AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036186

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036186.t1 MTR_1g071360 90.936 342 28 3 1 341 4 343 0.0 616
MS.gene036186.t1 MTR_1g071360 90.208 337 30 3 1 336 1 335 0.0 603
MS.gene036186.t1 MTR_7g095680 54.179 347 113 9 1 315 4 336 2.50e-106 315
MS.gene036186.t1 MTR_1g102860 48.089 314 115 9 17 311 27 311 4.99e-80 247
MS.gene036186.t1 MTR_3g104550 45.000 300 145 5 17 300 33 328 2.18e-75 237
MS.gene036186.t1 MTR_4g077970 50.455 220 90 3 22 224 4 221 1.23e-67 220
MS.gene036186.t1 MTR_5g029680 50.459 218 85 3 28 225 30 244 7.08e-67 218
MS.gene036186.t1 MTR_1g061170 48.387 217 100 3 17 224 36 249 2.71e-60 200
MS.gene036186.t1 MTR_2g100680 42.786 201 105 2 28 221 29 226 1.20e-52 180
MS.gene036186.t1 MTR_6g043060 44.221 199 100 3 30 221 22 216 3.41e-49 167
MS.gene036186.t1 MTR_8g083100 44.221 199 98 4 31 221 23 216 1.25e-47 167
MS.gene036186.t1 MTR_8g105780 47.090 189 82 3 30 200 22 210 2.82e-46 161
MS.gene036186.t1 MTR_8g087540 37.891 256 131 6 30 260 12 264 8.02e-46 160
MS.gene036186.t1 MTR_2g100670 42.105 190 99 2 20 202 27 212 3.01e-45 157
MS.gene036186.t1 MTR_2g100670 42.105 190 99 2 20 202 135 320 3.09e-44 157
MS.gene036186.t1 MTR_6g086805 38.667 225 122 3 30 239 11 234 1.79e-43 153
MS.gene036186.t1 MTR_5g010680 65.263 95 33 0 28 122 22 116 1.85e-42 151
MS.gene036186.t1 MTR_5g017470 41.530 183 63 2 28 166 7 189 3.64e-41 145
MS.gene036186.t1 MTR_0020s0020 63.158 95 35 0 28 122 31 125 4.78e-41 147
MS.gene036186.t1 MTR_1g100777 63.158 95 35 0 28 122 16 110 3.15e-40 144
MS.gene036186.t1 MTR_3g101870 64.078 103 36 1 28 130 22 123 1.00e-39 144
MS.gene036186.t1 MTR_5g089170 43.860 171 65 3 28 168 23 192 7.99e-39 138
MS.gene036186.t1 MTR_7g091370 45.679 162 64 3 21 158 9 170 4.24e-38 136
MS.gene036186.t1 MTR_2g017890 39.560 182 90 4 30 194 15 193 1.82e-36 135
MS.gene036186.t1 MTR_4g088900 38.764 178 90 4 28 193 31 201 2.59e-33 122
MS.gene036186.t1 MTR_1g061170 39.456 147 77 3 87 224 11 154 1.89e-26 108
MS.gene036186.t1 MTR_5g047190 42.857 91 45 2 38 121 1 91 1.51e-16 74.7
MS.gene036186.t1 MTR_4g045757 55.172 58 26 0 30 87 14 71 4.40e-15 70.1
MS.gene036186.t1 MTR_6g044340 30.851 188 111 6 90 267 22 200 3.13e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036186.t1 AT3G22830 49.254 335 125 8 10 300 41 374 8.56e-95 288
MS.gene036186.t1 AT3G51910 52.632 285 89 8 21 300 20 263 5.05e-86 261
MS.gene036186.t1 AT3G63350 44.343 327 115 9 15 331 13 282 1.95e-78 241
MS.gene036186.t1 AT2G26150 50.691 217 96 2 17 222 31 247 1.40e-71 226
MS.gene036186.t1 AT2G26150 50.691 217 96 2 17 222 31 247 1.40e-71 226
MS.gene036186.t1 AT1G32330 50.971 206 81 1 15 200 22 227 4.43e-65 213
MS.gene036186.t1 AT1G32330 50.971 206 81 1 15 200 22 227 4.70e-65 213
MS.gene036186.t1 AT5G43840 42.606 284 141 7 17 289 6 278 1.87e-64 206
MS.gene036186.t1 AT4G17750 44.961 258 109 4 12 239 31 285 3.21e-64 211
MS.gene036186.t1 AT5G16820 48.246 228 92 4 11 221 16 234 1.33e-63 209
MS.gene036186.t1 AT5G16820 48.246 228 92 4 11 221 16 234 1.33e-63 209
MS.gene036186.t1 AT3G02990 48.325 209 88 3 30 221 23 228 1.94e-60 201
MS.gene036186.t1 AT5G03720 47.805 205 87 3 30 220 55 253 2.06e-56 189
MS.gene036186.t1 AT5G03720 47.805 205 87 3 30 220 55 253 2.06e-56 189
MS.gene036186.t1 AT1G67970 46.698 212 98 4 30 229 19 227 1.60e-53 180
MS.gene036186.t1 AT5G54070 41.206 199 111 3 30 223 71 268 4.63e-50 170
MS.gene036186.t1 AT4G13980 43.000 200 104 2 31 223 24 220 3.20e-49 171
MS.gene036186.t1 AT3G24520 42.132 197 94 3 30 222 17 197 1.34e-44 155
MS.gene036186.t1 AT4G36990 42.938 177 63 2 28 166 12 188 5.86e-41 145
MS.gene036186.t1 AT1G46264 37.778 225 81 3 21 187 25 248 7.92e-40 144
MS.gene036186.t1 AT5G62020 62.105 95 36 0 28 122 21 115 6.41e-39 140
MS.gene036186.t1 AT4G11660 62.626 99 36 1 28 126 57 154 8.73e-39 142
MS.gene036186.t1 AT4G18880 43.850 187 93 2 20 194 5 191 1.56e-38 141
MS.gene036186.t1 AT5G45710 36.667 210 122 2 30 228 13 222 5.20e-37 136
MS.gene036186.t1 AT5G45710 36.667 210 122 2 30 228 13 222 5.20e-37 136
MS.gene036186.t1 AT2G41690 62.766 94 35 0 28 121 38 131 6.20e-36 130
MS.gene036186.t1 AT2G26150 44.755 143 68 2 90 221 49 191 4.61e-32 122
MS.gene036186.t1 AT2G26150 44.755 143 68 2 90 221 49 191 4.61e-32 122
MS.gene036186.t1 AT4G18870 52.809 89 37 2 31 117 14 99 1.84e-23 98.6
MS.gene036186.t1 AT4G18870 46.591 88 47 0 30 117 146 233 2.19e-21 92.8
MS.gene036186.t1 AT1G77570 35.227 88 54 2 31 115 27 114 1.30e-11 62.4

Find 66 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTACGTGATTATGAATT+TGG 0.128353 1.3:-51302743 MS.gene036186:CDS
ATGCAGAAATTGATCGTTTA+AGG 0.140595 1.3:-51303063 MS.gene036186:CDS
ATTATTGTGTTTGAAGTATC+TGG 0.159629 1.3:+51303414 None:intergenic
TTCTGTTCCATGAAATTATA+TGG 0.235121 1.3:+51303491 None:intergenic
AACAAGTCCTTCATTTGGTT+GGG 0.266336 1.3:+51303576 None:intergenic
AATTACGTGATTATGAATTT+GGG 0.282722 1.3:-51302742 MS.gene036186:CDS
AACCACTGAGTCAAGAATTT+AGG 0.293001 1.3:-51302490 MS.gene036186:CDS
TTTGCAAATTCCCATCTATC+TGG 0.293795 1.3:+51303181 None:intergenic
CCTTCATTTGGTTGGGGTGG+TGG 0.306285 1.3:+51303583 None:intergenic
ACAACAGACAGAGAAGAAAA+AGG 0.341766 1.3:-51302867 MS.gene036186:CDS
GAGATGGAACATAGGTTAGA+AGG 0.365971 1.3:-51302965 MS.gene036186:CDS
TGCTTGATGATGAAGGGTTC+TGG 0.373815 1.3:-51302601 MS.gene036186:CDS
TCATTTGGTTGGGGTGGTGG+TGG 0.381814 1.3:+51303586 None:intergenic
TCTTCTCTGTCTGTTGTAGT+TGG 0.385092 1.3:+51302873 None:intergenic
ATTTCAACAAGTCCTTCATT+TGG 0.388996 1.3:+51303571 None:intergenic
GTACCAACCATATAATTTCA+TGG 0.396015 1.3:-51303498 MS.gene036186:CDS
TCTTGTGATTCTAGTGCCTC+AGG 0.405629 1.3:+51302638 None:intergenic
TGAATTTGGGGTGTCGGAGT+TGG 0.413715 1.3:-51302729 MS.gene036186:CDS
TGTATCCCAAACCACAAAAC+TGG 0.420129 1.3:+51303462 None:intergenic
CAACAAGTCCTTCATTTGGT+TGG 0.420416 1.3:+51303575 None:intergenic
CCAACACAACCAACTTCAAT+AGG 0.420869 1.3:+51303091 None:intergenic
CTCGGTGAAAGAAGAATACT+TGG 0.431235 1.3:-51303620 MS.gene036186:CDS
TCATTGTTATCTTCAGAAGT+TGG 0.432296 1.3:+51302533 None:intergenic
CCTATTGAAGTTGGTTGTGT+TGG 0.439872 1.3:-51303091 MS.gene036186:CDS
ATAGATGTCTTTGCCCTCTC+AGG 0.446863 1.3:+51303149 None:intergenic
TGGGGTGGTGGTGGAATCGT+TGG 0.458015 1.3:+51303595 None:intergenic
CCTTCTCAGCCTATTGAAGT+TGG 0.458164 1.3:-51303100 MS.gene036186:CDS
GTATCTGGGAAGGAGATGAT+TGG 0.458621 1.3:+51303429 None:intergenic
ACAAGTCCTTCATTTGGTTG+GGG 0.464149 1.3:+51303577 None:intergenic
GGGGAAAATAATGGATAAAG+AGG 0.470921 1.3:-51302672 MS.gene036186:CDS
AGTCCTTCATTTGGTTGGGG+TGG 0.486652 1.3:+51303580 None:intergenic
GTTCCATGAAATTATATGGT+TGG 0.492988 1.3:+51303495 None:intergenic
TGATTATGAATTTGGGGTGT+CGG 0.498346 1.3:-51302735 MS.gene036186:CDS
GCTTGATGATGAAGGGTTCT+GGG 0.499647 1.3:-51302600 MS.gene036186:CDS
AATGTTAGCTATGGAAATGC+AGG 0.499978 1.3:-51302705 MS.gene036186:CDS
TTATTGTGTTTGAAGTATCT+GGG 0.502771 1.3:+51303415 None:intergenic
CAAGGAACTAGACTAGGTAT+TGG 0.504481 1.3:-51302797 MS.gene036186:CDS
ATGTTTAGTACGAAATTTGA+GGG 0.507534 1.3:-51302569 MS.gene036186:CDS
AATGTTTAGTACGAAATTTG+AGG 0.531411 1.3:-51302570 MS.gene036186:CDS
GGAGTTGGAAATGTTAGCTA+TGG 0.532242 1.3:-51302714 MS.gene036186:CDS
ACTAGAATCACAAGAGAAGA+TGG 0.536908 1.3:-51302630 MS.gene036186:CDS
GAGGAACATAAGAAGAAAGA+AGG 0.543697 1.3:-51303125 MS.gene036186:CDS
CCACCACCCCAACCAAATGA+AGG 0.544676 1.3:-51303583 MS.gene036186:CDS
TGTGTTTGAAGTATCTGGGA+AGG 0.547658 1.3:+51303419 None:intergenic
CAAATGAAAGATTCCTGAGA+GGG 0.550958 1.3:-51303162 MS.gene036186:CDS
ATTACGTGATTATGAATTTG+GGG 0.552478 1.3:-51302741 MS.gene036186:CDS
GAAAGAGTGCTTGATGATGA+AGG 0.560834 1.3:-51302608 MS.gene036186:CDS
TGTAGTTGGTGAATGAAGAC+AGG 0.561937 1.3:+51302887 None:intergenic
AGATGGAACATAGGTTAGAA+GGG 0.564470 1.3:-51302964 MS.gene036186:CDS
CCAACTTCAATAGGCTGAGA+AGG 0.568557 1.3:+51303100 None:intergenic
CACACTGTATCTGCTAGAGA+TGG 0.569897 1.3:-51302981 MS.gene036186:CDS
ATCCTAAATTCTTGACTCAG+TGG 0.576729 1.3:+51302488 None:intergenic
AAGAGAAAGCTTGTTGAACA+AGG 0.580615 1.3:-51302815 MS.gene036186:CDS
TCATAATCACGTAATTCTAA+CGG 0.586096 1.3:+51302749 None:intergenic
GGGAAGGAGATGATTGGAGA+AGG 0.595385 1.3:+51303435 None:intergenic
GAGGGCAAAGACATCTATTG+AGG 0.598712 1.3:-51303144 MS.gene036186:CDS
ATAATTTCATGGAACAGAAG+TGG 0.614186 1.3:-51303487 MS.gene036186:CDS
GCAAATGAAAGATTCCTGAG+AGG 0.614961 1.3:-51303163 MS.gene036186:CDS
AGAGAAACACGTGTTGATGT+CGG 0.625455 1.3:-51303038 MS.gene036186:CDS
GTTGAACAAGGAACTAGACT+AGG 0.638387 1.3:-51302803 MS.gene036186:CDS
AATTCTTAGACATATGTACT+CGG 0.641403 1.3:-51303638 None:intergenic
ATCTGCTAGAGATGGAACAT+AGG 0.648151 1.3:-51302973 MS.gene036186:CDS
AGAGGAAGTACATGAACCTG+AGG 0.670115 1.3:-51302654 MS.gene036186:CDS
AAAGAGTGCTTGATGATGAA+GGG 0.670867 1.3:-51302607 MS.gene036186:CDS
GTAGTTGGTGAATGAAGACA+GGG 0.704135 1.3:+51302888 None:intergenic
CATCTCTAGCAGATACAGTG+TGG 0.710812 1.3:+51302982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTACGTGATTATGAATTT+GGG - chr1.3:51303346-51303365 MS.gene036186:intron 20.0%
!! TTACAGTTCAAATTTATTCT+CGG - chr1.3:51302816-51302835 MS.gene036186:CDS 20.0%
! AAAAATTGATCCAGATAGAT+GGG - chr1.3:51302897-51302916 MS.gene036186:CDS 25.0%
! AATGTTTAGTACGAAATTTG+AGG - chr1.3:51303518-51303537 MS.gene036186:CDS 25.0%
! ATGTTTAGTACGAAATTTGA+GGG - chr1.3:51303519-51303538 MS.gene036186:CDS 25.0%
! ATTACGTGATTATGAATTTG+GGG - chr1.3:51303347-51303366 MS.gene036186:intron 25.0%
! GAATTACGTGATTATGAATT+TGG - chr1.3:51303345-51303364 MS.gene036186:intron 25.0%
! TCATAATCACGTAATTCTAA+CGG + chr1.3:51303342-51303361 None:intergenic 25.0%
! TTCTGTTCCATGAAATTATA+TGG + chr1.3:51302600-51302619 None:intergenic 25.0%
!! ATTATTGTGTTTGAAGTATC+TGG + chr1.3:51302677-51302696 None:intergenic 25.0%
!! GTGTTATACAATATTTTGCA+GGG - chr1.3:51302868-51302887 MS.gene036186:CDS 25.0%
!! TGTGTTATACAATATTTTGC+AGG - chr1.3:51302867-51302886 MS.gene036186:CDS 25.0%
!! TTATTGTGTTTGAAGTATCT+GGG + chr1.3:51302676-51302695 None:intergenic 25.0%
ATAATTTCATGGAACAGAAG+TGG - chr1.3:51302601-51302620 MS.gene036186:CDS 30.0%
ATGCAGAAATTGATCGTTTA+AGG - chr1.3:51303025-51303044 MS.gene036186:CDS 30.0%
ATTTCAACAAGTCCTTCATT+TGG + chr1.3:51302520-51302539 None:intergenic 30.0%
GAAAAATTGATCCAGATAGA+TGG - chr1.3:51302896-51302915 MS.gene036186:CDS 30.0%
GTACCAACCATATAATTTCA+TGG - chr1.3:51302590-51302609 MS.gene036186:CDS 30.0%
GTTCCATGAAATTATATGGT+TGG + chr1.3:51302596-51302615 None:intergenic 30.0%
TCATTGTTATCTTCAGAAGT+TGG + chr1.3:51303558-51303577 None:intergenic 30.0%
!! ATGTTTTCTCATACTGATTG+TGG - chr1.3:51302841-51302860 MS.gene036186:CDS 30.0%
!! CTACATCAAATGTTTTTGTG+AGG + chr1.3:51302558-51302577 None:intergenic 30.0%
!! TCAAATGTTTTTGTGAGGAA+TGG + chr1.3:51302553-51302572 None:intergenic 30.0%
!!! AAGCTTTCTCTTTTTTGTCA+TGG + chr1.3:51303265-51303284 None:intergenic 30.0%
AACAAGTCCTTCATTTGGTT+GGG + chr1.3:51302515-51302534 None:intergenic 35.0%
AACCACTGAGTCAAGAATTT+AGG - chr1.3:51303598-51303617 MS.gene036186:CDS 35.0%
AATGTTAGCTATGGAAATGC+AGG - chr1.3:51303383-51303402 MS.gene036186:CDS 35.0%
ACAACAGACAGAGAAGAAAA+AGG - chr1.3:51303221-51303240 MS.gene036186:intron 35.0%
ACTAGAATCACAAGAGAAGA+TGG - chr1.3:51303458-51303477 MS.gene036186:CDS 35.0%
AGATGGAACATAGGTTAGAA+GGG - chr1.3:51303124-51303143 MS.gene036186:CDS 35.0%
ATCCTAAATTCTTGACTCAG+TGG + chr1.3:51303603-51303622 None:intergenic 35.0%
CAAATGAAAGATTCCTGAGA+GGG - chr1.3:51302926-51302945 MS.gene036186:CDS 35.0%
GAGGAACATAAGAAGAAAGA+AGG - chr1.3:51302963-51302982 MS.gene036186:CDS 35.0%
TGATCCTAATGTCTCTATCT+AGG - chr1.3:51302759-51302778 MS.gene036186:CDS 35.0%
TTTGCAAATTCCCATCTATC+TGG + chr1.3:51302910-51302929 None:intergenic 35.0%
! TGATTATGAATTTGGGGTGT+CGG - chr1.3:51303353-51303372 MS.gene036186:intron 35.0%
!! AAAGAGTGCTTGATGATGAA+GGG - chr1.3:51303481-51303500 MS.gene036186:CDS 35.0%
!! AAGAGAAAGCTTGTTGAACA+AGG - chr1.3:51303273-51303292 MS.gene036186:intron 35.0%
!! GGGGAAAATAATGGATAAAG+AGG - chr1.3:51303416-51303435 MS.gene036186:CDS 35.0%
!! TTTTGGAAGGGGGAAAATAA+TGG - chr1.3:51303407-51303426 MS.gene036186:CDS 35.0%
ACAAGTCCTTCATTTGGTTG+GGG + chr1.3:51302514-51302533 None:intergenic 40.0%
ATCTGCTAGAGATGGAACAT+AGG - chr1.3:51303115-51303134 MS.gene036186:CDS 40.0%
CAACAAGTCCTTCATTTGGT+TGG + chr1.3:51302516-51302535 None:intergenic 40.0%
CAAGGAACTAGACTAGGTAT+TGG - chr1.3:51303291-51303310 MS.gene036186:intron 40.0%
CCAACACAACCAACTTCAAT+AGG + chr1.3:51303000-51303019 None:intergenic 40.0%
CTCGGTGAAAGAAGAATACT+TGG - chr1.3:51302468-51302487 MS.gene036186:CDS 40.0%
CTGACCTAGATAGAGACATT+AGG + chr1.3:51302766-51302785 None:intergenic 40.0%
GAGATGGAACATAGGTTAGA+AGG - chr1.3:51303123-51303142 MS.gene036186:CDS 40.0%
GCAAATGAAAGATTCCTGAG+AGG - chr1.3:51302925-51302944 MS.gene036186:CDS 40.0%
GGAGTTGGAAATGTTAGCTA+TGG - chr1.3:51303374-51303393 MS.gene036186:intron 40.0%
GTTGAACAAGGAACTAGACT+AGG - chr1.3:51303285-51303304 MS.gene036186:intron 40.0%
TCTTCTCTGTCTGTTGTAGT+TGG + chr1.3:51303218-51303237 None:intergenic 40.0%
TGTATCCCAAACCACAAAAC+TGG + chr1.3:51302629-51302648 None:intergenic 40.0%
! AGAGAAACACGTGTTGATGT+CGG - chr1.3:51303050-51303069 MS.gene036186:CDS 40.0%
! CCTATTGAAGTTGGTTGTGT+TGG - chr1.3:51302997-51303016 MS.gene036186:CDS 40.0%
! GCTATGGAAATGCAGGTTTT+TGG - chr1.3:51303390-51303409 MS.gene036186:CDS 40.0%
! GTTTTTGTGAGGAATGGTTG+TGG + chr1.3:51302547-51302566 None:intergenic 40.0%
! TGTGTTTGAAGTATCTGGGA+AGG + chr1.3:51302672-51302691 None:intergenic 40.0%
!! AAATGCAGGTTTTTGGAAGG+GGG - chr1.3:51303397-51303416 MS.gene036186:CDS 40.0%
!! GAAAGAGTGCTTGATGATGA+AGG - chr1.3:51303480-51303499 MS.gene036186:CDS 40.0%
!! GAAATGCAGGTTTTTGGAAG+GGG - chr1.3:51303396-51303415 MS.gene036186:CDS 40.0%
!! GGAAATGCAGGTTTTTGGAA+GGG - chr1.3:51303395-51303414 MS.gene036186:CDS 40.0%
!! GTAGTTGGTGAATGAAGACA+GGG + chr1.3:51303203-51303222 None:intergenic 40.0%
!! TGGAAATGCAGGTTTTTGGA+AGG - chr1.3:51303394-51303413 MS.gene036186:CDS 40.0%
!! TGTAGTTGGTGAATGAAGAC+AGG + chr1.3:51303204-51303223 None:intergenic 40.0%
!!! TCTCTTTTTTGTCATGGTCG+CGG + chr1.3:51303259-51303278 None:intergenic 40.0%
ATAGATGTCTTTGCCCTCTC+AGG + chr1.3:51302942-51302961 None:intergenic 45.0%
CACACTGTATCTGCTAGAGA+TGG - chr1.3:51303107-51303126 MS.gene036186:CDS 45.0%
CATCTCTAGCAGATACAGTG+TGG + chr1.3:51303109-51303128 None:intergenic 45.0%
CCAACTTCAATAGGCTGAGA+AGG + chr1.3:51302991-51303010 None:intergenic 45.0%
CCTTCTCAGCCTATTGAAGT+TGG - chr1.3:51302988-51303007 MS.gene036186:CDS 45.0%
GAGGGCAAAGACATCTATTG+AGG - chr1.3:51302944-51302963 MS.gene036186:CDS 45.0%
GTATCTGGGAAGGAGATGAT+TGG + chr1.3:51302662-51302681 None:intergenic 45.0%
TCTTGTGATTCTAGTGCCTC+AGG + chr1.3:51303453-51303472 None:intergenic 45.0%
! AGAGGAAGTACATGAACCTG+AGG - chr1.3:51303434-51303453 MS.gene036186:CDS 45.0%
!! GCTTGATGATGAAGGGTTCT+GGG - chr1.3:51303488-51303507 MS.gene036186:CDS 45.0%
!! TGCTTGATGATGAAGGGTTC+TGG - chr1.3:51303487-51303506 MS.gene036186:CDS 45.0%
!! TGGCACCAGTTTTGTGGTTT+GGG - chr1.3:51302621-51302640 MS.gene036186:CDS 45.0%
AGTCCTTCATTTGGTTGGGG+TGG + chr1.3:51302511-51302530 None:intergenic 50.0%
GGGAAGGAGATGATTGGAGA+AGG + chr1.3:51302656-51302675 None:intergenic 50.0%
! CAGAAGTGGCACCAGTTTTG+TGG - chr1.3:51302615-51302634 MS.gene036186:CDS 50.0%
!! GTGGCACCAGTTTTGTGGTT+TGG - chr1.3:51302620-51302639 MS.gene036186:CDS 50.0%
!! TGAATTTGGGGTGTCGGAGT+TGG - chr1.3:51303359-51303378 MS.gene036186:intron 50.0%
CCACCACCCCAACCAAATGA+AGG - chr1.3:51302505-51302524 MS.gene036186:CDS 55.0%
CCTTCATTTGGTTGGGGTGG+TGG + chr1.3:51302508-51302527 None:intergenic 55.0%
! TCATTTGGTTGGGGTGGTGG+TGG + chr1.3:51302505-51302524 None:intergenic 55.0%
!! TGGGGTGGTGGTGGAATCGT+TGG + chr1.3:51302496-51302515 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 51302463 51303647 51302463 ID=MS.gene036186
chr1.3 mRNA 51302463 51303647 51302463 ID=MS.gene036186.t1;Parent=MS.gene036186
chr1.3 exon 51303381 51303647 51303381 ID=MS.gene036186.t1.exon1;Parent=MS.gene036186.t1
chr1.3 CDS 51303381 51303647 51303381 ID=cds.MS.gene036186.t1;Parent=MS.gene036186.t1
chr1.3 exon 51302463 51303221 51302463 ID=MS.gene036186.t1.exon2;Parent=MS.gene036186.t1
chr1.3 CDS 51302463 51303221 51302463 ID=cds.MS.gene036186.t1;Parent=MS.gene036186.t1
Gene Sequence

>MS.gene036186

ATGTACTCGGTGAAAGAAGAATACTTGGAACCAACGATTCCACCACCACCCCAACCAAATGAAGGACTTGTTGAAATTAGACCACAACCATTCCTCACAAAAACATTTGATGTAGTTGATGATCAAAGTACCAACCATATAATTTCATGGAACAGAAGTGGCACCAGTTTTGTGGTTTGGGATACACATGCCTTCTCCAATCATCTCCTTCCCAGATACTTCAAACACAATAATTTCTCAAGTTTTGTCAGACAATTAAACACTTATGTAAGTACTACGTACTCTCTAGATACACATGATCCTAATGTCTCTATCTAGGTCAGATTTTAAAACATTGCTTATATAGTAAGTAATTACAGTTCAAATTTATTCTCGGCTATGTTTTCTCATACTGATTGTGGACTTGTGTTATACAATATTTTGCAGGGATTTAGAAAAATTGATCCAGATAGATGGGAATTTGCAAATGAAAGATTCCTGAGAGGGCAAAGACATCTATTGAGGAACATAAGAAGAAAGAAGGTACCTTCTCAGCCTATTGAAGTTGGTTGTGTTGGACTAGATGCAGAAATTGATCGTTTAAGGCAAGAGAAACACGTGTTGATGTCGGAGCTTGTGAGTCTTAGAAAGCAGCAATATGATACCACACTGTATCTGCTAGAGATGGAACATAGGTTAGAAGGGATAGAAATCAATCAGAAGAAAATGATGTCTTTCTTAGCTAGAGCTATGAAAAACCCTGTCTTCATTCACCAACTACAACAGACAGAGAAGAAAAAGGAGCTTGAAGAATCCGCGACCATGACAAAAAAGAGAAAGCTTGTTGAACAAGGAACTAGACTAGGTATTGGACAATCAAGCAGTGTTAAAGTTGAGCCGTTAGAATTACGTGATTATGAATTTGGGGTGTCGGAGTTGGAAATGTTAGCTATGGAAATGCAGGTTTTTGGAAGGGGGAAAATAATGGATAAAGAGGAAGTACATGAACCTGAGGCACTAGAATCACAAGAGAAGATGGAAAGAGTGCTTGATGATGAAGGGTTCTGGGAAGATCTAATGTTTAGTACGAAATTTGAGGGTAGATTTGACATTCCAACTTCTGAAGATAACAATGAGAATGAAGATGATTCAAGTGAACCACTGAGTCAAGAATTTAGGATTAACTCTTTTCATTCAGTTCACTAG
Protein sequence

>MS.gene036186.t1

MYSVKEEYLEPTIPPPPQPNEGLVEIRPQPFLTKTFDVVDDQSTNHIISWNRSGTSFVVWDTHAFSNHLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANERFLRGQRHLLRNIRRKKVPSQPIEVGCVGLDAEIDRLRQEKHVLMSELVSLRKQQYDTTLYLLEMEHRLEGIEINQKKMMSFLARAMKNPVFIHQLQQTEKKKELEESATMTKKRKLVEQGTRLGIGQSSSVKVEPLELRDYEFGVSELEMLAMEMQVFGRGKIMDKEEVHEPEALESQEKMERVLDDEGFWEDLMFSTKFEGRFDIPTSEDNNENEDDSSEPLSQEFRINSFHSVH