Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036267.t1 | KEH26293.1 | 95 | 80 | 4 | 0 | 1 | 80 | 1 | 80 | 3.40E-35 | 159.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036267.t1 | A0A072UB45 | 95.0 | 80 | 4 | 0 | 1 | 80 | 1 | 80 | 2.5e-35 | 159.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene036267.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036267.t1 | MTR_6g051425 | 95.000 | 80 | 4 | 0 | 1 | 80 | 1 | 80 | 5.36e-47 | 161 |
| MS.gene036267.t1 | MTR_3g465760 | 95.122 | 41 | 2 | 0 | 40 | 80 | 1 | 41 | 1.23e-20 | 84.3 |
| MS.gene036267.t1 | MTR_5g077900 | 74.074 | 54 | 11 | 1 | 213 | 263 | 156 | 209 | 3.41e-18 | 82.0 |
| MS.gene036267.t1 | MTR_7g046380 | 74.074 | 54 | 11 | 1 | 213 | 263 | 338 | 391 | 6.63e-18 | 84.0 |
| MS.gene036267.t1 | MTR_0002s1270 | 74.074 | 54 | 11 | 1 | 213 | 263 | 330 | 383 | 1.33e-17 | 83.2 |
| MS.gene036267.t1 | MTR_0057s0200 | 73.810 | 42 | 11 | 0 | 222 | 263 | 1 | 42 | 4.77e-15 | 68.9 |
| MS.gene036267.t1 | MTR_4g066300 | 87.500 | 32 | 4 | 0 | 219 | 250 | 6 | 37 | 9.83e-13 | 62.8 |
| MS.gene036267.t1 | MTR_4g066320 | 90.000 | 30 | 3 | 0 | 221 | 250 | 61 | 90 | 2.66e-12 | 63.2 |
| MS.gene036267.t1 | MTR_6g051620 | 93.333 | 30 | 2 | 0 | 254 | 283 | 27 | 56 | 3.50e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATTTGGCTTGTCTTCT+AGG | 0.111297 | 5.2:-20655598 | None:intergenic |
| GCCAGTCCTAGCAGCAGTTT+TGG | 0.259144 | 5.2:+20656439 | MS.gene036267:CDS |
| AAGCAGATACTTATGATATA+TGG | 0.272923 | 5.2:+20657454 | MS.gene036267:CDS |
| CCATCTTGAAGCCATGTTCT+TGG | 0.280191 | 5.2:-20654492 | None:intergenic |
| TATTGAGGTGGTGCCATAAC+TGG | 0.282495 | 5.2:-20662062 | None:intergenic |
| CACCCTTGTCCTGGATTTGC+TGG | 0.296550 | 5.2:+20655621 | MS.gene036267:CDS |
| ATTGTTCTTAAACCCTTGTT+TGG | 0.337062 | 5.2:-20654593 | None:intergenic |
| TTCTAGGGTTCCAGAGTACT+TGG | 0.344109 | 5.2:-20655582 | None:intergenic |
| CAGGACAAGGGTGTTACATT+TGG | 0.348152 | 5.2:-20655611 | None:intergenic |
| AAGTTAGAGAGAAGTTGAAA+TGG | 0.364983 | 5.2:+20654768 | MS.gene036267:CDS |
| TCACCTACGATTTCTCCTTC+TGG | 0.371892 | 5.2:-20654619 | None:intergenic |
| GGTGCAGCTTACTGCATTGT+AGG | 0.373532 | 5.2:+20657504 | MS.gene036267:CDS |
| GTCTGCACAGGTCCAGCAGC+TGG | 0.375065 | 5.2:+20656403 | MS.gene036267:CDS |
| CAGATAGCAGCACCAGCTGC+TGG | 0.385399 | 5.2:-20656415 | None:intergenic |
| AGAGGGTTCATCAATGATAT+AGG | 0.385494 | 5.2:+20657328 | MS.gene036267:intron |
| TGCTGTCCTGCTGTCTGCAC+AGG | 0.391473 | 5.2:+20656391 | MS.gene036267:CDS |
| CTATCTTGGAAAGCACTACT+TGG | 0.392415 | 5.2:-20654731 | None:intergenic |
| AAGTCCATCGCGCGCTGCAC+TGG | 0.393120 | 5.2:-20661313 | None:intergenic |
| TATCCACAATCATTGCCATT+AGG | 0.411955 | 5.2:-20657767 | None:intergenic |
| TCTAGAAGTACTCTGACTTC+TGG | 0.423076 | 5.2:-20662099 | None:intergenic |
| TACATTTGGCTTGTCTTCTA+GGG | 0.439104 | 5.2:-20655597 | None:intergenic |
| TTGCCAAGAAAGCAACCTAA+TGG | 0.444875 | 5.2:+20657752 | MS.gene036267:intron |
| TTCCAGAGTACTTGGATTGT+AGG | 0.445466 | 5.2:-20655574 | None:intergenic |
| AGTTAGAGAGAAGTTGAAAT+GGG | 0.446466 | 5.2:+20654769 | MS.gene036267:CDS |
| CCCAAAACTGCTGCTAGGAC+TGG | 0.454465 | 5.2:-20656440 | None:intergenic |
| CTGCTAATATTACTAAGTCT+TGG | 0.472781 | 5.2:+20657822 | MS.gene036267:CDS |
| ACATCTAGTTTAGATTCTCT+TGG | 0.479424 | 5.2:+20657483 | MS.gene036267:CDS |
| AGTTCGCAGGCGGAGATCGC+AGG | 0.484913 | 5.2:+20661363 | MS.gene036267:CDS |
| CAACCTAATGGCAATGATTG+TGG | 0.497368 | 5.2:+20657764 | MS.gene036267:CDS |
| CAAGAACATGGCTTCAAGAT+GGG | 0.500638 | 5.2:+20654493 | MS.gene036267:CDS |
| TTGTTGGCAGGATATTATCA+AGG | 0.503688 | 5.2:+20662035 | MS.gene036267:intron |
| CCAAGAACATGGCTTCAAGA+TGG | 0.507821 | 5.2:+20654492 | MS.gene036267:CDS |
| GCTGGACCTGTGCAGACAGC+AGG | 0.510299 | 5.2:-20656397 | None:intergenic |
| GAAGTACTCTGACTTCTGGT+TGG | 0.526817 | 5.2:-20662095 | None:intergenic |
| GCCTAAATACCAGCAAATCC+AGG | 0.530431 | 5.2:-20655630 | None:intergenic |
| GATTATTATTGTTCCAAACA+AGG | 0.530481 | 5.2:+20654580 | MS.gene036267:CDS |
| ATTGAGGTGGTGCCATAACT+GGG | 0.531062 | 5.2:-20662061 | None:intergenic |
| CGAGCCAGTGCAGCGCGCGA+TGG | 0.532817 | 5.2:+20661309 | MS.gene036267:CDS |
| AGTACTTCTAGATTCATTGA+GGG | 0.539919 | 5.2:+20662110 | MS.gene036267:CDS |
| ATTATTATTGTTCCAAACAA+GGG | 0.540953 | 5.2:+20654581 | MS.gene036267:CDS |
| GAGAAGTTGAAATGGGCTGC+TGG | 0.546304 | 5.2:+20654776 | MS.gene036267:CDS |
| CAAATGTAACACCCTTGTCC+TGG | 0.550047 | 5.2:+20655612 | MS.gene036267:CDS |
| TACCTACAATCCAAGTACTC+TGG | 0.550651 | 5.2:+20655572 | MS.gene036267:CDS |
| CTTCTAGATTCATTGAGGGA+TGG | 0.553443 | 5.2:+20662114 | MS.gene036267:CDS |
| TGCAGCGCGCGATGGACTTG+AGG | 0.558579 | 5.2:+20661317 | MS.gene036267:CDS |
| GTACTCTGACTTCTGGTTGG+AGG | 0.562745 | 5.2:-20662092 | None:intergenic |
| GAGTACTTCTAGATTCATTG+AGG | 0.563275 | 5.2:+20662109 | MS.gene036267:CDS |
| GTTGGAGGAGCAGCATATTG+AGG | 0.575795 | 5.2:-20662077 | None:intergenic |
| AGAGTACTTGGATTGTAGGT+AGG | 0.577111 | 5.2:-20655570 | None:intergenic |
| TGGTCAAGTTGTGCATAGCA+AGG | 0.581013 | 5.2:+20654450 | MS.gene036267:CDS |
| GGAAGCACAGCAAAGTTCGC+AGG | 0.586394 | 5.2:+20661350 | MS.gene036267:CDS |
| TGGACTTGAGGTTGAAGTAG+TGG | 0.587335 | 5.2:+20661329 | MS.gene036267:CDS |
| TAATATTACTAAGTCTTGGA+TGG | 0.604101 | 5.2:+20657826 | MS.gene036267:CDS |
| TTTAAGAACAATGAACCAGA+AGG | 0.621796 | 5.2:+20654604 | MS.gene036267:CDS |
| TCGCAGGCGGAGATCGCAGG+TGG | 0.624194 | 5.2:+20661366 | MS.gene036267:CDS |
| AACCTCCCAAAACTGCTGCT+AGG | 0.625789 | 5.2:-20656445 | None:intergenic |
| AGCACAGCAAAGTTCGCAGG+CGG | 0.631487 | 5.2:+20661353 | MS.gene036267:CDS |
| ATACCAGCAAATCCAGGACA+AGG | 0.635286 | 5.2:-20655624 | None:intergenic |
| TATTACTAAGTCTTGGATGG+AGG | 0.643493 | 5.2:+20657829 | MS.gene036267:CDS |
| TTGAGGTGGTGCCATAACTG+GGG | 0.655930 | 5.2:-20662060 | None:intergenic |
| GGAGGAGCAGCATATTGAGG+TGG | 0.668820 | 5.2:-20662074 | None:intergenic |
| TATAACTTATACCAAGAACA+TGG | 0.669118 | 5.2:+20654481 | MS.gene036267:CDS |
| TGAGGTGGTGCCATAACTGG+GGG | 0.678392 | 5.2:-20662059 | None:intergenic |
| TACCAGCAAATCCAGGACAA+GGG | 0.688012 | 5.2:-20655623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 20654394 | 20662140 | 20654394 | ID=MS.gene036267 |
| chr5.2 | mRNA | 20654394 | 20662140 | 20654394 | ID=MS.gene036267.t1;Parent=MS.gene036267 |
| chr5.2 | exon | 20654394 | 20654633 | 20654394 | ID=MS.gene036267.t1.exon1;Parent=MS.gene036267.t1 |
| chr5.2 | CDS | 20654394 | 20654633 | 20654394 | ID=cds.MS.gene036267.t1;Parent=MS.gene036267.t1 |
| chr5.2 | exon | 20654725 | 20654804 | 20654725 | ID=MS.gene036267.t1.exon2;Parent=MS.gene036267.t1 |
| chr5.2 | CDS | 20654725 | 20654804 | 20654725 | ID=cds.MS.gene036267.t1;Parent=MS.gene036267.t1 |
| chr5.2 | exon | 20655567 | 20655642 | 20655567 | ID=MS.gene036267.t1.exon3;Parent=MS.gene036267.t1 |
| chr5.2 | CDS | 20655567 | 20655642 | 20655567 | ID=cds.MS.gene036267.t1;Parent=MS.gene036267.t1 |
| chr5.2 | exon | 20656388 | 20656497 | 20656388 | ID=MS.gene036267.t1.exon4;Parent=MS.gene036267.t1 |
| chr5.2 | CDS | 20656388 | 20656497 | 20656388 | ID=cds.MS.gene036267.t1;Parent=MS.gene036267.t1 |
| chr5.2 | exon | 20657330 | 20657352 | 20657330 | ID=MS.gene036267.t1.exon5;Parent=MS.gene036267.t1 |
| chr5.2 | CDS | 20657330 | 20657352 | 20657330 | ID=cds.MS.gene036267.t1;Parent=MS.gene036267.t1 |
| chr5.2 | exon | 20657436 | 20657525 | 20657436 | ID=MS.gene036267.t1.exon6;Parent=MS.gene036267.t1 |
| chr5.2 | CDS | 20657436 | 20657525 | 20657436 | ID=cds.MS.gene036267.t1;Parent=MS.gene036267.t1 |
| chr5.2 | exon | 20657609 | 20657652 | 20657609 | ID=MS.gene036267.t1.exon7;Parent=MS.gene036267.t1 |
| chr5.2 | CDS | 20657609 | 20657652 | 20657609 | ID=cds.MS.gene036267.t1;Parent=MS.gene036267.t1 |
| chr5.2 | exon | 20657764 | 20657850 | 20657764 | ID=MS.gene036267.t1.exon8;Parent=MS.gene036267.t1 |
| chr5.2 | CDS | 20657764 | 20657850 | 20657764 | ID=cds.MS.gene036267.t1;Parent=MS.gene036267.t1 |
| chr5.2 | exon | 20661297 | 20661395 | 20661297 | ID=MS.gene036267.t1.exon9;Parent=MS.gene036267.t1 |
| chr5.2 | CDS | 20661297 | 20661395 | 20661297 | ID=cds.MS.gene036267.t1;Parent=MS.gene036267.t1 |
| chr5.2 | exon | 20662045 | 20662140 | 20662045 | ID=MS.gene036267.t1.exon10;Parent=MS.gene036267.t1 |
| chr5.2 | CDS | 20662045 | 20662140 | 20662045 | ID=cds.MS.gene036267.t1;Parent=MS.gene036267.t1 |
| Gene Sequence |
| Protein sequence |