Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036240.t1 | XP_003590676.1 | 91.1 | 325 | 27 | 2 | 1 | 323 | 1 | 325 | 2.70E-160 | 574.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036240.t1 | Q8S3D5 | 36.2 | 130 | 81 | 1 | 188 | 315 | 136 | 265 | 8.5e-14 | 79.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036240.t1 | G7IEF8 | 91.1 | 325 | 27 | 2 | 1 | 323 | 1 | 325 | 1.9e-160 | 574.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene036240.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036240.t1 | MTR_1g072530 | 91.077 | 325 | 27 | 2 | 1 | 323 | 1 | 325 | 0.0 | 602 |
| MS.gene036240.t1 | MTR_1g072530 | 90.099 | 303 | 28 | 2 | 1 | 301 | 1 | 303 | 0.0 | 557 |
| MS.gene036240.t1 | MTR_4g131160 | 35.811 | 148 | 75 | 3 | 188 | 315 | 202 | 349 | 1.11e-17 | 83.6 |
| MS.gene036240.t1 | MTR_4g131160 | 35.811 | 148 | 75 | 3 | 188 | 315 | 205 | 352 | 1.31e-17 | 83.2 |
| MS.gene036240.t1 | MTR_1g080890 | 33.577 | 137 | 79 | 1 | 188 | 312 | 199 | 335 | 1.70e-15 | 76.6 |
| MS.gene036240.t1 | MTR_1g070870 | 33.333 | 117 | 66 | 1 | 211 | 315 | 149 | 265 | 1.53e-11 | 64.3 |
| MS.gene036240.t1 | MTR_1g070870 | 33.333 | 117 | 66 | 1 | 211 | 315 | 152 | 268 | 1.79e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036240.t1 | AT5G64980 | 44.715 | 123 | 66 | 2 | 189 | 309 | 218 | 340 | 1.25e-22 | 97.1 |
| MS.gene036240.t1 | AT5G64980 | 44.715 | 123 | 66 | 2 | 189 | 309 | 218 | 340 | 1.25e-22 | 97.1 |
| MS.gene036240.t1 | AT2G24260 | 34.132 | 167 | 83 | 5 | 168 | 315 | 23 | 181 | 3.34e-18 | 82.8 |
| MS.gene036240.t1 | AT4G30980 | 36.154 | 130 | 81 | 1 | 188 | 315 | 136 | 265 | 3.55e-18 | 84.0 |
| MS.gene036240.t1 | AT4G30980 | 36.154 | 130 | 81 | 1 | 188 | 315 | 184 | 313 | 6.67e-18 | 83.6 |
| MS.gene036240.t1 | AT2G24260 | 34.132 | 167 | 83 | 5 | 168 | 315 | 126 | 284 | 1.54e-17 | 82.4 |
| MS.gene036240.t1 | AT5G58010 | 33.108 | 148 | 75 | 4 | 188 | 313 | 105 | 250 | 1.85e-14 | 73.2 |
| MS.gene036240.t1 | AT1G03040 | 28.962 | 183 | 112 | 3 | 145 | 309 | 91 | 273 | 1.19e-12 | 67.8 |
| MS.gene036240.t1 | AT1G03040 | 29.630 | 189 | 110 | 4 | 144 | 309 | 90 | 278 | 1.40e-12 | 67.8 |
| MS.gene036240.t1 | AT4G02590 | 33.628 | 113 | 61 | 1 | 211 | 309 | 112 | 224 | 1.75e-11 | 63.9 |
| MS.gene036240.t1 | AT4G02590 | 33.628 | 113 | 61 | 1 | 211 | 309 | 175 | 287 | 2.59e-11 | 63.9 |
| MS.gene036240.t1 | AT4G02590 | 33.628 | 113 | 61 | 1 | 211 | 309 | 175 | 287 | 2.59e-11 | 63.9 |
Find 52 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGCTACCTCCTGATTT+TGG | 0.143862 | 1.3:-52227136 | None:intergenic |
| GATCCTGGAAAAGCTGATTT+TGG | 0.197185 | 1.3:+52226257 | MS.gene036240:CDS |
| GATTCTTCAAGTCATGATTT+TGG | 0.215491 | 1.3:+52226293 | MS.gene036240:CDS |
| ATGATTTATTCACAGGGTTA+TGG | 0.279023 | 1.3:+52228255 | MS.gene036240:intron |
| TGAGCCTCTTGAAGAGATAA+TGG | 0.328914 | 1.3:+52228305 | MS.gene036240:CDS |
| TGATTTATTCACAGGGTTAT+GGG | 0.337574 | 1.3:+52228256 | MS.gene036240:intron |
| TGTTCTGCTGCCTATTGCTT+TGG | 0.355110 | 1.3:+52228386 | MS.gene036240:CDS |
| TGCTTATCTCCAACTGAATC+AGG | 0.357388 | 1.3:-52227055 | None:intergenic |
| TTACTTCCAGATCCAAAATC+AGG | 0.365049 | 1.3:+52227124 | MS.gene036240:CDS |
| TCAGTTGTTGTAGTAGTGTT+TGG | 0.377494 | 1.3:-52226173 | None:intergenic |
| TACTACCAAGAGTGCGATAA+TGG | 0.378263 | 1.3:-52226217 | None:intergenic |
| GAGCCTCTTGAAGAGATAAT+GGG | 0.382191 | 1.3:+52228306 | MS.gene036240:CDS |
| ACAACTGAGTATAATATGAT+TGG | 0.400574 | 1.3:+52226188 | MS.gene036240:CDS |
| GGTTCAACCATTGCATAGCT+TGG | 0.429150 | 1.3:-52228422 | None:intergenic |
| AAACAACAGATTACCACATC+TGG | 0.432844 | 1.3:-52227426 | None:intergenic |
| GCTTCTCAATTTGATCATAT+AGG | 0.440344 | 1.3:+52227082 | MS.gene036240:CDS |
| GGGTTATGGGCATTATATAA+AGG | 0.442119 | 1.3:+52228269 | MS.gene036240:intron |
| AGTTCATCAACCAAAGCAAT+AGG | 0.445410 | 1.3:-52228396 | None:intergenic |
| GCAATTCATGTAAAGCTTTG+AGG | 0.446403 | 1.3:-52227395 | None:intergenic |
| CAAAACCAACACGGAAGAAG+TGG | 0.446807 | 1.3:+52226074 | MS.gene036240:CDS |
| GTTAGCTAGCCTAGCTAGCT+TGG | 0.456823 | 1.3:-52228443 | None:intergenic |
| CTATCCCACTTCTTCCGTGT+TGG | 0.458702 | 1.3:-52226079 | None:intergenic |
| TTTGGATCTGGAAGTAAAGA+AGG | 0.473688 | 1.3:-52227118 | None:intergenic |
| GGGTAGTCAAGCTTACATAT+TGG | 0.487201 | 1.3:+52227585 | MS.gene036240:intron |
| TTGGAGACATGATGAAGGAG+AGG | 0.492348 | 1.3:+52226455 | MS.gene036240:CDS |
| ATGGTTGAACCAAGCTAGCT+AGG | 0.499706 | 1.3:+52228434 | MS.gene036240:CDS |
| CAACTGAGTATAATATGATT+GGG | 0.500571 | 1.3:+52226189 | MS.gene036240:CDS |
| AGCAGCAGTTTCAATGATCC+TGG | 0.501372 | 1.3:+52226242 | MS.gene036240:CDS |
| TTCCCCATTATCTCTTCAAG+AGG | 0.517037 | 1.3:-52228309 | None:intergenic |
| AATAGCCATTATCGCACTCT+TGG | 0.517317 | 1.3:+52226212 | MS.gene036240:CDS |
| CAACTTTCATATGAAAATGA+AGG | 0.525784 | 1.3:+52226014 | MS.gene036240:CDS |
| GATGTTCCTCAGAAACATCA+TGG | 0.529826 | 1.3:-52226046 | None:intergenic |
| AATTAACTAACCTCAGCATA+GGG | 0.551131 | 1.3:-52226516 | None:intergenic |
| CTCTTTGAATATAGCAACGC+AGG | 0.564825 | 1.3:+52227355 | MS.gene036240:intron |
| ACGGAAGAAGTGGGATAGAG+TGG | 0.579179 | 1.3:+52226084 | MS.gene036240:CDS |
| ATACTTGCAGATTCAAGTGA+AGG | 0.584258 | 1.3:+52227630 | MS.gene036240:CDS |
| CAATTAACTAACCTCAGCAT+AGG | 0.587618 | 1.3:-52226517 | None:intergenic |
| GTTCCTTTGCAGGAACTAAG+TGG | 0.591768 | 1.3:+52227789 | MS.gene036240:intron |
| ACATGGACACCTGATTCAGT+TGG | 0.593145 | 1.3:+52227046 | MS.gene036240:CDS |
| TGTAATAGGGTCATGCAACA+TGG | 0.593241 | 1.3:+52227029 | MS.gene036240:intron |
| AGTGTTTGGAAGATAGCATG+AGG | 0.616860 | 1.3:-52226159 | None:intergenic |
| AAGTAGCCATGATGTTTCTG+AGG | 0.620893 | 1.3:+52226040 | MS.gene036240:CDS |
| AGCCTCTTGAAGAGATAATG+GGG | 0.633642 | 1.3:+52228307 | MS.gene036240:CDS |
| CTTCCAGATCCAAAATCAGG+AGG | 0.643289 | 1.3:+52227127 | MS.gene036240:CDS |
| TGTACCTCATGGAAAACTAG+TGG | 0.648110 | 1.3:-52227843 | None:intergenic |
| TCAAAATCTTCCCTATGCTG+AGG | 0.652824 | 1.3:+52226506 | MS.gene036240:CDS |
| AAAACCAACACGGAAGAAGT+GGG | 0.658254 | 1.3:+52226075 | MS.gene036240:CDS |
| AACTGAACCAAGCTATGCAA+TGG | 0.660513 | 1.3:+52228415 | MS.gene036240:CDS |
| CAGATTACCACATCTGGAGT+CGG | 0.663959 | 1.3:-52227420 | None:intergenic |
| CATCAAATTCAAAACCAACA+CGG | 0.680386 | 1.3:+52226065 | MS.gene036240:CDS |
| TGTCAGCTACTTGAAAACAA+AGG | 0.685270 | 1.3:+52228360 | MS.gene036240:CDS |
| ATTGCTGCCGACTCCAGATG+TGG | 0.727085 | 1.3:+52227413 | MS.gene036240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCCTAATTTTTTTTTTAA+TGG | + | chr1.3:52227662-52227681 | MS.gene036240:intron | 10.0% |
| !!! | ATTGTAATAATTTTGTAATA+GGG | + | chr1.3:52227016-52227035 | MS.gene036240:intron | 10.0% |
| !!! | TATTGTAATAATTTTGTAAT+AGG | + | chr1.3:52227015-52227034 | MS.gene036240:intron | 10.0% |
| !! | AAAAAAAATTAGGATTGAAA+AGG | - | chr1.3:52227658-52227677 | None:intergenic | 15.0% |
| !! | AATAAGCTGAAAAAAATATA+TGG | + | chr1.3:52226883-52226902 | MS.gene036240:intron | 15.0% |
| !! | ATTAAAATTCAGTTCATTAA+AGG | - | chr1.3:52227560-52227579 | None:intergenic | 15.0% |
| !! | TAATATATCTACTGAAATTA+AGG | - | chr1.3:52227876-52227895 | None:intergenic | 15.0% |
| !! | TTGCCATTAAAAAAAAAATT+AGG | - | chr1.3:52227668-52227687 | None:intergenic | 15.0% |
| !!! | ATTTAAGTAGCTAATTTTTT+TGG | + | chr1.3:52227489-52227508 | MS.gene036240:intron | 15.0% |
| !!! | GATTTAATATTAGTTTTCAA+AGG | + | chr1.3:52227451-52227470 | MS.gene036240:intron | 15.0% |
| !!! | TATTTTTTTTCTTCTTTATC+CGG | + | chr1.3:52227711-52227730 | MS.gene036240:intron | 15.0% |
| !!! | TTTAAGTAGCTAATTTTTTT+GGG | + | chr1.3:52227490-52227509 | MS.gene036240:intron | 15.0% |
| !!! | TTTCTATTATTTTAAGCTTA+AGG | - | chr1.3:52228060-52228079 | None:intergenic | 15.0% |
| !! | AAATAAGCTGAAAAAACTTA+TGG | + | chr1.3:52226815-52226834 | MS.gene036240:intron | 20.0% |
| !! | ATATATGAGCTACTTAAATT+TGG | - | chr1.3:52227517-52227536 | None:intergenic | 20.0% |
| !! | TTACAATAACACTATAAGTT+AGG | - | chr1.3:52227003-52227022 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCTTCTTTATCC+GGG | + | chr1.3:52227712-52227731 | MS.gene036240:intron | 20.0% |
| !!! | TATTCAACATAGTTATTTTG+AGG | - | chr1.3:52226128-52226147 | None:intergenic | 20.0% |
| !!! | TGTTTTTTAGTAACAAAGTT+CGG | - | chr1.3:52228124-52228143 | None:intergenic | 20.0% |
| !!! | TTTGTTATGATTTATTCACA+GGG | + | chr1.3:52228249-52228268 | MS.gene036240:intron | 20.0% |
| ! | ACAACTGAGTATAATATGAT+TGG | + | chr1.3:52226188-52226207 | MS.gene036240:CDS | 25.0% |
| ! | CAACTGAGTATAATATGATT+GGG | + | chr1.3:52226189-52226208 | MS.gene036240:CDS | 25.0% |
| ! | CAACTTTCATATGAAAATGA+AGG | + | chr1.3:52226014-52226033 | MS.gene036240:CDS | 25.0% |
| ! | CATCTCTGATAAAATCATAA+GGG | + | chr1.3:52227213-52227232 | MS.gene036240:intron | 25.0% |
| ! | TACTCAAGAAATTATTTGCA+TGG | - | chr1.3:52227943-52227962 | None:intergenic | 25.0% |
| !! | ATGTTTTGTAAATTTATGCG+AGG | + | chr1.3:52226376-52226395 | MS.gene036240:intron | 25.0% |
| !! | GTATATATGCATTTTGAATG+TGG | - | chr1.3:52227239-52227258 | None:intergenic | 25.0% |
| !! | TAACTTGTATTTAGATGCAA+CGG | - | chr1.3:52228026-52228045 | None:intergenic | 25.0% |
| !! | TGGAAAAAGTTTTACTTACA+CGG | - | chr1.3:52227195-52227214 | None:intergenic | 25.0% |
| !!! | GAACTGAATTTTAATTTGCA+GGG | + | chr1.3:52227565-52227584 | MS.gene036240:intron | 25.0% |
| !!! | GTTGTTTTCATAAGTTATTG+TGG | + | chr1.3:52226712-52226731 | MS.gene036240:intron | 25.0% |
| !!! | GTTTGTTATGATTTATTCAC+AGG | + | chr1.3:52228248-52228267 | MS.gene036240:intron | 25.0% |
| !!! | TAGTTATTTTGAGGTAGTTT+TGG | - | chr1.3:52226119-52226138 | None:intergenic | 25.0% |
| !!! | TGAACTGAATTTTAATTTGC+AGG | + | chr1.3:52227564-52227583 | MS.gene036240:intron | 25.0% |
| AAGAAATTATTTGCATGGAG+CGG | - | chr1.3:52227938-52227957 | None:intergenic | 30.0% | |
| AAGTTATCTTGAAGAGCTAA+TGG | + | chr1.3:52226792-52226811 | MS.gene036240:intron | 30.0% | |
| AATTAACTAACCTCAGCATA+GGG | - | chr1.3:52226519-52226538 | None:intergenic | 30.0% | |
| AGATTGTTAACTAGTTGACA+AGG | - | chr1.3:52227291-52227310 | None:intergenic | 30.0% | |
| AGGAAGGTAAAGTTAATGAA+TGG | + | chr1.3:52226320-52226339 | MS.gene036240:intron | 30.0% | |
| ATGATTTATTCACAGGGTTA+TGG | + | chr1.3:52228255-52228274 | MS.gene036240:intron | 30.0% | |
| CATCAAATTCAAAACCAACA+CGG | + | chr1.3:52226065-52226084 | MS.gene036240:CDS | 30.0% | |
| CCATCTCTGATAAAATCATA+AGG | + | chr1.3:52227212-52227231 | MS.gene036240:intron | 30.0% | |
| GATTGTTAACTAGTTGACAA+GGG | - | chr1.3:52227290-52227309 | None:intergenic | 30.0% | |
| GCAAAGTTGTGTTAATGAAT+TGG | - | chr1.3:52227318-52227337 | None:intergenic | 30.0% | |
| GCTTCTCAATTTGATCATAT+AGG | + | chr1.3:52227082-52227101 | MS.gene036240:CDS | 30.0% | |
| TATGCAAACGTGAAACTATT+TGG | - | chr1.3:52226939-52226958 | None:intergenic | 30.0% | |
| TGATTTATTCACAGGGTTAT+GGG | + | chr1.3:52228256-52228275 | MS.gene036240:intron | 30.0% | |
| ! | CCTTATGATTTTATCAGAGA+TGG | - | chr1.3:52227215-52227234 | None:intergenic | 30.0% |
| ! | GATTCTTCAAGTCATGATTT+TGG | + | chr1.3:52226293-52226312 | MS.gene036240:CDS | 30.0% |
| ! | TGCTATATTCAAAGAGTACA+CGG | - | chr1.3:52227351-52227370 | None:intergenic | 30.0% |
| !! | TTGTTATTTGTACAGCTCAT+AGG | + | chr1.3:52227983-52228002 | MS.gene036240:intron | 30.0% |
| !! | TTTCTCACTTTTCTGTTTTG+TGG | - | chr1.3:52227158-52227177 | None:intergenic | 30.0% |
| AAACAACAGATTACCACATC+TGG | - | chr1.3:52227429-52227448 | None:intergenic | 35.0% | |
| AAAGAAAGTTGTTCCTTTGC+AGG | + | chr1.3:52227779-52227798 | MS.gene036240:intron | 35.0% | |
| AAGCTCTCTTCAAGAGTTTA+TGG | + | chr1.3:52226859-52226878 | MS.gene036240:intron | 35.0% | |
| AGCAGTGTCAAATTCATTGA+TGG | + | chr1.3:52228221-52228240 | MS.gene036240:intron | 35.0% | |
| AGTTCATCAACCAAAGCAAT+AGG | - | chr1.3:52228399-52228418 | None:intergenic | 35.0% | |
| ATACTTGCAGATTCAAGTGA+AGG | + | chr1.3:52227630-52227649 | MS.gene036240:CDS | 35.0% | |
| CAATTAACTAACCTCAGCAT+AGG | - | chr1.3:52226520-52226539 | None:intergenic | 35.0% | |
| GCAATTCATGTAAAGCTTTG+AGG | - | chr1.3:52227398-52227417 | None:intergenic | 35.0% | |
| GCTACACATAAGCACTTAAA+TGG | - | chr1.3:52226637-52226656 | None:intergenic | 35.0% | |
| GGGTTATGGGCATTATATAA+AGG | + | chr1.3:52228269-52228288 | MS.gene036240:intron | 35.0% | |
| TCAGTTGTTGTAGTAGTGTT+TGG | - | chr1.3:52226176-52226195 | None:intergenic | 35.0% | |
| TGTCAGCTACTTGAAAACAA+AGG | + | chr1.3:52228360-52228379 | MS.gene036240:CDS | 35.0% | |
| TTACTTCCAGATCCAAAATC+AGG | + | chr1.3:52227124-52227143 | MS.gene036240:CDS | 35.0% | |
| TTATGTTAGAACAACAAGCC+CGG | - | chr1.3:52228193-52228212 | None:intergenic | 35.0% | |
| TTTGGATCTGGAAGTAAAGA+AGG | - | chr1.3:52227121-52227140 | None:intergenic | 35.0% | |
| ! | AAACCAAAATCAGCTTTTCC+AGG | - | chr1.3:52226263-52226282 | None:intergenic | 35.0% |
| ! | ATGCTGAGGTTAGTTAATTG+AGG | + | chr1.3:52226520-52226539 | MS.gene036240:intron | 35.0% |
| ! | GTATCGTAACTCTTTTGAAC+CGG | + | chr1.3:52228171-52228190 | MS.gene036240:intron | 35.0% |
| ! | GTTTTCAGCATGTAGGATTT+TGG | + | chr1.3:52226436-52226455 | MS.gene036240:intron | 35.0% |
| ! | TATCGTAACTCTTTTGAACC+GGG | + | chr1.3:52228172-52228191 | MS.gene036240:intron | 35.0% |
| ! | TATTCAAAGAGTACACGGTA+AGG | - | chr1.3:52227346-52227365 | None:intergenic | 35.0% |
| !!! | CAAGTCATGATTTTGGTGTT+AGG | + | chr1.3:52226300-52226319 | MS.gene036240:CDS | 35.0% |
| !!! | GTGTTTTGTTTTCAGCATGT+AGG | + | chr1.3:52226429-52226448 | MS.gene036240:intron | 35.0% |
| !!! | TATACCACTAGTTTTCCATG+AGG | + | chr1.3:52227839-52227858 | MS.gene036240:CDS | 35.0% |
| !!! | TCATGATTTTGGTGTTAGGA+AGG | + | chr1.3:52226304-52226323 | MS.gene036240:CDS | 35.0% |
| AAAACCAACACGGAAGAAGT+GGG | + | chr1.3:52226075-52226094 | MS.gene036240:CDS | 40.0% | |
| AACTGAACCAAGCTATGCAA+TGG | + | chr1.3:52228415-52228434 | MS.gene036240:CDS | 40.0% | |
| AAGGAAAGATGTGTACCTCA+TGG | - | chr1.3:52227857-52227876 | None:intergenic | 40.0% | |
| AATAGCCATTATCGCACTCT+TGG | + | chr1.3:52226212-52226231 | MS.gene036240:CDS | 40.0% | |
| AGCCTCTTGAAGAGATAATG+GGG | + | chr1.3:52228307-52228326 | MS.gene036240:CDS | 40.0% | |
| AGTGTTTGGAAGATAGCATG+AGG | - | chr1.3:52226162-52226181 | None:intergenic | 40.0% | |
| CTCTTTGAATATAGCAACGC+AGG | + | chr1.3:52227355-52227374 | MS.gene036240:intron | 40.0% | |
| GAGCCTCTTGAAGAGATAAT+GGG | + | chr1.3:52228306-52228325 | MS.gene036240:CDS | 40.0% | |
| GATGTTCCTCAGAAACATCA+TGG | - | chr1.3:52226049-52226068 | None:intergenic | 40.0% | |
| GGGTAGTCAAGCTTACATAT+TGG | + | chr1.3:52227585-52227604 | MS.gene036240:intron | 40.0% | |
| TATTTGCATGGAGCGGAATT+TGG | - | chr1.3:52227931-52227950 | None:intergenic | 40.0% | |
| TCAAAATCTTCCCTATGCTG+AGG | + | chr1.3:52226506-52226525 | MS.gene036240:CDS | 40.0% | |
| TGAGCCTCTTGAAGAGATAA+TGG | + | chr1.3:52228305-52228324 | MS.gene036240:CDS | 40.0% | |
| TGCTTATCTCCAACTGAATC+AGG | - | chr1.3:52227058-52227077 | None:intergenic | 40.0% | |
| TGTAATAGGGTCATGCAACA+TGG | + | chr1.3:52227029-52227048 | MS.gene036240:intron | 40.0% | |
| TGTACCTCATGGAAAACTAG+TGG | - | chr1.3:52227846-52227865 | None:intergenic | 40.0% | |
| TTCCCCATTATCTCTTCAAG+AGG | - | chr1.3:52228312-52228331 | None:intergenic | 40.0% | |
| TTGATCACAACGTTCAAACC+CGG | - | chr1.3:52227733-52227752 | None:intergenic | 40.0% | |
| ! | AAGTAGCCATGATGTTTCTG+AGG | + | chr1.3:52226040-52226059 | MS.gene036240:CDS | 40.0% |
| ! | TACTACCAAGAGTGCGATAA+TGG | - | chr1.3:52226220-52226239 | None:intergenic | 40.0% |
| !! | GATCCTGGAAAAGCTGATTT+TGG | + | chr1.3:52226257-52226276 | MS.gene036240:CDS | 40.0% |
| !! | GGATTTTGGAGACATGATGA+AGG | + | chr1.3:52226450-52226469 | MS.gene036240:CDS | 40.0% |
| ACATGGACACCTGATTCAGT+TGG | + | chr1.3:52227046-52227065 | MS.gene036240:CDS | 45.0% | |
| AGCAGCAGTTTCAATGATCC+TGG | + | chr1.3:52226242-52226261 | MS.gene036240:CDS | 45.0% | |
| CAAAACCAACACGGAAGAAG+TGG | + | chr1.3:52226074-52226093 | MS.gene036240:CDS | 45.0% | |
| CTTCCACTTAGTTCCTGCAA+AGG | - | chr1.3:52227795-52227814 | None:intergenic | 45.0% | |
| CTTCCAGATCCAAAATCAGG+AGG | + | chr1.3:52227127-52227146 | MS.gene036240:CDS | 45.0% | |
| GGTTCAACCATTGCATAGCT+TGG | - | chr1.3:52228425-52228444 | None:intergenic | 45.0% | |
| GTTCCTTTGCAGGAACTAAG+TGG | + | chr1.3:52227789-52227808 | MS.gene036240:intron | 45.0% | |
| TGTTCTGCTGCCTATTGCTT+TGG | + | chr1.3:52228386-52228405 | MS.gene036240:CDS | 45.0% | |
| TTGGAGACATGATGAAGGAG+AGG | + | chr1.3:52226455-52226474 | MS.gene036240:CDS | 45.0% | |
| ! | CAGATTACCACATCTGGAGT+CGG | - | chr1.3:52227423-52227442 | None:intergenic | 45.0% |
| ! | CTACCTCCTGATTTTGGATC+TGG | - | chr1.3:52227133-52227152 | None:intergenic | 45.0% |
| ACGGAAGAAGTGGGATAGAG+TGG | + | chr1.3:52226084-52226103 | MS.gene036240:CDS | 50.0% | |
| CTATCCCACTTCTTCCGTGT+TGG | - | chr1.3:52226082-52226101 | None:intergenic | 50.0% | |
| GCCACTCTGCAGTTAGATGT+AGG | + | chr1.3:52228089-52228108 | MS.gene036240:intron | 50.0% | |
| GCCTACATCTAACTGCAGAG+TGG | - | chr1.3:52228093-52228112 | None:intergenic | 50.0% | |
| ! | GTGGAGCTACCTCCTGATTT+TGG | - | chr1.3:52227139-52227158 | None:intergenic | 50.0% |
| !! | ATTGCTGCCGACTCCAGATG+TGG | + | chr1.3:52227413-52227432 | MS.gene036240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52225975 | 52228455 | 52225975 | ID=MS.gene036240 |
| chr1.3 | mRNA | 52225975 | 52228455 | 52225975 | ID=MS.gene036240.t1;Parent=MS.gene036240 |
| chr1.3 | exon | 52225975 | 52226325 | 52225975 | ID=MS.gene036240.t1.exon1;Parent=MS.gene036240.t1 |
| chr1.3 | CDS | 52225975 | 52226325 | 52225975 | ID=cds.MS.gene036240.t1;Parent=MS.gene036240.t1 |
| chr1.3 | exon | 52226444 | 52226527 | 52226444 | ID=MS.gene036240.t1.exon2;Parent=MS.gene036240.t1 |
| chr1.3 | CDS | 52226444 | 52226527 | 52226444 | ID=cds.MS.gene036240.t1;Parent=MS.gene036240.t1 |
| chr1.3 | exon | 52227037 | 52227195 | 52227037 | ID=MS.gene036240.t1.exon3;Parent=MS.gene036240.t1 |
| chr1.3 | CDS | 52227037 | 52227195 | 52227037 | ID=cds.MS.gene036240.t1;Parent=MS.gene036240.t1 |
| chr1.3 | exon | 52227369 | 52227434 | 52227369 | ID=MS.gene036240.t1.exon4;Parent=MS.gene036240.t1 |
| chr1.3 | CDS | 52227369 | 52227434 | 52227369 | ID=cds.MS.gene036240.t1;Parent=MS.gene036240.t1 |
| chr1.3 | exon | 52227586 | 52227651 | 52227586 | ID=MS.gene036240.t1.exon5;Parent=MS.gene036240.t1 |
| chr1.3 | CDS | 52227586 | 52227651 | 52227586 | ID=cds.MS.gene036240.t1;Parent=MS.gene036240.t1 |
| chr1.3 | exon | 52227801 | 52227860 | 52227801 | ID=MS.gene036240.t1.exon6;Parent=MS.gene036240.t1 |
| chr1.3 | CDS | 52227801 | 52227860 | 52227801 | ID=cds.MS.gene036240.t1;Parent=MS.gene036240.t1 |
| chr1.3 | exon | 52228270 | 52228455 | 52228270 | ID=MS.gene036240.t1.exon7;Parent=MS.gene036240.t1 |
| chr1.3 | CDS | 52228270 | 52228455 | 52228270 | ID=cds.MS.gene036240.t1;Parent=MS.gene036240.t1 |
| Gene Sequence |
| Protein sequence |
