AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036124

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036124.t1 MTR_1g070220 90.821 207 16 3 1 204 1 207 3.62e-137 382
MS.gene036124.t1 MTR_7g096530 59.009 222 67 6 1 202 1 218 7.77e-78 232
MS.gene036124.t1 MTR_7g096610 55.414 157 60 2 12 168 5 151 1.00e-48 159
MS.gene036124.t1 MTR_8g036105 63.248 117 43 0 6 122 9 125 2.36e-48 157
MS.gene036124.t1 MTR_1g070205 70.297 101 30 0 15 115 12 112 7.03e-48 157
MS.gene036124.t1 MTR_6g027710 68.317 101 32 0 15 115 40 140 5.38e-46 152
MS.gene036124.t1 MTR_8g036085 67.327 101 33 0 15 115 23 123 5.80e-46 152
MS.gene036124.t1 MTR_7g075230 52.817 142 62 3 13 149 10 151 2.60e-43 144
MS.gene036124.t1 MTR_7g074990 62.376 101 38 0 15 115 20 120 1.02e-42 144
MS.gene036124.t1 MTR_5g080470 62.887 97 36 0 13 109 5 101 2.87e-42 141
MS.gene036124.t1 MTR_4g083680 52.991 117 54 1 1 117 1 116 2.62e-40 135
MS.gene036124.t1 MTR_2g068760 53.982 113 51 1 5 117 3 114 1.27e-39 133
MS.gene036124.t1 MTR_3g031660 48.837 129 65 1 11 139 3 130 4.50e-38 130
MS.gene036124.t1 MTR_6g027700 53.279 122 52 1 15 131 7 128 4.59e-38 130
MS.gene036124.t1 MTR_5g083230 59.406 101 40 1 15 115 6 105 6.12e-38 129
MS.gene036124.t1 MTR_7g033800 54.545 121 54 1 7 127 3 122 6.84e-38 129
MS.gene036124.t1 MTR_6g005070 47.917 144 58 4 12 150 6 137 1.31e-36 125
MS.gene036124.t1 MTR_3g071590 53.509 114 52 1 15 128 8 120 3.20e-36 124
MS.gene036124.t1 MTR_4g105170 62.105 95 35 1 15 109 11 104 8.83e-36 124
MS.gene036124.t1 MTR_3g452660 59.048 105 42 1 11 115 3 106 9.89e-36 127
MS.gene036124.t1 MTR_3g077240 57.407 108 45 1 7 114 2 108 1.35e-35 124
MS.gene036124.t1 MTR_5g017950 58.095 105 43 1 11 115 4 107 3.34e-35 126
MS.gene036124.t1 MTR_6g005080 54.717 106 47 1 12 117 7 111 1.10e-34 120
MS.gene036124.t1 MTR_5g083960 53.465 101 46 1 15 115 39 138 2.82e-34 120
MS.gene036124.t1 MTR_3g073690 57.426 101 42 1 15 115 9 108 7.25e-34 120
MS.gene036124.t1 MTR_3g094690 52.727 110 50 2 15 124 47 154 1.10e-33 120
MS.gene036124.t1 MTR_3g071420 50.442 113 54 2 1 113 1 111 1.59e-33 118
MS.gene036124.t1 MTR_5g083010 51.852 108 50 2 6 113 3 108 2.26e-32 115
MS.gene036124.t1 MTR_2g093310 49.091 110 55 1 8 117 26 134 2.50e-32 115
MS.gene036124.t1 MTR_3g094690 52.727 110 49 3 15 124 47 153 6.02e-32 115
MS.gene036124.t1 MTR_4g060950 48.000 125 62 3 2 125 11 133 7.84e-32 114
MS.gene036124.t1 MTR_8g040900 61.446 83 31 1 11 93 3 84 3.90e-31 113
MS.gene036124.t1 MTR_5g075020 51.261 119 57 1 15 133 43 160 3.25e-30 111
MS.gene036124.t1 MTR_1g095850 51.961 102 48 1 16 117 73 173 4.01e-30 111
MS.gene036124.t1 MTR_5g075020 51.261 119 57 1 15 133 47 164 5.77e-30 110
MS.gene036124.t1 MTR_5g093010 48.000 100 51 1 16 115 6 104 1.44e-27 102
MS.gene036124.t1 MTR_7g028905 46.000 100 53 1 16 115 6 104 4.35e-27 100
MS.gene036124.t1 MTR_8g079660 45.455 99 53 1 15 113 8 105 4.14e-23 93.6
MS.gene036124.t1 MTR_8g079620 41.414 99 57 1 15 113 8 105 5.84e-20 84.7
MS.gene036124.t1 MTR_4g107450 42.718 103 58 1 16 118 11 112 7.97e-20 85.5
MS.gene036124.t1 MTR_2g100020 39.000 100 60 1 16 115 20 118 1.52e-19 84.3
MS.gene036124.t1 MTR_6g011250 45.679 81 42 2 16 95 10 89 1.61e-18 79.7
MS.gene036124.t1 MTR_6g011230 38.776 98 59 1 16 113 12 108 4.14e-18 79.0
MS.gene036124.t1 MTR_6g011200 36.364 99 61 2 16 113 10 107 1.19e-16 75.9
MS.gene036124.t1 MTR_8g079580 33.333 144 77 5 15 152 8 138 1.34e-16 75.5
MS.gene036124.t1 MTR_8g017090 37.864 103 63 1 16 118 13 114 5.20e-16 75.1
MS.gene036124.t1 MTR_4g099230 38.542 96 53 4 16 106 3 97 4.58e-14 67.4
MS.gene036124.t1 MTR_5g085390 33.043 115 75 2 16 129 10 123 2.42e-13 66.6
MS.gene036124.t1 MTR_4g088035 30.682 88 60 1 16 103 7 93 3.77e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036124.t1 AT2G42430 47.773 247 82 7 1 202 1 245 7.80e-64 198
MS.gene036124.t1 AT3G58190 60.317 126 48 1 15 138 11 136 4.96e-48 157
MS.gene036124.t1 AT3G03760 68.868 106 33 0 15 120 51 156 8.81e-48 157
MS.gene036124.t1 AT2G42440 61.345 119 46 0 12 130 4 122 3.73e-47 155
MS.gene036124.t1 AT2G45420 71.429 98 28 0 18 115 40 137 4.76e-46 153
MS.gene036124.t1 AT4G00210 60.526 114 43 1 11 122 5 118 1.16e-45 150
MS.gene036124.t1 AT2G31310 63.107 103 38 0 13 115 5 107 1.08e-44 147
MS.gene036124.t1 AT2G45410 69.388 98 30 0 18 115 19 116 1.26e-44 147
MS.gene036124.t1 AT4G00220 67.347 98 32 0 18 115 20 117 1.93e-44 148
MS.gene036124.t1 AT5G06080 61.905 105 40 0 11 115 3 107 1.44e-43 144
MS.gene036124.t1 AT3G27650 60.000 100 39 1 15 114 39 137 1.56e-38 130
MS.gene036124.t1 AT5G63090 60.194 103 40 1 7 109 3 104 3.46e-36 125
MS.gene036124.t1 AT5G63090 60.194 103 40 1 7 109 3 104 3.46e-36 125
MS.gene036124.t1 AT5G63090 60.194 103 40 1 7 109 3 104 3.46e-36 125
MS.gene036124.t1 AT5G63090 60.194 103 40 1 7 109 3 104 3.46e-36 125
MS.gene036124.t1 AT2G30130 58.416 101 41 1 15 115 8 107 7.44e-36 125
MS.gene036124.t1 AT1G31320 55.208 96 42 1 7 102 5 99 2.62e-34 120
MS.gene036124.t1 AT1G07900 53.398 103 47 1 15 117 33 134 4.54e-34 120
MS.gene036124.t1 AT5G66870 55.238 105 46 1 11 115 3 106 2.34e-33 121
MS.gene036124.t1 AT2G30340 47.934 121 60 2 15 133 53 172 2.83e-33 120
MS.gene036124.t1 AT2G30340 48.333 120 59 2 15 132 52 170 2.98e-33 120
MS.gene036124.t1 AT1G16530 45.968 124 65 2 15 137 14 136 6.18e-33 116
MS.gene036124.t1 AT2G28500 48.696 115 57 2 15 129 55 167 7.74e-33 118
MS.gene036124.t1 AT2G23660 52.885 104 48 1 14 117 4 106 2.43e-32 119
MS.gene036124.t1 AT2G23660 52.885 104 48 1 14 117 4 106 2.43e-32 119
MS.gene036124.t1 AT2G23660 52.885 104 48 1 14 117 4 106 2.43e-32 119
MS.gene036124.t1 AT3G26660 44.248 113 61 2 16 127 6 117 1.51e-31 111
MS.gene036124.t1 AT3G11090 51.429 105 49 2 5 109 2 104 1.41e-30 110
MS.gene036124.t1 AT3G26620 44.340 106 58 1 16 121 6 110 1.45e-30 108
MS.gene036124.t1 AT1G65620 61.176 85 32 1 11 95 5 88 1.06e-29 109
MS.gene036124.t1 AT1G65620 61.176 85 32 1 11 95 5 88 1.06e-29 109
MS.gene036124.t1 AT1G65620 61.176 85 32 1 11 95 5 88 1.06e-29 109
MS.gene036124.t1 AT1G65620 61.176 85 32 1 11 95 5 88 1.06e-29 109
MS.gene036124.t1 AT1G65620 61.176 85 32 1 11 95 5 88 1.06e-29 109
MS.gene036124.t1 AT2G40470 52.632 114 53 1 15 128 20 132 2.34e-29 108
MS.gene036124.t1 AT2G40470 52.632 114 53 1 15 128 45 157 4.44e-29 108
MS.gene036124.t1 AT3G50510 46.465 99 52 1 15 113 12 109 1.94e-23 93.2
MS.gene036124.t1 AT3G50510 46.465 99 52 1 15 113 12 109 1.94e-23 93.2
MS.gene036124.t1 AT1G72980 35.000 120 77 1 12 131 10 128 2.04e-17 77.4
MS.gene036124.t1 AT5G35900 40.000 100 59 1 16 115 6 104 2.33e-17 77.0
MS.gene036124.t1 AT3G47870 35.000 100 64 1 16 115 37 135 1.13e-16 77.0
MS.gene036124.t1 AT3G13850 38.000 100 61 1 16 115 37 135 1.68e-16 75.9
MS.gene036124.t1 AT1G06280 45.570 79 34 2 16 90 25 98 6.23e-16 73.2

Find 39 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTATTATAGATCCTGTTTA+TGG 0.144291 1.3:-50205683 MS.gene036124:CDS
GCAGCTATTCATAAAGTATT+TGG 0.189937 1.3:-50205794 MS.gene036124:CDS
TTCATATTTGTGGGACAAAA+TGG 0.226031 1.3:+50204201 None:intergenic
TAAAAGAATGTCATATGATT+TGG 0.238586 1.3:-50204085 MS.gene036124:CDS
AATGATGGGAAACTATAATT+AGG 0.332280 1.3:-50204037 None:intergenic
TGAATAGCTGCAAATCTTGC+AGG 0.346463 1.3:+50205806 None:intergenic
CATGGACATCCTGAGGATCT+AGG 0.355593 1.3:+50205905 None:intergenic
AAAAGAATGTCATATGATTT+GGG 0.357241 1.3:-50204084 MS.gene036124:CDS
TGATTTATGGCTTCTACAAA+TGG 0.394946 1.3:-50205935 None:intergenic
GATATAGGGTTCATATTTGT+GGG 0.408424 1.3:+50204192 None:intergenic
CCTAGAGGAGACAGAGAACT+TGG 0.411652 1.3:-50204268 MS.gene036124:CDS
CCAAGTTCTCTGTCTCCTCT+AGG 0.426551 1.3:+50204268 None:intergenic
AACTTGGAGAATCAATGGTC+AGG 0.427708 1.3:-50204252 MS.gene036124:CDS
AGAAACATCTCTCGGAATGA+TGG 0.438279 1.3:-50204052 MS.gene036124:CDS
GGCTCTAGCCCTAGATCCTC+AGG 0.441315 1.3:-50205914 MS.gene036124:CDS
GCAATTGCGGCAACAGCATC+GGG 0.447204 1.3:+50205722 None:intergenic
AGATATAGGGTTCATATTTG+TGG 0.449622 1.3:+50204191 None:intergenic
TGTGATACACAACCATAAAC+AGG 0.455984 1.3:+50205671 None:intergenic
TGCTAAAATCAATTGAATCA+AGG 0.464352 1.3:+50204157 None:intergenic
CAGAGAACTTGGAGAATCAA+TGG 0.493895 1.3:-50204257 MS.gene036124:CDS
GCTAAAATCAATTGAATCAA+GGG 0.496109 1.3:+50204158 None:intergenic
TCTTGCAGGTCCTTGTTCAC+AGG 0.500506 1.3:+50205820 None:intergenic
AGCAATTGCGGCAACAGCAT+CGG 0.501002 1.3:+50205721 None:intergenic
GAAACATCTCTCGGAATGAT+GGG 0.517494 1.3:-50204051 MS.gene036124:CDS
ATGGACATCCTGAGGATCTA+GGG 0.518326 1.3:+50205906 None:intergenic
ATTCAGAAGTACACTTTCTA+CGG 0.522613 1.3:+50205864 None:intergenic
AGAAATTTGCATGCCCCACA+TGG 0.523694 1.3:+50205887 None:intergenic
ACTTGGAGAATCAATGGTCA+GGG 0.558166 1.3:-50204251 MS.gene036124:CDS
AGGTAAATTCAGTAGCATCT+TGG 0.559995 1.3:+50205757 None:intergenic
GCATCGGGACGATCATGAGC+AGG 0.573962 1.3:+50205737 None:intergenic
TTGAGCTTCATAAGCAATTG+CGG 0.600657 1.3:+50205709 None:intergenic
GATCCTCAGGATGTCCATGT+GGG 0.601232 1.3:-50205901 MS.gene036124:CDS
AGATCCTCAGGATGTCCATG+TGG 0.614428 1.3:-50205902 MS.gene036124:CDS
AGCACAACTAATGCAAGTGA+AGG 0.620211 1.3:-50204313 MS.gene036124:CDS
GAGCGGCAAGAAACATCTCT+CGG 0.627630 1.3:-50204060 MS.gene036124:CDS
AGTAATTAGTCAAAGCCTAG+AGG 0.635942 1.3:-50204283 MS.gene036124:CDS
TGCCCCACATGGACATCCTG+AGG 0.640571 1.3:+50205898 None:intergenic
TGTCATATGATTTGGGTGAG+CGG 0.650337 1.3:-50204077 MS.gene036124:CDS
ATCCTCAGGATGTCCATGTG+GGG 0.681917 1.3:-50205900 MS.gene036124:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATCATTTTAATTTG+GGG + chr1.3:50205201-50205220 None:intergenic 10.0%
!!! AATCAATTAAAATTTGTTAA+TGG + chr1.3:50205069-50205088 None:intergenic 10.0%
!!! TAATATATAACTTCTTTTTA+AGG - chr1.3:50204680-50204699 MS.gene036124:intron 10.0%
!! TTACTCCTTTAAATAAATAA+CGG - chr1.3:50205460-50205479 MS.gene036124:intron 15.0%
!! AAAAAAGCAAAACAAAATTG+TGG + chr1.3:50204628-50204647 None:intergenic 20.0%
!! AAAAGAATGTCATATGATTT+GGG - chr1.3:50205883-50205902 MS.gene036124:CDS 20.0%
!! AAAATTGTGGAAAAAATTTC+TGG + chr1.3:50204615-50204634 None:intergenic 20.0%
!! ACCTAATCAAAATACAAAAA+CGG + chr1.3:50205622-50205641 None:intergenic 20.0%
!! ATGTACCGTTATTTATTTAA+AGG + chr1.3:50205468-50205487 None:intergenic 20.0%
!! CAAAAACTTCCTATATAAAA+AGG - chr1.3:50204538-50204557 MS.gene036124:intron 20.0%
!! GTCATATTAATTGTTCATAT+GGG - chr1.3:50205560-50205579 MS.gene036124:intron 20.0%
!! TAAAAGAATGTCATATGATT+TGG - chr1.3:50205882-50205901 MS.gene036124:CDS 20.0%
!! TGTCATATTAATTGTTCATA+TGG - chr1.3:50205559-50205578 MS.gene036124:intron 20.0%
!! TGTGTTAAAATGTTAACTAT+AGG + chr1.3:50204357-50204376 None:intergenic 20.0%
!!! AAATATACCTTTTTGTATGA+AGG + chr1.3:50205284-50205303 None:intergenic 20.0%
!!! ACATATATGTGTTCAAATTT+TGG - chr1.3:50204729-50204748 MS.gene036124:intron 20.0%
!!! CAAGAATTACTTAGAATTTT+AGG + chr1.3:50205424-50205443 None:intergenic 20.0%
! AAATATATATTCAACGTTCG+CGG + chr1.3:50205537-50205556 None:intergenic 25.0%
! ACAAAAATCAAAGCAATAGA+GGG + chr1.3:50204937-50204956 None:intergenic 25.0%
! ACAATTTCCTTCATACAAAA+AGG - chr1.3:50205274-50205293 MS.gene036124:intron 25.0%
! ACCATAATTTCACAAAGAAA+AGG + chr1.3:50204970-50204989 None:intergenic 25.0%
! ATAAATAACGGTACATTGAT+TGG - chr1.3:50205472-50205491 MS.gene036124:intron 25.0%
! ATAATTTCACAAAGAAAAGG+AGG + chr1.3:50204967-50204986 None:intergenic 25.0%
! CCTAATCAAAATACAAAAAC+GGG + chr1.3:50205621-50205640 None:intergenic 25.0%
! CTAATCAAAATACAAAAACG+GGG + chr1.3:50205620-50205639 None:intergenic 25.0%
! GCTAAAATCAATTGAATCAA+GGG + chr1.3:50205812-50205831 None:intergenic 25.0%
! TGCTAAAATCAATTGAATCA+AGG + chr1.3:50205813-50205832 None:intergenic 25.0%
!! AAACTGCAACCTTTTTATAT+AGG + chr1.3:50204550-50204569 None:intergenic 25.0%
!! ACCATTTGATAAACAACTTT+TGG + chr1.3:50204997-50205016 None:intergenic 25.0%
!! CCATTTGATAAACAACTTTT+GGG + chr1.3:50204996-50205015 None:intergenic 25.0%
!! TCCTTTTCTTTGTGAAATTA+TGG - chr1.3:50204966-50204985 MS.gene036124:intron 25.0%
!! TTCTTTTATTAGAGTAAGCT+TGG + chr1.3:50205870-50205889 None:intergenic 25.0%
!!! TATTTTTGCTTTACAACAAC+AGG - chr1.3:50204319-50204338 MS.gene036124:CDS 25.0%
!!! TTTCATTCAGTTGTTTTCAA+GGG - chr1.3:50204589-50204608 MS.gene036124:intron 25.0%
AGATATAGGGTTCATATTTG+TGG + chr1.3:50205779-50205798 None:intergenic 30.0%
CACAAAAATCAAAGCAATAG+AGG + chr1.3:50204938-50204957 None:intergenic 30.0%
CCCAAAAGTTGTTTATCAAA+TGG - chr1.3:50204993-50205012 MS.gene036124:intron 30.0%
CGTATTATAGATCCTGTTTA+TGG - chr1.3:50204284-50204303 MS.gene036124:CDS 30.0%
GATATAGGGTTCATATTTGT+GGG + chr1.3:50205778-50205797 None:intergenic 30.0%
TACCTATGTATACAACAACA+GGG + chr1.3:50204807-50204826 None:intergenic 30.0%
TTCATATTTGTGGGACAAAA+TGG + chr1.3:50205769-50205788 None:intergenic 30.0%
TTGTTGTATACATAGGTAGT+AGG - chr1.3:50204809-50204828 MS.gene036124:intron 30.0%
! ATTCAGAAGTACACTTTCTA+CGG + chr1.3:50204106-50204125 None:intergenic 30.0%
! GCAGCTATTCATAAAGTATT+TGG - chr1.3:50204173-50204192 MS.gene036124:CDS 30.0%
!! CTTTCATTCAGTTGTTTTCA+AGG - chr1.3:50204588-50204607 MS.gene036124:intron 30.0%
!! TGGGTTTTATGTTTGACTTA+TGG - chr1.3:50205579-50205598 MS.gene036124:intron 30.0%
!!! CCCGTTTTTGTATTTTGATT+AGG - chr1.3:50205618-50205637 MS.gene036124:intron 30.0%
AGGTAAATTCAGTAGCATCT+TGG + chr1.3:50204213-50204232 None:intergenic 35.0%
AGTAATTAGTCAAAGCCTAG+AGG - chr1.3:50205684-50205703 MS.gene036124:CDS 35.0%
ATCGATCAGTAAGAGTTGTT+TGG - chr1.3:50205169-50205188 MS.gene036124:intron 35.0%
CCTTGTTCACAGGAAAAATA+AGG + chr1.3:50204140-50204159 None:intergenic 35.0%
CTACCTATGTATACAACAAC+AGG + chr1.3:50204808-50204827 None:intergenic 35.0%
GTATACATAGGTAGTAGGTT+TGG - chr1.3:50204814-50204833 MS.gene036124:intron 35.0%
TGTGATACACAACCATAAAC+AGG + chr1.3:50204299-50204318 None:intergenic 35.0%
TTGAGCTTCATAAGCAATTG+CGG + chr1.3:50204261-50204280 None:intergenic 35.0%
! AATAACGGTACATTGATTGG+TGG - chr1.3:50205475-50205494 MS.gene036124:intron 35.0%
! ATTGAATCAAGGGAGCTTTT+AGG + chr1.3:50205802-50205821 None:intergenic 35.0%
! TCACAAAGAAAAGGAGGTAT+TGG + chr1.3:50204961-50204980 None:intergenic 35.0%
!! TACATTGATTGGTGGATTTG+CGG - chr1.3:50205483-50205502 MS.gene036124:intron 35.0%
!!! CCTTATTTTTCCTGTGAACA+AGG - chr1.3:50204137-50204156 MS.gene036124:CDS 35.0%
AACTTGGAGAATCAATGGTC+AGG - chr1.3:50205715-50205734 MS.gene036124:CDS 40.0%
ACTTGGAGAATCAATGGTCA+GGG - chr1.3:50205716-50205735 MS.gene036124:CDS 40.0%
AGAAACATCTCTCGGAATGA+TGG - chr1.3:50205915-50205934 MS.gene036124:CDS 40.0%
AGCACAACTAATGCAAGTGA+AGG - chr1.3:50205654-50205673 MS.gene036124:CDS 40.0%
ATCGACGAGTAAGAGTTGTT+TGG - chr1.3:50205141-50205160 MS.gene036124:intron 40.0%
CAGAGAACTTGGAGAATCAA+TGG - chr1.3:50205710-50205729 MS.gene036124:CDS 40.0%
CTCCCTGTTGTTGTATACAT+AGG - chr1.3:50204802-50204821 MS.gene036124:intron 40.0%
GAAACATCTCTCGGAATGAT+GGG - chr1.3:50205916-50205935 MS.gene036124:CDS 40.0%
TGAATAGCTGCAAATCTTGC+AGG + chr1.3:50204164-50204183 None:intergenic 40.0%
! TGTCATATGATTTGGGTGAG+CGG - chr1.3:50205890-50205909 MS.gene036124:CDS 40.0%
!! AGGGAGCTTTTAGGAGATAT+AGG + chr1.3:50205793-50205812 None:intergenic 40.0%
!! GGGAGCTTTTAGGAGATATA+GGG + chr1.3:50205792-50205811 None:intergenic 40.0%
AGAAATTTGCATGCCCCACA+TGG + chr1.3:50204083-50204102 None:intergenic 45.0%
ATGGACATCCTGAGGATCTA+GGG + chr1.3:50204064-50204083 None:intergenic 45.0%
CGGCGCAAACGTGATATAAA+AGG + chr1.3:50205517-50205536 None:intergenic 45.0%
!!! AAAAATATATCATTTTAATT+TGG + chr1.3:50205203-50205222 None:intergenic 5.0%
!!! AAAATATATCATTTTAATTT+GGG + chr1.3:50205202-50205221 None:intergenic 5.0%
AGATCCTCAGGATGTCCATG+TGG - chr1.3:50204065-50204084 MS.gene036124:CDS 50.0%
AGCAATTGCGGCAACAGCAT+CGG + chr1.3:50204249-50204268 None:intergenic 50.0%
ATCCTCAGGATGTCCATGTG+GGG - chr1.3:50204067-50204086 MS.gene036124:CDS 50.0%
CATGGACATCCTGAGGATCT+AGG + chr1.3:50204065-50204084 None:intergenic 50.0%
CCAAGTTCTCTGTCTCCTCT+AGG + chr1.3:50205702-50205721 None:intergenic 50.0%
CCTAGAGGAGACAGAGAACT+TGG - chr1.3:50205699-50205718 MS.gene036124:CDS 50.0%
GAGCGGCAAGAAACATCTCT+CGG - chr1.3:50205907-50205926 MS.gene036124:CDS 50.0%
GATCCTCAGGATGTCCATGT+GGG - chr1.3:50204066-50204085 MS.gene036124:CDS 50.0%
TCTTGCAGGTCCTTGTTCAC+AGG + chr1.3:50204150-50204169 None:intergenic 50.0%
GCAATTGCGGCAACAGCATC+GGG + chr1.3:50204248-50204267 None:intergenic 55.0%
GCATCGGGACGATCATGAGC+AGG + chr1.3:50204233-50204252 None:intergenic 60.0%
TGCCCCACATGGACATCCTG+AGG + chr1.3:50204072-50204091 None:intergenic 60.0%
! GGCTCTAGCCCTAGATCCTC+AGG - chr1.3:50204053-50204072 MS.gene036124:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 50204038 50205951 50204038 ID=MS.gene036124
chr1.3 mRNA 50204038 50205951 50204038 ID=MS.gene036124.t1;Parent=MS.gene036124
chr1.3 exon 50205649 50205951 50205649 ID=MS.gene036124.t1.exon1;Parent=MS.gene036124.t1
chr1.3 CDS 50205649 50205951 50205649 ID=cds.MS.gene036124.t1;Parent=MS.gene036124.t1
chr1.3 exon 50204038 50204349 50204038 ID=MS.gene036124.t1.exon2;Parent=MS.gene036124.t1
chr1.3 CDS 50204038 50204349 50204038 ID=cds.MS.gene036124.t1;Parent=MS.gene036124.t1
Gene Sequence

>MS.gene036124

ATGGCTTCTACAAATGGCTCTAGCCCTAGATCCTCAGGATGTCCATGTGGGGCATGCAAATTTCTCCGTAGAAAGTGTACTTCTGAATGCATATTTGCACCTTATTTTTCCTGTGAACAAGGACCTGCAAGATTTGCAGCTATTCATAAAGTATTTGGTGCTAGCAATGTTTCCAAGATGCTACTGAATTTACCTGCTCATGATCGTCCCGATGCTGTTGCCGCAATTGCTTATGAAGCTCAAGCTCGTATTATAGATCCTGTTTATGGTTGTGTATCACATATTTTTGCTTTACAACAACAGGTACGCTTTCAAACCTATAGTTAACATTTTAACACAATAGTCACATAGAACTAAATTAATCTTTATTTTACGATCTTCTATTAATAGAGTTAAATATATTCTTTTGAAATTACAAACTCAAATTCTTATACTTGAGCTGACATACGTTAATAGAGAATTTTATTAATGAACTTTGAAAAAATAACAAGCAAATTTTTCAAAAACTTCCTATATAAAAAGGTTGCAGTTTGTAAATTACTACTATATTCTTTCATTCAGTTGTTTTCAAGGGCCAGAAATTTTTTCCACAATTTTGTTTTGCTTTTTTAGTATATATGATGTGAATGAATGTTATATAATTAATATATAACTTCTTTTTAAGGAAATTAATAGTATTTAATTTATACATACATATATGTGTTCAAATTTTGGAATCGATTGAGTCAGATTGATTTTTCATCATACTCATGTCTTGTCTTTTTCTCCCTGTTGTTGTATACATAGGTAGTAGGTTTGGCTGCTATATATTAAGAGAAATGATATTTGTATAATCACTTTTTGACAATTTTTGTGACAACTTTCTCTCTCATACTCACATTATGTTTTTACTTTCTCCCTCTATTGCTTTGATTTTTGTGCCAATACCTCCTTTTCTTTGTGAAATTATGGTTGTCCCAAAAGTTGTTTATCAAATGGTTGTTCAAATAACACAACTCATATATTAAACATCAAGATCAGCTAGCAGTCCATTAACAAATTTTAATTGATTATAAATTTACTTATGTCAATTATCGACTAGTAAGACTTTTCTTTTTAACAAGATCGACGAGTAAGAGTTGTTTGGACAAAATCGATCAGTAAGAGTTGTTTGGACAAAACCCCAAATTAAAATGATATATTTTTTTGTGAGTGTTTAAGTTGTTGTAGTTCGAGAGTAGATCAAAGTGAAAACTCACAATTTCCTTCATACAAAAAGGTATATTTTCTATATAGATACAATTAAAGAAATCTAAATTTTTTAGTACAGTTATAATTAAAACTCACTTTTTTTTTCTTTTACAATTTTCTTTGATTAAAGCAATTCTAGACTTTTTAGTTTTACCTAAAATTCTAAGTAATTCTTGATTTATCTAATTTCAATTACTCCTTTAAATAAATAACGGTACATTGATTGGTGGATTTGCGGATGCGTAACCTTTTATATCACGTTTGCGCCGCGAACGTTGAATATATATTTTTTGTCATATTAATTGTTCATATGGGTTTTATGTTTGACTTATGGTTTTTTAATTATGCACCCCGTTTTTGTATTTTGATTAGGTAGCAAACTTGCAAGCACAACTAATGCAAGTGAAGGCACAACAAGTAATTAGTCAAAGCCTAGAGGAGACAGAGAACTTGGAGAATCAATGGTCAGGGAATGTTGTTAAACAACAATTAATCAATCCATTTTGTCCCACAAATATGAACCCTATATCTCCTAAAAGCTCCCTTGATTCAATTGATTTTAGCAGCTGCAGCATCAATGATGTAATGAGTATACAATGCCAAGCTTACTCTAATAAAAGAATGTCATATGATTTGGGTGAGCGGCAAGAAACATCTCTCGGAATGATGGGAAACTATAATTAG
Protein sequence

>MS.gene036124.t1

MASTNGSSPRSSGCPCGACKFLRRKCTSECIFAPYFSCEQGPARFAAIHKVFGASNVSKMLLNLPAHDRPDAVAAIAYEAQARIIDPVYGCVSHIFALQQQVANLQAQLMQVKAQQVISQSLEETENLENQWSGNVVKQQLINPFCPTNMNPISPKSSLDSIDFSSCSINDVMSIQCQAYSNKRMSYDLGERQETSLGMMGNYN