AlfalfaGEDB | MS.gene03628

M. sativa cultivar XinJiangDaYe / MS.gene03628

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03628.t1	KEH33404.1	83.2	184	25	3	27	204	3	186	8.30E-75	290

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03628.t1	A0A072UUA3	83.2	184	25	3	27	204	3	186	6.0e-75	290.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene03628.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03628.t1	MTR_3g437790	83.152	184	25	3	27	204	3	186	4.77e-99	285
MS.gene03628.t1	MTR_2g045020	61.081	185	64	6	18	198	1	181	6.95e-59	183
MS.gene03628.t1	MTR_8g022970	50.857	175	73	6	32	197	10	180	2.52e-46	151
MS.gene03628.t1	MTR_3g109930	51.656	151	69	3	48	196	16	164	2.30e-44	146
MS.gene03628.t1	MTR_2g105290	36.025	161	95	3	31	185	3	161	2.42e-23	92.0
MS.gene03628.t1	MTR_7g028448	37.594	133	73	2	53	185	31	153	2.00e-21	87.0
MS.gene03628.t1	MTR_4g036915	37.594	133	73	2	53	185	31	153	2.00e-21	87.0
MS.gene03628.t1	MTR_8g086290	35.032	157	94	3	35	185	7	161	2.20e-20	84.3
MS.gene03628.t1	MTR_5g053390	36.774	155	86	4	38	182	7	159	2.59e-18	80.5
MS.gene03628.t1	MTR_4g127140	33.803	142	84	3	53	185	31	171	6.49e-17	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03628.t1	AT5G60440	31.757	148	92	4	53	194	26	170	2.45e-16	75.9
MS.gene03628.t1	AT2G24840	28.090	178	106	5	25	192	63	228	4.49e-16	74.7
MS.gene03628.t1	AT3G66656	51.020	49	24	0	53	101	21	69	3.91e-12	62.4
MS.gene03628.t1	AT4G36590	28.571	161	97	5	38	182	5	163	9.39e-12	62.8
MS.gene03628.t1	AT2G34440	29.508	122	80	2	53	171	21	139	1.67e-11	60.8
MS.gene03628.t1	AT1G65360	29.114	158	93	5	38	182	5	156	2.77e-11	61.2

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Find 33 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACAAGTTCTATGCATG+TGG	0.619639	3.4:-33921625	MS.gene03628:CDS
ACATGCATAGAACTTGTTGT+TGG	0.594378	3.4:+33921627	None:intergenic
AGGAAAACTTAAAGAAGAGA+AGG	0.524858	3.4:-33921479	MS.gene03628:CDS
ATGATGTTGTTGAAACCCTA+AGG	0.589934	3.4:-33921522	MS.gene03628:CDS
CAACACACGGAAGAGAAAGA+AGG	0.527351	3.4:-33921764	MS.gene03628:CDS
CATGCATAGAACTTGTTGTT+GGG	0.522753	3.4:+33921628	None:intergenic
CCCTTCTCGAAACTCAAACT+CGG	0.552196	3.4:-33921718	MS.gene03628:CDS
CCGAGTTTGAGTTTCGAGAA+GGG	0.532852	3.4:+33921718	None:intergenic
CGATGAGTGCAGTTTCTGAT+TGG	0.423120	3.4:+33921659	None:intergenic
CGCTTCATATCGAAGCCTTA+GGG	0.430275	3.4:+33921507	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAAAACTTAAAGAAGAGA+AGG	-	chr3.4:33921889-33921908	MS.gene03628:intron	30.0%
GATATTGAATGAAACCAACT+GGG	-	chr3.4:33921520-33921539	MS.gene03628:CDS	30.0%
GTCTAAGAAGAAAATTCCAA+TGG	-	chr3.4:33921568-33921587	MS.gene03628:CDS	30.0%
TAACACACATTCTCTTGAAT+TGG	+	chr3.4:33922091-33922110	None:intergenic	30.0%
TAAGAAGAAAATTCCAATGG+CGG	-	chr3.4:33921571-33921590	MS.gene03628:CDS	30.0%
TGATATTGAATGAAACCAAC+TGG	-	chr3.4:33921519-33921538	MS.gene03628:CDS	30.0%
TTATGTGAATAAACTTGGCT+AGG	+	chr3.4:33921413-33921432	None:intergenic	30.0%
AACAACAAGTTCTATGCATG+TGG	-	chr3.4:33921743-33921762	MS.gene03628:CDS	35.0%
ATGATGTTGTTGAAACCCTA+AGG	-	chr3.4:33921846-33921865	MS.gene03628:CDS	35.0%
GAAGGATGAAATCAAGAAAG+AGG	-	chr3.4:33921622-33921641	MS.gene03628:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	33921279	33922111	33921279	ID=MS.gene03628
chr3.4	mRNA	33921279	33922111	33921279	ID=MS.gene03628.t1;Parent=MS.gene03628
chr3.4	exon	33922105	33922111	33922105	ID=MS.gene03628.t1.exon1;Parent=MS.gene03628.t1
chr3.4	CDS	33922105	33922111	33922105	ID=cds.MS.gene03628.t1;Parent=MS.gene03628.t1
chr3.4	exon	33921279	33921886	33921279	ID=MS.gene03628.t1.exon2;Parent=MS.gene03628.t1
chr3.4	CDS	33921279	33921886	33921279	ID=cds.MS.gene03628.t1;Parent=MS.gene03628.t1

Gene Sequence

>MS.gene03628

ATGGATGGTACGGCTCTATCTTCATATTTGTGTTGTTTATTTGTTAAATCTTATTTTTTCTTCATATTATTTTAATATTTTTTCTTGTTTTGTAACCAAGAAAGTGCGTGATTAGGGTTTTTACCCTATGGCCTAGCCAAGTTTATTCACATAAAACAAGAAAGTGTGTGATTTCAGACTTTGTGGGTTTCTATTTTAATTTTATTTTGTTTTGTATCTTATCAGATAATTCTTCATCAGTGATATTGAATGAAACCAACTGGGACAACATGAATAAGAATGGTGAAACGTCTAAGAAGAAAATTCCAATGGCGGCCGAGAGAAACAACACACGGAAGAGAAAGAAGGATGAAATCAAGAAAGAGGAAAAGCCCTTCTCGAAACTCAAACTCGGAATTTTCAACAAAGCAATAGAGCTATCTATTCTATGCCAATCAGAAACTGCACTCATCGTAACATCACCCAACAACAAGTTCTATGCATGTGGCTACCCTAACTATGATGCTGTCATTCAGCGTTTTCTGACCGGACATATGGACGAGGATGAGAAAAATAAGCAAGAAGATGATGATGTTGTTGAAACCCTAAGGCTTCGATATGAAGCGATTCAAGGAAAACTTAAAGAAGAGAAGGAGAAATTGCAAGCTGTCAAAGATGCACAAAAGAGTAATTTTGATTTGCCTGCTGATTGGTGGAATAAATCTATTGATGATATGGATTTAACATCTCTTGAAGATATTACGACTTCTTTGAATAAATTGAAGATTAATTTGTCCGTAGCAAGCGAAGCGAAGAAGTTCAATTTACATCCAATTCAAGAGAATGTGTGTTAA

Protein sequence

>MS.gene03628.t1

MDDNSSSVILNETNWDNMNKNGETSKKKIPMAAERNNTRKRKKDEIKKEEKPFSKLKLGIFNKAIELSILCQSETALIVTSPNNKFYACGYPNYDAVIQRFLTGHMDEDEKNKQEDDDVVETLRLRYEAIQGKLKEEKEKLQAVKDAQKSNFDLPADWWNKSIDDMDLTSLEDITTSLNKLKINLSVASEAKKFNLHPIQENVC