AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036020.t1 MTR_5g058860 96.654 508 11 3 5 508 1 506 0.0 1007
MS.gene036020.t1 MTR_3g072710 61.014 513 161 12 16 502 4 503 0.0 572
MS.gene036020.t1 MTR_8g093070 37.313 402 214 14 107 499 124 496 7.19e-63 213
MS.gene036020.t1 MTR_7g027190 35.749 414 218 14 108 500 288 674 7.93e-63 217
MS.gene036020.t1 MTR_7g074650 35.027 374 218 10 126 498 442 791 1.13e-52 191
MS.gene036020.t1 MTR_3g065980 34.314 408 209 15 116 498 166 539 2.10e-51 184
MS.gene036020.t1 MTR_1g069725 33.168 404 235 11 100 500 93 464 3.71e-48 173
MS.gene036020.t1 MTR_4g076020 35.262 363 192 12 151 506 110 436 3.92e-47 169
MS.gene036020.t1 MTR_8g442410 28.161 522 317 16 6 498 32 524 9.06e-44 162
MS.gene036020.t1 MTR_5g097480 30.591 389 242 11 119 498 174 543 3.41e-43 161
MS.gene036020.t1 MTR_1g096030 30.918 414 240 12 112 501 70 461 1.67e-41 155
MS.gene036020.t1 MTR_3g056110 32.055 365 222 11 143 498 194 541 2.25e-41 156
MS.gene036020.t1 MTR_1g029420 31.525 387 237 14 121 498 224 591 1.01e-40 155
MS.gene036020.t1 MTR_2g082090 30.928 388 242 11 119 498 209 578 2.45e-40 154
MS.gene036020.t1 MTR_4g104020 29.440 411 258 10 103 500 130 521 6.47e-40 151
MS.gene036020.t1 MTR_4g077760 31.897 348 221 7 153 498 221 554 1.96e-39 150
MS.gene036020.t1 MTR_3g089055 30.052 386 244 11 121 498 197 564 3.46e-39 150
MS.gene036020.t1 MTR_3g089055 30.052 386 244 11 121 498 202 569 3.66e-39 150
MS.gene036020.t1 MTR_4g102790 30.941 404 234 17 115 499 285 662 6.13e-38 147
MS.gene036020.t1 MTR_4g133660 29.692 357 226 10 153 500 204 544 2.33e-37 144
MS.gene036020.t1 MTR_5g094450 27.826 460 293 13 54 498 96 531 1.03e-34 137
MS.gene036020.t1 MTR_2g097410 27.189 434 268 15 89 499 333 741 2.32e-33 134
MS.gene036020.t1 MTR_2g026250 26.611 357 237 10 153 500 257 597 3.86e-33 133
MS.gene036020.t1 MTR_4g064200 28.133 391 244 15 122 499 284 650 3.08e-30 125
MS.gene036020.t1 MTR_2g097467 27.095 358 232 9 152 499 316 654 1.04e-29 123
MS.gene036020.t1 MTR_4g064150 28.967 397 238 15 122 499 362 733 2.54e-29 122
MS.gene036020.t1 MTR_0092s0100 30.052 386 241 14 119 500 372 732 2.88e-28 119
MS.gene036020.t1 MTR_0092s0100 30.052 386 241 14 119 500 369 729 3.03e-28 119
MS.gene036020.t1 MTR_2g034250 25.926 405 264 11 111 498 199 584 6.76e-28 117
MS.gene036020.t1 MTR_4g064120 25.056 443 282 14 80 501 212 625 1.14e-27 117
MS.gene036020.t1 MTR_7g062120 25.510 392 261 9 117 498 369 739 1.29e-27 117
MS.gene036020.t1 MTR_4g064160 26.047 430 280 13 89 499 274 684 3.36e-27 116
MS.gene036020.t1 MTR_8g077940 29.067 375 234 13 134 500 192 542 4.10e-27 115
MS.gene036020.t1 MTR_3g022830 25.373 402 229 11 151 498 51 435 6.76e-27 113
MS.gene036020.t1 MTR_2g034260 26.442 416 263 15 101 498 193 583 7.33e-27 114
MS.gene036020.t1 MTR_2g097463 26.816 358 233 10 152 499 317 655 8.78e-27 114
MS.gene036020.t1 MTR_2g097473 26.536 358 234 9 152 499 316 654 8.84e-27 114
MS.gene036020.t1 MTR_4g064180 25.995 427 260 17 99 501 231 625 3.95e-26 112
MS.gene036020.t1 MTR_2g099110 29.121 364 216 13 70 411 8 351 5.74e-26 110
MS.gene036020.t1 MTR_2g034280 23.899 477 319 15 38 498 126 574 2.87e-25 109
MS.gene036020.t1 MTR_2g097390 26.615 387 253 13 122 498 275 640 7.94e-25 108
MS.gene036020.t1 MTR_4g097080 26.042 384 265 10 121 498 132 502 1.04e-24 107
MS.gene036020.t1 MTR_4g076140 32.479 234 134 6 108 337 34 247 2.06e-24 106
MS.gene036020.t1 MTR_5g015490 27.681 401 243 15 121 498 113 489 8.22e-24 104
MS.gene036020.t1 MTR_2g097350 26.343 391 249 15 122 498 274 639 1.53e-23 104
MS.gene036020.t1 MTR_2g097310 24.163 418 277 12 102 499 241 638 2.55e-23 103
MS.gene036020.t1 MTR_5g009080 31.780 236 137 7 109 340 43 258 4.11e-23 102
MS.gene036020.t1 MTR_7g109580 24.691 405 265 15 111 501 178 556 2.72e-22 100
MS.gene036020.t1 MTR_2g097380 24.650 357 214 10 152 499 251 561 8.94e-22 99.0
MS.gene036020.t1 MTR_4g026485 25.455 385 251 14 123 500 270 625 2.66e-19 91.7
MS.gene036020.t1 MTR_7g069740 26.730 419 256 18 99 498 197 583 1.54e-18 89.4
MS.gene036020.t1 MTR_7g057230 27.742 310 195 10 200 498 365 656 3.14e-15 79.0
MS.gene036020.t1 MTR_1g086970 22.983 409 274 13 111 501 95 480 5.81e-15 77.8
MS.gene036020.t1 MTR_2g089100 24.634 410 271 12 116 499 46 443 1.51e-14 76.3
MS.gene036020.t1 MTR_8g020840 23.929 397 264 14 121 498 170 547 1.79e-12 70.1
MS.gene036020.t1 MTR_6g047750 26.087 391 249 15 123 498 296 661 1.74e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036020.t1 AT4G08250 51.324 491 203 14 23 498 7 476 7.58e-149 435
MS.gene036020.t1 AT3G54220 36.139 404 224 13 106 502 277 653 7.32e-55 195
MS.gene036020.t1 AT3G03450 31.034 493 282 16 41 498 75 544 2.33e-52 186
MS.gene036020.t1 AT5G41920 35.821 402 220 14 106 498 27 399 2.48e-52 183
MS.gene036020.t1 AT5G17490 35.606 396 220 15 116 504 154 521 3.87e-50 180
MS.gene036020.t1 AT1G66350 32.737 391 221 13 116 498 149 505 4.67e-46 168
MS.gene036020.t1 AT2G01570 32.997 397 228 16 111 498 213 580 2.06e-44 165
MS.gene036020.t1 AT1G14920 31.959 388 234 13 116 498 166 528 3.30e-43 161
MS.gene036020.t1 AT5G48150 29.241 448 287 12 59 498 64 489 2.13e-42 158
MS.gene036020.t1 AT5G48150 29.241 448 287 12 59 498 64 489 2.13e-42 158
MS.gene036020.t1 AT5G48150 29.241 448 287 12 59 498 64 489 2.13e-42 158
MS.gene036020.t1 AT5G48150 29.241 448 287 12 59 498 64 489 2.13e-42 158
MS.gene036020.t1 AT2G04890 30.612 392 247 11 110 498 43 412 1.50e-40 151
MS.gene036020.t1 AT1G55580 32.208 385 206 12 155 498 74 444 5.36e-40 150
MS.gene036020.t1 AT4G17230 31.990 397 230 12 117 498 153 524 1.17e-39 151
MS.gene036020.t1 AT4G17230 31.990 397 230 12 117 498 153 524 1.17e-39 151
MS.gene036020.t1 AT1G50600 30.663 362 231 8 143 498 178 525 3.07e-39 150
MS.gene036020.t1 AT1G50600 30.939 362 230 8 143 498 253 600 6.18e-39 150
MS.gene036020.t1 AT5G66770 30.693 404 261 10 99 498 195 583 6.33e-39 150
MS.gene036020.t1 AT1G50600 30.939 362 230 8 143 498 249 596 6.68e-39 150
MS.gene036020.t1 AT3G50650 32.787 366 216 10 144 498 195 541 1.58e-38 148
MS.gene036020.t1 AT1G63100 29.512 410 245 13 112 499 242 629 2.60e-34 137
MS.gene036020.t1 AT1G63100 29.512 410 245 13 112 499 267 654 3.97e-34 136
MS.gene036020.t1 AT1G21450 28.369 423 266 15 87 498 196 592 5.62e-32 130
MS.gene036020.t1 AT4G37650 28.030 396 253 11 122 498 146 528 6.18e-30 123
MS.gene036020.t1 AT4G36710 29.380 371 227 13 138 498 139 484 2.52e-29 121
MS.gene036020.t1 AT3G60630 28.606 409 260 11 107 500 232 623 3.10e-29 122
MS.gene036020.t1 AT2G29065 27.569 399 246 11 122 499 252 628 3.77e-29 121
MS.gene036020.t1 AT3G46600 25.000 444 265 14 84 498 174 578 6.63e-28 117
MS.gene036020.t1 AT1G07530 26.512 430 288 12 78 499 356 765 7.18e-28 118
MS.gene036020.t1 AT3G46600 27.027 407 229 14 121 498 3 370 1.00e-27 114
MS.gene036020.t1 AT3G46600 25.000 444 265 14 84 498 142 546 1.33e-27 116
MS.gene036020.t1 AT2G29060 26.566 399 255 14 119 501 281 657 3.87e-27 115
MS.gene036020.t1 AT2G29060 26.566 399 255 14 119 501 318 694 5.16e-27 115
MS.gene036020.t1 AT5G59450 25.740 439 279 13 83 498 183 597 1.55e-26 114
MS.gene036020.t1 AT1G07520 25.231 432 287 9 81 499 285 693 2.43e-25 110
MS.gene036020.t1 AT1G07520 25.231 432 287 9 81 499 286 694 2.44e-25 110
MS.gene036020.t1 AT1G07520 25.000 448 288 10 71 499 111 529 3.14e-25 109
MS.gene036020.t1 AT1G07520 25.000 448 288 10 71 499 111 529 3.14e-25 109
MS.gene036020.t1 AT2G45160 27.295 403 242 16 119 500 268 640 2.96e-24 107
MS.gene036020.t1 AT2G37650 25.964 389 259 11 119 498 332 700 2.91e-23 104
MS.gene036020.t1 AT2G37650 25.840 387 262 10 119 498 344 712 3.32e-23 103
MS.gene036020.t1 AT1G50420 31.579 228 136 6 113 337 48 258 3.92e-22 99.8
MS.gene036020.t1 AT1G50420 30.921 152 102 3 350 500 331 480 2.64e-12 69.3
MS.gene036020.t1 AT4G00150 27.865 384 238 13 123 502 209 557 6.96e-22 99.4
MS.gene036020.t1 AT5G52510 28.135 327 194 12 196 498 330 639 1.46e-16 83.2
MS.gene036020.t1 AT3G49950 25.000 400 263 14 121 501 29 410 5.63e-14 74.3
MS.gene036020.t1 AT3G13840 24.167 480 302 14 58 498 53 509 3.68e-13 72.0

Find 168 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGGTTTCCTATGAATAAA+TGG 0.181822 5.2:-49784787 MS.gene036020:CDS
GACTCTTGTTTGTGCCTGTT+AGG 0.230972 5.2:+49785593 None:intergenic
TTGTCAAGCAAAGTTGTTAT+TGG 0.254379 5.2:-49784603 MS.gene036020:CDS
CGGTGCCGTTTAGCAGAGTT+TGG 0.274447 5.2:+49785470 None:intergenic
CTTCACCAGTCTTGTACAAC+TGG 0.307827 5.2:+49784708 None:intergenic
TTGGAGAATTCTAGAAAATC+TGG 0.308659 5.2:+49785916 None:intergenic
ACGACCTTGTTATCTAGATT+TGG 0.309984 5.2:+49785748 None:intergenic
TTTGCCACTGTTCAAGAAAC+TGG 0.314348 5.2:-49785136 MS.gene036020:CDS
GGAAACAATAAGTTGGTGTT+AGG 0.333033 5.2:-49784545 MS.gene036020:CDS
GGGGAGTGGTTGGGTGTGGA+AGG 0.333319 5.2:-49784659 MS.gene036020:CDS
CCGTCTAGTGCACCTCCTTA+TGG 0.339880 5.2:-49785629 MS.gene036020:CDS
TGTCAAGCAAAGTTGTTATT+GGG 0.347692 5.2:-49784602 MS.gene036020:CDS
GGCTGCTTTCTGCTTCTGTT+TGG 0.348023 5.2:-49784508 MS.gene036020:CDS
TTGAACGGTGCCAAGGAGTT+AGG 0.348949 5.2:-49784926 MS.gene036020:CDS
ATTTGCCACATCTTAGTTAC+CGG 0.358640 5.2:-49784973 MS.gene036020:CDS
GCTTGTTCGCGGAGAGGCTT+TGG 0.359996 5.2:-49785014 MS.gene036020:CDS
AGGCTTTGTGGGTTTGTTCA+TGG 0.365262 5.2:-49784852 MS.gene036020:CDS
CTCCTAGCCCATTTATTCAT+AGG 0.371100 5.2:+49784779 None:intergenic
TTGGTCCCCTCTCCTTGACT+TGG 0.383703 5.2:-49785848 MS.gene036020:CDS
GCGGCAGCGGAGGCCCTAAC+AGG 0.386266 5.2:-49785607 MS.gene036020:CDS
CATAGTGGACTTTGATATCA+TGG 0.386901 5.2:-49785287 MS.gene036020:CDS
ACAATAAGTTGGTGTTAGGT+TGG 0.396110 5.2:-49784541 MS.gene036020:CDS
CATCAACGATGCAGGCTTTG+TGG 0.396922 5.2:-49784864 MS.gene036020:CDS
GGAGCAAGAGAGGTTCTCTT+GGG 0.397324 5.2:-49784681 MS.gene036020:CDS
TTTCATGAGTAACAGCTTCA+AGG 0.400010 5.2:+49785320 None:intergenic
ATGTATGACTCGTTCGAGGC+TGG 0.402016 5.2:-49784806 MS.gene036020:CDS
AGGAGCAAGAGAGGTTCTCT+TGG 0.407648 5.2:-49784682 MS.gene036020:CDS
CGTCAAGTTTGCTCATTTCA+CGG 0.410498 5.2:-49785356 MS.gene036020:CDS
ATCAACGATGCAGGCTTTGT+GGG 0.413507 5.2:-49784863 MS.gene036020:CDS
ACTCTTGTTTGTGCCTGTTA+GGG 0.415722 5.2:+49785594 None:intergenic
GGGAGTGGTTGGGTGTGGAA+GGG 0.418452 5.2:-49784658 MS.gene036020:CDS
CACAAAGCCTGCATCGTTGA+TGG 0.420533 5.2:+49784865 None:intergenic
TGTATGACTCGTTCGAGGCT+GGG 0.428573 5.2:-49784805 MS.gene036020:CDS
GGGCCTCCGCTGCCGCCATA+AGG 0.429881 5.2:+49785614 None:intergenic
TGCGAAGATGTGGGCCCGGC+AGG 0.434472 5.2:+49785212 None:intergenic
CTCCGTTGTCGAATTTGAGT+TGG 0.441756 5.2:+49785684 None:intergenic
CTTCTGATGACGACACCATT+TGG 0.442452 5.2:-49785867 MS.gene036020:CDS
TTATCTAGATTTGGAGCAAC+GGG 0.447526 5.2:+49785757 None:intergenic
CCTCCTTATGGCGGCAGCGG+AGG 0.448204 5.2:-49785617 MS.gene036020:CDS
GCCACTGAGCCCATTATTCG+TGG 0.457871 5.2:+49784731 None:intergenic
TGGGTATAGAGTGGAAGAGT+TGG 0.459148 5.2:-49784567 MS.gene036020:CDS
TCGCGAAAAGAAGGCCTGCC+GGG 0.460380 5.2:-49785226 MS.gene036020:CDS
GGAGGAGGAGGATGACAGAA+AGG 0.460604 5.2:-49785656 MS.gene036020:CDS
GGGTATAGAGTGGAAGAGTT+GGG 0.462213 5.2:-49784566 MS.gene036020:CDS
AAGCTGTTACTCATGAAAGA+AGG 0.464529 5.2:-49785315 MS.gene036020:CDS
CAGTGAGAAGGCAGAGTTTG+TGG 0.469456 5.2:+49785437 None:intergenic
TAACAGCTTCAAGGATGGCT+TGG 0.472218 5.2:+49785329 None:intergenic
TTCGACAACGGAGGAGGAGG+AGG 0.476647 5.2:-49785674 MS.gene036020:CDS
AGTGGTAGTGTTACTGTGAT+TGG 0.477368 5.2:+49785897 None:intergenic
ACATTAGTCGAGGAGGAAGT+AGG 0.480496 5.2:-49784890 MS.gene036020:CDS
TATCATGGAAGGGGCCCAAT+GGG 0.484349 5.2:-49785272 MS.gene036020:CDS
GACAACGGAGGAGGAGGAGG+AGG 0.484502 5.2:-49785671 MS.gene036020:CDS
GAGCTTTGTTCCTAACTCCT+TGG 0.485022 5.2:+49784916 None:intergenic
CACAAACTCTGCCTTCTCAC+TGG 0.485867 5.2:-49785436 MS.gene036020:CDS
TGGCTCAAGTGATATTGATT+CGG 0.487459 5.2:-49785564 MS.gene036020:CDS
GCACCTCCTTATGGCGGCAG+CGG 0.487716 5.2:-49785620 MS.gene036020:CDS
ATCGCGAAAAGAAGGCCTGC+CGG 0.491290 5.2:-49785227 MS.gene036020:CDS
TGAAGTTGTGGAAGTCATCT+TGG 0.492730 5.2:+49785809 None:intergenic
TGAAGAAGAAGATGGATCCA+TGG 0.495037 5.2:-49785716 MS.gene036020:CDS
TCACTTTCATCGCGAAAAGA+AGG 0.496428 5.2:-49785235 MS.gene036020:CDS
TATTGGGTTTATTTAACGAT+GGG 0.498402 5.2:-49784586 MS.gene036020:CDS
CCTCCGCTGCCGCCATAAGG+AGG 0.504163 5.2:+49785617 None:intergenic
CTCAAATTCGACAACGGAGG+AGG 0.505265 5.2:-49785680 MS.gene036020:CDS
AACGGGTGTGATTTCATCGT+TGG 0.506714 5.2:+49785774 None:intergenic
AGGCTGAGAGTATGTCTGTT+TGG 0.507765 5.2:+49785407 None:intergenic
CTGCTAAACGGCACCGATTG+TGG 0.507905 5.2:-49785463 MS.gene036020:CDS
GCCGTTTAGCAGAGTTTGGA+GGG 0.509680 5.2:+49785474 None:intergenic
TGGGTTTCCTATGAATAAAT+GGG 0.510723 5.2:-49784786 MS.gene036020:CDS
TTGAATGAGTGAAGCCCATT+GGG 0.514305 5.2:+49785258 None:intergenic
AGTGATATTGATTCGGCTCA+AGG 0.514796 5.2:-49785557 MS.gene036020:CDS
CACAAACAAGAGTCACCATC+TGG 0.516410 5.2:-49785584 MS.gene036020:CDS
TGCCGTTTAGCAGAGTTTGG+AGG 0.517244 5.2:+49785473 None:intergenic
TCTTCGTTGAAGCTTGTTCG+CGG 0.517579 5.2:-49785025 MS.gene036020:CDS
GAGTTTGTGGTGACCACAAT+CGG 0.519040 5.2:+49785450 None:intergenic
GTCAAGGAGAGGGGACCAAA+TGG 0.519529 5.2:+49785852 None:intergenic
TTGGGTGTGGAAGGGTTCAA+AGG 0.525480 5.2:-49784650 MS.gene036020:CDS
TGTGATTTCATCGTTGGTGA+GGG 0.527401 5.2:+49785780 None:intergenic
ATAACAACTTTGCTTGACAA+TGG 0.528206 5.2:+49784606 None:intergenic
ACAAAGCCTGCATCGTTGAT+GGG 0.528462 5.2:+49784866 None:intergenic
TGAAAGAAGGGTTCACATAG+TGG 0.529945 5.2:-49785302 MS.gene036020:CDS
GTAGGGCCCATCAACGATGC+AGG 0.535058 5.2:-49784872 MS.gene036020:CDS
TGAGTTGGACATGTCTCCCA+TGG 0.535777 5.2:+49785699 None:intergenic
TAAATGGGCTAGGAGTTTAG+TGG 0.535874 5.2:-49784771 MS.gene036020:CDS
AAAGGAGTTAACATAAGCTA+TGG 0.536826 5.2:-49784632 MS.gene036020:CDS
TCTTCCAGTTTCTTGAACAG+TGG 0.536983 5.2:+49785132 None:intergenic
TTATTGGGTTTATTTAACGA+TGG 0.539610 5.2:-49784587 MS.gene036020:CDS
AGCGATGTATGACTCGTTCG+AGG 0.539838 5.2:-49784810 MS.gene036020:CDS
GCCCTCCAAACTCTGCTAAA+CGG 0.540807 5.2:-49785475 MS.gene036020:CDS
GAGGAGGAGGATGACAGAAA+GGG 0.544247 5.2:-49785655 MS.gene036020:CDS
GTGGAAGTCATCTTGGTTGG+TGG 0.544732 5.2:+49785816 None:intergenic
AGTTTCTTGAACAGTGGCAA+AGG 0.546696 5.2:+49785138 None:intergenic
AAATCTAGATAACAAGGTCG+TGG 0.550244 5.2:-49785746 MS.gene036020:CDS
TTCCTATGAATAAATGGGCT+AGG 0.550588 5.2:-49784781 MS.gene036020:CDS
GAAGAAGAAGATGGATCCAT+GGG 0.550649 5.2:-49785715 MS.gene036020:CDS
GTGAAGAGGAGGAGCAAGAG+AGG 0.551124 5.2:-49784691 MS.gene036020:CDS
TCTATTGCTTCATTCTTGAA+CGG 0.552156 5.2:-49784941 MS.gene036020:CDS
CTCCATGTTGGTGCCGTGAG+TGG 0.552588 5.2:+49785522 None:intergenic
GAGGAAGATGAAGAAGAAGA+TGG 0.554434 5.2:-49785724 MS.gene036020:CDS
TTCATTCTTGAACGGTGCCA+AGG 0.558389 5.2:-49784933 MS.gene036020:CDS
TTTGGTGCGGTCCAGTGAGA+AGG 0.559073 5.2:+49785425 None:intergenic
CATTAGTCGAGGAGGAAGTA+GGG 0.559643 5.2:-49784889 MS.gene036020:CDS
GTGTGATTTCATCGTTGGTG+AGG 0.561242 5.2:+49785779 None:intergenic
AGAGTTGGGAAACAATAAGT+TGG 0.563779 5.2:-49784552 MS.gene036020:CDS
GACTTAGTGTCCTCCACTCA+CGG 0.564053 5.2:-49785535 MS.gene036020:CDS
ATTTAACGATGGGTATAGAG+TGG 0.564807 5.2:-49784576 MS.gene036020:CDS
TATTGACATAGACATGATCA+TGG 0.565364 5.2:-49785947 MS.gene036020:CDS
AAGAAATCCAAGTCAAGGAG+AGG 0.565976 5.2:+49785841 None:intergenic
AGCTGTTACTCATGAAAGAA+GGG 0.566179 5.2:-49785314 MS.gene036020:CDS
TGGAGAATTCTAGAAAATCT+GGG 0.566834 5.2:+49785917 None:intergenic
GTGGCCCAGTTGTACAAGAC+TGG 0.567811 5.2:-49784713 MS.gene036020:CDS
AAATTCGACAACGGAGGAGG+AGG 0.568207 5.2:-49785677 MS.gene036020:CDS
AATGGTGTCGTCATCAGAAG+TGG 0.570203 5.2:+49785870 None:intergenic
CTACATTGATGAAAAGTGAA+TGG 0.571536 5.2:+49785076 None:intergenic
TTTGCCACATCTTAGTTACC+GGG 0.572604 5.2:-49784972 MS.gene036020:CDS
GCAAGAGAGGTTCTCTTGGG+GGG 0.573233 5.2:-49784678 MS.gene036020:CDS
GTTGTGGAAGTCATCTTGGT+TGG 0.573299 5.2:+49785813 None:intergenic
GTGGACTTTGATATCATGGA+AGG 0.574432 5.2:-49785283 MS.gene036020:CDS
AAGCAATAGAATCTGAAGCC+CGG 0.574832 5.2:+49784954 None:intergenic
ATTGAATGAGTGAAGCCCAT+TGG 0.575421 5.2:+49785257 None:intergenic
CATGTCTTGAAGAAGCTGAA+AGG 0.576740 5.2:+49785387 None:intergenic
ATGAGTAACAGCTTCAAGGA+TGG 0.578715 5.2:+49785324 None:intergenic
AAATGAGCAAACTTGACGTA+AGG 0.579384 5.2:+49785361 None:intergenic
CCACTGAGCCCATTATTCGT+GGG 0.580098 5.2:+49784732 None:intergenic
GGACTTTGATATCATGGAAG+GGG 0.580763 5.2:-49785281 MS.gene036020:CDS
ATATCATGGAAGGGGCCCAA+TGG 0.582076 5.2:-49785273 MS.gene036020:CDS
AGAAACAAAGAACGTGGCAA+TGG 0.585187 5.2:-49785175 MS.gene036020:CDS
CTCCACTCACGGCACCAACA+TGG 0.585629 5.2:-49785524 MS.gene036020:CDS
GTGATGCGAAGATGTGGGCC+CGG 0.587438 5.2:+49785208 None:intergenic
GTTATCTAGATTTGGAGCAA+CGG 0.590909 5.2:+49785756 None:intergenic
CTGTTCAAGAAACTGGAAGA+AGG 0.593746 5.2:-49785129 MS.gene036020:CDS
GTTGTACAAGACTGGTGAAG+AGG 0.596068 5.2:-49784705 MS.gene036020:CDS
GTTGAAGCTTGTTCGCGGAG+AGG 0.596988 5.2:-49785020 MS.gene036020:CDS
GTACAAGACTGGTGAAGAGG+AGG 0.599329 5.2:-49784702 MS.gene036020:CDS
TCAATATCACTTGAGCCAGA+TGG 0.599918 5.2:+49785569 None:intergenic
ATGGGCTAGGAGTTTAGTGG+AGG 0.599983 5.2:-49784768 MS.gene036020:CDS
CCATAAGGAGGTGCACTAGA+CGG 0.601550 5.2:+49785629 None:intergenic
TAGCAGAGTTTGGAGGGCGT+CGG 0.602737 5.2:+49785480 None:intergenic
GAGCAAGAGAGGTTCTCTTG+GGG 0.606683 5.2:-49784680 MS.gene036020:CDS
AATGCAGTGATGCGAAGATG+TGG 0.609707 5.2:+49785202 None:intergenic
CATGTTGGTGCCGTGAGTGG+AGG 0.611646 5.2:+49785525 None:intergenic
TGGACTTTGATATCATGGAA+GGG 0.613948 5.2:-49785282 MS.gene036020:CDS
GTCATCAGAAGTGGGTGGAG+TGG 0.617810 5.2:+49785879 None:intergenic
CGCAGCGAGTCTCTCCATGT+TGG 0.618231 5.2:+49785510 None:intergenic
TGCTCCAAATCTAGATAACA+AGG 0.618396 5.2:-49785752 MS.gene036020:CDS
GAACATGGAGATTCATGACA+TGG 0.620847 5.2:-49785971 MS.gene036020:CDS
ATTGTATATGATCATGAACA+TGG 0.621187 5.2:-49785986 None:intergenic
TGAGGGAATCAATGAAGTTG+TGG 0.623812 5.2:+49785797 None:intergenic
TGGTGAAGAAATCCAAGTCA+AGG 0.627017 5.2:+49785836 None:intergenic
TTCACCAGTCTTGTACAACT+GGG 0.634954 5.2:+49784709 None:intergenic
AGAAATCCAAGTCAAGGAGA+GGG 0.637230 5.2:+49785842 None:intergenic
AAAAGTGAATGGTTGTCCAA+CGG 0.637307 5.2:+49785087 None:intergenic
TGTTAGGTTGGAAATCAAGA+CGG 0.641566 5.2:-49784529 MS.gene036020:CDS
TCTAGATAACAAGGTCGTGG+AGG 0.643866 5.2:-49785743 MS.gene036020:CDS
AGCAAGAGAGGTTCTCTTGG+GGG 0.646650 5.2:-49784679 MS.gene036020:CDS
ATGGTGTCGTCATCAGAAGT+GGG 0.650040 5.2:+49785871 None:intergenic
GAAATCCAAGTCAAGGAGAG+GGG 0.653641 5.2:+49785843 None:intergenic
GTGTCGTCATCAGAAGTGGG+TGG 0.657852 5.2:+49785874 None:intergenic
GAAGCCCGGTAACTAAGATG+TGG 0.661574 5.2:+49784968 None:intergenic
GCTCGTGACATTAGTCGAGG+AGG 0.670792 5.2:-49784897 MS.gene036020:CDS
CCCACGAATAATGGGCTCAG+TGG 0.676277 5.2:-49784732 MS.gene036020:CDS
AAAGCTCGTGACATTAGTCG+AGG 0.678929 5.2:-49784900 MS.gene036020:CDS
GAGAGTATGTCTGTTTGGTG+CGG 0.684249 5.2:+49785412 None:intergenic
ATGCAGTGATGCGAAGATGT+GGG 0.688648 5.2:+49785203 None:intergenic
GTCCAACTCAAATTCGACAA+CGG 0.690922 5.2:-49785686 MS.gene036020:CDS
TAAGGAGGTGCACTAGACGG+AGG 0.697542 5.2:+49785632 None:intergenic
TCTAGTGCACCTCCTTATGG+CGG 0.711985 5.2:-49785626 MS.gene036020:CDS
CAACTCAAATTCGACAACGG+AGG 0.712986 5.2:-49785683 MS.gene036020:CDS
TTGTCTAGAAACAAAGAACG+TGG 0.726054 5.2:-49785181 MS.gene036020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TATTGGGTTTATTTAACGAT+GGG - chr5.2:49785868-49785887 MS.gene036020:CDS 25.0%
! TTATTGGGTTTATTTAACGA+TGG - chr5.2:49785867-49785886 MS.gene036020:CDS 25.0%
AAAGGAGTTAACATAAGCTA+TGG - chr5.2:49785822-49785841 MS.gene036020:CDS 30.0%
ATAACAACTTTGCTTGACAA+TGG + chr5.2:49785851-49785870 None:intergenic 30.0%
CTACATTGATGAAAAGTGAA+TGG + chr5.2:49785381-49785400 None:intergenic 30.0%
TATTGACATAGACATGATCA+TGG - chr5.2:49784507-49784526 MS.gene036020:CDS 30.0%
TCTATTGCTTCATTCTTGAA+CGG - chr5.2:49785513-49785532 MS.gene036020:CDS 30.0%
TGGGTTTCCTATGAATAAAT+GGG - chr5.2:49785668-49785687 MS.gene036020:CDS 30.0%
TTGTCAAGCAAAGTTGTTAT+TGG - chr5.2:49785851-49785870 MS.gene036020:CDS 30.0%
! CACTTTTCATCAATGTAGAT+TGG - chr5.2:49785383-49785402 MS.gene036020:CDS 30.0%
! TGGAGAATTCTAGAAAATCT+GGG + chr5.2:49784540-49784559 None:intergenic 30.0%
! TGTCAAGCAAAGTTGTTATT+GGG - chr5.2:49785852-49785871 MS.gene036020:CDS 30.0%
! TTGGAGAATTCTAGAAAATC+TGG + chr5.2:49784541-49784560 None:intergenic 30.0%
!!! TTAGTGGAGGAAGTATTTTT+AGG - chr5.2:49785699-49785718 MS.gene036020:CDS 30.0%
AAAAGTGAATGGTTGTCCAA+CGG + chr5.2:49785370-49785389 None:intergenic 35.0%
AAATCTAGATAACAAGGTCG+TGG - chr5.2:49784708-49784727 MS.gene036020:CDS 35.0%
AAATGAGCAAACTTGACGTA+AGG + chr5.2:49785096-49785115 None:intergenic 35.0%
AAGCTGTTACTCATGAAAGA+AGG - chr5.2:49785139-49785158 MS.gene036020:CDS 35.0%
AGAGTTGGGAAACAATAAGT+TGG - chr5.2:49785902-49785921 MS.gene036020:CDS 35.0%
AGCTGTTACTCATGAAAGAA+GGG - chr5.2:49785140-49785159 MS.gene036020:CDS 35.0%
ATTTAACGATGGGTATAGAG+TGG - chr5.2:49785878-49785897 MS.gene036020:CDS 35.0%
ATTTGCCACATCTTAGTTAC+CGG - chr5.2:49785481-49785500 MS.gene036020:CDS 35.0%
CTGGGTTTCCTATGAATAAA+TGG - chr5.2:49785667-49785686 MS.gene036020:CDS 35.0%
TGCTCCAAATCTAGATAACA+AGG - chr5.2:49784702-49784721 MS.gene036020:CDS 35.0%
TGGACTTTGATATCATGGAA+GGG - chr5.2:49785172-49785191 MS.gene036020:CDS 35.0%
TTGTCTAGAAACAAAGAACG+TGG - chr5.2:49785273-49785292 MS.gene036020:CDS 35.0%
TTTCATGAGTAACAGCTTCA+AGG + chr5.2:49785137-49785156 None:intergenic 35.0%
! ACGACCTTGTTATCTAGATT+TGG + chr5.2:49784709-49784728 None:intergenic 35.0%
! GTTATCTAGATTTGGAGCAA+CGG + chr5.2:49784701-49784720 None:intergenic 35.0%
! TGGCTCAAGTGATATTGATT+CGG - chr5.2:49784890-49784909 MS.gene036020:CDS 35.0%
! TTATCTAGATTTGGAGCAAC+GGG + chr5.2:49784700-49784719 None:intergenic 35.0%
! TTCCTATGAATAAATGGGCT+AGG - chr5.2:49785673-49785692 MS.gene036020:CDS 35.0%
!! ACAATAAGTTGGTGTTAGGT+TGG - chr5.2:49785913-49785932 MS.gene036020:CDS 35.0%
!! ATTTTTAGGCCCACGAATAA+TGG - chr5.2:49785713-49785732 MS.gene036020:CDS 35.0%
!! CATAGTGGACTTTGATATCA+TGG - chr5.2:49785167-49785186 MS.gene036020:CDS 35.0%
!! GGAAACAATAAGTTGGTGTT+AGG - chr5.2:49785909-49785928 MS.gene036020:CDS 35.0%
!! TGTTAGGTTGGAAATCAAGA+CGG - chr5.2:49785925-49785944 MS.gene036020:CDS 35.0%
!! TTTTTAGGCCCACGAATAAT+GGG - chr5.2:49785714-49785733 MS.gene036020:CDS 35.0%
AAGAAATCCAAGTCAAGGAG+AGG + chr5.2:49784616-49784635 None:intergenic 40.0%
AGAAACAAAGAACGTGGCAA+TGG - chr5.2:49785279-49785298 MS.gene036020:CDS 40.0%
AGAAATCCAAGTCAAGGAGA+GGG + chr5.2:49784615-49784634 None:intergenic 40.0%
AGTTTCTTGAACAGTGGCAA+AGG + chr5.2:49785319-49785338 None:intergenic 40.0%
ATGAGTAACAGCTTCAAGGA+TGG + chr5.2:49785133-49785152 None:intergenic 40.0%
ATTGAATGAGTGAAGCCCAT+TGG + chr5.2:49785200-49785219 None:intergenic 40.0%
CATGTCTTGAAGAAGCTGAA+AGG + chr5.2:49785070-49785089 None:intergenic 40.0%
CTCCTAGCCCATTTATTCAT+AGG + chr5.2:49785678-49785697 None:intergenic 40.0%
CTGTTCAAGAAACTGGAAGA+AGG - chr5.2:49785325-49785344 MS.gene036020:CDS 40.0%
GAACATGGAGATTCATGACA+TGG - chr5.2:49784483-49784502 MS.gene036020:CDS 40.0%
GAAGAAGAAGATGGATCCAT+GGG - chr5.2:49784739-49784758 MS.gene036020:CDS 40.0%
GAGGAAGATGAAGAAGAAGA+TGG - chr5.2:49784730-49784749 MS.gene036020:CDS 40.0%
GGACTTTGATATCATGGAAG+GGG - chr5.2:49785173-49785192 MS.gene036020:CDS 40.0%
GTCCAACTCAAATTCGACAA+CGG - chr5.2:49784768-49784787 MS.gene036020:CDS 40.0%
GTGGACTTTGATATCATGGA+AGG - chr5.2:49785171-49785190 MS.gene036020:CDS 40.0%
TCAATATCACTTGAGCCAGA+TGG + chr5.2:49784888-49784907 None:intergenic 40.0%
TCACTTTCATCGCGAAAAGA+AGG - chr5.2:49785219-49785238 MS.gene036020:CDS 40.0%
TCTTCCAGTTTCTTGAACAG+TGG + chr5.2:49785325-49785344 None:intergenic 40.0%
TGAAAGAAGGGTTCACATAG+TGG - chr5.2:49785152-49785171 MS.gene036020:CDS 40.0%
TGAAGAAGAAGATGGATCCA+TGG - chr5.2:49784738-49784757 MS.gene036020:CDS 40.0%
TGAAGTTGTGGAAGTCATCT+TGG + chr5.2:49784648-49784667 None:intergenic 40.0%
TGAGGGAATCAATGAAGTTG+TGG + chr5.2:49784660-49784679 None:intergenic 40.0%
TGGTGAAGAAATCCAAGTCA+AGG + chr5.2:49784621-49784640 None:intergenic 40.0%
TTGAATGAGTGAAGCCCATT+GGG + chr5.2:49785199-49785218 None:intergenic 40.0%
TTTGCCACATCTTAGTTACC+GGG - chr5.2:49785482-49785501 MS.gene036020:CDS 40.0%
TTTGCCACTGTTCAAGAAAC+TGG - chr5.2:49785318-49785337 MS.gene036020:CDS 40.0%
! AAGCAATAGAATCTGAAGCC+CGG + chr5.2:49785503-49785522 None:intergenic 40.0%
! ACTCTTGTTTGTGCCTGTTA+GGG + chr5.2:49784863-49784882 None:intergenic 40.0%
! AGTGGTAGTGTTACTGTGAT+TGG + chr5.2:49784560-49784579 None:intergenic 40.0%
! CGTCAAGTTTGCTCATTTCA+CGG - chr5.2:49785098-49785117 MS.gene036020:CDS 40.0%
! TGTGATTTCATCGTTGGTGA+GGG + chr5.2:49784677-49784696 None:intergenic 40.0%
! TTCACCAGTCTTGTACAACT+GGG + chr5.2:49785748-49785767 None:intergenic 40.0%
!! AGTGATATTGATTCGGCTCA+AGG - chr5.2:49784897-49784916 MS.gene036020:CDS 40.0%
!! TAAATGGGCTAGGAGTTTAG+TGG - chr5.2:49785683-49785702 MS.gene036020:CDS 40.0%
AAAGCTCGTGACATTAGTCG+AGG - chr5.2:49785554-49785573 MS.gene036020:CDS 45.0%
AACGGGTGTGATTTCATCGT+TGG + chr5.2:49784683-49784702 None:intergenic 45.0%
AATGCAGTGATGCGAAGATG+TGG + chr5.2:49785255-49785274 None:intergenic 45.0%
ACAAAGCCTGCATCGTTGAT+GGG + chr5.2:49785591-49785610 None:intergenic 45.0%
ACATTAGTCGAGGAGGAAGT+AGG - chr5.2:49785564-49785583 MS.gene036020:CDS 45.0%
ATGCAGTGATGCGAAGATGT+GGG + chr5.2:49785254-49785273 None:intergenic 45.0%
CAACTCAAATTCGACAACGG+AGG - chr5.2:49784771-49784790 MS.gene036020:CDS 45.0%
CACAAACAAGAGTCACCATC+TGG - chr5.2:49784870-49784889 MS.gene036020:CDS 45.0%
CATTAGTCGAGGAGGAAGTA+GGG - chr5.2:49785565-49785584 MS.gene036020:CDS 45.0%
CTCCGTTGTCGAATTTGAGT+TGG + chr5.2:49784773-49784792 None:intergenic 45.0%
GAAATCCAAGTCAAGGAGAG+GGG + chr5.2:49784614-49784633 None:intergenic 45.0%
GAGTTTGTGGTGACCACAAT+CGG + chr5.2:49785007-49785026 None:intergenic 45.0%
GGGTATAGAGTGGAAGAGTT+GGG - chr5.2:49785888-49785907 MS.gene036020:CDS 45.0%
GTGTGATTTCATCGTTGGTG+AGG + chr5.2:49784678-49784697 None:intergenic 45.0%
GTTGTACAAGACTGGTGAAG+AGG - chr5.2:49785749-49785768 MS.gene036020:CDS 45.0%
GTTGTGGAAGTCATCTTGGT+TGG + chr5.2:49784644-49784663 None:intergenic 45.0%
TAACAGCTTCAAGGATGGCT+TGG + chr5.2:49785128-49785147 None:intergenic 45.0%
TCTAGATAACAAGGTCGTGG+AGG - chr5.2:49784711-49784730 MS.gene036020:CDS 45.0%
TGGGTATAGAGTGGAAGAGT+TGG - chr5.2:49785887-49785906 MS.gene036020:CDS 45.0%
! AGGCTGAGAGTATGTCTGTT+TGG + chr5.2:49785050-49785069 None:intergenic 45.0%
! AGGCTTTGTGGGTTTGTTCA+TGG - chr5.2:49785602-49785621 MS.gene036020:CDS 45.0%
! ATCAACGATGCAGGCTTTGT+GGG - chr5.2:49785591-49785610 MS.gene036020:CDS 45.0%
! CTTCACCAGTCTTGTACAAC+TGG + chr5.2:49785749-49785768 None:intergenic 45.0%
! CTTCTGATGACGACACCATT+TGG - chr5.2:49784587-49784606 MS.gene036020:CDS 45.0%
! GACTCTTGTTTGTGCCTGTT+AGG + chr5.2:49784864-49784883 None:intergenic 45.0%
! GAGAGTATGTCTGTTTGGTG+CGG + chr5.2:49785045-49785064 None:intergenic 45.0%
! TCTTCGTTGAAGCTTGTTCG+CGG - chr5.2:49785429-49785448 MS.gene036020:CDS 45.0%
! TTCATTCTTGAACGGTGCCA+AGG - chr5.2:49785521-49785540 MS.gene036020:CDS 45.0%
!! AATGGTGTCGTCATCAGAAG+TGG + chr5.2:49784587-49784606 None:intergenic 45.0%
!! ATGGTGTCGTCATCAGAAGT+GGG + chr5.2:49784586-49784605 None:intergenic 45.0%
!! GAGCTTTGTTCCTAACTCCT+TGG + chr5.2:49785541-49785560 None:intergenic 45.0%
AAATTCGACAACGGAGGAGG+AGG - chr5.2:49784777-49784796 MS.gene036020:CDS 50.0%
AGCAAGAGAGGTTCTCTTGG+GGG - chr5.2:49785775-49785794 MS.gene036020:CDS 50.0%
AGCGATGTATGACTCGTTCG+AGG - chr5.2:49785644-49785663 MS.gene036020:CDS 50.0%
AGGAGCAAGAGAGGTTCTCT+TGG - chr5.2:49785772-49785791 MS.gene036020:CDS 50.0%
ATATCATGGAAGGGGCCCAA+TGG - chr5.2:49785181-49785200 MS.gene036020:CDS 50.0%
ATGTATGACTCGTTCGAGGC+TGG - chr5.2:49785648-49785667 MS.gene036020:CDS 50.0%
CACAAACTCTGCCTTCTCAC+TGG - chr5.2:49785018-49785037 MS.gene036020:CDS 50.0%
CACAAAGCCTGCATCGTTGA+TGG + chr5.2:49785592-49785611 None:intergenic 50.0%
CAGTGAGAAGGCAGAGTTTG+TGG + chr5.2:49785020-49785039 None:intergenic 50.0%
CATCAACGATGCAGGCTTTG+TGG - chr5.2:49785590-49785609 MS.gene036020:CDS 50.0%
CCACTGAGCCCATTATTCGT+GGG + chr5.2:49785725-49785744 None:intergenic 50.0%
CTCAAATTCGACAACGGAGG+AGG - chr5.2:49784774-49784793 MS.gene036020:CDS 50.0%
GAAGCCCGGTAACTAAGATG+TGG + chr5.2:49785489-49785508 None:intergenic 50.0%
GACTTAGTGTCCTCCACTCA+CGG - chr5.2:49784919-49784938 MS.gene036020:CDS 50.0%
GAGCAAGAGAGGTTCTCTTG+GGG - chr5.2:49785774-49785793 MS.gene036020:CDS 50.0%
GAGGAGGAGGATGACAGAAA+GGG - chr5.2:49784799-49784818 MS.gene036020:CDS 50.0%
GCCCTCCAAACTCTGCTAAA+CGG - chr5.2:49784979-49784998 MS.gene036020:CDS 50.0%
GCCGTTTAGCAGAGTTTGGA+GGG + chr5.2:49784983-49785002 None:intergenic 50.0%
GGAGCAAGAGAGGTTCTCTT+GGG - chr5.2:49785773-49785792 MS.gene036020:CDS 50.0%
GTACAAGACTGGTGAAGAGG+AGG - chr5.2:49785752-49785771 MS.gene036020:CDS 50.0%
GTGGAAGTCATCTTGGTTGG+TGG + chr5.2:49784641-49784660 None:intergenic 50.0%
TATCATGGAAGGGGCCCAAT+GGG - chr5.2:49785182-49785201 MS.gene036020:CDS 50.0%
TCTAGTGCACCTCCTTATGG+CGG - chr5.2:49784828-49784847 MS.gene036020:CDS 50.0%
TGTATGACTCGTTCGAGGCT+GGG - chr5.2:49785649-49785668 MS.gene036020:CDS 50.0%
TTGGGTGTGGAAGGGTTCAA+AGG - chr5.2:49785804-49785823 MS.gene036020:CDS 50.0%
! CCATAAGGAGGTGCACTAGA+CGG + chr5.2:49784828-49784847 None:intergenic 50.0%
! GGCTGCTTTCTGCTTCTGTT+TGG - chr5.2:49785946-49785965 MS.gene036020:CDS 50.0%
! TGAGTTGGACATGTCTCCCA+TGG + chr5.2:49784758-49784777 None:intergenic 50.0%
! TGCCGTTTAGCAGAGTTTGG+AGG + chr5.2:49784984-49785003 None:intergenic 50.0%
! TTGAACGGTGCCAAGGAGTT+AGG - chr5.2:49785528-49785547 MS.gene036020:CDS 50.0%
!! ACAGCTTTTGCTGCTTCCGT+TGG - chr5.2:49785351-49785370 MS.gene036020:CDS 50.0%
!! ATGGGCTAGGAGTTTAGTGG+AGG - chr5.2:49785686-49785705 MS.gene036020:CDS 50.0%
ATCGCGAAAAGAAGGCCTGC+CGG - chr5.2:49785227-49785246 MS.gene036020:CDS 55.0%
CCGTCTAGTGCACCTCCTTA+TGG - chr5.2:49784825-49784844 MS.gene036020:CDS 55.0%
GCAAGAGAGGTTCTCTTGGG+GGG - chr5.2:49785776-49785795 MS.gene036020:CDS 55.0%
GCCACTGAGCCCATTATTCG+TGG + chr5.2:49785726-49785745 None:intergenic 55.0%
GCTCGTGACATTAGTCGAGG+AGG - chr5.2:49785557-49785576 MS.gene036020:CDS 55.0%
GGAGGAGGAGGATGACAGAA+AGG - chr5.2:49784798-49784817 MS.gene036020:CDS 55.0%
GTCAAGGAGAGGGGACCAAA+TGG + chr5.2:49784605-49784624 None:intergenic 55.0%
GTCATCAGAAGTGGGTGGAG+TGG + chr5.2:49784578-49784597 None:intergenic 55.0%
GTGAAGAGGAGGAGCAAGAG+AGG - chr5.2:49785763-49785782 MS.gene036020:CDS 55.0%
GTGGCCCAGTTGTACAAGAC+TGG - chr5.2:49785741-49785760 MS.gene036020:CDS 55.0%
GTGTCGTCATCAGAAGTGGG+TGG + chr5.2:49784583-49784602 None:intergenic 55.0%
TTCTCTTGGGGGGAGTGGTT+GGG - chr5.2:49785786-49785805 MS.gene036020:CDS 55.0%
TTGGTCCCCTCTCCTTGACT+TGG - chr5.2:49784606-49784625 MS.gene036020:CDS 55.0%
! GTTGAAGCTTGTTCGCGGAG+AGG - chr5.2:49785434-49785453 MS.gene036020:CDS 55.0%
! TAAGGAGGTGCACTAGACGG+AGG + chr5.2:49784825-49784844 None:intergenic 55.0%
! TAGCAGAGTTTGGAGGGCGT+CGG + chr5.2:49784977-49784996 None:intergenic 55.0%
! TTTGGTGCGGTCCAGTGAGA+AGG + chr5.2:49785032-49785051 None:intergenic 55.0%
!! CCCACGAATAATGGGCTCAG+TGG - chr5.2:49785722-49785741 MS.gene036020:CDS 55.0%
!! CGGTGCCGTTTAGCAGAGTT+TGG + chr5.2:49784987-49785006 None:intergenic 55.0%
!! CTGCTAAACGGCACCGATTG+TGG - chr5.2:49784991-49785010 MS.gene036020:CDS 55.0%
AGAGGTTCTCTTGGGGGGAG+TGG - chr5.2:49785781-49785800 MS.gene036020:CDS 60.0%
CGCAGCGAGTCTCTCCATGT+TGG + chr5.2:49784947-49784966 None:intergenic 60.0%
CTCCACTCACGGCACCAACA+TGG - chr5.2:49784930-49784949 MS.gene036020:CDS 60.0%
GCTTGTTCGCGGAGAGGCTT+TGG - chr5.2:49785440-49785459 MS.gene036020:CDS 60.0%
GGGAGTGGTTGGGTGTGGAA+GGG - chr5.2:49785796-49785815 MS.gene036020:CDS 60.0%
GTAGGGCCCATCAACGATGC+AGG - chr5.2:49785582-49785601 MS.gene036020:CDS 60.0%
GTGATGCGAAGATGTGGGCC+CGG + chr5.2:49785249-49785268 None:intergenic 60.0%
GTTCTCTTGGGGGGAGTGGT+TGG - chr5.2:49785785-49785804 MS.gene036020:CDS 60.0%
TCGCGAAAAGAAGGCCTGCC+GGG - chr5.2:49785228-49785247 MS.gene036020:CDS 60.0%
TTCGACAACGGAGGAGGAGG+AGG - chr5.2:49784780-49784799 MS.gene036020:CDS 60.0%
!! CATGTTGGTGCCGTGAGTGG+AGG + chr5.2:49784932-49784951 None:intergenic 60.0%
!! CTCCATGTTGGTGCCGTGAG+TGG + chr5.2:49784935-49784954 None:intergenic 60.0%
AACGGAGGAGGAGGAGGAGG+AGG - chr5.2:49784786-49784805 MS.gene036020:CDS 65.0%
GACAACGGAGGAGGAGGAGG+AGG - chr5.2:49784783-49784802 MS.gene036020:CDS 65.0%
GCACCTCCTTATGGCGGCAG+CGG - chr5.2:49784834-49784853 MS.gene036020:CDS 65.0%
GGGGAGTGGTTGGGTGTGGA+AGG - chr5.2:49785795-49785814 MS.gene036020:CDS 65.0%
TTGGGGGGAGTGGTTGGGTG+TGG - chr5.2:49785791-49785810 MS.gene036020:CDS 65.0%
CCTCCGCTGCCGCCATAAGG+AGG + chr5.2:49784840-49784859 None:intergenic 70.0%
CCTCCTTATGGCGGCAGCGG+AGG - chr5.2:49784837-49784856 MS.gene036020:CDS 70.0%
TGCGAAGATGTGGGCCCGGC+AGG + chr5.2:49785245-49785264 None:intergenic 70.0%
GCGGCAGCGGAGGCCCTAAC+AGG - chr5.2:49784847-49784866 MS.gene036020:CDS 75.0%
GGGCCTCCGCTGCCGCCATA+AGG + chr5.2:49784843-49784862 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 49784475 49786001 49784475 ID=MS.gene036020
chr5.2 mRNA 49784475 49786001 49784475 ID=MS.gene036020.t1;Parent=MS.gene036020
chr5.2 exon 49784475 49786001 49784475 ID=MS.gene036020.t1.exon1;Parent=MS.gene036020.t1
chr5.2 CDS 49784475 49786001 49784475 ID=cds.MS.gene036020.t1;Parent=MS.gene036020.t1
Gene Sequence

>MS.gene036020

ATGATCATGAACATGGAGATTCATGACATGGATATTGACATAGACATGATCATGGATGTTGTCCCAGATTTTCTAGAATTCTCCAATCACAGTAACACTACCACTCCACCCACTTCTGATGACGACACCATTTGGTCCCCTCTCCTTGACTTGGATTTCTTCACCACCAACCAAGATGACTTCCACAACTTCATTGATTCCCTCACCAACGATGAAATCACACCCGTTGCTCCAAATCTAGATAACAAGGTCGTGGAGGAAGATGAAGAAGAAGATGGATCCATGGGAGACATGTCCAACTCAAATTCGACAACGGAGGAGGAGGAGGAGGAGGATGACAGAAAGGGCCTCCGTCTAGTGCACCTCCTTATGGCGGCAGCGGAGGCCCTAACAGGCACAAACAAGAGTCACCATCTGGCTCAAGTGATATTGATTCGGCTCAAGGACTTAGTGTCCTCCACTCACGGCACCAACATGGAGAGACTCGCTGCGTATTTTACCGACGCCCTCCAAACTCTGCTAAACGGCACCGATTGTGGTCACCACAAACTCTGCCTTCTCACTGGACCGCACCAAACAGACATACTCTCAGCCTTTCAGCTTCTTCAAGACATGTCTCCTTACGTCAAGTTTGCTCATTTCACGGCAAACCAAGCCATCCTTGAAGCTGTTACTCATGAAAGAAGGGTTCACATAGTGGACTTTGATATCATGGAAGGGGCCCAATGGGCTTCACTCATTCAATCACTTTCATCGCGAAAAGAAGGCCTGCCGGGCCCACATCTTCGCATCACTGCATTGTCTAGAAACAAAGAACGTGGCAATGGACGATCAAGATCGTCCTTTGCCACTGTTCAAGAAACTGGAAGAAGGTTAACAGCTTTTGCTGCTTCCGTTGGACAACCATTCACTTTTCATCAATGTAGATTGGAATCAGACGAAACTTTTCGAACATCTTCGTTGAAGCTTGTTCGCGGAGAGGCTTTGGTGTTCAACTGTGTCATGCATTTGCCACATCTTAGTTACCGGGCTTCAGATTCTATTGCTTCATTCTTGAACGGTGCCAAGGAGTTAGGAACAAAGCTCGTGACATTAGTCGAGGAGGAAGTAGGGCCCATCAACGATGCAGGCTTTGTGGGTTTGTTCATGGATTCATTGCATCGTTATTCAGCGATGTATGACTCGTTCGAGGCTGGGTTTCCTATGAATAAATGGGCTAGGAGTTTAGTGGAGGAAGTATTTTTAGGCCCACGAATAATGGGCTCAGTGGCCCAGTTGTACAAGACTGGTGAAGAGGAGGAGCAAGAGAGGTTCTCTTGGGGGGAGTGGTTGGGTGTGGAAGGGTTCAAAGGAGTTAACATAAGCTATGGTAACCATTGTCAAGCAAAGTTGTTATTGGGTTTATTTAACGATGGGTATAGAGTGGAAGAGTTGGGAAACAATAAGTTGGTGTTAGGTTGGAAATCAAGACGGCTGCTTTCTGCTTCTGTTTGGACTTGTTTGTCAGAGATTGAATATGATTTTTAA
Protein sequence

>MS.gene036020.t1

MIMNMEIHDMDIDIDMIMDVVPDFLEFSNHSNTTTPPTSDDDTIWSPLLDLDFFTTNQDDFHNFIDSLTNDEITPVAPNLDNKVVEEDEEEDGSMGDMSNSNSTTEEEEEEDDRKGLRLVHLLMAAAEALTGTNKSHHLAQVILIRLKDLVSSTHGTNMERLAAYFTDALQTLLNGTDCGHHKLCLLTGPHQTDILSAFQLLQDMSPYVKFAHFTANQAILEAVTHERRVHIVDFDIMEGAQWASLIQSLSSRKEGLPGPHLRITALSRNKERGNGRSRSSFATVQETGRRLTAFAASVGQPFTFHQCRLESDETFRTSSLKLVRGEALVFNCVMHLPHLSYRASDSIASFLNGAKELGTKLVTLVEEEVGPINDAGFVGLFMDSLHRYSAMYDSFEAGFPMNKWARSLVEEVFLGPRIMGSVAQLYKTGEEEEQERFSWGEWLGVEGFKGVNISYGNHCQAKLLLGLFNDGYRVEELGNNKLVLGWKSRRLLSASVWTCLSEIEYDF