAATGGAGGTTTTAACACCGTTATGTCTATTTTACTTTATGCATGTTAGCTTTGTTTTGCATATTGGGCAAAAATTAATTAGCCTCATTTCTTTTTCTGCTTACAGCTTCACCTTGGGTTCTGTATCTTAGCTGTTGTTGCCCCTCCTATAGTTTTCAAAGGAAAATCCTTGACGTAAGTTGACTTCATTTATACATACCTCATTTAACATGCCACTGTTGTTTATTCTTTATTGCTTATACATATGGCTTTATATGTATAACCTGGAGATTGAGAAATTTAAATTTGTCTTTCCACAGACTTGGTTTTTAAAATAATGGGGCTATTTGATCCATGTACTCAACCCTATTTAGCTGACGATGCATAAGAAAACATCAGGCTGAAACTATTTTCACCTGAAATTTGATATGTGTACATCTAGGTAAGGATAAACAACATGACAGAATAGGATAAGGGTTAAGATCTGGATAATGTTATGCAGTTCAAAAATTATATGATGAATGAAACTGGTTAGAATATACCGTATTGACTTGAGGCTAAGACTAGCATAAGGGTTAAGATCTGTCTGTCACAGACACGACACCAATCCGTTCTGTTCTATTCTGTTTCGTGTATTCTAAATTTGTAACTCATCTTACGACAGTAGAGGAGATGAAAAGTATAACCTGTGGTTTCTGTTCTGTTATCCAACCTTTTGGGAAGGAGTTATTATTAGTTTTATGTGAGAGTTTAGCATTGAAAAAGTAAATTGGACTCTGCAGCAAGCTACCTAACTACAACTTTAGTTTTTGCTAAAAGTCATGTGTTGTAAGGATATATGTTTTGTGCATTGATGTATGGATAACTCTTGTTATTCACTGCCTGAAAATGCTCTTTCTGTTATTCAGGTTGGGTTTTCTCATACGAACATCCTTAGGAGCATTGTTCACCATGCTTGCTTGCGGTTTCCAAATCTTGCTTCAGTCAGTGGCATATCAAGTCAGATTCCAAGTAGATCAAAATCTTCGAAGCCTAACAAGTCATTTCCCCATCGTGAAGGAGCTCAAAAAGTTTTTGTCATTTTTGGAGGTGACACATCAGAACGGCAAGTATCTCTCATGAGTGGTACAAATGTTTGGCTCAATTTGCTAGGCTTCAATGATGTAAGTATCCACAATCAAGAAAACCTTCAAATTTTTACAACTTTAGTTATGTCCATTCAATGGAAGTGTAATTATGTCCTCCAACTTCAATTCTCTTATTTTTATAAAGTTTTAAGGAAATAGATGTGTAAGTATAAATCTAAGAATTTTTTCACTCATTTGTAAGTTGTAACCAAATATCAGAAACTTACCAATTATCTATTATTTTTGTAGTGTAAGTAGAGCATGGTTATTTTAGACTAAAAATGTTTTCATAAATATGAGATTTTGGTTTATATTTAGCCGTTAATAAAAAAAAAACTCAAGATAATTTGCATGTCTTTGCCAATGACTAAGACATAAGTACTGTTTCATTCTGTCAACTTATGGCATCAATATGATTCAGCAACAATATAGATTGAATTAGAATGGAATGGAATGGATTATGTGACTGGTCCAAAGGAAACAGATACAATAACATAGTATTCAGTATTGAATCCTTAGTCATTACCTCGTCATCGTGTCTCGCTACTCTTCTCCAATTTTATATTTCTCTGTAGCTTACTACATAATTTTCACATATGGCATTACTGTTATCCAGTCATGCTCGATGCCCTTGTTCATTTGGGCTCTGATCTCTTACAGTTATTCATAATGCAAGGTTTCCTAACATTCTGAGGGATTCTGTTTTGTATGTTTTGACCAATATTGCTTAAGTATCATTTTCACAGCATGTAGTTCGTTTGATAGTTAATAGCTCAATCCGTTTAAGCTCTGGAATACAATGTTGTTGTGTTTTTCTAGTTTTGATTTCATTGTATTTTAATTTCAATTTCATTGCTTATTGATGTGTTGTTGTGGTTTGTGTTGATGATTACATGATTATATAGCTATAGTCCCTTCATTGCATCTAATGTTGACTTGTTATTTTGCTTTTCAGTCTTTGTTGAGATTGATAACAGGAAATTCTGCTTACAACTTGAATGAGGAGACTGATGTAGCACCTTTTGAGGTGAGCATAATGAAAATTGAATTTTGATGTTGTTTGCTTTGGGCCCTGTTTGGCTAAACAGGTGTTTATAACATAAATGCTCATTTTATGCTTATGTATAAATGCGCATTATATGATGACTGGACTGACCCCATTTCTCTATAATGGTAATTTTCATAAAACTTCAAAAATGATGCAAGCCTCTAACATAGTTGCTATAAACTTAATTGCTAGGTTGGAGCAAGTTGAATTAACTACACCTTTTCTTTGTTTTACGCAGCATCTTTACCTACCTAATTGAAGTTTGCTATCTTTGGTTGATTTAATATCATTCCTTTTCATCAAGTACACTTGTCTCTGAAAAGGTGAGATAATATTTCTAAATTTTAATCCATGTTATTTATTTTTTTCTTAAGGTATTGTGCTGGAGTTTGTGTCTAACTGCCAATGGAATTCCTTGTTATTCGTTTTGCTGGTGTAGCATGAGTATTTACTCTATCGTAATGTGAAAAGGTGATAAGAAATGTATGTAGTGACACCAAGGTGATTTATTAGGTTTAACATTTATTTGTTGATTTGAATGCTTACTGCTTGTGAGAATTTTTTGTTTATATAGCATATTCATAATTAACTGAATACTATCGACGTTTCAGGTTATGTGAAGGGGGAGAGCTATTAGACATGATATTGTCAAGGTAATTATTATGTTGTCAATAGCATGAAATAGAGCCGCTATCGGCGCAGTGCCGTGGGTGACCTCCCCCACATGCACCGTCTCACCCCAGAAGTGAGTAGCGGCCATCAGAGCCGCGTTAGCGGCGTTATTTCAATAATAAAATTTGACTTAGTAATTGCACCTTGCCACTTACTAGCCACATGATTTATTGCTTCTTCAGAGGAGGGAAATACTCAGAAGATGATGCCAAGGCTGTCATGGTACAAATACTAAATGTTGTTGCATTTTGTCATCTTCAGAGTGTGGTGCACAGAGATCTTAAGCCTGAGGTGAGCATATTCTTTCATTTGTCTTTCAGATGGTTAATGTCTTAGAGTCTGCTATAGTTAATCATATTTAAATATCTTAGGGTCATATTTCTCTGTTCTTGATGCCTATGCTTACCAAAGTTTCAGTCTGTTGTTGA

Protein sequence

>MS.gene03602.t1

MNLLTSFSFFNSNWVETNKGTFVDRNQIVFEGVEGKGKMLPYLAILLGNVEGETYGSSLTNKHVFEAQSGNEDLPKEDLAASNWFSEDANTFAKHANRLLANIPAPPTFASEFPAKELACEIHPAAESSNSAHITAGMISITDITFRGNAMDWMVGKNGASPWVLYLSCCCPSYSFQRKILDVGFSHTNILRSIVHHACLRFPNLASVSGISSQIPSRSKSSKPNKSFPHREGAQKVFVIFGGDTSERQVSLMSGTNVWLNLLGFNDSLLRLITGNSAYNLNEETDVAPFEHEYLLYRNVKRLCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQSVVHRDLKPEGHISLFLMPMLTKVSVCC