AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036037

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036037.t1 MTR_4g094632 61.935 155 56 1 1 155 1 152 2.72e-62 189
MS.gene036037.t1 MTR_4g094638 67.089 158 49 1 1 155 1 158 7.31e-60 183
MS.gene036037.t1 MTR_8g079502 39.759 166 87 3 1 155 1 164 9.77e-30 107
MS.gene036037.t1 MTR_1g047550 36.585 164 95 2 1 155 1 164 4.95e-27 100
MS.gene036037.t1 MTR_1g054265 38.824 170 83 5 1 155 1 164 1.56e-26 98.6
MS.gene036037.t1 MTR_1g063160 36.686 169 88 3 1 155 1 164 3.83e-26 97.8
MS.gene036037.t1 MTR_8g046350 37.037 162 91 3 1 155 1 158 7.43e-26 96.7
MS.gene036037.t1 MTR_8g051580 37.805 164 93 2 1 155 1 164 1.00e-25 96.7
MS.gene036037.t1 MTR_4g131030 35.165 182 90 5 1 155 1 181 1.06e-24 95.1
MS.gene036037.t1 MTR_3g080940 36.129 155 85 3 1 141 8 162 2.38e-23 91.3
MS.gene036037.t1 MTR_1g108580 36.424 151 82 3 2 138 9 159 5.34e-22 88.2
MS.gene036037.t1 MTR_1g108510 33.775 151 86 3 2 138 9 159 2.59e-19 81.3
MS.gene036037.t1 MTR_2g093190 34.437 151 85 3 2 138 9 159 4.24e-19 80.5
MS.gene036037.t1 MTR_3g030770 33.775 151 86 3 2 138 9 159 5.46e-19 80.5
MS.gene036037.t1 MTR_7g075870 34.058 138 82 3 1 135 1 132 5.55e-19 80.1
MS.gene036037.t1 MTR_1g106070 30.539 167 102 3 2 154 9 175 1.25e-18 78.6
MS.gene036037.t1 MTR_3g052920 31.953 169 97 3 2 154 9 175 2.41e-18 79.0
MS.gene036037.t1 MTR_7g075870 34.532 139 81 4 1 135 1 133 6.71e-18 77.0
MS.gene036037.t1 MTR_2g105290 33.557 149 87 4 1 138 11 158 7.78e-18 76.3
MS.gene036037.t1 MTR_5g066180 32.394 142 77 3 1 135 1 130 1.07e-17 77.0
MS.gene036037.t1 MTR_2g009890 33.333 135 86 2 1 135 1 131 1.51e-17 77.4
MS.gene036037.t1 MTR_7g028448 32.576 132 79 3 17 142 27 154 1.90e-17 75.1
MS.gene036037.t1 MTR_4g036915 32.576 132 79 3 17 142 27 154 1.90e-17 75.1
MS.gene036037.t1 MTR_5g045560 36.207 116 68 2 1 114 8 119 2.17e-17 76.3
MS.gene036037.t1 MTR_4g109830 32.414 145 87 3 1 144 1 135 4.58e-17 75.5
MS.gene036037.t1 MTR_8g043650 29.940 167 103 3 2 154 9 175 5.72e-17 75.1
MS.gene036037.t1 MTR_3g452380 31.111 135 90 1 1 135 16 147 9.70e-17 74.7
MS.gene036037.t1 MTR_3g052870 37.143 105 64 1 2 104 9 113 1.02e-16 74.3
MS.gene036037.t1 MTR_5g032520 33.333 141 79 3 1 135 1 132 1.29e-16 73.9
MS.gene036037.t1 MTR_8g033220 33.562 146 89 2 1 143 1 141 1.30e-16 73.9
MS.gene036037.t1 MTR_5g053390 36.207 116 65 1 2 117 9 115 1.46e-16 73.9
MS.gene036037.t1 MTR_8g033220 33.562 146 89 2 1 143 1 141 1.57e-16 73.9
MS.gene036037.t1 MTR_1g105920 37.143 105 64 1 2 104 9 113 2.03e-16 73.6
MS.gene036037.t1 MTR_1g105910 37.143 105 64 1 2 104 9 113 3.27e-16 73.2
MS.gene036037.t1 MTR_1g012570 28.144 167 106 3 2 154 9 175 6.29e-16 72.4
MS.gene036037.t1 MTR_5g032150 32.624 141 80 3 1 135 1 132 7.61e-16 72.0
MS.gene036037.t1 MTR_1g038300 32.624 141 85 3 1 135 1 137 8.07e-16 72.0
MS.gene036037.t1 MTR_3g113030 36.364 110 59 2 1 99 1 110 1.18e-15 71.6
MS.gene036037.t1 MTR_8g033270 34.058 138 71 3 1 118 1 138 2.98e-15 70.9
MS.gene036037.t1 MTR_1g029670 30.986 142 81 4 1 131 1 136 3.53e-15 69.3
MS.gene036037.t1 MTR_1g075600 34.286 105 67 1 2 104 9 113 4.72e-15 70.1
MS.gene036037.t1 MTR_5g066960 50.000 60 30 0 1 60 1 60 4.84e-15 65.9
MS.gene036037.t1 MTR_7g016630 32.117 137 83 4 1 136 1 128 4.92e-15 70.5
MS.gene036037.t1 MTR_3g088615 46.154 65 35 0 1 65 1 65 4.99e-15 68.9
MS.gene036037.t1 MTR_3g030780 33.333 105 68 1 2 104 9 113 5.95e-15 67.8
MS.gene036037.t1 MTR_8g086290 29.801 151 88 3 2 138 12 158 6.28e-15 68.6
MS.gene036037.t1 MTR_5g031000 44.928 69 38 0 1 69 1 69 6.60e-15 69.7
MS.gene036037.t1 MTR_1g053070 31.944 144 94 2 1 143 1 141 6.76e-15 69.7
MS.gene036037.t1 MTR_4g093970 34.400 125 72 2 1 117 27 149 7.32e-15 69.7
MS.gene036037.t1 MTR_5g031000 44.928 69 38 0 1 69 1 69 7.44e-15 69.3
MS.gene036037.t1 MTR_0003s0590 52.542 59 28 0 1 59 1 59 7.57e-15 69.7
MS.gene036037.t1 MTR_3g005530 32.836 134 69 4 1 113 1 134 8.18e-15 69.3
MS.gene036037.t1 MTR_0121s0100 35.714 98 61 1 2 97 9 106 1.31e-14 66.6
MS.gene036037.t1 MTR_5g021270 32.000 150 85 6 1 146 1 137 1.39e-14 68.6
MS.gene036037.t1 MTR_5g021270 32.000 150 85 6 1 146 1 137 1.57e-14 68.6
MS.gene036037.t1 MTR_5g046790 31.884 138 87 2 1 137 1 132 1.57e-14 68.2
MS.gene036037.t1 MTR_2g030740 35.238 105 66 1 2 104 9 113 2.19e-14 68.2
MS.gene036037.t1 MTR_4g102530 32.450 151 95 3 1 149 1 146 2.31e-14 67.8
MS.gene036037.t1 MTR_1g077360 40.278 72 43 0 2 73 9 80 3.70e-14 67.8
MS.gene036037.t1 MTR_2g085250 32.231 121 64 2 2 114 9 119 4.41e-14 67.4
MS.gene036037.t1 MTR_2g085280 32.231 121 64 2 2 114 9 119 4.83e-14 67.4
MS.gene036037.t1 MTR_3g102570 41.463 82 47 1 1 81 1 82 9.24e-14 67.4
MS.gene036037.t1 MTR_5g055100 32.237 152 85 5 2 137 9 158 1.03e-13 66.6
MS.gene036037.t1 MTR_0121s0080 35.238 105 66 1 2 104 9 113 1.32e-13 66.2
MS.gene036037.t1 MTR_4g093030 50.000 60 30 0 1 60 1 60 1.40e-13 64.7
MS.gene036037.t1 MTR_7g016600 47.541 61 32 0 1 61 1 61 1.47e-13 66.2
MS.gene036037.t1 MTR_1g101970 34.615 104 59 1 1 104 1 95 1.52e-13 65.1
MS.gene036037.t1 MTR_4g127140 30.114 176 101 4 1 155 11 185 2.86e-13 64.3
MS.gene036037.t1 MTR_6g464720 45.902 61 33 0 1 61 1 61 3.15e-13 65.5
MS.gene036037.t1 MTR_8g087860 25.000 152 111 1 1 152 17 165 3.48e-13 65.1
MS.gene036037.t1 MTR_6g015975 42.105 76 43 1 1 75 1 76 3.49e-13 65.1
MS.gene036037.t1 MTR_2g461710 44.068 59 33 0 1 59 1 59 3.97e-13 60.8
MS.gene036037.t1 MTR_5g046870 45.902 61 33 0 1 61 1 61 4.84e-13 62.0
MS.gene036037.t1 MTR_8g097090 47.541 61 32 0 1 61 1 61 5.55e-13 64.7
MS.gene036037.t1 MTR_3g084980 47.541 61 32 0 1 61 1 61 5.97e-13 64.3
MS.gene036037.t1 MTR_8g066260 44.262 61 34 0 1 61 1 61 8.33e-13 63.9
MS.gene036037.t1 MTR_6g081890 51.899 79 27 1 65 143 82 149 1.19e-12 62.4
MS.gene036037.t1 MTR_3g109930 31.469 143 84 4 15 144 15 156 1.23e-12 62.4
MS.gene036037.t1 MTR_5g041650 51.852 54 26 0 1 54 38 91 1.71e-12 64.3
MS.gene036037.t1 MTR_4g109810 45.902 61 33 0 1 61 1 61 1.72e-12 63.2
MS.gene036037.t1 MTR_7g075850 32.520 123 76 2 1 122 1 117 1.82e-12 63.2
MS.gene036037.t1 MTR_8g022970 32.484 157 89 4 3 144 19 173 1.85e-12 62.4
MS.gene036037.t1 MTR_4g036050 34.783 115 67 4 1 113 1 109 4.06e-12 61.2
MS.gene036037.t1 MTR_4g036050 34.783 115 67 4 1 113 1 109 4.31e-12 61.2
MS.gene036037.t1 MTR_4g036050 34.783 115 67 4 1 113 1 109 4.40e-12 61.2
MS.gene036037.t1 MTR_4g036050 34.783 115 67 4 1 113 1 109 4.57e-12 61.6
MS.gene036037.t1 MTR_2g017865 45.902 61 33 0 1 61 16 76 4.65e-12 62.4
MS.gene036037.t1 MTR_1g105905 31.959 97 64 1 11 105 1 97 9.52e-12 60.8
MS.gene036037.t1 MTR_1g041615 55.319 47 21 0 13 59 17 63 2.15e-11 58.5
MS.gene036037.t1 MTR_3g067875 47.273 55 29 0 11 65 1 55 4.28e-11 55.8
MS.gene036037.t1 MTR_4g108720 48.148 54 28 0 1 54 1 54 5.35e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036037.t1 AT2G34440 34.884 172 93 4 1 153 1 172 2.60e-26 98.2
MS.gene036037.t1 AT3G66656 55.224 67 30 0 1 67 1 67 2.11e-21 85.5
MS.gene036037.t1 AT2G45660 34.074 135 86 1 1 135 1 132 5.14e-21 84.0
MS.gene036037.t1 AT3G57230 35.556 135 83 2 1 135 1 131 5.38e-21 83.6
MS.gene036037.t1 AT2G45660 34.074 135 86 1 1 135 1 132 1.95e-20 84.0
MS.gene036037.t1 AT3G57230 36.296 135 82 2 1 135 1 131 3.21e-20 84.0
MS.gene036037.t1 AT3G57230 36.296 135 82 2 1 135 1 131 3.21e-20 84.0
MS.gene036037.t1 AT2G24840 32.121 165 79 5 1 141 62 217 3.22e-19 81.6
MS.gene036037.t1 AT1G28460 49.275 69 35 0 2 70 8 76 4.11e-19 79.7
MS.gene036037.t1 AT1G29962 47.826 69 36 0 2 70 8 76 6.42e-19 79.3
MS.gene036037.t1 AT1G47760 34.483 145 79 4 1 141 1 133 3.59e-18 77.4
MS.gene036037.t1 AT3G54340 30.556 144 76 3 1 135 1 129 5.55e-17 75.1
MS.gene036037.t1 AT2G22540 49.275 69 35 0 1 69 1 69 1.84e-16 73.9
MS.gene036037.t1 AT2G22540 49.275 69 35 0 1 69 1 69 1.84e-16 73.9
MS.gene036037.t1 AT4G24540 33.333 141 79 3 1 135 1 132 3.44e-16 72.8
MS.gene036037.t1 AT2G45650 32.639 144 90 1 1 144 1 137 4.00e-16 73.2
MS.gene036037.t1 AT4G37940 46.377 69 37 0 1 69 1 69 4.50e-16 72.8
MS.gene036037.t1 AT4G22950 31.126 151 96 2 1 149 1 145 4.69e-16 71.6
MS.gene036037.t1 AT1G65360 36.449 107 66 2 1 106 6 111 5.78e-16 72.4
MS.gene036037.t1 AT4G37940 46.377 69 37 0 1 69 1 69 5.96e-16 72.0
MS.gene036037.t1 AT4G37940 46.377 69 37 0 1 69 1 69 8.18e-16 70.9
MS.gene036037.t1 AT4G22950 31.126 151 96 2 1 149 1 145 1.05e-15 71.6
MS.gene036037.t1 AT4G22950 31.126 151 96 2 1 149 1 145 1.05e-15 71.6
MS.gene036037.t1 AT5G10140 49.153 59 30 0 1 59 1 59 1.88e-15 69.7
MS.gene036037.t1 AT5G60910 31.724 145 88 3 1 144 1 135 2.02e-15 71.2
MS.gene036037.t1 AT5G10140 49.153 59 30 0 1 59 1 59 2.34e-15 70.1
MS.gene036037.t1 AT5G10140 49.153 59 30 0 1 59 1 59 2.71e-15 69.7
MS.gene036037.t1 AT4G09960 28.667 150 104 1 1 150 1 147 3.00e-15 70.5
MS.gene036037.t1 AT4G09960 28.667 150 104 1 1 150 11 157 3.04e-15 70.9
MS.gene036037.t1 AT4G09960 28.667 150 104 1 1 150 2 148 3.21e-15 70.5
MS.gene036037.t1 AT5G10140 49.153 59 30 0 1 59 1 59 3.42e-15 69.7
MS.gene036037.t1 AT4G09960 28.667 150 104 1 1 150 27 173 3.83e-15 70.5
MS.gene036037.t1 AT5G65070 45.763 59 32 0 1 59 1 59 4.01e-15 68.6
MS.gene036037.t1 AT3G57390 40.964 83 49 0 1 83 1 83 4.09e-15 70.1
MS.gene036037.t1 AT2G14210 50.820 61 30 0 1 61 1 61 4.11e-15 70.1
MS.gene036037.t1 AT2G14210 50.820 61 30 0 1 61 1 61 5.12e-15 70.1
MS.gene036037.t1 AT1G28450 43.478 69 39 0 2 70 8 76 5.51e-15 68.9
MS.gene036037.t1 AT3G57390 40.964 83 49 0 1 83 1 83 6.20e-15 70.1
MS.gene036037.t1 AT5G65070 45.763 59 32 0 1 59 1 59 6.79e-15 68.9
MS.gene036037.t1 AT4G09960 28.477 151 105 1 1 151 96 243 7.46e-15 70.5
MS.gene036037.t1 AT4G09960 32.812 128 66 3 1 108 1 128 8.49e-15 68.9
MS.gene036037.t1 AT5G20240 45.455 66 36 0 1 66 1 66 9.19e-15 67.8
MS.gene036037.t1 AT5G13790 50.847 59 29 0 1 59 1 59 9.31e-15 69.7
MS.gene036037.t1 AT5G13790 50.847 59 29 0 1 59 1 59 9.31e-15 69.7
MS.gene036037.t1 AT2G42830 28.289 152 106 1 1 152 16 164 1.08e-14 69.3
MS.gene036037.t1 AT2G42830 28.289 152 106 1 1 152 16 164 1.09e-14 69.3
MS.gene036037.t1 AT5G51860 31.111 135 91 2 1 135 1 133 1.17e-14 68.6
MS.gene036037.t1 AT5G51860 31.111 135 91 2 1 135 1 133 1.40e-14 68.2
MS.gene036037.t1 AT5G51870 43.478 69 39 0 1 69 1 69 1.56e-14 67.4
MS.gene036037.t1 AT5G62165 41.096 73 43 0 1 73 1 73 1.68e-14 67.0
MS.gene036037.t1 AT5G62165 41.096 73 43 0 1 73 1 73 1.68e-14 67.0
MS.gene036037.t1 AT5G62165 41.096 73 43 0 1 73 1 73 1.68e-14 67.0
MS.gene036037.t1 AT5G20240 45.455 66 36 0 1 66 1 66 1.76e-14 68.2
MS.gene036037.t1 AT5G51870 43.478 69 39 0 1 69 1 69 1.92e-14 68.2
MS.gene036037.t1 AT5G51870 43.478 69 39 0 1 69 24 92 1.99e-14 67.8
MS.gene036037.t1 AT5G65070 45.763 59 32 0 1 59 1 59 2.04e-14 68.2
MS.gene036037.t1 AT5G62165 46.032 63 34 0 1 63 1 63 2.26e-14 66.6
MS.gene036037.t1 AT5G62165 46.032 63 34 0 1 63 1 63 2.26e-14 66.6
MS.gene036037.t1 AT5G62165 46.032 63 34 0 1 63 1 63 2.26e-14 66.6
MS.gene036037.t1 AT5G62165 46.032 63 34 0 1 63 1 63 2.26e-14 66.6
MS.gene036037.t1 AT5G62165 46.032 63 34 0 1 63 1 63 2.26e-14 66.6
MS.gene036037.t1 AT5G65070 45.763 59 32 0 1 59 1 59 2.61e-14 67.8
MS.gene036037.t1 AT5G51870 43.478 69 39 0 1 69 1 69 2.66e-14 67.8
MS.gene036037.t1 AT1G01530 33.962 106 70 0 1 106 6 111 2.79e-14 68.2
MS.gene036037.t1 AT5G65070 45.763 59 32 0 1 59 1 59 3.67e-14 67.8
MS.gene036037.t1 AT5G51870 43.478 69 39 0 1 69 11 79 3.84e-14 67.4
MS.gene036037.t1 AT5G62165 40.541 74 44 0 1 74 1 74 4.88e-14 64.7
MS.gene036037.t1 AT4G11880 49.180 61 31 0 1 61 1 61 5.18e-14 66.2
MS.gene036037.t1 AT4G11880 49.180 61 31 0 1 61 1 61 5.18e-14 66.2
MS.gene036037.t1 AT5G23260 52.542 59 28 0 1 59 1 59 5.61e-14 67.4
MS.gene036037.t1 AT5G62165 41.096 73 43 0 1 73 1 73 5.93e-14 66.6
MS.gene036037.t1 AT5G62165 41.096 73 43 0 1 73 1 73 5.93e-14 66.6
MS.gene036037.t1 AT5G62165 41.096 73 43 0 1 73 1 73 6.24e-14 66.6
MS.gene036037.t1 AT5G62165 41.096 73 43 0 1 73 1 73 6.24e-14 66.6
MS.gene036037.t1 AT5G62165 41.096 73 43 0 1 73 1 73 6.24e-14 66.6
MS.gene036037.t1 AT5G23260 52.542 59 28 0 1 59 17 75 6.68e-14 67.4
MS.gene036037.t1 AT5G23260 52.542 59 28 0 1 59 1 59 6.69e-14 67.0
MS.gene036037.t1 AT5G23260 52.542 59 28 0 1 59 17 75 6.90e-14 67.4
MS.gene036037.t1 AT3G58780 28.105 153 105 2 1 152 16 164 7.00e-14 67.0
MS.gene036037.t1 AT3G58780 27.451 153 99 2 1 152 16 157 7.23e-14 67.0
MS.gene036037.t1 AT5G65050 45.763 59 32 0 1 59 1 59 7.43e-14 65.9
MS.gene036037.t1 AT3G58780 28.105 153 105 2 1 152 22 170 7.55e-14 67.0
MS.gene036037.t1 AT3G04100 34.247 146 68 4 2 147 14 131 8.85e-14 66.2
MS.gene036037.t1 AT3G30260 41.667 72 41 1 1 71 1 72 1.27e-13 66.2
MS.gene036037.t1 AT4G11880 49.180 61 31 0 1 61 1 61 1.40e-13 65.9
MS.gene036037.t1 AT4G11880 49.180 61 31 0 1 61 1 61 1.40e-13 65.9
MS.gene036037.t1 AT3G58780 29.630 135 92 1 1 135 16 147 1.78e-13 66.2
MS.gene036037.t1 AT2G03710 48.387 62 31 1 1 61 1 62 1.86e-13 65.1
MS.gene036037.t1 AT3G02310 47.541 61 32 0 1 61 1 61 1.90e-13 65.1
MS.gene036037.t1 AT3G61120 50.877 57 28 0 1 57 1 57 1.92e-13 65.9
MS.gene036037.t1 AT1G26310 31.061 132 86 3 1 131 1 128 2.09e-13 65.9
MS.gene036037.t1 AT5G60440 30.588 170 101 4 2 154 7 176 2.38e-13 66.2
MS.gene036037.t1 AT5G65050 45.763 59 32 0 1 59 1 59 3.03e-13 64.3
MS.gene036037.t1 AT3G58780 48.387 62 32 0 1 62 16 77 3.05e-13 65.5
MS.gene036037.t1 AT5G65050 45.763 59 32 0 1 59 1 59 3.20e-13 64.7
MS.gene036037.t1 AT5G65060 44.068 59 33 0 1 59 1 59 3.21e-13 64.3
MS.gene036037.t1 AT5G65050 45.763 59 32 0 1 59 1 59 3.41e-13 64.3
MS.gene036037.t1 AT1G69120 37.778 90 53 2 1 89 1 88 3.57e-13 65.1
MS.gene036037.t1 AT2G22540 52.727 55 26 0 1 55 1 55 3.64e-13 65.1
MS.gene036037.t1 AT1G71692 40.789 76 44 1 1 75 1 76 3.91e-13 64.7
MS.gene036037.t1 AT5G15800 47.541 61 32 0 1 61 1 61 4.34e-13 65.1
MS.gene036037.t1 AT1G69120 37.778 90 53 2 1 89 1 88 5.70e-13 64.7
MS.gene036037.t1 AT3G02310 47.541 61 32 0 1 61 1 61 5.77e-13 64.7
MS.gene036037.t1 AT5G65060 44.068 59 33 0 1 59 1 59 6.43e-13 63.5
MS.gene036037.t1 AT5G15800 47.541 61 32 0 1 61 1 61 6.47e-13 64.7
MS.gene036037.t1 AT5G65060 44.068 59 33 0 1 59 1 59 7.27e-13 63.5
MS.gene036037.t1 AT2G03710 31.973 147 86 5 1 139 1 141 7.34e-13 64.3
MS.gene036037.t1 AT2G03710 31.973 147 86 5 1 139 1 141 7.96e-13 64.3
MS.gene036037.t1 AT1G24260 47.541 61 32 0 1 61 1 61 8.23e-13 64.3
MS.gene036037.t1 AT1G24260 47.541 61 32 0 1 61 1 61 8.23e-13 64.3
MS.gene036037.t1 AT1G24260 47.541 61 32 0 1 61 1 61 9.35e-13 63.9
MS.gene036037.t1 AT4G37435 49.123 57 29 0 1 57 1 57 1.35e-12 62.8
MS.gene036037.t1 AT2G03060 53.846 52 24 0 1 52 1 52 1.76e-12 63.9
MS.gene036037.t1 AT2G03060 53.846 52 24 0 1 52 1 52 1.76e-12 63.9
MS.gene036037.t1 AT2G03060 53.846 52 24 0 1 52 1 52 1.76e-12 63.9
MS.gene036037.t1 AT2G03060 53.846 52 24 0 1 52 1 52 1.89e-12 63.9
MS.gene036037.t1 AT4G36590 48.387 62 32 0 2 63 7 68 2.36e-12 62.8
MS.gene036037.t1 AT1G72350 44.286 70 37 1 2 71 43 110 2.86e-12 62.4
MS.gene036037.t1 AT2G22630 45.902 61 33 0 1 61 1 61 3.78e-12 62.0
MS.gene036037.t1 AT2G22630 45.902 61 33 0 1 61 1 61 3.78e-12 62.0
MS.gene036037.t1 AT1G22130 52.941 51 24 0 1 51 1 51 5.73e-12 62.4
MS.gene036037.t1 AT4G18960 34.091 132 57 4 2 108 18 144 7.08e-12 61.6
MS.gene036037.t1 AT1G77980 52.941 51 24 0 1 51 1 51 1.19e-11 61.6
MS.gene036037.t1 AT2G26320 39.130 69 40 1 1 67 17 85 1.66e-11 58.2
MS.gene036037.t1 AT1G77080 64.103 39 14 0 1 39 1 39 5.84e-11 58.2
MS.gene036037.t1 AT1G77080 64.103 39 14 0 1 39 1 39 6.30e-11 58.2
MS.gene036037.t1 AT1G18750 47.368 57 30 0 1 57 1 57 6.60e-11 59.7
MS.gene036037.t1 AT1G18750 47.368 57 30 0 1 57 1 57 7.05e-11 59.7
MS.gene036037.t1 AT1G18750 47.368 57 30 0 1 57 1 57 7.80e-11 59.3
MS.gene036037.t1 AT1G77080 64.103 39 14 0 1 39 1 39 9.36e-11 57.0

Find 27 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGCTCGACAAAGAACTTA+TGG 0.305074 1.4:-56289608 MS.gene036037:CDS
GCTGGTAACCCATTTGCTTT+CGG 0.351171 1.4:-56289730 MS.gene036037:CDS
AATGCTAGAGTTGGTATAGT+TGG 0.376951 1.4:-56289763 MS.gene036037:CDS
GAGGGAGAACCGAAAGCAAA+TGG 0.413374 1.4:+56289721 None:intergenic
TTTGTTCTCAACAAATTCAA+TGG 0.416645 1.4:+56289861 None:intergenic
TCAAGATCATCATAGGCAAT+AGG 0.426879 1.4:+56289535 None:intergenic
ATCAAAATCAAGATCATCAT+AGG 0.431840 1.4:+56289528 None:intergenic
GTGCTCGACAAAGAACTTAT+GGG 0.466259 1.4:-56289607 MS.gene036037:CDS
ATCACATAGGTTTCTTTGCA+AGG 0.474087 1.4:+56289434 None:intergenic
AAAGCAAATGGGTTACCAGC+AGG 0.484877 1.4:+56289733 None:intergenic
ATTCTTTGTAATGCTAGAGT+TGG 0.486006 1.4:-56289772 MS.gene036037:CDS
ATAGTTGGATTTACCCCTGC+TGG 0.488873 1.4:-56289748 MS.gene036037:CDS
ATTCTTTCTCTTAGAAAATG+TGG 0.500833 1.4:+56289825 None:intergenic
ATCGGCCACAACTTGAAAAG+AGG 0.537552 1.4:+56289702 None:intergenic
AGGGAGAACCGAAAGCAAAT+GGG 0.546270 1.4:+56289722 None:intergenic
AAGCAAATGGGTTACCAGCA+GGG 0.566084 1.4:+56289734 None:intergenic
TGTTTCACGAAGGTGCTCAT+CGG 0.573884 1.4:+56289684 None:intergenic
AGCAAATGGGTTACCAGCAG+GGG 0.580138 1.4:+56289735 None:intergenic
TCGGCCACAACTTGAAAAGA+GGG 0.604417 1.4:+56289703 None:intergenic
TTGTTGAGAACAAAGATGCA+AGG 0.612227 1.4:-56289852 MS.gene036037:CDS
GACGAAAGAGCTGAAGAAGG+TGG 0.629958 1.4:-56289581 MS.gene036037:CDS
GAGCACCTTCGTGAAACACA+AGG 0.665525 1.4:-56289679 MS.gene036037:CDS
TGTGACGAAAGAGCTGAAGA+AGG 0.666095 1.4:-56289584 MS.gene036037:CDS
TTCGTTGGAAGAGCTTCGTG+CGG 0.675452 1.4:-56289485 MS.gene036037:CDS
ATTCACCTTGTGTTTCACGA+AGG 0.675664 1.4:+56289674 None:intergenic
AAGGTGGAGACAATTGACAA+AGG 0.699124 1.4:-56289565 MS.gene036037:CDS
AAACACAAGGTGAATCATCG+AGG 0.729840 1.4:-56289666 MS.gene036037:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATATTTTCATTTTCTGA+AGG + chr1.4:56289687-56289706 None:intergenic 20.0%
! ATCAAAATCAAGATCATCAT+AGG + chr1.4:56289790-56289809 None:intergenic 25.0%
! ATTCTTTCTCTTAGAAAATG+TGG + chr1.4:56289493-56289512 None:intergenic 25.0%
! TTTGTTCTCAACAAATTCAA+TGG + chr1.4:56289457-56289476 None:intergenic 25.0%
!! TATGATGATCTTGATTTTGA+TGG - chr1.4:56289789-56289808 MS.gene036037:CDS 25.0%
!!! ACATTTTCTAAGAGAAAGAA+TGG - chr1.4:56289492-56289511 MS.gene036037:CDS 25.0%
!!! ATGATGATCTTGATTTTGAT+GGG - chr1.4:56289790-56289809 MS.gene036037:CDS 25.0%
ATTCTTTGTAATGCTAGAGT+TGG - chr1.4:56289543-56289562 MS.gene036037:CDS 30.0%
TAAAAAAGTGAAGGCTTCGT+TGG - chr1.4:56289815-56289834 MS.gene036037:CDS 35.0%
TCAAGATCATCATAGGCAAT+AGG + chr1.4:56289783-56289802 None:intergenic 35.0%
TTGTTGAGAACAAAGATGCA+AGG - chr1.4:56289463-56289482 MS.gene036037:CDS 35.0%
!! AATGCTAGAGTTGGTATAGT+TGG - chr1.4:56289552-56289571 MS.gene036037:CDS 35.0%
!! TGATGGGCTTAAAAAAGTGA+AGG - chr1.4:56289806-56289825 MS.gene036037:CDS 35.0%
AAACACAAGGTGAATCATCG+AGG - chr1.4:56289649-56289668 MS.gene036037:CDS 40.0%
AAGGTGGAGACAATTGACAA+AGG - chr1.4:56289750-56289769 MS.gene036037:CDS 40.0%
AGTGCTCGACAAAGAACTTA+TGG - chr1.4:56289707-56289726 MS.gene036037:CDS 40.0%
ATTCACCTTGTGTTTCACGA+AGG + chr1.4:56289644-56289663 None:intergenic 40.0%
GTGCTCGACAAAGAACTTAT+GGG - chr1.4:56289708-56289727 MS.gene036037:CDS 40.0%
!!! TTCTCCCTCTTTTCAAGTTG+TGG - chr1.4:56289608-56289627 MS.gene036037:CDS 40.0%
AGGGAGAACCGAAAGCAAAT+GGG + chr1.4:56289596-56289615 None:intergenic 45.0%
ATAGTTGGATTTACCCCTGC+TGG - chr1.4:56289567-56289586 MS.gene036037:CDS 45.0%
ATCGGCCACAACTTGAAAAG+AGG + chr1.4:56289616-56289635 None:intergenic 45.0%
GCTGGTAACCCATTTGCTTT+CGG - chr1.4:56289585-56289604 MS.gene036037:CDS 45.0%
TCGGCCACAACTTGAAAAGA+GGG + chr1.4:56289615-56289634 None:intergenic 45.0%
TGTGACGAAAGAGCTGAAGA+AGG - chr1.4:56289731-56289750 MS.gene036037:CDS 45.0%
!! AAAGCAAATGGGTTACCAGC+AGG + chr1.4:56289585-56289604 None:intergenic 45.0%
!! AAGCAAATGGGTTACCAGCA+GGG + chr1.4:56289584-56289603 None:intergenic 45.0%
!! TGTTTCACGAAGGTGCTCAT+CGG + chr1.4:56289634-56289653 None:intergenic 45.0%
GACGAAAGAGCTGAAGAAGG+TGG - chr1.4:56289734-56289753 MS.gene036037:CDS 50.0%
GAGCACCTTCGTGAAACACA+AGG - chr1.4:56289636-56289655 MS.gene036037:CDS 50.0%
GAGGGAGAACCGAAAGCAAA+TGG + chr1.4:56289597-56289616 None:intergenic 50.0%
TTCGTTGGAAGAGCTTCGTG+CGG - chr1.4:56289830-56289849 MS.gene036037:CDS 50.0%
!! AGCAAATGGGTTACCAGCAG+GGG + chr1.4:56289583-56289602 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 56289435 56289902 56289435 ID=MS.gene036037
chr1.4 mRNA 56289435 56289902 56289435 ID=MS.gene036037.t1;Parent=MS.gene036037
chr1.4 exon 56289435 56289902 56289435 ID=MS.gene036037.t1.exon1;Parent=MS.gene036037.t1
chr1.4 CDS 56289435 56289902 56289435 ID=cds.MS.gene036037.t1;Parent=MS.gene036037.t1
Gene Sequence

>MS.gene036037

ATGGGTCGTAAAAAAATAGCCATTGAATTTGTTGAGAACAAAGATGCAAGGTATGCCACATTTTCTAAGAGAAAGAATGGTCTTTTTAAGAAAGCAAATGAGTTGTCAATTCTTTGTAATGCTAGAGTTGGTATAGTTGGATTTACCCCTGCTGGTAACCCATTTGCTTTCGGTTCTCCCTCTTTTCAAGTTGTGGCCGATGAGCACCTTCGTGAAACACAAGGTGAATCATCGAGGCAAAATGTCGAGCCTTCAGAAAATGAAAATATCAAAGTGCTCGACAAAGAACTTATGGGTGTGACGAAAGAGCTGAAGAAGGTGGAGACAATTGACAAAGGTAAACTGCCTATTGCCTATGATGATCTTGATTTTGATGGGCTTAAAAAAGTGAAGGCTTCGTTGGAAGAGCTTCGTGCGGATATTGATGCAGCATCAGCTTTGCTTCTCCTTGCAAAGAAACCTATGTGA
Protein sequence

>MS.gene036037.t1

MGRKKIAIEFVENKDARYATFSKRKNGLFKKANELSILCNARVGIVGFTPAGNPFAFGSPSFQVVADEHLRETQGESSRQNVEPSENENIKVLDKELMGVTKELKKVETIDKGKLPIAYDDLDFDGLKKVKASLEELRADIDAASALLLLAKKPM