Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036036.t1 | XP_013468437.1 | 88.4 | 890 | 103 | 0 | 1 | 890 | 1 | 890 | 0.00E+00 | 1607.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036036.t1 | Q9SSE9 | 45.8 | 821 | 344 | 7 | 116 | 885 | 127 | 897 | 2.7e-203 | 710.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036036.t1 | A0A072VKD6 | 88.4 | 890 | 103 | 0 | 1 | 890 | 1 | 890 | 0.0e+00 | 1607.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene036036.t1 | TR | Jumonji |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036036.t1 | MTR_1g069565 | 93.034 | 890 | 62 | 0 | 1 | 890 | 1 | 890 | 0.0 | 1654 |
MS.gene036036.t1 | MTR_1g069565 | 86.378 | 947 | 72 | 3 | 1 | 890 | 1 | 947 | 0.0 | 1597 |
MS.gene036036.t1 | MTR_1g114150 | 79.284 | 782 | 115 | 6 | 119 | 890 | 315 | 1059 | 0.0 | 1271 |
MS.gene036036.t1 | MTR_1g114130 | 69.599 | 898 | 175 | 8 | 61 | 890 | 180 | 1047 | 0.0 | 1241 |
MS.gene036036.t1 | MTR_1g114070 | 69.542 | 765 | 188 | 5 | 124 | 888 | 212 | 931 | 0.0 | 1080 |
MS.gene036036.t1 | MTR_5g065200 | 67.629 | 797 | 189 | 7 | 99 | 883 | 97 | 836 | 0.0 | 1063 |
MS.gene036036.t1 | MTR_1g114150 | 77.039 | 662 | 105 | 6 | 119 | 770 | 315 | 939 | 0.0 | 1039 |
MS.gene036036.t1 | MTR_5g047620 | 69.265 | 680 | 186 | 9 | 207 | 882 | 138 | 798 | 0.0 | 939 |
MS.gene036036.t1 | MTR_0020s0100 | 64.103 | 663 | 182 | 11 | 207 | 864 | 80 | 691 | 0.0 | 828 |
MS.gene036036.t1 | MTR_7g117445 | 43.692 | 856 | 390 | 20 | 106 | 888 | 97 | 933 | 0.0 | 664 |
MS.gene036036.t1 | MTR_7g117445 | 43.868 | 848 | 384 | 20 | 106 | 880 | 97 | 925 | 0.0 | 662 |
MS.gene036036.t1 | MTR_7g117445 | 43.868 | 848 | 384 | 20 | 106 | 880 | 97 | 925 | 0.0 | 662 |
MS.gene036036.t1 | MTR_4g132540 | 47.122 | 747 | 334 | 15 | 144 | 879 | 168 | 864 | 0.0 | 640 |
MS.gene036036.t1 | MTR_2g024270 | 47.432 | 740 | 311 | 13 | 143 | 879 | 153 | 817 | 0.0 | 620 |
MS.gene036036.t1 | MTR_2g024140 | 45.357 | 743 | 310 | 13 | 143 | 879 | 33 | 685 | 0.0 | 592 |
MS.gene036036.t1 | MTR_7g117445 | 42.386 | 788 | 362 | 20 | 106 | 820 | 97 | 865 | 0.0 | 585 |
MS.gene036036.t1 | MTR_1g083120 | 36.835 | 752 | 405 | 17 | 143 | 880 | 197 | 892 | 3.44e-148 | 461 |
MS.gene036036.t1 | MTR_1g083120 | 36.835 | 752 | 405 | 17 | 143 | 880 | 214 | 909 | 3.79e-148 | 461 |
MS.gene036036.t1 | MTR_1g008060 | 45.506 | 534 | 254 | 11 | 140 | 669 | 866 | 1366 | 2.41e-132 | 435 |
MS.gene036036.t1 | MTR_1g008060 | 72.059 | 136 | 38 | 0 | 735 | 870 | 1551 | 1686 | 1.90e-58 | 219 |
MS.gene036036.t1 | MTR_1g008060 | 45.506 | 534 | 254 | 11 | 140 | 669 | 857 | 1357 | 2.64e-132 | 434 |
MS.gene036036.t1 | MTR_1g008060 | 72.059 | 136 | 38 | 0 | 735 | 870 | 1542 | 1677 | 1.98e-58 | 218 |
MS.gene036036.t1 | MTR_2g011630 | 34.275 | 779 | 448 | 15 | 144 | 884 | 207 | 959 | 7.95e-131 | 417 |
MS.gene036036.t1 | MTR_1g083120 | 36.508 | 693 | 370 | 17 | 144 | 822 | 198 | 834 | 3.52e-130 | 412 |
MS.gene036036.t1 | MTR_1g083120 | 35.642 | 693 | 376 | 14 | 144 | 822 | 198 | 834 | 4.09e-130 | 411 |
MS.gene036036.t1 | MTR_2g011630 | 34.626 | 696 | 393 | 13 | 226 | 884 | 45 | 715 | 1.26e-118 | 377 |
MS.gene036036.t1 | MTR_2g011630 | 34.626 | 696 | 393 | 13 | 226 | 884 | 77 | 747 | 2.93e-118 | 377 |
MS.gene036036.t1 | MTR_8g062940 | 50.000 | 398 | 161 | 6 | 113 | 510 | 8 | 367 | 2.33e-116 | 359 |
MS.gene036036.t1 | MTR_2g024240 | 53.086 | 324 | 103 | 3 | 521 | 844 | 114 | 388 | 6.41e-107 | 335 |
MS.gene036036.t1 | MTR_4g091520 | 37.077 | 561 | 296 | 14 | 367 | 880 | 727 | 1277 | 1.13e-97 | 333 |
MS.gene036036.t1 | MTR_4g091520 | 33.014 | 209 | 122 | 5 | 139 | 338 | 255 | 454 | 2.51e-27 | 120 |
MS.gene036036.t1 | MTR_8g013920 | 70.414 | 169 | 31 | 3 | 546 | 714 | 40 | 189 | 1.64e-61 | 207 |
MS.gene036036.t1 | MTR_4g091520 | 41.667 | 300 | 158 | 8 | 367 | 659 | 657 | 946 | 7.38e-60 | 222 |
MS.gene036036.t1 | MTR_4g091520 | 33.014 | 209 | 122 | 5 | 139 | 338 | 255 | 454 | 2.32e-27 | 120 |
MS.gene036036.t1 | MTR_4g091520 | 55.738 | 61 | 26 | 1 | 734 | 794 | 1062 | 1121 | 2.60e-12 | 71.6 |
MS.gene036036.t1 | MTR_4g091520 | 41.667 | 300 | 158 | 8 | 367 | 659 | 727 | 1016 | 7.83e-60 | 222 |
MS.gene036036.t1 | MTR_4g091520 | 33.971 | 209 | 120 | 6 | 139 | 338 | 255 | 454 | 2.41e-27 | 120 |
MS.gene036036.t1 | MTR_4g091520 | 55.738 | 61 | 26 | 1 | 734 | 794 | 1132 | 1191 | 2.09e-12 | 72.0 |
MS.gene036036.t1 | MTR_4g091520 | 41.667 | 300 | 158 | 8 | 367 | 659 | 692 | 981 | 8.28e-60 | 222 |
MS.gene036036.t1 | MTR_4g091520 | 33.014 | 209 | 122 | 5 | 139 | 338 | 255 | 454 | 2.14e-27 | 120 |
MS.gene036036.t1 | MTR_4g091520 | 55.738 | 61 | 26 | 1 | 734 | 794 | 1097 | 1156 | 2.34e-12 | 71.6 |
MS.gene036036.t1 | MTR_0295s0020 | 61.585 | 164 | 63 | 0 | 512 | 675 | 12 | 175 | 1.31e-59 | 201 |
MS.gene036036.t1 | MTR_8g465700 | 52.247 | 178 | 81 | 1 | 456 | 633 | 4 | 177 | 1.11e-55 | 194 |
MS.gene036036.t1 | MTR_8g465720 | 77.528 | 89 | 19 | 1 | 734 | 822 | 52 | 139 | 1.67e-42 | 152 |
MS.gene036036.t1 | MTR_3g080750 | 69.841 | 63 | 19 | 0 | 633 | 695 | 86 | 148 | 1.30e-20 | 89.7 |
MS.gene036036.t1 | MTR_6g051930 | 89.655 | 29 | 3 | 0 | 275 | 303 | 45 | 73 | 6.98e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036036.t1 | AT3G07610 | 43.231 | 916 | 410 | 10 | 27 | 885 | 35 | 897 | 0.0 | 711 |
MS.gene036036.t1 | AT3G07610 | 42.032 | 935 | 416 | 11 | 27 | 885 | 35 | 919 | 0.0 | 691 |
MS.gene036036.t1 | AT1G11950 | 48.988 | 741 | 308 | 13 | 144 | 879 | 193 | 868 | 0.0 | 688 |
MS.gene036036.t1 | AT1G11950 | 48.988 | 741 | 308 | 13 | 144 | 879 | 193 | 868 | 0.0 | 688 |
MS.gene036036.t1 | AT1G62310 | 49.108 | 729 | 313 | 12 | 144 | 868 | 209 | 883 | 0.0 | 680 |
MS.gene036036.t1 | AT4G00990 | 43.686 | 776 | 375 | 15 | 142 | 879 | 78 | 829 | 0.0 | 603 |
MS.gene036036.t1 | AT1G11950 | 46.736 | 674 | 289 | 13 | 144 | 812 | 193 | 801 | 0.0 | 585 |
MS.gene036036.t1 | AT4G00990 | 42.483 | 725 | 355 | 15 | 142 | 828 | 78 | 778 | 6.38e-179 | 536 |
MS.gene036036.t1 | AT4G00990 | 42.817 | 717 | 348 | 15 | 142 | 820 | 78 | 770 | 4.88e-178 | 534 |
MS.gene036036.t1 | AT3G07610 | 39.851 | 670 | 332 | 8 | 27 | 639 | 35 | 690 | 3.44e-152 | 466 |
MS.gene036036.t1 | AT1G09060 | 32.322 | 758 | 420 | 17 | 144 | 880 | 206 | 891 | 3.47e-116 | 377 |
MS.gene036036.t1 | AT1G09060 | 32.322 | 758 | 420 | 17 | 144 | 880 | 206 | 891 | 3.47e-116 | 377 |
MS.gene036036.t1 | AT1G09060 | 32.368 | 760 | 417 | 18 | 144 | 880 | 220 | 905 | 4.91e-116 | 377 |
MS.gene036036.t1 | AT1G09060 | 32.368 | 760 | 417 | 18 | 144 | 880 | 220 | 905 | 4.91e-116 | 377 |
MS.gene036036.t1 | AT4G21430 | 28.897 | 526 | 313 | 10 | 140 | 657 | 223 | 695 | 4.59e-59 | 218 |
MS.gene036036.t1 | AT4G21430 | 43.791 | 153 | 85 | 1 | 734 | 886 | 768 | 919 | 7.28e-35 | 144 |
Find 210 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGGTCATTGTTGGTTTC+TGG | 0.066287 | 1.4:+56282996 | None:intergenic |
TTTAAATATTCTTCCAATTT+AGG | 0.124269 | 1.4:+56279724 | None:intergenic |
AGTACATTGCTGACAATTAT+AGG | 0.182829 | 1.4:+56281853 | None:intergenic |
TGATAAAGAAAATAGTTTAT+TGG | 0.211724 | 1.4:-56279803 | MS.gene036036:CDS |
TTGCTCGTATGAAGCCTTTA+TGG | 0.217000 | 1.4:+56279900 | None:intergenic |
AATTTGCACCAATTCTTTAC+TGG | 0.236831 | 1.4:-56280906 | MS.gene036036:CDS |
GAGAGAGGATGTACCTAAAT+TGG | 0.270507 | 1.4:-56279737 | MS.gene036036:CDS |
GTCCTTATTGGTCTGTAATA+AGG | 0.273383 | 1.4:-56284073 | MS.gene036036:CDS |
TCTGCAGACTTGTGATTTAC+TGG | 0.286546 | 1.4:+56278102 | None:intergenic |
TTTCTGCCACGTTTCTTTGC+CGG | 0.291268 | 1.4:+56284467 | None:intergenic |
AGTGTTCGATTTGTGGAAAA+TGG | 0.293306 | 1.4:-56279874 | MS.gene036036:CDS |
TGAAGTGAAGCTGGATTCTA+AGG | 0.294563 | 1.4:-56280040 | MS.gene036036:CDS |
ACAGCATCCTGGACATTTCT+TGG | 0.294851 | 1.4:+56283165 | None:intergenic |
GATTGAAGATGTGTCCTTAT+TGG | 0.294904 | 1.4:-56284085 | MS.gene036036:CDS |
TCACAATCATCATCGGCTTT+TGG | 0.295247 | 1.4:+56282165 | None:intergenic |
CTTCGTGGTGGGAAGCTTCT+AGG | 0.295572 | 1.4:-56282363 | MS.gene036036:CDS |
CTCGCCTGGACTGGCTTAAT+TGG | 0.302310 | 1.4:-56280872 | MS.gene036036:CDS |
TGTTGCTGTTCAATGCATTC+AGG | 0.310113 | 1.4:+56284230 | None:intergenic |
TATGTTATACCTTCAGATTT+CGG | 0.328391 | 1.4:+56278623 | None:intergenic |
TAATTCATCTTCTTCCATAA+AGG | 0.328727 | 1.4:-56279914 | MS.gene036036:CDS |
GCAAAATAGTGTTCGATTTG+TGG | 0.335906 | 1.4:-56279881 | MS.gene036036:CDS |
AAGAAAATAGTTTATTGGTT+GGG | 0.336358 | 1.4:-56279798 | MS.gene036036:CDS |
TTTGTCTCTCCTGAAAATAT+TGG | 0.339057 | 1.4:-56278162 | MS.gene036036:CDS |
TCTGGCTGTAAAACATCTTT+AGG | 0.339519 | 1.4:+56280702 | None:intergenic |
ATTATCAAGCATGTCAATCT+TGG | 0.359732 | 1.4:+56279933 | None:intergenic |
AGAAGCATTTCAGAGAGTTC+AGG | 0.360974 | 1.4:-56279702 | MS.gene036036:CDS |
AACGGAGAAGGAAGCCGAAA+AGG | 0.363667 | 1.4:-56284438 | MS.gene036036:CDS |
CTTTCCTCAAATAAATTAGA+AGG | 0.368022 | 1.4:+56280819 | None:intergenic |
ATGTCAGATGCATTCAAAAT+AGG | 0.379639 | 1.4:+56282003 | None:intergenic |
AAGAGGCTTAAGGAGGAGTA+TGG | 0.382059 | 1.4:-56278818 | MS.gene036036:intron |
ATTCTTTAGACGGTGCTCTC+TGG | 0.384591 | 1.4:-56279771 | MS.gene036036:CDS |
AGAAAATAGTTTATTGGTTG+GGG | 0.387608 | 1.4:-56279797 | MS.gene036036:CDS |
TATGGATTTGCTCAGGAGCT+TGG | 0.388333 | 1.4:-56280654 | MS.gene036036:CDS |
GTGCTCTCTGGGATATCTTT+CGG | 0.394357 | 1.4:-56279759 | MS.gene036036:CDS |
TTATCAACGTCTTTGAGCTC+TGG | 0.394811 | 1.4:+56279820 | None:intergenic |
GGGAGCTACATGGTGATAAT+CGG | 0.399614 | 1.4:-56279966 | MS.gene036036:CDS |
GCCTCCTTCTAATTTATTTG+AGG | 0.400880 | 1.4:-56280823 | MS.gene036036:CDS |
ATTTGCTCAGGAGCTTGGGC+GGG | 0.402390 | 1.4:-56280649 | MS.gene036036:CDS |
CAAGTCTGCAGAGGACAAAT+TGG | 0.404949 | 1.4:-56278091 | MS.gene036036:CDS |
TGTGAAAACTATTGATTGCT+TGG | 0.405542 | 1.4:-56281740 | MS.gene036036:CDS |
GGTTTCTTGATTATCAAGAA+TGG | 0.405728 | 1.4:+56284532 | None:intergenic |
ATACCTTCAGATTTCGGACT+TGG | 0.410789 | 1.4:+56278629 | None:intergenic |
TTCAATGGCACTGGAGCAAA+GGG | 0.413215 | 1.4:-56281879 | MS.gene036036:CDS |
CTCAACCTCATGGTCATTGT+TGG | 0.418130 | 1.4:+56282989 | None:intergenic |
TTTGCTCAGGAGCTTGGGCG+GGG | 0.418489 | 1.4:-56280648 | MS.gene036036:CDS |
ATGGATTTGCTCAGGAGCTT+GGG | 0.418850 | 1.4:-56280653 | MS.gene036036:CDS |
TACATACCAACTGTTAATAC+AGG | 0.419767 | 1.4:+56283966 | None:intergenic |
AACTAATGTGGAGGAGGAGC+TGG | 0.421014 | 1.4:-56284351 | MS.gene036036:CDS |
AATGTACTTGAATGTACATC+AGG | 0.426491 | 1.4:-56281838 | MS.gene036036:CDS |
GTCCTTATTACAGACCAATA+AGG | 0.427034 | 1.4:+56284071 | None:intergenic |
TCATCCAATCGTCTTAAATA+CGG | 0.427692 | 1.4:+56282936 | None:intergenic |
TGGGTACACAAAGGCTCGCC+TGG | 0.428484 | 1.4:-56280886 | MS.gene036036:CDS |
TCAAATAAAACGTCTGATCA+TGG | 0.431981 | 1.4:+56278855 | None:intergenic |
TATGAACTCGGCACAATGAC+GGG | 0.437450 | 1.4:+56280791 | None:intergenic |
AACAACACAGTTGCTTTCAC+AGG | 0.439858 | 1.4:-56284563 | MS.gene036036:CDS |
TTCTTTAGACGGTGCTCTCT+GGG | 0.443773 | 1.4:-56279770 | MS.gene036036:CDS |
GGACTGGCTTAATTGGCCTC+AGG | 0.444813 | 1.4:-56280865 | MS.gene036036:CDS |
TTGCAATTGCAAAGCATGCT+TGG | 0.446682 | 1.4:-56283137 | MS.gene036036:CDS |
TTGTGTACCCAGTAAAGAAT+TGG | 0.446939 | 1.4:+56280898 | None:intergenic |
TCTTGACCATTCACGAATCT+CGG | 0.449180 | 1.4:+56282227 | None:intergenic |
AATGTACATCAGGTTTAAGC+TGG | 0.453673 | 1.4:-56281828 | MS.gene036036:CDS |
TGGAACTGAAGAAGATTAAG+AGG | 0.453829 | 1.4:-56284331 | MS.gene036036:CDS |
GACAAAATCAAGTGCAACCT+TGG | 0.456526 | 1.4:+56278179 | None:intergenic |
TGAGAAGGAGTGAGCGTGCT+AGG | 0.457513 | 1.4:-56284406 | MS.gene036036:CDS |
AGGAAGAAGAAGGTGGCAAT+TGG | 0.459943 | 1.4:-56284299 | MS.gene036036:CDS |
TGAAATGCACGGAATGCAAC+CGG | 0.461269 | 1.4:-56284005 | MS.gene036036:CDS |
GAAGTATGCTTCTCAGTTCA+AGG | 0.462341 | 1.4:+56282133 | None:intergenic |
ACACAAAGGCTCGCCTGGAC+TGG | 0.464280 | 1.4:-56280881 | MS.gene036036:CDS |
CTTTGTTGCTGCGAGCTTCG+TGG | 0.465758 | 1.4:-56282378 | MS.gene036036:CDS |
GCTTGATCTGGTCGAGAAGT+TGG | 0.466266 | 1.4:-56277505 | MS.gene036036:CDS |
ATTTGCACCAATTCTTTACT+GGG | 0.468225 | 1.4:-56280905 | MS.gene036036:CDS |
AAAGAAAATAGTTTATTGGT+TGG | 0.470270 | 1.4:-56279799 | MS.gene036036:CDS |
ATTCGTGAATGGTCAAGATC+TGG | 0.470424 | 1.4:-56282222 | MS.gene036036:CDS |
AGGGTATGCAAAATTTCTTC+CGG | 0.470503 | 1.4:+56283986 | None:intergenic |
TGTTGATGCTGCCGCTCCTC+CGG | 0.475825 | 1.4:-56284486 | MS.gene036036:CDS |
TTATCAAGCATGTCAATCTT+GGG | 0.478672 | 1.4:+56279934 | None:intergenic |
GCCGATGATGATTGTGATCA+TGG | 0.480443 | 1.4:-56282159 | MS.gene036036:CDS |
TCATATTGCTGAAGTGAAGC+TGG | 0.481347 | 1.4:-56280049 | MS.gene036036:CDS |
ATGTCCTCCTCTTTCAAGTC+AGG | 0.481667 | 1.4:+56283190 | None:intergenic |
ACGATTGGATGAAGAACAAA+TGG | 0.482210 | 1.4:-56282925 | MS.gene036036:CDS |
ACGGAGAAGGAAGCCGAAAA+GGG | 0.482416 | 1.4:-56284437 | MS.gene036036:CDS |
AGCTTCATCAGGAGCAGCTA+TGG | 0.485026 | 1.4:+56284511 | None:intergenic |
TGTGATTTACTGGAAGTTTG+CGG | 0.485220 | 1.4:+56278112 | None:intergenic |
TATTGCTTATGGATTTGCTC+AGG | 0.486399 | 1.4:-56280661 | MS.gene036036:CDS |
CCATTCACGAATCTCGGGTT+GGG | 0.489370 | 1.4:+56282233 | None:intergenic |
AAGATAAACTCAAACTCGAT+TGG | 0.491141 | 1.4:+56282330 | None:intergenic |
GATTTGCTCAGGAGCTTGGG+CGG | 0.493090 | 1.4:-56280650 | MS.gene036036:CDS |
TATGTATGCTATGCTTGATC+TGG | 0.494282 | 1.4:-56277517 | MS.gene036036:CDS |
TGATGAAATCAATGCTGCTC+AGG | 0.495231 | 1.4:-56284264 | MS.gene036036:CDS |
TCTTCCGTATTTAAGACGAT+TGG | 0.495391 | 1.4:-56282940 | MS.gene036036:CDS |
CTTGACCATTCACGAATCTC+GGG | 0.495468 | 1.4:+56282228 | None:intergenic |
GTAAAAGAAATGACAAGGGC+AGG | 0.498499 | 1.4:-56284032 | MS.gene036036:CDS |
CAGCTTCTGAACAAAAGTCC+AGG | 0.502730 | 1.4:+56278687 | None:intergenic |
CCTTCAGATTTCGGACTTGG+TGG | 0.506047 | 1.4:+56278632 | None:intergenic |
TGAAGAACAAATGGCTGAGA+AGG | 0.507808 | 1.4:-56282916 | MS.gene036036:CDS |
GCATCAACAGAAGCTTCATC+AGG | 0.508288 | 1.4:+56284500 | None:intergenic |
GGAGCTACATGGTGATAATC+GGG | 0.514858 | 1.4:-56279965 | MS.gene036036:CDS |
TTTCAATGGCACTGGAGCAA+AGG | 0.515097 | 1.4:-56281880 | MS.gene036036:CDS |
ACCATTCACGAATCTCGGGT+TGG | 0.516372 | 1.4:+56282232 | None:intergenic |
GCTCCCTCTTGTCTTGCTCA+AGG | 0.519343 | 1.4:+56279983 | None:intergenic |
GACATTGCCAAGAAATGTCC+AGG | 0.520062 | 1.4:-56283172 | MS.gene036036:CDS |
ACTTGGTGGGGACAACCAGC+TGG | 0.521593 | 1.4:+56278646 | None:intergenic |
TACAGTTTACATAGGAACCT+TGG | 0.524108 | 1.4:+56277271 | None:intergenic |
AAACTATTGATTGCTTGGAT+TGG | 0.524576 | 1.4:-56281735 | MS.gene036036:CDS |
GCATACCCTGTATTAACAGT+TGG | 0.527233 | 1.4:-56283972 | MS.gene036036:intron |
CTGTGGAGACTTCTGATAGT+AGG | 0.527371 | 1.4:-56282041 | MS.gene036036:CDS |
AGAACTTCTTATACTGTCCC+AGG | 0.529232 | 1.4:-56281936 | MS.gene036036:CDS |
GAATATACAGATCCTTTCAA+TGG | 0.530031 | 1.4:-56280750 | MS.gene036036:CDS |
GGACTCACCTGCACTTATCA+AGG | 0.530918 | 1.4:-56283116 | MS.gene036036:intron |
CGATTTGTGGAAAATGGAAG+TGG | 0.534768 | 1.4:-56279868 | MS.gene036036:CDS |
ATAAAACGTCTGATCATGGA+TGG | 0.535414 | 1.4:+56278859 | None:intergenic |
CCATTGCTCTCCTTTAAAGC+AGG | 0.538406 | 1.4:-56279674 | MS.gene036036:intron |
TTCAGATTTCGGACTTGGTG+GGG | 0.539205 | 1.4:+56278634 | None:intergenic |
AGATTAAGAGGAAACGTGGT+AGG | 0.541411 | 1.4:-56284319 | MS.gene036036:CDS |
GGATCTGTATATTCTTTGAA+CGG | 0.541600 | 1.4:+56280759 | None:intergenic |
ATGACGTAGATTTACTGCCC+TGG | 0.541910 | 1.4:+56281918 | None:intergenic |
TTGCAATTACCACAGCATCC+TGG | 0.543302 | 1.4:+56283154 | None:intergenic |
GAAACGTGGTAGGAAGAAGA+AGG | 0.546940 | 1.4:-56284309 | MS.gene036036:CDS |
CTGCCACGTTTCTTTGCCGG+AGG | 0.549368 | 1.4:+56284470 | None:intergenic |
CGAGGGCGTGATTATCTGCA+TGG | 0.550325 | 1.4:-56282306 | MS.gene036036:CDS |
GACTTGTAGGAATTGAACCC+TGG | 0.555009 | 1.4:-56278705 | MS.gene036036:intron |
GCTTGGTATTACGTATCTGA+CGG | 0.555671 | 1.4:+56281779 | None:intergenic |
GAACTGACCTTGATAAGTGC+AGG | 0.556203 | 1.4:+56283109 | None:intergenic |
ACAACACAGTTGCTTTCACA+GGG | 0.556589 | 1.4:-56284562 | MS.gene036036:CDS |
CTTCAGATTTCGGACTTGGT+GGG | 0.557725 | 1.4:+56278633 | None:intergenic |
TAAAACGTCTGATCATGGAT+GGG | 0.558437 | 1.4:+56278860 | None:intergenic |
TGACGTAGATTTACTGCCCT+GGG | 0.558873 | 1.4:+56281919 | None:intergenic |
AATGCACGCCACATGACAAA+CGG | 0.559884 | 1.4:+56281802 | None:intergenic |
GAAATCAATGCTGCTCAGGA+GGG | 0.560506 | 1.4:-56284260 | MS.gene036036:CDS |
GCTGGGAACCGTTTGTCATG+TGG | 0.563485 | 1.4:-56281810 | MS.gene036036:CDS |
CTGGGATATCTTTCGGAGAG+AGG | 0.564748 | 1.4:-56279752 | MS.gene036036:CDS |
TTACTTAACTAATGTGGAGG+AGG | 0.564991 | 1.4:-56284357 | MS.gene036036:CDS |
AAATCAATGCTGCTCAGGAG+GGG | 0.565311 | 1.4:-56284259 | MS.gene036036:CDS |
CACGAAGCTCGCAGCAACAA+AGG | 0.565525 | 1.4:+56282379 | None:intergenic |
AATTAAGCTTCAAGTTGCTG+TGG | 0.566902 | 1.4:-56282058 | MS.gene036036:CDS |
TGAAATCAATGCTGCTCAGG+AGG | 0.567663 | 1.4:-56284261 | MS.gene036036:CDS |
GCACCTTGAGCAAGACAAGA+GGG | 0.570458 | 1.4:-56279986 | MS.gene036036:CDS |
ACAGTATAAGAAGTTCTCAC+TGG | 0.571064 | 1.4:+56281942 | None:intergenic |
AAGTGGAATATGTGATGAAA+AGG | 0.573587 | 1.4:-56279851 | MS.gene036036:CDS |
GAGGCCAATTAAGCCAGTCC+AGG | 0.578924 | 1.4:+56280868 | None:intergenic |
AATCAATGCTGCTCAGGAGG+GGG | 0.580226 | 1.4:-56284258 | MS.gene036036:CDS |
TGAGGATTACTTAACTAATG+TGG | 0.581603 | 1.4:-56284363 | MS.gene036036:CDS |
GAATAGTAGATCGTTGAATG+AGG | 0.582028 | 1.4:-56284381 | MS.gene036036:CDS |
TGTATATTCTTTGAACGGCA+AGG | 0.583089 | 1.4:+56280764 | None:intergenic |
CCTGCTTTAAAGGAGAGCAA+TGG | 0.584616 | 1.4:+56279674 | None:intergenic |
GAGTTTGAGTTTATCTTCCG+AGG | 0.584896 | 1.4:-56282324 | MS.gene036036:CDS |
GAAAATAGTTTATTGGTTGG+GGG | 0.586081 | 1.4:-56279796 | MS.gene036036:CDS |
GTTGCTGCGAGCTTCGTGGT+GGG | 0.586137 | 1.4:-56282374 | MS.gene036036:CDS |
ATATGAACTCGGCACAATGA+CGG | 0.586817 | 1.4:+56280790 | None:intergenic |
AAGGTATCCTGACTTGAAAG+AGG | 0.587569 | 1.4:-56283197 | MS.gene036036:CDS |
AGGTTTAGAACACCATTGAA+AGG | 0.588651 | 1.4:+56280738 | None:intergenic |
CAAGACAAGAGGGAGCTACA+TGG | 0.591607 | 1.4:-56279976 | MS.gene036036:CDS |
GTCTGCAGAGGACAAATTGG+AGG | 0.593405 | 1.4:-56278088 | MS.gene036036:intron |
TGTTGCTGCGAGCTTCGTGG+TGG | 0.594415 | 1.4:-56282375 | MS.gene036036:CDS |
TGATCTGGTCGAGAAGTTGG+AGG | 0.595507 | 1.4:-56277502 | MS.gene036036:CDS |
TGATTGCTTGGATTGGTGTG+AGG | 0.595645 | 1.4:-56281728 | MS.gene036036:intron |
ACTTGGAGAGCTCAACCTCA+TGG | 0.596456 | 1.4:+56282979 | None:intergenic |
AAAACGTCTGATCATGGATG+GGG | 0.596952 | 1.4:+56278861 | None:intergenic |
CCCAACCCGAGATTCGTGAA+TGG | 0.597529 | 1.4:-56282233 | MS.gene036036:CDS |
ACGTTTCTTTGCCGGAGGAG+CGG | 0.599042 | 1.4:+56284475 | None:intergenic |
CTTTAGGCAACTTCACAGCA+AGG | 0.600321 | 1.4:+56280718 | None:intergenic |
AAGAAGGTGGCAATTGGTGT+CGG | 0.600696 | 1.4:-56284293 | MS.gene036036:CDS |
ATGTACATCAGGTTTAAGCT+GGG | 0.604955 | 1.4:-56281827 | MS.gene036036:CDS |
ACCATGATCACAATCATCAT+CGG | 0.605104 | 1.4:+56282158 | None:intergenic |
CGAGTGCTTTCGTTTGACAG+AGG | 0.605461 | 1.4:-56278139 | MS.gene036036:CDS |
GGCAGTAAATCTACGTCATG+AGG | 0.606103 | 1.4:-56281914 | MS.gene036036:CDS |
TAAAAGAAATGACAAGGGCA+GGG | 0.606870 | 1.4:-56284031 | MS.gene036036:CDS |
TCCTCAAATAAATTAGAAGG+AGG | 0.607054 | 1.4:+56280822 | None:intergenic |
TGGAATATGTGATGAAAAGG+TGG | 0.607337 | 1.4:-56279848 | MS.gene036036:CDS |
AGTTTGAGTTTATCTTCCGA+GGG | 0.609136 | 1.4:-56282323 | MS.gene036036:CDS |
GATACATCTACAGTTTACAT+AGG | 0.609345 | 1.4:+56277263 | None:intergenic |
TCTTTCAGTTTCAAAACCTG+AGG | 0.609559 | 1.4:+56280849 | None:intergenic |
AGCTTCTGAACAAAAGTCCA+GGG | 0.617796 | 1.4:+56278688 | None:intergenic |
AGCACCTTGAGCAAGACAAG+AGG | 0.618569 | 1.4:-56279987 | MS.gene036036:CDS |
GAGATAGAAGCAAAGAGACA+AGG | 0.619116 | 1.4:-56282894 | MS.gene036036:intron |
TCGGGTTGGGCAGCAGCACG+AGG | 0.619296 | 1.4:+56282246 | None:intergenic |
ATGCATTGAACAGCAACAGA+TGG | 0.621495 | 1.4:-56284225 | MS.gene036036:intron |
CGGCAAGGAAGATATGAACT+CGG | 0.631163 | 1.4:+56280779 | None:intergenic |
TCGAGAAGTTGGAGGAAGCA+AGG | 0.632086 | 1.4:-56277494 | MS.gene036036:intron |
CATACACAATAGCACAAGGA+AGG | 0.637072 | 1.4:-56281983 | MS.gene036036:CDS |
GCTCCTCCGGCAAAGAAACG+TGG | 0.637351 | 1.4:-56284473 | MS.gene036036:CDS |
CATGCAGATAATCACGCCCT+CGG | 0.639805 | 1.4:+56282307 | None:intergenic |
TTACAGGTCTGGAGAAACCA+AGG | 0.639931 | 1.4:-56277288 | MS.gene036036:intron |
CCACCAAGTCCGAAATCTGA+AGG | 0.644909 | 1.4:-56278632 | MS.gene036036:intron |
GAAGTGAAGCTGGATTCTAA+GGG | 0.652860 | 1.4:-56280039 | MS.gene036036:CDS |
AAAAGGGCGAAAGTGTGAGA+AGG | 0.653518 | 1.4:-56284421 | MS.gene036036:CDS |
CGATTTGCAGTCATGCACCA+AGG | 0.654677 | 1.4:-56278196 | MS.gene036036:intron |
CTGACATACACAATAGCACA+AGG | 0.658068 | 1.4:-56281987 | MS.gene036036:CDS |
GGGCAGGGTTGTGAAATGCA+CGG | 0.660572 | 1.4:-56284016 | MS.gene036036:CDS |
GGATGGCTTGCAGACAGTGA+TGG | 0.662046 | 1.4:-56282201 | MS.gene036036:CDS |
ATTCTTTACTGGGTACACAA+AGG | 0.662591 | 1.4:-56280895 | MS.gene036036:CDS |
ATGAACTCGGCACAATGACG+GGG | 0.667242 | 1.4:+56280792 | None:intergenic |
GTATCCTGACTTGAAAGAGG+AGG | 0.668706 | 1.4:-56283194 | MS.gene036036:CDS |
TCAATGTAAAAGAAATGACA+AGG | 0.668906 | 1.4:-56284037 | MS.gene036036:CDS |
CGTGGTGGGAAGCTTCTAGG+TGG | 0.669451 | 1.4:-56282360 | MS.gene036036:CDS |
CTACATGGTGATAATCGGGA+CGG | 0.669945 | 1.4:-56279961 | MS.gene036036:CDS |
GTGAATGGTCAAGATCTGGA+TGG | 0.677090 | 1.4:-56282218 | MS.gene036036:CDS |
AGTAAATCACAAGTCTGCAG+AGG | 0.679551 | 1.4:-56278100 | MS.gene036036:CDS |
ACATACCAACTGTTAATACA+GGG | 0.682457 | 1.4:+56283967 | None:intergenic |
GGATTACTTAACTAATGTGG+AGG | 0.684192 | 1.4:-56284360 | MS.gene036036:CDS |
AAGAAATGTCCAGGATGCTG+TGG | 0.691596 | 1.4:-56283163 | MS.gene036036:CDS |
AAGAAGATTAAGAGGAAACG+TGG | 0.692101 | 1.4:-56284323 | MS.gene036036:CDS |
GAACTTCTTATACTGTCCCA+GGG | 0.693482 | 1.4:-56281935 | MS.gene036036:CDS |
GGGCGTGATTATCTGCATGG+TGG | 0.701277 | 1.4:-56282303 | MS.gene036036:CDS |
CTGCATCTGACATATCACAA+TGG | 0.702155 | 1.4:+56280607 | None:intergenic |
ACGTGGTAGGAAGAAGAAGG+TGG | 0.709702 | 1.4:-56284306 | MS.gene036036:CDS |
CAATGTAAAAGAAATGACAA+GGG | 0.715489 | 1.4:-56284036 | MS.gene036036:CDS |
AGAAACCAACAATGACCATG+AGG | 0.730663 | 1.4:-56282994 | MS.gene036036:CDS |
TCAATGGCACTGGAGCAAAG+GGG | 0.769506 | 1.4:-56281878 | MS.gene036036:CDS |
CAACACAGTTGCTTTCACAG+GGG | 0.779411 | 1.4:-56284561 | MS.gene036036:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 56277277 | 56284609 | 56277277 | ID=MS.gene036036 |
chr1.4 | mRNA | 56277277 | 56284609 | 56277277 | ID=MS.gene036036.t1;Parent=MS.gene036036 |
chr1.4 | exon | 56284226 | 56284609 | 56284226 | ID=MS.gene036036.t1.exon1;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56284226 | 56284609 | 56284226 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56283973 | 56284109 | 56283973 | ID=MS.gene036036.t1.exon2;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56283973 | 56284109 | 56283973 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56283117 | 56283216 | 56283117 | ID=MS.gene036036.t1.exon3;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56283117 | 56283216 | 56283117 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56282895 | 56283033 | 56282895 | ID=MS.gene036036.t1.exon4;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56282895 | 56283033 | 56282895 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56282549 | 56282612 | 56282549 | ID=MS.gene036036.t1.exon5;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56282549 | 56282612 | 56282549 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56281729 | 56282470 | 56281729 | ID=MS.gene036036.t1.exon6;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56281729 | 56282470 | 56281729 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56280608 | 56280937 | 56280608 | ID=MS.gene036036.t1.exon7;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56280608 | 56280937 | 56280608 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56279675 | 56280085 | 56279675 | ID=MS.gene036036.t1.exon8;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56279675 | 56280085 | 56279675 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56278819 | 56278891 | 56278819 | ID=MS.gene036036.t1.exon9;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56278819 | 56278891 | 56278819 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56278633 | 56278718 | 56278633 | ID=MS.gene036036.t1.exon10;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56278633 | 56278718 | 56278633 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56278089 | 56278208 | 56278089 | ID=MS.gene036036.t1.exon11;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56278089 | 56278208 | 56278089 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56277495 | 56277553 | 56277495 | ID=MS.gene036036.t1.exon12;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56277495 | 56277553 | 56277495 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
chr1.4 | exon | 56277277 | 56277304 | 56277277 | ID=MS.gene036036.t1.exon13;Parent=MS.gene036036.t1 |
chr1.4 | CDS | 56277277 | 56277304 | 56277277 | ID=cds.MS.gene036036.t1;Parent=MS.gene036036.t1 |
Gene Sequence |
Protein sequence |