AlfalfaGEDB | MS.gene03620

M. sativa cultivar XinJiangDaYe / MS.gene03620

KEGG: K08850
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004672 GO:0005488 GO:0005524 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0015923 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016798 GO:0017076 GO:0019318 GO:0019538 GO:0030246 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF07748.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03620.t1	XP_013462066.1	90.6	256	21	2	39	294	15	267	6.50E-123	450.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03620.t1	Q9M077	81.0	258	42	3	39	294	9	261	3.6e-114	412.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03620.t1	A0A072V349	90.6	256	21	2	39	294	15	267	4.7e-123	450.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03620.t1	MTR_3g110405	91.111	270	21	2	25	294	1	267	3.68e-178	496
MS.gene03620.t1	MTR_8g035890	60.484	248	91	3	49	294	4	246	2.16e-100	298
MS.gene03620.t1	MTR_8g040300	60.246	244	90	3	53	294	2	240	3.93e-99	295
MS.gene03620.t1	MTR_1g103760	36.500	200	121	2	57	251	8	206	2.02e-37	140
MS.gene03620.t1	MTR_4g035835	31.597	288	154	7	43	294	743	1023	2.86e-36	140
MS.gene03620.t1	MTR_5g069000	31.250	288	155	7	43	294	747	1027	3.33e-36	140
MS.gene03620.t1	MTR_4g114670	34.804	204	130	1	55	255	5	208	4.35e-36	135
MS.gene03620.t1	MTR_4g006970	33.068	251	158	4	49	294	8	253	5.01e-36	136
MS.gene03620.t1	MTR_5g067150	33.831	201	130	1	58	255	6	206	5.72e-36	134
MS.gene03620.t1	MTR_3g072320	37.688	199	116	2	55	248	6	201	5.77e-36	135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03620.t1	AT2G25880	80.000	270	39	3	25	294	1	255	1.53e-152	431
MS.gene03620.t1	AT4G32830	79.412	272	43	4	25	294	1	261	3.00e-152	430
MS.gene03620.t1	AT2G25880	80.000	270	39	3	25	294	62	316	2.03e-151	430
MS.gene03620.t1	AT2G25880	83.333	252	39	2	43	294	20	268	3.15e-151	428
MS.gene03620.t1	AT2G25880	68.519	270	38	4	25	294	1	223	2.51e-122	353
MS.gene03620.t1	AT2G45490	55.859	256	106	3	41	294	2	252	3.21e-98	291
MS.gene03620.t1	AT2G45490	55.859	256	106	3	41	294	2	252	1.03e-97	291
MS.gene03620.t1	AT5G21326	31.310	313	180	8	51	356	5	289	2.66e-39	145
MS.gene03620.t1	AT4G24400	34.597	211	131	2	58	261	6	216	6.89e-38	140
MS.gene03620.t1	AT4G24400	34.597	211	131	2	58	261	6	216	1.04e-37	140

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Find 83 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGAGAACCTTCTTAT+TGG	0.231506	3.4:+33788435	MS.gene03620:CDS
AACCTGGCTGATGAGGTCTT+TGG	0.484063	3.4:-33789082	None:intergenic
AACTTAAGATAGCGGACTTT+GGG	0.378591	3.4:+33788565	MS.gene03620:CDS
AAGAAACGATTGGTTTAGGA+GGG	0.596930	3.4:-33789053	None:intergenic
AATCAATTCATGGATATACC+AGG	0.656383	3.4:+33789500	MS.gene03620:CDS
ACATACCCATCTCAGGTGGA+AGG	0.642525	3.4:-33788641	None:intergenic
ACCCAAAGGTGAACTTTACA+AGG	0.580757	3.4:+33788098	MS.gene03620:CDS
ACCGTATGGTGTTGTTGATG+AGG	0.580326	3.4:-33786115	None:intergenic
ACCTTCTCGTTGAAGTTGAT+GGG	0.460309	3.4:-33789341	None:intergenic
ACTCATAGCAAAGGACACCA+AGG	0.691016	3.4:-33788785	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTGGAATCTGTTAAG+AGG	+	chr3.4:33789657-33789676	MS.gene03620:intron	30.0%
AAATACAATTACGAAGGTGA+AGG	-	chr3.4:33787279-33787298	None:intergenic	30.0%
AACATTCTGATACTTATAGG+AGG	+	chr3.4:33788841-33788860	MS.gene03620:intron	30.0%
AAGTAACCTCCTACATAAAA+GGG	-	chr3.4:33789971-33789990	None:intergenic	30.0%
AATACAATTACGAAGGTGAA+GGG	-	chr3.4:33787278-33787297	None:intergenic	30.0%
AATCAATTCATGGATATACC+AGG	+	chr3.4:33789500-33789519	MS.gene03620:CDS	30.0%
AGCTACGAATTTCAAATCTA+AGG	+	chr3.4:33787314-33787333	MS.gene03620:intron	30.0%
ATGAATGATTGATTACCGTA+TGG	-	chr3.4:33786132-33786151	None:intergenic	30.0%
ATTGAACAGATGTAAAAACC+TGG	-	chr3.4:33789101-33789120	None:intergenic	30.0%
CATAAAGAAACTCATAGCAA+AGG	-	chr3.4:33788797-33788816	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	33786013	33790184	33786013	ID=MS.gene03620
chr3.4	mRNA	33786013	33790184	33786013	ID=MS.gene03620.t1;Parent=MS.gene03620
chr3.4	exon	33786013	33786135	33786013	ID=MS.gene03620.t1.exon1;Parent=MS.gene03620.t1
chr3.4	CDS	33786013	33786135	33786013	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33787501	33787623	33787501	ID=MS.gene03620.t1.exon2;Parent=MS.gene03620.t1
chr3.4	CDS	33787501	33787623	33787501	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33787819	33787965	33787819	ID=MS.gene03620.t1.exon3;Parent=MS.gene03620.t1
chr3.4	CDS	33787819	33787965	33787819	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33788069	33788164	33788069	ID=MS.gene03620.t1.exon4;Parent=MS.gene03620.t1
chr3.4	CDS	33788069	33788164	33788069	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33788369	33788464	33788369	ID=MS.gene03620.t1.exon5;Parent=MS.gene03620.t1
chr3.4	CDS	33788369	33788464	33788369	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33788561	33788661	33788561	ID=MS.gene03620.t1.exon6;Parent=MS.gene03620.t1
chr3.4	CDS	33788561	33788661	33788561	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33788746	33788818	33788746	ID=MS.gene03620.t1.exon7;Parent=MS.gene03620.t1
chr3.4	CDS	33788746	33788818	33788746	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33788979	33789101	33788979	ID=MS.gene03620.t1.exon8;Parent=MS.gene03620.t1
chr3.4	CDS	33788979	33789101	33788979	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33789299	33789361	33789299	ID=MS.gene03620.t1.exon9;Parent=MS.gene03620.t1
chr3.4	CDS	33789299	33789361	33789299	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33789450	33789521	33789450	ID=MS.gene03620.t1.exon10;Parent=MS.gene03620.t1
chr3.4	CDS	33789450	33789521	33789450	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33789765	33789812	33789765	ID=MS.gene03620.t1.exon11;Parent=MS.gene03620.t1
chr3.4	CDS	33789765	33789812	33789765	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1
chr3.4	exon	33790173	33790184	33790173	ID=MS.gene03620.t1.exon12;Parent=MS.gene03620.t1
chr3.4	CDS	33790173	33790184	33790173	ID=cds.MS.gene03620.t1;Parent=MS.gene03620.t1

Gene Sequence

>MS.gene03620

ATGGAGCTGCATTCATCTTCATCGCTTTCTTCTATTTCAACAAAAACCTCTCTCTCTCTCTCTGAGATCGATATGGCCATCGCAACAGAGACTCAACCTCAGCCTCATCAACAACACCATACGGTAATCAATCATTCATTCATTCATTTCTAGGGTTTTTCCATTTTCCCCTCTTTTATTTTTATTATTATTTTATCATTCGATTAATCAATTAATCACCGCATTCTATTCACCCCCAAACCACCTCACAAACCCAATCAAGCCCTTCAAACTCCTATATCAAACCATCGATCTCTCAATCTCACAAACAATCGAACTCTTAATCTCAAAACACAAAATCAGATCTGATTCATTCCCCCAATCACATCCACCGTCGAACCCTTCTTTCAATCCCGTCGACGACGCTAACATTCGATGATGGTTGATTCTTTCAACGATGAACTTGTATGTTGTTTTATTTTTTATTTTGTTGGGTAATGGGTGTTGATTAATTTCGTGTTTTTGTTAGTGGTTTCTTGATCGATCTTGTGTTATGGGTTTTGCAGGAACGTGAATCGGAGGAACTTGAACGGAGGATCTCATGTTATGGGTTTTGCAGCAAACAATTTTTTTTTGCTGTGATTTCAAAGTTATTAGTTGGGGTGAATTGTAAATGCATTTTCCTCCTTGTCTGATGAAATTATCCCAAAGAATGAAGGACATCCTTGCGTTCCAACTCCATGGGAGTGGGTGAATTGTAGTACTGCTATACCTGCAAGAATTACAAATATGTAAAGTCTCCACACCTTTATGTTTGCACTTTTATTCCATGCTAACTTCTAGTCTAGCAAATTCTGTGAATAAGTCATCTATGGCTTATGTTTTTAAAACACATTAGAATTTTGATTTCCAAAAGTTTATACTCTAGAGTGTGAGATACCGATGTAGTTATATTCAAGAAAAACATAAGACATAAGTCAGAAGCATGATGAAAAATTGTAGGCAAATGTTTCTATTGTTTGCATAACAACATAACATTTTGCCATGGTAAATATTTTCAAGTTAAAGTAGTACGGGTTTTTACTGGTTACAATACCTTGTATTAGAAACTTGTCAGGAAGGAATTTGACCAGTGAAATCCCACGAGCTCAACAACATGGAAGCCTTGACAGAATTGTAAATAAAACATTCTTCAAAACAAAAAATGATTTTATTTATATTTTTTATTTTAGCTTCGATTTATTATTATTATTATTCTTGATTTCATTTGAAACGAATTTTTCCCCTTCACCTTCGTAATTGTATTTAATTTCTCAACAATTAGCTACGAATTTCAAATCTAAGGAGGTTGAAAACCTAGCCAGAGACGTTGATGCTTAAAATCGTGTTCATTGTTAACAAGATCTCATCCTATTGTTTAGATTCATAGATATTTCCTATTGTTAATATCAAATTGTGATTGTTTTCAACAAGATCTGATGGTATCATAATGTTCATTTTTCGTTGCAGGCTTCTTCGAAGGTATCAGGTTCAGCTAAGGATCAAAGAAGGTGGATTATAAATGATTTTGATATTGGAAAACCTCTTGGTAGGGGCAAATTCGGCCATGTCTATTTGGCCAGTGAAAAAACTGTGTGCTTCTTTTTTCCTTCTTCCCATTCAAAATTATTCAATTACATGTGGCTGATGTTGAATTTATGAATCTGAAATTATCGTAATTTCATTTGTTATTGTTGTTGATTTGTGCTGGTTATTTTTCTGTTTTTCTTTACATTGTTTTTATAATTGTGTTTATTAAAATGTGAAATGTGATATTATATGATACAGAGTAATCATATCGTTGCGTTGAAAGTACTCTTTAAGAGCCAATTGCAACAATCCCAAGTTGAGCATCAGCTTCGCAGAGAAGTTGAAATACAGAGCCATCTCCGTCACCCTCTTATCTTGCGCCTTTATGGATACTTTTATGATCAGGTATATACTTCTTACCTGTGCTGCTAACGCACTTAGAGTCTAGCCATGCATTACTGCTGAAGAAGGTTAAATACACATACTGATATTTAATTTTTCGTTGCAGAAACGAGTTTACTTGATTTTAGAGTATGCACCCAAAGGTGAACTTTACAAGGAATTGCAGAAATGCAAATATTTCAGTGAAAGACGTGCAGCTACTGTAAGTACTAATTCCCCCTCCTCACATGCTTTTGTTTGTGAATCTCTAAAGCATCAGCTGATGTAACTTTTTATTGGTGATTTGTACGTATCCCAAACCTAGTAAATACTGAAACATAACATGATATCACTTCTGACACAAATAACATAGAGTGTGTATTCTTCTGAAACTGATAAGCCTATGTTGTTATTGTGGTTGAGGCAGTATGTTGCATCATTGGCTCGAGCCCTTATATATTTCCATGGAAAGCATGTCATACACAGGGACATTAAACCAGAGAACCTTCTTATTGGTGCACAGGTGATTCCCCATACTTAGACTATTGTTTCTTTTATGGTTCTTTTGGTTGTTGTTTTTAATTTGTGTTGATCATGTGAAAATCTTCTTCATTATCAGGGTGAACTTAAGATAGCGGACTTTGGGTGGTCAGTGCACACATTCAATCGCAGGCGGACCATGTGCAGCACACTGGATTACCTTCCACCTGAGATGGGTATGTTCAGTTGGCAAGATTTTTTCACACTTTTTATGTTAGTCTATCTATAATATGATGAGCCTAAATTTTTTGAGGTTTCAACAAGGGAGAGTGTAGAACATGATGCGAGTGTGGAAATATGGAGCCTTGGTGTCCTTTGCTATGAGTTTCTTTATGGAGTTCCCCCTTTTGAGGCTAAATAACATTCTGATACTTATAGGAGGTAAGCACTAAGCATTTGAATTATAGCTTATAGATCATCATGTATGAGTTTTTTTGTTTGTATCAGAATGAACTAATTGAAAGTAAAAGGAAGTAACCATTGAACAGGACTATAAGATGCTATTGACTCTGCCGCGCTTAATATTGCTTCTTTATATTGTAACCAGGATAATTCAAGTGGATCTCAAGTTCCCTCCTAAACCAATCGTTTCTTCTGCTGCCAAAGACCTCATCAGCCAGGTTTTTACATCTGTTCAATGCACTATGGAATTTTTTTTTTTGTGAACTTCTCTCAAGAATTTTCTTTTCACGGTTTATTTTATTAAAGCATTTCTTCCTGAGTGTTTTTTCCTTCTCATCTTTTATTAGGATGATAATTAGTTTGATCACAATTACTTATTTCAAGCTATTGGTTTAATTGTGCACAATTTATAAAGGCGTCTGGAGCATATATTTTTCGCCCTAATGGTTCATCAATTCCCATCAACTTCAACGAGAAGGTAAAATCGTATGTATGCTACTTGTGCTCAATTACCAATTTTTGGTGTAACAAGAGATTAATAAGTTTTCATTTTTGAAACATTTCAGTCTCCTCTCACAGTTTTGCGAGGACCAATCGTGCATGAAGTCCATCAGCAAATCAATTCATGGATATACCAGGTAGGTAGTATTCATCGATAGTTTAGGCAACTTTCTAGATTCTTTCAAACATCTATGGTTATTTAGTACCTAATATATAATAGCACAAGTATCATAGGCAGAGAATTGTCATGAATTACAGTTAAGAAAACAAATAAAACTTGGAATCTGTTAAGAGGCATGCAGTAGGCTTATTCTTTATTGTCCCTTGTTGAAAGCTCCATATAGCTATATCAGTAATTGACTATTGTCTTAATTGAACAGACTACCAGACTGTTCAAAGGAAAAGAACATGCTGAAGTTGAGTTTATTGTAAGTCTTGCTCTTTTATTTTTTCCCTGTTTTTCGAACATAATTACTCGATAGTCGATACTTTATTTTATAAGAGCATGTAATCATGAAAAATTTGTTGACATCAGGTTGGACCTATATATTATACCGATTAAATAACTTATTCAATTTTTTTACCCTTTTATGTAGGAGGTTACTTGTTGAATATGATTCCAGAGGTGTTGCAGAGGCACTAAATGAAACAGTTTGCGTCTCTGATAAGTGCACAGGGTTAACTGTAAGAAAATCCACCTAGCCTGTGAGTTATTACACGGCAAGGATCATAGTTTTATTATTGTAATCTGTAGGATCTTGGCTAGTTGAATTTATTGTAATCTGTAGGATCTTGGCTAG

Protein sequence

>MS.gene03620.t1

MELHSSSSLSSISTKTSLSLSEIDMAIATETQPQPHQQHHTASSKVSGSAKDQRRWIINDFDIGKPLGRGKFGHVYLASEKTSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPLILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYFHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCSTLDYLPPEMGMESVEHDASVEIWSLGVLCYEFLYGMLLTLPRLILLLYIVTRIIQVDLKFPPKPIVSSAAKDLISQASGAYIFRPNGSSIPINFNEKSPLTVLRGPIVHEVHQQINSWIYQTTRLFKGKEHAEVEFIDLG