AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036060.t1 MTR_1g069725 98.932 468 5 0 14 481 1 468 0.0 967
MS.gene036060.t1 MTR_7g074650 53.521 355 157 5 125 475 441 791 1.31e-126 387
MS.gene036060.t1 MTR_4g076020 47.486 358 165 6 125 475 87 428 1.63e-105 321
MS.gene036060.t1 MTR_7g027190 34.872 390 225 10 112 477 290 674 7.76e-64 219
MS.gene036060.t1 MTR_3g065980 33.850 387 220 9 114 475 164 539 3.24e-60 206
MS.gene036060.t1 MTR_4g102790 35.433 381 224 10 115 476 285 662 5.43e-57 201
MS.gene036060.t1 MTR_2g082090 31.019 432 260 14 67 475 162 578 2.52e-49 178
MS.gene036060.t1 MTR_4g077760 32.984 382 214 11 119 475 190 554 2.63e-48 174
MS.gene036060.t1 MTR_5g058860 32.673 404 242 10 102 477 97 498 6.75e-48 172
MS.gene036060.t1 MTR_3g072710 32.161 398 232 12 115 480 113 504 3.72e-47 171
MS.gene036060.t1 MTR_1g029420 32.275 378 221 12 122 475 225 591 2.60e-46 170
MS.gene036060.t1 MTR_8g442410 32.821 390 222 12 114 475 147 524 3.15e-45 166
MS.gene036060.t1 MTR_3g089055 31.915 376 225 11 122 475 198 564 1.90e-44 164
MS.gene036060.t1 MTR_3g089055 31.915 376 225 11 122 475 203 569 2.10e-44 164
MS.gene036060.t1 MTR_1g096030 30.827 399 231 15 112 475 70 458 6.23e-43 158
MS.gene036060.t1 MTR_4g104020 29.070 430 262 13 71 477 112 521 1.79e-42 158
MS.gene036060.t1 MTR_4g133660 30.390 385 234 12 117 477 170 544 1.23e-41 156
MS.gene036060.t1 MTR_2g097410 27.865 384 247 11 116 476 365 741 9.65e-41 155
MS.gene036060.t1 MTR_3g056110 29.973 377 239 12 118 475 171 541 3.55e-40 152
MS.gene036060.t1 MTR_5g094450 28.935 432 278 14 68 475 105 531 1.38e-39 150
MS.gene036060.t1 MTR_5g097480 29.787 376 241 10 118 475 173 543 2.39e-39 150
MS.gene036060.t1 MTR_7g062120 27.751 418 262 14 78 475 342 739 1.81e-37 146
MS.gene036060.t1 MTR_2g034280 28.238 386 251 10 112 475 193 574 3.81e-36 141
MS.gene036060.t1 MTR_4g076140 28.375 437 236 13 114 478 40 471 4.63e-36 139
MS.gene036060.t1 MTR_4g064150 26.492 419 272 13 86 475 321 732 5.13e-36 142
MS.gene036060.t1 MTR_3g022830 26.588 425 245 10 116 478 19 438 8.05e-36 138
MS.gene036060.t1 MTR_4g064120 25.707 389 254 12 114 477 246 624 2.76e-35 139
MS.gene036060.t1 MTR_2g034260 28.351 388 250 11 112 475 200 583 4.40e-35 138
MS.gene036060.t1 MTR_4g064180 25.714 385 254 11 114 473 246 623 7.04e-35 138
MS.gene036060.t1 MTR_2g097310 28.684 380 249 11 114 476 264 638 1.92e-34 137
MS.gene036060.t1 MTR_7g109580 27.441 379 256 9 112 475 179 553 3.43e-34 135
MS.gene036060.t1 MTR_4g064160 28.609 381 244 13 117 476 311 684 1.31e-33 134
MS.gene036060.t1 MTR_2g034250 26.735 389 256 11 112 475 200 584 1.60e-33 134
MS.gene036060.t1 MTR_4g064200 28.385 384 239 14 117 476 279 650 1.66e-33 134
MS.gene036060.t1 MTR_2g026250 26.196 397 265 10 105 477 205 597 1.32e-31 128
MS.gene036060.t1 MTR_2g097467 25.984 381 251 12 116 475 283 653 5.85e-31 127
MS.gene036060.t1 MTR_4g097080 27.056 377 245 12 122 475 133 502 1.10e-30 124
MS.gene036060.t1 MTR_2g097350 27.177 379 254 11 114 475 266 639 2.78e-30 124
MS.gene036060.t1 MTR_2g097390 27.704 379 252 11 114 475 267 640 1.22e-29 122
MS.gene036060.t1 MTR_2g097473 26.247 381 250 13 116 475 283 653 1.11e-28 120
MS.gene036060.t1 MTR_5g015490 27.154 383 243 14 122 475 114 489 1.14e-28 119
MS.gene036060.t1 MTR_5g009080 33.333 204 129 3 114 312 48 249 4.25e-28 117
MS.gene036060.t1 MTR_5g009080 35.172 145 90 4 336 478 338 480 4.16e-16 80.9
MS.gene036060.t1 MTR_2g097380 28.532 361 215 15 129 476 231 561 1.25e-27 116
MS.gene036060.t1 MTR_2g089100 24.627 402 258 10 116 476 46 443 1.73e-27 115
MS.gene036060.t1 MTR_2g097463 25.798 376 256 12 117 475 285 654 1.93e-27 116
MS.gene036060.t1 MTR_8g093070 26.810 373 248 11 118 476 135 496 4.40e-27 114
MS.gene036060.t1 MTR_2g099110 25.714 455 290 17 58 475 7 450 5.61e-26 110
MS.gene036060.t1 MTR_4g026485 25.000 364 234 11 132 477 283 625 1.06e-23 104
MS.gene036060.t1 MTR_7g057230 27.568 370 243 12 123 475 295 656 1.25e-21 98.6
MS.gene036060.t1 MTR_0092s0100 27.273 374 244 15 119 477 369 729 2.57e-21 97.8
MS.gene036060.t1 MTR_0092s0100 27.273 374 244 15 119 477 372 732 2.87e-21 97.8
MS.gene036060.t1 MTR_1g086970 25.220 341 232 11 155 475 140 477 6.02e-21 95.9
MS.gene036060.t1 MTR_6g047750 25.469 373 251 10 123 475 296 661 1.00e-19 92.8
MS.gene036060.t1 MTR_4g095500 23.923 418 245 14 122 475 59 467 1.25e-18 88.6
MS.gene036060.t1 MTR_5g015950 23.389 419 248 17 122 475 35 445 3.27e-18 87.4
MS.gene036060.t1 MTR_3g053270 23.389 419 248 17 122 475 35 445 3.27e-18 87.4
MS.gene036060.t1 MTR_8g077940 24.161 298 204 10 192 477 255 542 2.60e-15 79.0
MS.gene036060.t1 MTR_8g020840 24.041 391 246 12 122 475 171 547 2.91e-15 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036060.t1 AT3G54220 51.392 395 179 6 94 479 263 653 2.50e-129 390
MS.gene036060.t1 AT5G41920 47.185 373 180 7 116 478 37 402 6.54e-112 337
MS.gene036060.t1 AT1G14920 34.218 377 229 11 114 479 164 532 4.45e-58 201
MS.gene036060.t1 AT1G66350 34.595 370 223 9 114 475 147 505 9.03e-57 196
MS.gene036060.t1 AT2G01570 34.127 378 230 10 114 480 216 585 1.25e-56 198
MS.gene036060.t1 AT3G03450 33.333 375 232 11 114 475 175 544 7.93e-56 195
MS.gene036060.t1 AT5G17490 33.602 372 229 12 114 475 152 515 4.49e-53 187
MS.gene036060.t1 AT5G66770 33.422 374 225 13 119 475 217 583 1.28e-50 181
MS.gene036060.t1 AT1G63100 32.817 387 233 11 115 476 245 629 2.78e-50 181
MS.gene036060.t1 AT1G63100 32.817 387 233 11 115 476 270 654 4.82e-50 181
MS.gene036060.t1 AT3G50650 33.631 336 201 10 158 475 210 541 8.34e-44 162
MS.gene036060.t1 AT1G55580 33.784 296 178 7 197 475 150 444 8.99e-43 157
MS.gene036060.t1 AT2G04890 30.811 370 238 10 118 475 49 412 9.52e-43 156
MS.gene036060.t1 AT1G07530 28.362 409 265 13 95 480 366 769 4.61e-38 148
MS.gene036060.t1 AT1G50600 30.319 376 239 10 118 475 155 525 4.72e-38 146
MS.gene036060.t1 AT5G48150 29.491 373 237 11 123 475 123 489 5.09e-38 145
MS.gene036060.t1 AT5G48150 29.491 373 237 11 123 475 123 489 5.09e-38 145
MS.gene036060.t1 AT5G48150 29.491 373 237 11 123 475 123 489 5.09e-38 145
MS.gene036060.t1 AT5G48150 29.491 373 237 11 123 475 123 489 5.09e-38 145
MS.gene036060.t1 AT1G21450 30.024 413 258 12 87 475 187 592 6.38e-38 146
MS.gene036060.t1 AT1G50600 30.319 376 239 10 118 475 226 596 1.32e-37 145
MS.gene036060.t1 AT1G50600 30.319 376 239 10 118 475 230 600 1.46e-37 145
MS.gene036060.t1 AT1G07520 26.753 385 257 9 115 476 147 529 6.69e-36 140
MS.gene036060.t1 AT1G07520 26.753 385 257 9 115 476 147 529 6.69e-36 140
MS.gene036060.t1 AT2G29065 27.877 391 246 11 115 476 245 628 6.71e-36 141
MS.gene036060.t1 AT1G07520 26.753 385 257 9 115 476 312 694 1.11e-35 140
MS.gene036060.t1 AT1G07520 26.753 385 257 9 115 476 311 693 1.16e-35 140
MS.gene036060.t1 AT4G08250 29.487 390 246 13 115 481 100 483 1.25e-35 138
MS.gene036060.t1 AT2G29060 26.913 379 252 11 118 475 280 654 6.50e-34 135
MS.gene036060.t1 AT2G29060 26.913 379 252 11 118 475 317 691 7.21e-34 135
MS.gene036060.t1 AT5G59450 25.840 387 248 13 117 475 222 597 1.48e-33 134
MS.gene036060.t1 AT4G17230 29.178 377 244 10 117 475 153 524 1.61e-32 130
MS.gene036060.t1 AT4G17230 29.178 377 244 10 117 475 153 524 1.61e-32 130
MS.gene036060.t1 AT3G46600 26.893 383 251 11 114 475 204 578 1.36e-31 128
MS.gene036060.t1 AT3G46600 26.893 383 251 11 114 475 172 546 2.24e-31 127
MS.gene036060.t1 AT3G46600 26.933 375 245 11 122 475 4 370 8.19e-31 123
MS.gene036060.t1 AT4G37650 25.831 391 247 14 121 475 145 528 1.90e-28 118
MS.gene036060.t1 AT2G37650 24.403 377 261 11 117 475 330 700 6.55e-27 115
MS.gene036060.t1 AT2G37650 24.403 377 261 11 117 475 342 712 7.80e-27 114
MS.gene036060.t1 AT5G52510 28.125 384 232 13 123 475 269 639 4.24e-26 112
MS.gene036060.t1 AT3G49950 25.191 393 258 12 113 475 21 407 8.30e-24 103
MS.gene036060.t1 AT1G50420 30.769 221 135 5 107 312 35 252 1.01e-23 104
MS.gene036060.t1 AT1G50420 34.483 145 91 4 336 478 339 481 7.82e-17 83.2
MS.gene036060.t1 AT2G45160 25.369 339 221 12 158 477 315 640 9.29e-20 92.8
MS.gene036060.t1 AT4G00150 27.666 347 217 15 147 480 233 558 1.53e-19 92.0
MS.gene036060.t1 AT3G60630 26.471 306 196 10 191 477 328 623 1.95e-19 92.0
MS.gene036060.t1 AT3G13840 24.368 435 275 16 75 475 95 509 8.07e-19 89.7
MS.gene036060.t1 AT4G36710 23.709 426 286 15 78 475 70 484 1.80e-18 88.6

Find 87 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAACCACTATTACTATTA+TGG 0.175209 1.4:+56575177 None:intergenic
GTTTGTATTCTGCTTCTTCT+TGG 0.177052 1.4:-56574086 MS.gene036060:CDS
TACCCTATAGCATGTAAATT+TGG 0.224828 1.4:-56574630 MS.gene036060:CDS
TATTCTGTCCTCCCAAGTTT+AGG 0.241115 1.4:+56575333 None:intergenic
CTTGGACTTGTAGAACTTCT+AGG 0.244624 1.4:-56574068 MS.gene036060:CDS
TAGCATTCATATCATTGATT+TGG 0.267686 1.4:-56574823 MS.gene036060:CDS
ATGATCCAAGTGAATCAAAA+AGG 0.269992 1.4:+56574388 None:intergenic
TTTGAGACTTCTTGAAGAAT+TGG 0.271799 1.4:-56574502 MS.gene036060:CDS
ATTCTGTCCTCCCAAGTTTA+GGG 0.294515 1.4:+56575334 None:intergenic
ATGTTTCCATGTTACAAATT+AGG 0.299869 1.4:-56574596 MS.gene036060:CDS
CCACTGCACATTCCATTAGA+AGG 0.301310 1.4:+56575126 None:intergenic
GAATTTGATAACCCTTCTAA+TGG 0.332684 1.4:-56575138 MS.gene036060:CDS
TCACCAAATTTACATGCTAT+AGG 0.333976 1.4:+56574627 None:intergenic
CACCAAATTTACATGCTATA+GGG 0.337950 1.4:+56574628 None:intergenic
GTGAAGAAAAGTTTAGGCTT+TGG 0.358361 1.4:-56574266 MS.gene036060:CDS
GCCATTGAATTAGCACTCAT+TGG 0.370427 1.4:+56574204 None:intergenic
ATGAGACACTTGCAGTTCAT+TGG 0.379453 1.4:-56574569 MS.gene036060:CDS
TATAGTCTTGCTCAAGTTGA+TGG 0.384763 1.4:-56574138 MS.gene036060:CDS
TGCATAGTGATGATTCTAAC+AGG 0.385974 1.4:-56574362 MS.gene036060:CDS
CATTCTTTGTATGATTCAAC+TGG 0.386760 1.4:-56574540 MS.gene036060:CDS
AGAATAATGAGGTGAGTGAT+TGG 0.398603 1.4:-56575316 MS.gene036060:CDS
CTCAAGTTGATGGCATGTTA+AGG 0.419170 1.4:-56574128 MS.gene036060:CDS
TAAGGATTTGTTTGGATTGG+AGG 0.422635 1.4:+56575383 None:intergenic
GGATAAGGATTTGTTTGGAT+TGG 0.427644 1.4:+56575380 None:intergenic
TTTGTTTCTATGATGAAAGT+AGG 0.430271 1.4:-56575500 None:intergenic
CAAAACCATAATAGTAATAG+TGG 0.439685 1.4:-56575182 MS.gene036060:CDS
AATGTGAAAATTTGATGAAA+GGG 0.441329 1.4:+56574889 None:intergenic
ATCAACAATATATTAGCAAT+TGG 0.455848 1.4:-56574306 MS.gene036060:CDS
TGAAAATCACTCCCTAAACT+TGG 0.455883 1.4:-56575345 MS.gene036060:CDS
GAAGTGGTGAAGAAAAGTTT+AGG 0.462022 1.4:-56574272 MS.gene036060:CDS
GCAATTTCAGTTGAAAATCA+TGG 0.462156 1.4:-56575104 MS.gene036060:CDS
ATGATTCAACTGGACCTGAT+TGG 0.462834 1.4:-56574530 MS.gene036060:CDS
AATGCTATTACAACGGTTCA+CGG 0.473963 1.4:+56574839 None:intergenic
CGGCCTTCAGTTCGAATGAC+CGG 0.476526 1.4:-56574738 MS.gene036060:CDS
AGTGGTTATGAATGTGATCA+AGG 0.478735 1.4:-56575164 MS.gene036060:CDS
ATGGAACTTCTTGTTGAGAC+GGG 0.483246 1.4:-56574702 MS.gene036060:CDS
GACCGGGATGGGAGCATCGA+TGG 0.487077 1.4:-56574721 MS.gene036060:CDS
ATATCATGCAAGGGCTTCAA+TGG 0.488838 1.4:-56574800 MS.gene036060:CDS
ATGGCATGTTAAGGCTTGGT+TGG 0.496635 1.4:-56574119 MS.gene036060:CDS
TCACGGCTTCGAGAATTGCT+TGG 0.498738 1.4:+56574856 None:intergenic
GAATAATGAGGTGAGTGATT+GGG 0.510103 1.4:-56575315 MS.gene036060:CDS
ATGTGTGGATGAATCATGTT+TGG 0.512526 1.4:+56575455 None:intergenic
GGATTTGTTTGGATTGGAGG+TGG 0.513635 1.4:+56575386 None:intergenic
TCACATACTCGCGACTCGAA+TGG 0.516098 1.4:-56574766 MS.gene036060:CDS
TCCAATGAGTGCTAATTCAA+TGG 0.516236 1.4:-56574205 MS.gene036060:CDS
GTAGAACAAGATGTTAACAT+TGG 0.523714 1.4:-56574459 MS.gene036060:CDS
TGAACTGCAAGTGTCTCATT+AGG 0.524179 1.4:+56574573 None:intergenic
AACAATATATTAGCAATTGG+TGG 0.529310 1.4:-56574303 MS.gene036060:CDS
TCAGTTCGAATGACCGGGAT+GGG 0.530352 1.4:-56574732 MS.gene036060:CDS
CACTGCACATTCCATTAGAA+GGG 0.530702 1.4:+56575127 None:intergenic
GAACAAGATGTTAACATTGG+AGG 0.531900 1.4:-56574456 MS.gene036060:CDS
CATACTCGCGACTCGAATGG+AGG 0.534467 1.4:-56574763 MS.gene036060:CDS
ATCCCGGTCATTCGAACTGA+AGG 0.539893 1.4:+56574735 None:intergenic
ATTGATTTGGATATCATGCA+AGG 0.540452 1.4:-56574810 MS.gene036060:CDS
AGAGTGATGAATACATGGCT+TGG 0.543301 1.4:-56574978 MS.gene036060:CDS
ATCCACACATGCATGAAACA+TGG 0.543955 1.4:-56575442 MS.gene036060:CDS
TTCCATCGATGCTCCCATCC+CGG 0.545444 1.4:+56574719 None:intergenic
TCATGTTTGGATTTGCATGA+AGG 0.546629 1.4:+56575468 None:intergenic
AACATGTATTCACCAGCTCA+TGG 0.559958 1.4:-56574162 MS.gene036060:CDS
TGATATGAATGCTATTACAA+CGG 0.565293 1.4:+56574832 None:intergenic
AACAAGATGTTAACATTGGA+GGG 0.567098 1.4:-56574455 MS.gene036060:CDS
CACTTGTAGAGAAGAATGAA+TGG 0.567099 1.4:+56574926 None:intergenic
AAATGTGAAAATTTGATGAA+AGG 0.571299 1.4:+56574888 None:intergenic
GATGGAACTTCTTGTTGAGA+CGG 0.571703 1.4:-56574703 MS.gene036060:CDS
ATTAGGCCTAATTTGTAACA+TGG 0.571929 1.4:+56574590 None:intergenic
AATGCAATGAACCAACAAAA+CGG 0.577957 1.4:+56574421 None:intergenic
GGCCTTCAGTTCGAATGACC+GGG 0.584830 1.4:-56574737 MS.gene036060:CDS
AACAGGAACATTGTTGAACA+TGG 0.588599 1.4:-56574345 MS.gene036060:CDS
TTCAGTTGAAAATCATGGTG+AGG 0.588959 1.4:-56575099 MS.gene036060:CDS
ATGTGAAAATTTGATGAAAG+GGG 0.589901 1.4:+56574890 None:intergenic
TTGATTTGGATATCATGCAA+GGG 0.592147 1.4:-56574809 MS.gene036060:CDS
TTCAGTTCGAATGACCGGGA+TGG 0.594862 1.4:-56574733 MS.gene036060:CDS
TCCACACATGCATGAAACAT+GGG 0.596875 1.4:-56575441 MS.gene036060:CDS
GTTGATGGCATGTTAAGGCT+TGG 0.599004 1.4:-56574123 MS.gene036060:CDS
GAAAATCACTCCCTAAACTT+GGG 0.604095 1.4:-56575344 MS.gene036060:CDS
AATCACTCCCTAAACTTGGG+AGG 0.618126 1.4:-56575341 MS.gene036060:CDS
TTAGTAGAGTGATGAATACA+TGG 0.620787 1.4:-56574983 MS.gene036060:CDS
ATGGTTCTATGATCAATCAA+AGG 0.621623 1.4:+56574945 None:intergenic
ATACTCGCGACTCGAATGGA+GGG 0.625698 1.4:-56574762 MS.gene036060:CDS
GCAAGACTATAACCATGAGC+TGG 0.626630 1.4:+56574150 None:intergenic
TCCCATGTTTCATGCATGTG+TGG 0.627315 1.4:+56575440 None:intergenic
ATTGGTGGACCTAAGAGAAG+TGG 0.635188 1.4:-56574288 MS.gene036060:CDS
CTTGGGAGGACAGAATAATG+AGG 0.642986 1.4:-56575327 MS.gene036060:CDS
CCTTCTAATGGAATGTGCAG+TGG 0.643323 1.4:-56575126 MS.gene036060:CDS
TGGAACTTCTTGTTGAGACG+GGG 0.658302 1.4:-56574701 MS.gene036060:CDS
GTGGTTATGAATGTGATCAA+GGG 0.672291 1.4:-56575163 MS.gene036060:CDS
TCGCGACTCGAATGGAGGGT+CGG 0.673281 1.4:-56574758 MS.gene036060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTGAAAATTTGATGAA+AGG + chr1.4:56574668-56574687 None:intergenic 20.0%
!! AATGTGAAAATTTGATGAAA+GGG + chr1.4:56574667-56574686 None:intergenic 20.0%
!! ATCAACAATATATTAGCAAT+TGG - chr1.4:56575247-56575266 MS.gene036060:CDS 20.0%
! AACAATATATTAGCAATTGG+TGG - chr1.4:56575250-56575269 MS.gene036060:CDS 25.0%
! ATGTGAAAATTTGATGAAAG+GGG + chr1.4:56574666-56574685 None:intergenic 25.0%
! ATGTTTCCATGTTACAAATT+AGG - chr1.4:56574957-56574976 MS.gene036060:CDS 25.0%
! CAAAACCATAATAGTAATAG+TGG - chr1.4:56574371-56574390 MS.gene036060:CDS 25.0%
! CATAACCACTATTACTATTA+TGG + chr1.4:56574379-56574398 None:intergenic 25.0%
! TGATATGAATGCTATTACAA+CGG + chr1.4:56574724-56574743 None:intergenic 25.0%
!! TAGCATTCATATCATTGATT+TGG - chr1.4:56574730-56574749 MS.gene036060:CDS 25.0%
!! TCTACCAAAGTTATGATTTT+TGG + chr1.4:56575079-56575098 None:intergenic 25.0%
!!! ATGGTTTTGAATTAAATCTG+AGG + chr1.4:56574360-56574379 None:intergenic 25.0%
!!! TTATTATCAGAAGTGTTTTG+TGG + chr1.4:56574302-56574321 None:intergenic 25.0%
AACAAGATGTTAACATTGGA+GGG - chr1.4:56575098-56575117 MS.gene036060:CDS 30.0%
AATGCAATGAACCAACAAAA+CGG + chr1.4:56575135-56575154 None:intergenic 30.0%
ATGATCCAAGTGAATCAAAA+AGG + chr1.4:56575168-56575187 None:intergenic 30.0%
CACCAAATTTACATGCTATA+GGG + chr1.4:56574928-56574947 None:intergenic 30.0%
CATTCTTTGTATGATTCAAC+TGG - chr1.4:56575013-56575032 MS.gene036060:CDS 30.0%
GCAATTTCAGTTGAAAATCA+TGG - chr1.4:56574449-56574468 MS.gene036060:CDS 30.0%
GGAACCAAAAATCATAACTT+TGG - chr1.4:56575072-56575091 MS.gene036060:CDS 30.0%
GTAGAACAAGATGTTAACAT+TGG - chr1.4:56575094-56575113 MS.gene036060:CDS 30.0%
TACCCTATAGCATGTAAATT+TGG - chr1.4:56574923-56574942 MS.gene036060:CDS 30.0%
TCACCAAATTTACATGCTAT+AGG + chr1.4:56574929-56574948 None:intergenic 30.0%
TGATCCAAGTGAATCAAAAA+GGG + chr1.4:56575167-56575186 None:intergenic 30.0%
TTAGTAGAGTGATGAATACA+TGG - chr1.4:56574570-56574589 MS.gene036060:CDS 30.0%
! ATCTTTCGAATTTTGCAAGA+AGG - chr1.4:56574879-56574898 MS.gene036060:CDS 30.0%
! ATGGTTCTATGATCAATCAA+AGG + chr1.4:56574611-56574630 None:intergenic 30.0%
! ATTAGGCCTAATTTGTAACA+TGG + chr1.4:56574966-56574985 None:intergenic 30.0%
! GAATTTGATAACCCTTCTAA+TGG - chr1.4:56574415-56574434 MS.gene036060:CDS 30.0%
! TGATTTTCAGTTAGAGGTTT+TGG + chr1.4:56574197-56574216 None:intergenic 30.0%
! TTTGAGACTTCTTGAAGAAT+TGG - chr1.4:56575051-56575070 MS.gene036060:CDS 30.0%
!! ATTGATTTGGATATCATGCA+AGG - chr1.4:56574743-56574762 MS.gene036060:CDS 30.0%
!! GTTTTGGATAAGGATTTGTT+TGG + chr1.4:56574181-56574200 None:intergenic 30.0%
!! TTGATTTGGATATCATGCAA+GGG - chr1.4:56574744-56574763 MS.gene036060:CDS 30.0%
AACAGGAACATTGTTGAACA+TGG - chr1.4:56575208-56575227 MS.gene036060:CDS 35.0%
AATGCTATTACAACGGTTCA+CGG + chr1.4:56574717-56574736 None:intergenic 35.0%
AGAATAATGAGGTGAGTGAT+TGG - chr1.4:56574237-56574256 MS.gene036060:CDS 35.0%
AGTGGTTATGAATGTGATCA+AGG - chr1.4:56574389-56574408 MS.gene036060:CDS 35.0%
ATGTGTGGATGAATCATGTT+TGG + chr1.4:56574101-56574120 None:intergenic 35.0%
CACTTGTAGAGAAGAATGAA+TGG + chr1.4:56574630-56574649 None:intergenic 35.0%
GAAAATCACTCCCTAAACTT+GGG - chr1.4:56574209-56574228 MS.gene036060:CDS 35.0%
GAACAAGATGTTAACATTGG+AGG - chr1.4:56575097-56575116 MS.gene036060:CDS 35.0%
GAAGTGGTGAAGAAAAGTTT+AGG - chr1.4:56575281-56575300 MS.gene036060:CDS 35.0%
GAATAATGAGGTGAGTGATT+GGG - chr1.4:56574238-56574257 MS.gene036060:CDS 35.0%
GTGAAGAAAAGTTTAGGCTT+TGG - chr1.4:56575287-56575306 MS.gene036060:CDS 35.0%
GTGGTTATGAATGTGATCAA+GGG - chr1.4:56574390-56574409 MS.gene036060:CDS 35.0%
GTTTGTATTCTGCTTCTTCT+TGG - chr1.4:56575467-56575486 MS.gene036060:CDS 35.0%
TCATGTTTGGATTTGCATGA+AGG + chr1.4:56574088-56574107 None:intergenic 35.0%
TCCAATGAGTGCTAATTCAA+TGG - chr1.4:56575348-56575367 MS.gene036060:CDS 35.0%
TGAAAATCACTCCCTAAACT+TGG - chr1.4:56574208-56574227 MS.gene036060:CDS 35.0%
TGCATAGTGATGATTCTAAC+AGG - chr1.4:56575191-56575210 MS.gene036060:CDS 35.0%
TTCAGTTGAAAATCATGGTG+AGG - chr1.4:56574454-56574473 MS.gene036060:CDS 35.0%
! AGTCTCAAAGTTTTCCAATC+AGG + chr1.4:56575040-56575059 None:intergenic 35.0%
! GGATAAGGATTTGTTTGGAT+TGG + chr1.4:56574176-56574195 None:intergenic 35.0%
! TAAGGATTTGTTTGGATTGG+AGG + chr1.4:56574173-56574192 None:intergenic 35.0%
! TTTTCTTCACCACTTCTCTT+AGG + chr1.4:56575277-56575296 None:intergenic 35.0%
!! TAACATTGGAGGGTCATTTT+TGG - chr1.4:56575108-56575127 MS.gene036060:CDS 35.0%
!! TATAGTCTTGCTCAAGTTGA+TGG - chr1.4:56575415-56575434 MS.gene036060:CDS 35.0%
!! TCAGCACATGAAGTTTTGTA+AGG + chr1.4:56574518-56574537 None:intergenic 35.0%
!! TCATTTTTGGACCGTTTTGT+TGG - chr1.4:56575121-56575140 MS.gene036060:CDS 35.0%
!!! TCAGTTAGAGGTTTTGGATA+AGG + chr1.4:56574191-56574210 None:intergenic 35.0%
!!! TGCAAGAAATAGTTTTGAGC+AGG - chr1.4:56575324-56575343 MS.gene036060:CDS 35.0%
AACATGTATTCACCAGCTCA+TGG - chr1.4:56575391-56575410 MS.gene036060:CDS 40.0%
AGAGTGATGAATACATGGCT+TGG - chr1.4:56574575-56574594 MS.gene036060:CDS 40.0%
ATATCATGCAAGGGCTTCAA+TGG - chr1.4:56574753-56574772 MS.gene036060:CDS 40.0%
ATCCACACATGCATGAAACA+TGG - chr1.4:56574111-56574130 MS.gene036060:CDS 40.0%
ATGAGACACTTGCAGTTCAT+TGG - chr1.4:56574984-56575003 MS.gene036060:CDS 40.0%
ATGATTCAACTGGACCTGAT+TGG - chr1.4:56575023-56575042 MS.gene036060:CDS 40.0%
ATGGAACTTCTTGTTGAGAC+GGG - chr1.4:56574851-56574870 MS.gene036060:CDS 40.0%
ATTCTGTCCTCCCAAGTTTA+GGG + chr1.4:56574222-56574241 None:intergenic 40.0%
CACTGCACATTCCATTAGAA+GGG + chr1.4:56574429-56574448 None:intergenic 40.0%
CTTGGACTTGTAGAACTTCT+AGG - chr1.4:56575485-56575504 MS.gene036060:CDS 40.0%
GATGGAACTTCTTGTTGAGA+CGG - chr1.4:56574850-56574869 MS.gene036060:CDS 40.0%
GCCATTGAATTAGCACTCAT+TGG + chr1.4:56575352-56575371 None:intergenic 40.0%
GCGAGTATGTGAAAAAAAGC+AGG + chr1.4:56574779-56574798 None:intergenic 40.0%
TATTCTGTCCTCCCAAGTTT+AGG + chr1.4:56574223-56574242 None:intergenic 40.0%
TCCAAGTGAATCAAAAAGGG+TGG + chr1.4:56575164-56575183 None:intergenic 40.0%
TCCACACATGCATGAAACAT+GGG - chr1.4:56574112-56574131 MS.gene036060:CDS 40.0%
TGAACTGCAAGTGTCTCATT+AGG + chr1.4:56574983-56575002 None:intergenic 40.0%
! AGGGAGTGATTTTCAGTTAG+AGG + chr1.4:56574203-56574222 None:intergenic 40.0%
! TCGAATTTTGCAAGAAGGCT+CGG - chr1.4:56574884-56574903 MS.gene036060:CDS 40.0%
!! CTCAAGTTGATGGCATGTTA+AGG - chr1.4:56575425-56575444 MS.gene036060:CDS 40.0%
!! TCCACCCTTTTTGATTCACT+TGG - chr1.4:56575160-56575179 MS.gene036060:CDS 40.0%
AATCACTCCCTAAACTTGGG+AGG - chr1.4:56574212-56574231 MS.gene036060:CDS 45.0%
CCACTGCACATTCCATTAGA+AGG + chr1.4:56574430-56574449 None:intergenic 45.0%
CCTTCTAATGGAATGTGCAG+TGG - chr1.4:56574427-56574446 MS.gene036060:CDS 45.0%
CTTGGGAGGACAGAATAATG+AGG - chr1.4:56574226-56574245 MS.gene036060:CDS 45.0%
GCAAGACTATAACCATGAGC+TGG + chr1.4:56575406-56575425 None:intergenic 45.0%
TCCCATGTTTCATGCATGTG+TGG + chr1.4:56574116-56574135 None:intergenic 45.0%
TGGAACTTCTTGTTGAGACG+GGG - chr1.4:56574852-56574871 MS.gene036060:CDS 45.0%
! ATGGCATGTTAAGGCTTGGT+TGG - chr1.4:56575434-56575453 MS.gene036060:CDS 45.0%
! ATTGGTGGACCTAAGAGAAG+TGG - chr1.4:56575265-56575284 MS.gene036060:CDS 45.0%
! GGATTTGTTTGGATTGGAGG+TGG + chr1.4:56574170-56574189 None:intergenic 45.0%
!! GTTGATGGCATGTTAAGGCT+TGG - chr1.4:56575430-56575449 MS.gene036060:CDS 45.0%
ATACTCGCGACTCGAATGGA+GGG - chr1.4:56574791-56574810 MS.gene036060:CDS 50.0%
ATCCCGGTCATTCGAACTGA+AGG + chr1.4:56574821-56574840 None:intergenic 50.0%
TCACATACTCGCGACTCGAA+TGG - chr1.4:56574787-56574806 MS.gene036060:CDS 50.0%
TCACGGCTTCGAGAATTGCT+TGG + chr1.4:56574700-56574719 None:intergenic 50.0%
TCAGTTCGAATGACCGGGAT+GGG - chr1.4:56574821-56574840 MS.gene036060:CDS 50.0%
TTCAGTTCGAATGACCGGGA+TGG - chr1.4:56574820-56574839 MS.gene036060:CDS 50.0%
CATACTCGCGACTCGAATGG+AGG - chr1.4:56574790-56574809 MS.gene036060:CDS 55.0%
CGGCCTTCAGTTCGAATGAC+CGG - chr1.4:56574815-56574834 MS.gene036060:CDS 55.0%
GGCCTTCAGTTCGAATGACC+GGG - chr1.4:56574816-56574835 MS.gene036060:CDS 55.0%
TTCCATCGATGCTCCCATCC+CGG + chr1.4:56574837-56574856 None:intergenic 55.0%
TCGCGACTCGAATGGAGGGT+CGG - chr1.4:56574795-56574814 MS.gene036060:CDS 60.0%
!! GACCGGGATGGGAGCATCGA+TGG - chr1.4:56574832-56574851 MS.gene036060:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 56574065 56575510 56574065 ID=MS.gene036060
chr1.4 mRNA 56574065 56575510 56574065 ID=MS.gene036060.t1;Parent=MS.gene036060
chr1.4 exon 56574065 56575510 56574065 ID=MS.gene036060.t1.exon1;Parent=MS.gene036060.t1
chr1.4 CDS 56574065 56575510 56574065 ID=cds.MS.gene036060.t1;Parent=MS.gene036060.t1
Gene Sequence

>MS.gene036060

ATGAAAGTAGGATTTGAAGTCCTTCATGCAAATCCAAACATGATTCATCCACACATGCATGAAACATGGGACTATACAATCATTACAAATGACTTATTATTGCCACCTCCAATCCAAACAAATCCTTATCCAAAACCTCTAACTGAAAATCACTCCCTAAACTTGGGAGGACAGAATAATGAGGTGAGTGATTGGGTTGAACACATTACTAAACACTTTGTTGAAGATCAATTACCACAAAACACTTCTGATAATAATAGTTACAATAATCTTCAACAAATTCAAACAAACACCTCAGATTTAATTCAAAACCATAATAGTAATAGTGGTTATGAATGTGATCAAGGGTTGAATTTGATAACCCTTCTAATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCATGGTGAGGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTACAAAACTTCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATTAGTAGAGTGATGAATACATGGCTTGGAGCATGTTCTCCTTTGATTGATCATAGAACCATTCATTCTTCTCTACAAGTGTTCAACAATATTTCCCCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCAATTCTCGAAGCCGTGAACCGTTGTAATAGCATTCATATCATTGATTTGGATATCATGCAAGGGCTTCAATGGCCTGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTCGGCCTTCAGTTCGAATGACCGGGATGGGAGCATCGATGGAACTTCTTGTTGAGACGGGGAAAAATCTTTCGAATTTTGCAAGAAGGCTCGGTTTGTGTTTAGAGTTTTACCCTATAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTACAAATTAGGCCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAAGAATTGGAACCAAAAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGGTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCCACCCTTTTTGATTCACTTGGATCATATTTGCATAGTGATGATTCTAACAGGAACATTGTTGAACATGGTCTTCTATCTAAAGAGATCAACAATATATTAGCAATTGGTGGACCTAAGAGAAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAACTTGTTGCAAGAAATAGTTTTGAGCAGGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTATTCACCAGCTCATGGTTATAGTCTTGCTCAAGTTGATGGCATGTTAAGGCTTGGTTGGAAAGATACTAGTTTGTATTCTGCTTCTTCTTGGACTTGTAGAACTTCTAGGTAG
Protein sequence

>MS.gene036060.t1

MKVGFEVLHANPNMIHPHMHETWDYTIITNDLLLPPPIQTNPYPKPLTENHSLNLGGQNNEVSDWVEHITKHFVEDQLPQNTSDNNSYNNLQQIQTNTSDLIQNHNSNSGYECDQGLNLITLLMECAVAISVENHGEAHRMLLELTQLASPYKTSCAERVVAYFAKAMISRVMNTWLGACSPLIDHRTIHSSLQVFNNISPFIKFSHFTSNQAILEAVNRCNSIHIIDLDIMQGLQWPAFFHILATRMEGRPSVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPKIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDSNRNIVEHGLLSKEINNILAIGGPKRSGEEKFRLWRSELVARNSFEQVPMSANSMAQAQLILNMYSPAHGYSLAQVDGMLRLGWKDTSLYSASSWTCRTSR