Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036304.t1 | XP_004490690.1 | 47.5 | 661 | 124 | 3 | 1 | 440 | 1 | 659 | 2.40E-151 | 545.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036304.t1 | Q9SZL8 | 19.8 | 607 | 236 | 8 | 6 | 361 | 69 | 675 | 2.4e-27 | 124.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036304.t1 | A0A1S2XKF4 | 47.5 | 661 | 124 | 3 | 1 | 440 | 1 | 659 | 1.7e-151 | 545.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene036304.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036304.t1 | MTR_7g074790 | 55.056 | 178 | 61 | 2 | 1 | 177 | 1 | 160 | 5.77e-61 | 198 |
| MS.gene036304.t1 | MTR_5g039760 | 52.688 | 186 | 62 | 3 | 1 | 184 | 1 | 162 | 7.06e-60 | 194 |
| MS.gene036304.t1 | MTR_0402s0040 | 28.477 | 453 | 278 | 12 | 10 | 442 | 26 | 452 | 4.89e-46 | 166 |
| MS.gene036304.t1 | MTR_7g061980 | 55.462 | 119 | 52 | 1 | 1 | 118 | 1 | 119 | 2.19e-42 | 146 |
| MS.gene036304.t1 | MTR_4g102720 | 34.524 | 168 | 77 | 1 | 7 | 174 | 4 | 138 | 2.93e-30 | 117 |
| MS.gene036304.t1 | MTR_2g099430 | 44.000 | 100 | 53 | 2 | 22 | 118 | 13 | 112 | 4.30e-20 | 85.9 |
| MS.gene036304.t1 | MTR_1g083640 | 32.323 | 198 | 108 | 7 | 8 | 183 | 52 | 245 | 4.06e-18 | 84.7 |
| MS.gene036304.t1 | MTR_0558s0020 | 31.818 | 198 | 109 | 6 | 8 | 183 | 37 | 230 | 5.88e-18 | 84.3 |
| MS.gene036304.t1 | MTR_4g069880 | 51.562 | 64 | 31 | 0 | 1 | 64 | 1 | 64 | 1.46e-17 | 77.0 |
| MS.gene036304.t1 | MTR_5g015480 | 37.705 | 122 | 73 | 2 | 10 | 128 | 56 | 177 | 4.36e-17 | 81.3 |
| MS.gene036304.t1 | MTR_2g014100 | 31.313 | 198 | 110 | 6 | 8 | 183 | 45 | 238 | 1.22e-16 | 79.7 |
| MS.gene036304.t1 | MTR_7g113010 | 36.508 | 126 | 65 | 2 | 10 | 133 | 457 | 569 | 7.02e-16 | 80.5 |
| MS.gene036304.t1 | MTR_1g070355 | 28.144 | 167 | 112 | 3 | 14 | 174 | 78 | 242 | 5.67e-15 | 77.4 |
| MS.gene036304.t1 | MTR_1g019850 | 30.827 | 133 | 84 | 3 | 10 | 140 | 70 | 196 | 6.02e-15 | 74.7 |
| MS.gene036304.t1 | MTR_3g058090 | 36.585 | 123 | 54 | 3 | 298 | 420 | 5 | 103 | 9.32e-15 | 70.5 |
| MS.gene036304.t1 | MTR_6g090505 | 24.296 | 284 | 151 | 8 | 50 | 269 | 16 | 299 | 3.27e-14 | 74.3 |
| MS.gene036304.t1 | MTR_1g057920 | 39.326 | 89 | 51 | 2 | 10 | 95 | 34 | 122 | 9.82e-14 | 68.2 |
| MS.gene036304.t1 | MTR_1g013060 | 30.000 | 170 | 112 | 3 | 7 | 169 | 21 | 190 | 1.73e-13 | 70.1 |
| MS.gene036304.t1 | MTR_5g076070 | 30.000 | 160 | 108 | 3 | 13 | 168 | 56 | 215 | 3.03e-13 | 70.5 |
| MS.gene036304.t1 | MTR_6g017200 | 37.805 | 82 | 50 | 1 | 10 | 90 | 58 | 139 | 3.07e-13 | 67.8 |
| MS.gene036304.t1 | MTR_5g045210 | 32.381 | 105 | 68 | 2 | 300 | 403 | 20 | 122 | 4.75e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036304.t1 | AT4G38180 | 32.022 | 178 | 116 | 3 | 6 | 178 | 69 | 246 | 6.98e-21 | 96.3 |
| MS.gene036304.t1 | AT4G38180 | 29.167 | 96 | 68 | 0 | 182 | 277 | 420 | 515 | 3.90e-13 | 72.0 |
| MS.gene036304.t1 | AT4G15090 | 31.609 | 174 | 93 | 7 | 262 | 424 | 557 | 715 | 1.21e-15 | 80.1 |
| MS.gene036304.t1 | AT4G15090 | 29.032 | 186 | 124 | 5 | 3 | 183 | 44 | 226 | 1.86e-13 | 73.2 |
| MS.gene036304.t1 | AT4G15090 | 31.609 | 174 | 93 | 7 | 262 | 424 | 557 | 715 | 1.21e-15 | 80.1 |
| MS.gene036304.t1 | AT4G15090 | 29.032 | 186 | 124 | 5 | 3 | 183 | 44 | 226 | 1.86e-13 | 73.2 |
| MS.gene036304.t1 | AT4G15090 | 31.609 | 174 | 93 | 7 | 262 | 424 | 557 | 715 | 1.21e-15 | 80.1 |
| MS.gene036304.t1 | AT4G15090 | 29.032 | 186 | 124 | 5 | 3 | 183 | 44 | 226 | 1.86e-13 | 73.2 |
| MS.gene036304.t1 | AT4G15090 | 31.609 | 174 | 93 | 7 | 262 | 424 | 557 | 715 | 1.21e-15 | 80.1 |
| MS.gene036304.t1 | AT4G15090 | 29.032 | 186 | 124 | 5 | 3 | 183 | 44 | 226 | 1.86e-13 | 73.2 |
| MS.gene036304.t1 | AT4G15090 | 31.609 | 174 | 93 | 7 | 262 | 424 | 557 | 715 | 1.21e-15 | 80.1 |
| MS.gene036304.t1 | AT4G15090 | 29.032 | 186 | 124 | 5 | 3 | 183 | 44 | 226 | 1.86e-13 | 73.2 |
| MS.gene036304.t1 | AT5G18960 | 42.718 | 103 | 44 | 4 | 9 | 109 | 42 | 131 | 2.21e-14 | 75.9 |
| MS.gene036304.t1 | AT5G18960 | 42.718 | 103 | 44 | 4 | 9 | 109 | 42 | 131 | 2.21e-14 | 75.9 |
| MS.gene036304.t1 | AT5G28530 | 27.811 | 169 | 116 | 4 | 8 | 170 | 53 | 221 | 6.00e-13 | 71.2 |
| MS.gene036304.t1 | AT5G28530 | 27.811 | 169 | 116 | 4 | 8 | 170 | 53 | 221 | 6.70e-13 | 71.2 |
| MS.gene036304.t1 | AT5G28530 | 27.811 | 169 | 116 | 4 | 8 | 170 | 53 | 221 | 7.07e-13 | 71.2 |
| MS.gene036304.t1 | AT5G28530 | 27.811 | 169 | 116 | 4 | 8 | 170 | 53 | 221 | 7.63e-13 | 70.9 |
| MS.gene036304.t1 | AT5G28530 | 27.811 | 169 | 116 | 4 | 8 | 170 | 53 | 221 | 7.63e-13 | 70.9 |
| MS.gene036304.t1 | AT3G06250 | 38.835 | 103 | 48 | 4 | 9 | 109 | 27 | 116 | 3.57e-12 | 68.9 |
| MS.gene036304.t1 | AT3G06250 | 38.043 | 92 | 54 | 1 | 268 | 356 | 646 | 737 | 9.92e-11 | 64.3 |
| MS.gene036304.t1 | AT3G06250 | 38.835 | 103 | 48 | 4 | 9 | 109 | 27 | 116 | 3.57e-12 | 68.9 |
| MS.gene036304.t1 | AT3G06250 | 38.043 | 92 | 54 | 1 | 268 | 356 | 646 | 737 | 9.92e-11 | 64.3 |
| MS.gene036304.t1 | AT3G06250 | 38.835 | 103 | 48 | 4 | 9 | 109 | 27 | 116 | 3.57e-12 | 68.9 |
| MS.gene036304.t1 | AT3G06250 | 38.043 | 92 | 54 | 1 | 268 | 356 | 646 | 737 | 9.92e-11 | 64.3 |
Find 59 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTGTATGCAACCGAATT+TGG | 0.167798 | 5.3:+19062448 | MS.gene036304:CDS |
| TAGATGAAGTTCATCAATTT+TGG | 0.174539 | 5.3:+19061263 | MS.gene036304:CDS |
| ATTGATTTGGCTAATGATTC+TGG | 0.243805 | 5.3:+19061601 | MS.gene036304:CDS |
| CAGTTTCAAGTAATGTTTCT+AGG | 0.273436 | 5.3:+19063141 | MS.gene036304:CDS |
| GTTGTCTCAAATTTCATAAA+AGG | 0.301460 | 5.3:+19062987 | MS.gene036304:CDS |
| TATGCTTATCTTCAAATTCA+TGG | 0.305536 | 5.3:-19061501 | None:intergenic |
| TGTAGAAAGTTTGAAACATT+TGG | 0.316097 | 5.3:+19062789 | MS.gene036304:CDS |
| TGGCTTCCAATCAACATTTA+CGG | 0.338693 | 5.3:-19061215 | None:intergenic |
| GTGGCGTTGTGCAAGATGTT+AGG | 0.347695 | 5.3:+19062910 | MS.gene036304:CDS |
| GTCATGAATGCCGTTGTCTT+TGG | 0.359484 | 5.3:-19063105 | None:intergenic |
| TATGCTGCACGTACTGGCTT+TGG | 0.360264 | 5.3:+19061292 | MS.gene036304:CDS |
| CTTGCTTATGCTGCACGTAC+TGG | 0.365082 | 5.3:+19061286 | MS.gene036304:CDS |
| AATTGCATGATTTCCAAATT+CGG | 0.367504 | 5.3:-19062461 | None:intergenic |
| GACCCAAGCTGCTTCAAAAT+CGG | 0.376338 | 5.3:-19062273 | None:intergenic |
| TGTCATGCGTAAGAAAATAA+TGG | 0.385423 | 5.3:+19063067 | MS.gene036304:CDS |
| TAAAAGAAGACAAAGAAGTA+TGG | 0.394624 | 5.3:+19061720 | MS.gene036304:CDS |
| ACAAGCACATGAGATTGATT+TGG | 0.396994 | 5.3:+19061588 | MS.gene036304:CDS |
| CTTCGTGTTCTAGACAACTT+TGG | 0.403555 | 5.3:-19062954 | None:intergenic |
| AAACATTACTTGAAACTGTT+GGG | 0.416514 | 5.3:-19063136 | None:intergenic |
| TCAAATTTCATTCCAACCCT+TGG | 0.416794 | 5.3:-19061235 | None:intergenic |
| CTTCTTAAAATATACTTCTC+AGG | 0.433030 | 5.3:-19062867 | None:intergenic |
| ATGTAGATTTGTTTGTTGTA+AGG | 0.434039 | 5.3:+19061363 | MS.gene036304:CDS |
| GAAACATTACTTGAAACTGT+TGG | 0.441612 | 5.3:-19063137 | None:intergenic |
| TGACATCCGTAAATGTTGAT+TGG | 0.442141 | 5.3:+19061209 | MS.gene036304:CDS |
| AGTATGGTGTACGGCGAAGC+TGG | 0.445980 | 5.3:+19061736 | MS.gene036304:CDS |
| GCAAGCATGTGTGTTGTCTC+TGG | 0.449397 | 5.3:-19061541 | None:intergenic |
| TGGCGTTGTGCAAGATGTTA+GGG | 0.450029 | 5.3:+19062911 | MS.gene036304:CDS |
| ATCTTGCACAACGCCACTTC+GGG | 0.465364 | 5.3:-19062904 | None:intergenic |
| ATCACACTTACACGTTATGA+TGG | 0.466378 | 5.3:+19061466 | MS.gene036304:CDS |
| AGATTTGTTTGTTGTAAGGA+AGG | 0.482622 | 5.3:+19061367 | MS.gene036304:CDS |
| TAAAATATACTTCTCAGGAA+TGG | 0.483384 | 5.3:-19062862 | None:intergenic |
| CATCTTGCACAACGCCACTT+CGG | 0.498150 | 5.3:-19062905 | None:intergenic |
| CGCAAAAGCGACATAAGAGT+TGG | 0.506849 | 5.3:+19063207 | MS.gene036304:CDS |
| AGTTTCAAGTAATGTTTCTA+GGG | 0.511152 | 5.3:+19063142 | MS.gene036304:CDS |
| AGCATAAACTGATTTGATCC+AGG | 0.534474 | 5.3:-19062330 | None:intergenic |
| CAACTTATGAGCACACATGC+AGG | 0.539062 | 5.3:+19061646 | MS.gene036304:CDS |
| GTTGATTGGAAGCCAAGGGT+TGG | 0.540661 | 5.3:+19061223 | MS.gene036304:CDS |
| TACACGTTATGATGGGAAGT+TGG | 0.549441 | 5.3:+19061474 | MS.gene036304:CDS |
| GATTTGTTTGTTGTAAGGAA+GGG | 0.580884 | 5.3:+19061368 | MS.gene036304:CDS |
| CTACATGGTTGCTCTCTAGG+TGG | 0.583984 | 5.3:-19063264 | None:intergenic |
| AGTCCTCACATAAGCTTGCA+AGG | 0.585698 | 5.3:+19062546 | MS.gene036304:CDS |
| ATGATCTTCATGATAACACC+TGG | 0.589928 | 5.3:+19062312 | MS.gene036304:CDS |
| AACTTATGAGCACACATGCA+GGG | 0.592671 | 5.3:+19061647 | MS.gene036304:CDS |
| AAATGTTGATTGGAAGCCAA+GGG | 0.593917 | 5.3:+19061219 | MS.gene036304:CDS |
| GCAGGGCATAGATCTAATGT+TGG | 0.596510 | 5.3:+19061664 | MS.gene036304:CDS |
| TAAATGTTGATTGGAAGCCA+AGG | 0.602713 | 5.3:+19061218 | MS.gene036304:CDS |
| AGACAAAGAAGTATGGTGTA+CGG | 0.604725 | 5.3:+19061727 | MS.gene036304:CDS |
| TTTCATAAAAGGTGCAGCTG+AGG | 0.605578 | 5.3:+19062998 | MS.gene036304:CDS |
| TGAGGCATCACCTTGTGAAG+AGG | 0.612403 | 5.3:+19063016 | MS.gene036304:CDS |
| TCACACTTACACGTTATGAT+GGG | 0.613020 | 5.3:+19061467 | MS.gene036304:CDS |
| ATGAAGAAAGCAGTAACACT+TGG | 0.614713 | 5.3:+19062380 | MS.gene036304:CDS |
| CGGTCAAACGCCAAAGACAA+CGG | 0.631949 | 5.3:+19063095 | MS.gene036304:CDS |
| TCTCTGGAGATAGCAGCTCA+TGG | 0.634385 | 5.3:-19061525 | None:intergenic |
| TAATGTTGGATTTACACGAG+TGG | 0.643534 | 5.3:+19061678 | MS.gene036304:CDS |
| GGCGTTGTGCAAGATGTTAG+GGG | 0.670016 | 5.3:+19062912 | MS.gene036304:CDS |
| TAACCTTGCAAGCTTATGTG+AGG | 0.674762 | 5.3:-19062549 | None:intergenic |
| TGGACAAGAGATGCCCGAAG+TGG | 0.678714 | 5.3:+19062891 | MS.gene036304:CDS |
| GCGTTGTGCAAGATGTTAGG+GGG | 0.680564 | 5.3:+19062913 | MS.gene036304:CDS |
| GTAAGAAAATAATGGAACGT+CGG | 0.713792 | 5.3:+19063075 | MS.gene036304:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGCTATTAAAAAAAAAT+GGG | + | chr5.3:19062346-19062365 | MS.gene036304:CDS | 10.0% |
| !! | TTTATGCTATTAAAAAAAAA+TGG | + | chr5.3:19062345-19062364 | MS.gene036304:CDS | 10.0% |
| !!! | AATTCTTCAAACATTTTGAA+CGG | + | chr5.3:19062480-19062499 | MS.gene036304:CDS | 20.0% |
| !!! | ATAAACACTATCCAATATTT+TGG | - | chr5.3:19062737-19062756 | None:intergenic | 20.0% |
| ! | AAACATTACTTGAAACTGTT+GGG | - | chr5.3:19063139-19063158 | None:intergenic | 25.0% |
| ! | AATTGCATGATTTCCAAATT+CGG | - | chr5.3:19062464-19062483 | None:intergenic | 25.0% |
| ! | ATGTGAATATGTCATTACTA+TGG | + | chr5.3:19062703-19062722 | MS.gene036304:intron | 25.0% |
| ! | CTTCTTAAAATATACTTCTC+AGG | - | chr5.3:19062870-19062889 | None:intergenic | 25.0% |
| ! | GTTGTCTCAAATTTCATAAA+AGG | + | chr5.3:19062987-19063006 | MS.gene036304:CDS | 25.0% |
| ! | TAAAAGAAGACAAAGAAGTA+TGG | + | chr5.3:19061720-19061739 | MS.gene036304:CDS | 25.0% |
| ! | TAAAATATACTTCTCAGGAA+TGG | - | chr5.3:19062865-19062884 | None:intergenic | 25.0% |
| ! | TATGCGAACAAAAATAAAGA+CGG | + | chr5.3:19061328-19061347 | MS.gene036304:CDS | 25.0% |
| ! | TATGCTTATCTTCAAATTCA+TGG | - | chr5.3:19061504-19061523 | None:intergenic | 25.0% |
| ! | TGTGAATATGTCATTACTAT+GGG | + | chr5.3:19062704-19062723 | MS.gene036304:intron | 25.0% |
| !! | AACAAATGACAAATGTGTTT+TGG | + | chr5.3:19061836-19061855 | MS.gene036304:intron | 25.0% |
| !! | AGTTTCAAGTAATGTTTCTA+GGG | + | chr5.3:19063142-19063161 | MS.gene036304:CDS | 25.0% |
| !! | ATTCTTCAAACATTTTGAAC+GGG | + | chr5.3:19062481-19062500 | MS.gene036304:CDS | 25.0% |
| !! | TAGATGAAGTTCATCAATTT+TGG | + | chr5.3:19061263-19061282 | MS.gene036304:CDS | 25.0% |
| !! | TGTAGAAAGTTTGAAACATT+TGG | + | chr5.3:19062789-19062808 | MS.gene036304:CDS | 25.0% |
| !!! | AGAAGTATATTTTAAGAAGG+TGG | + | chr5.3:19062871-19062890 | MS.gene036304:CDS | 25.0% |
| !!! | ATGTAGATTTGTTTGTTGTA+AGG | + | chr5.3:19061363-19061382 | MS.gene036304:CDS | 25.0% |
| !!! | CTGAGAAGTATATTTTAAGA+AGG | + | chr5.3:19062868-19062887 | MS.gene036304:CDS | 25.0% |
| AGACAAGTGATTCATTTAAG+TGG | + | chr5.3:19062018-19062037 | MS.gene036304:intron | 30.0% | |
| CAAAATGGAATTAAACACCT+TGG | + | chr5.3:19062179-19062198 | MS.gene036304:intron | 30.0% | |
| GAAACATTACTTGAAACTGT+TGG | - | chr5.3:19063140-19063159 | None:intergenic | 30.0% | |
| GTGAATATGTCATTACTATG+GGG | + | chr5.3:19062705-19062724 | MS.gene036304:intron | 30.0% | |
| TGAATATGTCATTACTATGG+GGG | + | chr5.3:19062706-19062725 | MS.gene036304:intron | 30.0% | |
| TGATATGCATGAAAGAAAGA+TGG | - | chr5.3:19061802-19061821 | None:intergenic | 30.0% | |
| TGTCATGCGTAAGAAAATAA+TGG | + | chr5.3:19063067-19063086 | MS.gene036304:CDS | 30.0% | |
| TTTCTTTCATGCATATCAGA+TGG | + | chr5.3:19061804-19061823 | MS.gene036304:intron | 30.0% | |
| ! | ATATTTTCAGCGACAATTGT+TGG | + | chr5.3:19061771-19061790 | MS.gene036304:intron | 30.0% |
| ! | ATTTTGGATTACGCGTATTT+TGG | + | chr5.3:19061874-19061893 | MS.gene036304:intron | 30.0% |
| ! | CAGTTTCAAGTAATGTTTCT+AGG | + | chr5.3:19063141-19063160 | MS.gene036304:CDS | 30.0% |
| ! | GTAAGAAAATAATGGAACGT+CGG | + | chr5.3:19063075-19063094 | MS.gene036304:CDS | 30.0% |
| ! | GTGTGATGCAAATATGATTT+TGG | + | chr5.3:19061858-19061877 | MS.gene036304:intron | 30.0% |
| !! | AGATTTGTTTGTTGTAAGGA+AGG | + | chr5.3:19061367-19061386 | MS.gene036304:CDS | 30.0% |
| !! | ATTGATTTGGCTAATGATTC+TGG | + | chr5.3:19061601-19061620 | MS.gene036304:CDS | 30.0% |
| !! | GATTTGTTTGTTGTAAGGAA+GGG | + | chr5.3:19061368-19061387 | MS.gene036304:CDS | 30.0% |
| !!! | GGTTTTTTCTTGAATATCGT+TGG | - | chr5.3:19063170-19063189 | None:intergenic | 30.0% |
| AAACCAGAAAACAAAGCAAG+AGG | - | chr5.3:19061948-19061967 | None:intergenic | 35.0% | |
| ACAAGCACATGAGATTGATT+TGG | + | chr5.3:19061588-19061607 | MS.gene036304:CDS | 35.0% | |
| ATCACACTTACACGTTATGA+TGG | + | chr5.3:19061466-19061485 | MS.gene036304:CDS | 35.0% | |
| ATCTTGTATGCAACCGAATT+TGG | + | chr5.3:19062448-19062467 | MS.gene036304:CDS | 35.0% | |
| ATGAAGAAAGCAGTAACACT+TGG | + | chr5.3:19062380-19062399 | MS.gene036304:CDS | 35.0% | |
| ATGATCTTCATGATAACACC+TGG | + | chr5.3:19062312-19062331 | MS.gene036304:CDS | 35.0% | |
| CTTTCTACAACTACAAGCAA+TGG | - | chr5.3:19062778-19062797 | None:intergenic | 35.0% | |
| TAATGTTGGATTTACACGAG+TGG | + | chr5.3:19061678-19061697 | MS.gene036304:CDS | 35.0% | |
| TCAAATTTCATTCCAACCCT+TGG | - | chr5.3:19061238-19061257 | None:intergenic | 35.0% | |
| TCACACTTACACGTTATGAT+GGG | + | chr5.3:19061467-19061486 | MS.gene036304:CDS | 35.0% | |
| TCACCAATACTGATCCAAAT+GGG | + | chr5.3:19062584-19062603 | MS.gene036304:intron | 35.0% | |
| TGACATCCGTAAATGTTGAT+TGG | + | chr5.3:19061209-19061228 | MS.gene036304:CDS | 35.0% | |
| TGGCTTCCAATCAACATTTA+CGG | - | chr5.3:19061218-19061237 | None:intergenic | 35.0% | |
| ! | AAATGTTGATTGGAAGCCAA+GGG | + | chr5.3:19061219-19061238 | MS.gene036304:CDS | 35.0% |
| ! | AGACAAAGAAGTATGGTGTA+CGG | + | chr5.3:19061727-19061746 | MS.gene036304:CDS | 35.0% |
| ! | TAAATGTTGATTGGAAGCCA+AGG | + | chr5.3:19061218-19061237 | MS.gene036304:CDS | 35.0% |
| !! | AGCATAAACTGATTTGATCC+AGG | - | chr5.3:19062333-19062352 | None:intergenic | 35.0% |
| !!! | ATTTTGAGATCCTCTTCACA+AGG | - | chr5.3:19063029-19063048 | None:intergenic | 35.0% |
| !!! | GATTCAGACTCTTTTTTCTC+TGG | - | chr5.3:19062680-19062699 | None:intergenic | 35.0% |
| !!! | TAGGTGGAGCACTTTTTTTT+CGG | - | chr5.3:19063251-19063270 | None:intergenic | 35.0% |
| AACTTATGAGCACACATGCA+GGG | + | chr5.3:19061647-19061666 | MS.gene036304:CDS | 40.0% | |
| ACACCTTGGAAACAAGATGA+AGG | + | chr5.3:19062193-19062212 | MS.gene036304:intron | 40.0% | |
| ACTTGGCACTTGTGTCAAAA+TGG | + | chr5.3:19062164-19062183 | MS.gene036304:intron | 40.0% | |
| CACCAATACTGATCCAAATG+GGG | + | chr5.3:19062585-19062604 | MS.gene036304:intron | 40.0% | |
| CACCTTGGAAACAAGATGAA+GGG | + | chr5.3:19062194-19062213 | MS.gene036304:intron | 40.0% | |
| GTCACCAATACTGATCCAAA+TGG | + | chr5.3:19062583-19062602 | MS.gene036304:intron | 40.0% | |
| GTGTGTATACTTTCCCCATT+TGG | - | chr5.3:19062601-19062620 | None:intergenic | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | - | chr5.3:19062552-19062571 | None:intergenic | 40.0% | |
| TCTACAACTACAAGCAATGG+AGG | - | chr5.3:19062775-19062794 | None:intergenic | 40.0% | |
| TGGGGGAACTTCCAAAATAT+TGG | + | chr5.3:19062723-19062742 | MS.gene036304:intron | 40.0% | |
| TTCCCCATTTGGATCAGTAT+TGG | - | chr5.3:19062590-19062609 | None:intergenic | 40.0% | |
| ! | CTTCGTGTTCTAGACAACTT+TGG | - | chr5.3:19062957-19062976 | None:intergenic | 40.0% |
| ! | TACACGTTATGATGGGAAGT+TGG | + | chr5.3:19061474-19061493 | MS.gene036304:CDS | 40.0% |
| ! | TTTCATAAAAGGTGCAGCTG+AGG | + | chr5.3:19062998-19063017 | MS.gene036304:CDS | 40.0% |
| !! | TTTCTGGTTTCAACCACTAC+CGG | + | chr5.3:19061958-19061977 | MS.gene036304:intron | 40.0% |
| !!! | AGACCTCTTGCTTTGTTTTC+TGG | + | chr5.3:19061942-19061961 | MS.gene036304:intron | 40.0% |
| !!! | ATTTTGGTGATGTCGTGCAT+TGG | + | chr5.3:19061890-19061909 | MS.gene036304:intron | 40.0% |
| AAGCAAGAGGTCTATTCGCA+TGG | - | chr5.3:19061935-19061954 | None:intergenic | 45.0% | |
| AGTCCTCACATAAGCTTGCA+AGG | + | chr5.3:19062546-19062565 | MS.gene036304:CDS | 45.0% | |
| AGTGCCAAGTGCATAAACCA+TGG | - | chr5.3:19062154-19062173 | None:intergenic | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | + | chr5.3:19061646-19061665 | MS.gene036304:CDS | 45.0% | |
| CATAAACCATGGTGAGTCTC+GGG | - | chr5.3:19062143-19062162 | None:intergenic | 45.0% | |
| CGCAAAAGCGACATAAGAGT+TGG | + | chr5.3:19063207-19063226 | MS.gene036304:CDS | 45.0% | |
| CTCACCATGGTTTATGCACT+TGG | + | chr5.3:19062147-19062166 | MS.gene036304:intron | 45.0% | |
| CTTGGAAACAAGATGAAGGG+AGG | + | chr5.3:19062197-19062216 | MS.gene036304:intron | 45.0% | |
| GACCCAAGCTGCTTCAAAAT+CGG | - | chr5.3:19062276-19062295 | None:intergenic | 45.0% | |
| GCAGGGCATAGATCTAATGT+TGG | + | chr5.3:19061664-19061683 | MS.gene036304:CDS | 45.0% | |
| GCATAAACCATGGTGAGTCT+CGG | - | chr5.3:19062144-19062163 | None:intergenic | 45.0% | |
| GTCATGAATGCCGTTGTCTT+TGG | - | chr5.3:19063108-19063127 | None:intergenic | 45.0% | |
| TGATCGGTGAAGACAGTCTT+TGG | - | chr5.3:19062083-19062102 | None:intergenic | 45.0% | |
| TGGCGTTGTGCAAGATGTTA+GGG | + | chr5.3:19062911-19062930 | MS.gene036304:CDS | 45.0% | |
| TGTCTTCACCGATCAAGATC+CGG | + | chr5.3:19062088-19062107 | MS.gene036304:intron | 45.0% | |
| ! | CTCCCTTCATCTTGTTTCCA+AGG | - | chr5.3:19062199-19062218 | None:intergenic | 45.0% |
| ! | TGCGATGCTCTTTTTGTGCT+AGG | - | chr5.3:19063191-19063210 | None:intergenic | 45.0% |
| !! | TTCTGGTTTCAACCACTACC+GGG | + | chr5.3:19061959-19061978 | MS.gene036304:intron | 45.0% |
| !!! | AAGCCGATTTTGAAGCAGCT+TGG | + | chr5.3:19062270-19062289 | MS.gene036304:intron | 45.0% |
| !!! | AGCCGATTTTGAAGCAGCTT+GGG | + | chr5.3:19062271-19062290 | MS.gene036304:intron | 45.0% |
| ATCTTGCACAACGCCACTTC+GGG | - | chr5.3:19062907-19062926 | None:intergenic | 50.0% | |
| CACCAAAAATGACCGAACCC+CGG | - | chr5.3:19061980-19061999 | None:intergenic | 50.0% | |
| CATCACTTCAGCAAGTGCCT+TGG | - | chr5.3:19062120-19062139 | None:intergenic | 50.0% | |
| CATCTTGCACAACGCCACTT+CGG | - | chr5.3:19062908-19062927 | None:intergenic | 50.0% | |
| CGGTCAAACGCCAAAGACAA+CGG | + | chr5.3:19063095-19063114 | MS.gene036304:CDS | 50.0% | |
| CTTGCTTATGCTGCACGTAC+TGG | + | chr5.3:19061286-19061305 | MS.gene036304:CDS | 50.0% | |
| GCAAGATGTTAGGGGGAAGA+CGG | + | chr5.3:19062920-19062939 | MS.gene036304:CDS | 50.0% | |
| GCAAGCATGTGTGTTGTCTC+TGG | - | chr5.3:19061544-19061563 | None:intergenic | 50.0% | |
| GCGTTGTGCAAGATGTTAGG+GGG | + | chr5.3:19062913-19062932 | MS.gene036304:CDS | 50.0% | |
| GGCGTTGTGCAAGATGTTAG+GGG | + | chr5.3:19062912-19062931 | MS.gene036304:CDS | 50.0% | |
| GTGGCGTTGTGCAAGATGTT+AGG | + | chr5.3:19062910-19062929 | MS.gene036304:CDS | 50.0% | |
| GTTGATTGGAAGCCAAGGGT+TGG | + | chr5.3:19061223-19061242 | MS.gene036304:CDS | 50.0% | |
| TTTCAACCACTACCGGGGTT+CGG | + | chr5.3:19061965-19061984 | MS.gene036304:intron | 50.0% | |
| ! | TCTCTGGAGATAGCAGCTCA+TGG | - | chr5.3:19061528-19061547 | None:intergenic | 50.0% |
| ! | TCTGGTTTCAACCACTACCG+GGG | + | chr5.3:19061960-19061979 | MS.gene036304:intron | 50.0% |
| ! | TGAGGCATCACCTTGTGAAG+AGG | + | chr5.3:19063016-19063035 | MS.gene036304:CDS | 50.0% |
| !! | TACCGGGGTTCGGTCATTTT+TGG | + | chr5.3:19061975-19061994 | MS.gene036304:intron | 50.0% |
| !! | TATGCTGCACGTACTGGCTT+TGG | + | chr5.3:19061292-19061311 | MS.gene036304:CDS | 50.0% |
| AAATGACCGAACCCCGGTAG+TGG | - | chr5.3:19061974-19061993 | None:intergenic | 55.0% | |
| AGTATGGTGTACGGCGAAGC+TGG | + | chr5.3:19061736-19061755 | MS.gene036304:CDS | 55.0% | |
| CACCGATCAAGATCCGGCAA+TGG | + | chr5.3:19062094-19062113 | MS.gene036304:intron | 55.0% | |
| GGCCATTGCCGGATCTTGAT+CGG | - | chr5.3:19062099-19062118 | None:intergenic | 55.0% | |
| TCAAGATCCGGCAATGGCCA+AGG | + | chr5.3:19062100-19062119 | MS.gene036304:intron | 55.0% | |
| TGGACAAGAGATGCCCGAAG+TGG | + | chr5.3:19062891-19062910 | MS.gene036304:CDS | 55.0% | |
| GCAAGTGCCTTGGCCATTGC+CGG | - | chr5.3:19062110-19062129 | None:intergenic | 60.0% | |
| GTGATGCCCGAGACTCACCA+TGG | + | chr5.3:19062134-19062153 | MS.gene036304:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 19061208 | 19063271 | 19061208 | ID=MS.gene036304 |
| chr5.3 | mRNA | 19061208 | 19063271 | 19061208 | ID=MS.gene036304.t1;Parent=MS.gene036304 |
| chr5.3 | exon | 19061208 | 19061760 | 19061208 | ID=MS.gene036304.t1.exon1;Parent=MS.gene036304.t1 |
| chr5.3 | CDS | 19061208 | 19061760 | 19061208 | ID=cds.MS.gene036304.t1;Parent=MS.gene036304.t1 |
| chr5.3 | exon | 19062273 | 19062567 | 19062273 | ID=MS.gene036304.t1.exon2;Parent=MS.gene036304.t1 |
| chr5.3 | CDS | 19062273 | 19062567 | 19062273 | ID=cds.MS.gene036304.t1;Parent=MS.gene036304.t1 |
| chr5.3 | exon | 19062788 | 19063271 | 19062788 | ID=MS.gene036304.t1.exon3;Parent=MS.gene036304.t1 |
| chr5.3 | CDS | 19062788 | 19063271 | 19062788 | ID=cds.MS.gene036304.t1;Parent=MS.gene036304.t1 |
| Gene Sequence |
| Protein sequence |
