Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036397.t1 | XP_013464062.1 | 97.6 | 372 | 2 | 2 | 1 | 370 | 1 | 367 | 3.40E-199 | 704.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036397.t1 | O04136 | 84.0 | 262 | 41 | 1 | 97 | 357 | 165 | 426 | 4.4e-123 | 442.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036397.t1 | A0A072V8D4 | 97.6 | 372 | 2 | 2 | 1 | 370 | 1 | 367 | 2.4e-199 | 704.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene036397.t1 | TF | HB-KNOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036397.t1 | MTR_2g461240 | 97.581 | 372 | 2 | 2 | 1 | 370 | 1 | 367 | 0.0 | 747 |
| MS.gene036397.t1 | MTR_4g116545 | 72.386 | 373 | 68 | 8 | 1 | 370 | 1 | 341 | 0.0 | 505 |
| MS.gene036397.t1 | MTR_4g116545 | 73.889 | 360 | 61 | 7 | 1 | 357 | 1 | 330 | 1.32e-180 | 504 |
| MS.gene036397.t1 | MTR_1g012960 | 81.413 | 269 | 46 | 2 | 95 | 359 | 169 | 437 | 1.08e-164 | 468 |
| MS.gene036397.t1 | MTR_3g106400 | 66.860 | 344 | 84 | 7 | 42 | 357 | 29 | 370 | 1.56e-157 | 447 |
| MS.gene036397.t1 | MTR_3g106400 | 66.667 | 345 | 83 | 7 | 42 | 357 | 29 | 370 | 1.89e-157 | 447 |
| MS.gene036397.t1 | MTR_3g106400 | 66.667 | 345 | 83 | 7 | 42 | 357 | 29 | 370 | 6.97e-157 | 447 |
| MS.gene036397.t1 | MTR_5g011070 | 67.669 | 266 | 80 | 2 | 98 | 357 | 26 | 291 | 3.02e-127 | 368 |
| MS.gene036397.t1 | MTR_1g017080 | 33.333 | 243 | 142 | 5 | 100 | 342 | 120 | 342 | 4.55e-29 | 116 |
| MS.gene036397.t1 | MTR_1g084060 | 34.146 | 246 | 139 | 6 | 100 | 342 | 20 | 245 | 8.68e-29 | 113 |
| MS.gene036397.t1 | MTR_2g024390 | 31.020 | 245 | 142 | 6 | 100 | 342 | 118 | 337 | 1.19e-28 | 115 |
| MS.gene036397.t1 | MTR_1g084060 | 34.146 | 246 | 139 | 6 | 100 | 342 | 20 | 245 | 1.31e-28 | 113 |
| MS.gene036397.t1 | MTR_5g033720 | 34.553 | 246 | 134 | 5 | 100 | 342 | 73 | 294 | 1.87e-28 | 113 |
| MS.gene036397.t1 | MTR_5g085860 | 31.174 | 247 | 130 | 4 | 103 | 342 | 50 | 263 | 2.06e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036397.t1 | AT5G25220 | 59.217 | 434 | 108 | 9 | 1 | 369 | 1 | 430 | 1.11e-165 | 470 |
| MS.gene036397.t1 | AT5G11060 | 82.909 | 275 | 39 | 4 | 97 | 367 | 121 | 391 | 2.88e-165 | 468 |
| MS.gene036397.t1 | AT5G25220 | 84.906 | 265 | 33 | 3 | 97 | 357 | 157 | 418 | 6.42e-164 | 465 |
| MS.gene036397.t1 | AT4G32040 | 74.906 | 267 | 63 | 4 | 97 | 360 | 116 | 381 | 1.14e-142 | 410 |
| MS.gene036397.t1 | AT4G32040 | 77.419 | 248 | 53 | 3 | 97 | 342 | 116 | 362 | 8.51e-142 | 407 |
| MS.gene036397.t1 | AT1G62990 | 66.791 | 268 | 86 | 3 | 93 | 357 | 23 | 290 | 1.69e-127 | 368 |
| MS.gene036397.t1 | AT1G70510 | 33.730 | 252 | 144 | 6 | 91 | 342 | 61 | 289 | 7.45e-31 | 119 |
| MS.gene036397.t1 | AT4G08150 | 33.466 | 251 | 134 | 6 | 100 | 342 | 135 | 360 | 3.60e-30 | 119 |
| MS.gene036397.t1 | AT1G23380 | 34.909 | 275 | 136 | 10 | 96 | 361 | 82 | 322 | 4.07e-30 | 118 |
| MS.gene036397.t1 | AT1G70510 | 32.540 | 252 | 151 | 5 | 91 | 342 | 61 | 293 | 1.16e-29 | 116 |
| MS.gene036397.t1 | AT1G23380 | 34.657 | 277 | 136 | 11 | 96 | 361 | 82 | 324 | 3.35e-28 | 113 |
| MS.gene036397.t1 | AT1G62360 | 32.530 | 249 | 135 | 8 | 100 | 342 | 122 | 343 | 2.82e-23 | 100 |
Find 95 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCTCTTCCGTTTGGTTT+TGG | 0.226014 | 2.4:+38362814 | None:intergenic |
| TGAAAGTGAAAGATCTTTAA+TGG | 0.234617 | 2.4:-38366085 | MS.gene036397:CDS |
| ATTCTGCTGCCGTAGGTTTA+CGG | 0.307392 | 2.4:+38369818 | None:intergenic |
| TTAATTGAAGTCCTGTTTCC+TGG | 0.314760 | 2.4:+38362909 | None:intergenic |
| AATTAAAGCAAATAAATAAC+TGG | 0.337783 | 2.4:-38362892 | MS.gene036397:CDS |
| TGATGATTCTGTGTTGCTTT+CGG | 0.340218 | 2.4:+38369710 | None:intergenic |
| GGTTCATTAATCAAAGAAAA+AGG | 0.346232 | 2.4:-38362871 | MS.gene036397:CDS |
| TCATGCCATGGAAGCTGTTA+TGG | 0.355360 | 2.4:-38366386 | MS.gene036397:CDS |
| CGCTGATCCGGCACCGGCTC+CGG | 0.366320 | 2.4:+38369860 | None:intergenic |
| GCTAGGTTGGTCCAGGAAAC+AGG | 0.387799 | 2.4:-38362920 | MS.gene036397:CDS |
| TTTCGGCCCGGTTCCGATCC+CGG | 0.391273 | 2.4:+38369727 | None:intergenic |
| GTGCCGGATCAGCGCCGAAT+TGG | 0.392791 | 2.4:-38369851 | MS.gene036397:CDS |
| TTCGGCCCGGTTCCGATCCC+GGG | 0.394283 | 2.4:+38369728 | None:intergenic |
| AGAAAACCCGGGATCGGAAC+CGG | 0.397626 | 2.4:-38369734 | MS.gene036397:CDS |
| TTATATGAAGGAAGCCTTGA+TGG | 0.403625 | 2.4:-38366144 | MS.gene036397:CDS |
| GGAAGCTGTTATGGCTTGTT+GGG | 0.411048 | 2.4:-38366377 | MS.gene036397:CDS |
| TGGAAGCTGTTATGGCTTGT+TGG | 0.413199 | 2.4:-38366378 | MS.gene036397:CDS |
| TTAAAACTTACAGTTGGATA+AGG | 0.418650 | 2.4:+38364625 | None:intergenic |
| GAGCCAATTCGGCGCTGATC+CGG | 0.419648 | 2.4:+38369848 | None:intergenic |
| AAAGGAGCTTGATCAATTCA+TGG | 0.424580 | 2.4:-38369499 | MS.gene036397:intron |
| TAAAACTCACCTCTTCCGTT+TGG | 0.425758 | 2.4:+38362808 | None:intergenic |
| GTTGAAGCACGAGCTTAAAC+AGG | 0.438830 | 2.4:-38366046 | MS.gene036397:intron |
| GGTGGCAATCACACTCGAAA+TGG | 0.440017 | 2.4:-38364648 | MS.gene036397:CDS |
| CCGGCACCGGCTCCGGTGAA+TGG | 0.444652 | 2.4:+38369867 | None:intergenic |
| ATTGCCACCAAGCTTTCAAA+AGG | 0.450033 | 2.4:+38364662 | None:intergenic |
| CAATACAAAGCAGACATACT+TGG | 0.452763 | 2.4:-38369675 | MS.gene036397:CDS |
| AAGTACTCTTCACTTGCTAA+TGG | 0.452773 | 2.4:-38369534 | MS.gene036397:CDS |
| AAAAGGGAGGTTGTGTCACC+GGG | 0.455869 | 2.4:+38364679 | None:intergenic |
| TGTTATGGCTTGTTGGGAGC+TGG | 0.458320 | 2.4:-38366371 | MS.gene036397:CDS |
| CAAAAGGGAGGTTGTGTCAC+CGG | 0.459004 | 2.4:+38364678 | None:intergenic |
| ACGGCGTTGTTGAGCCAATT+CGG | 0.459617 | 2.4:+38369837 | None:intergenic |
| AACTGTTGCTCTTCATTGAA+AGG | 0.470953 | 2.4:+38369921 | None:intergenic |
| GTTCTTTAAAAGCACAGAGC+AGG | 0.490015 | 2.4:+38366431 | None:intergenic |
| TTCACTTGCTAATGGTGTTG+TGG | 0.493741 | 2.4:-38369526 | MS.gene036397:CDS |
| TTTAATGGAACGTGTGAGGC+AGG | 0.496599 | 2.4:-38366070 | MS.gene036397:CDS |
| GTATCTCCTGGTGAAGGGAG+TGG | 0.497119 | 2.4:-38366216 | MS.gene036397:CDS |
| GGAAGAAGACAAAGCTAGGT+TGG | 0.501618 | 2.4:-38362933 | MS.gene036397:CDS |
| TTTAGGAAGAAGACAAAGCT+AGG | 0.501787 | 2.4:-38362937 | MS.gene036397:intron |
| ATTCGGCGCTGATCCGGCAC+CGG | 0.502759 | 2.4:+38369854 | None:intergenic |
| GAAAACCCGGGATCGGAACC+GGG | 0.504035 | 2.4:-38369733 | MS.gene036397:CDS |
| TCACAAAACGAGGACGTAAG+AGG | 0.506259 | 2.4:-38369771 | MS.gene036397:CDS |
| AGTTTGCATTGCTCTCTGCT+TGG | 0.514653 | 2.4:+38366166 | None:intergenic |
| ATTCTACGGAAGAGAAGAGC+AGG | 0.516568 | 2.4:-38364709 | MS.gene036397:CDS |
| CTATTCAATAGTAGTGGCGC+AGG | 0.525611 | 2.4:-38362691 | MS.gene036397:intron |
| CTACTACCATTCACCGGAGC+CGG | 0.525885 | 2.4:-38369873 | MS.gene036397:CDS |
| AGCAATGCAAACTTATATGA+AGG | 0.526547 | 2.4:-38366156 | MS.gene036397:CDS |
| AAAGATCTTTCACTTTCAGT+AGG | 0.529421 | 2.4:+38366090 | None:intergenic |
| GGTGGTGATAGTCTCAGCTT+TGG | 0.534812 | 2.4:-38366123 | MS.gene036397:CDS |
| ATCCGCGGAAGCTGATCGAC+GGG | 0.535334 | 2.4:+38369594 | None:intergenic |
| AGACAAAGCTAGGTTGGTCC+AGG | 0.536981 | 2.4:-38362927 | MS.gene036397:CDS |
| CCATTCACCGGAGCCGGTGC+CGG | 0.539777 | 2.4:-38369867 | MS.gene036397:CDS |
| CAGTCTCTACAAAGCTTGAC+CGG | 0.543218 | 2.4:-38366346 | MS.gene036397:intron |
| GTTGCTCCACTCCCTTCACC+AGG | 0.545323 | 2.4:+38366210 | None:intergenic |
| GTGATGTATCTGGTTGTAAG+TGG | 0.546109 | 2.4:+38369790 | None:intergenic |
| ACAAGCCATAACAGCTTCCA+TGG | 0.548095 | 2.4:+38366381 | None:intergenic |
| GATAGAAGCTGATCGTAAAG+AGG | 0.552473 | 2.4:+38369648 | None:intergenic |
| GATCCGCGGAAGCTGATCGA+CGG | 0.553108 | 2.4:+38369593 | None:intergenic |
| CCACTGGCTCCAAAACCAAA+CGG | 0.555258 | 2.4:-38362823 | MS.gene036397:CDS |
| CGTAAGAGGTATGAACATGA+TGG | 0.558929 | 2.4:-38369757 | MS.gene036397:CDS |
| ATTCTGTGTTGCTTTCGGCC+CGG | 0.559067 | 2.4:+38369715 | None:intergenic |
| TCACTTTCAGTAGGAACAAG+AGG | 0.559140 | 2.4:+38366099 | None:intergenic |
| TGAAGCTGTGCGTCGATCCG+CGG | 0.565484 | 2.4:+38369579 | None:intergenic |
| TGCCGAATCACATGAAACTC+TGG | 0.568006 | 2.4:+38362656 | None:intergenic |
| CCACCAAGCTTTCAAAAGGG+AGG | 0.569465 | 2.4:+38364666 | None:intergenic |
| AGAAGAGCAGGAAAGCTCCC+CGG | 0.570400 | 2.4:-38364697 | MS.gene036397:CDS |
| TAATGGTGTTGTGGATGAAA+AGG | 0.570805 | 2.4:-38369517 | MS.gene036397:CDS |
| ACAGGTGTATCTCCTGGTGA+AGG | 0.571753 | 2.4:-38366222 | MS.gene036397:intron |
| CGCCCGTCGATCAGCTTCCG+CGG | 0.571878 | 2.4:-38369596 | MS.gene036397:CDS |
| ACTAATCCTTCGTCTTCCAC+TGG | 0.572883 | 2.4:-38362839 | MS.gene036397:CDS |
| GCTCCAAAACCAAACGGAAG+AGG | 0.573313 | 2.4:-38362817 | MS.gene036397:intron |
| TGAACATGATGGAGAAAACC+CGG | 0.573901 | 2.4:-38369746 | MS.gene036397:CDS |
| GCTTCAGCAGTCGCAGCGCG+TGG | 0.581446 | 2.4:-38369562 | MS.gene036397:CDS |
| AATTGATTTCATGAGAGAGA+TGG | 0.582629 | 2.4:+38369949 | None:intergenic |
| ACATGTCCGTGTTCATGCCA+TGG | 0.585181 | 2.4:-38366398 | MS.gene036397:CDS |
| TGATGGAGAAAACCCGGGAT+CGG | 0.585256 | 2.4:-38369740 | MS.gene036397:CDS |
| GGGTTACAAGAGTAAGATTG+TGG | 0.594567 | 2.4:-38364746 | MS.gene036397:CDS |
| GGAGAAAATTCTGCTGCCGT+AGG | 0.594774 | 2.4:+38369811 | None:intergenic |
| ACATAAGAGAAGAAATTCTA+CGG | 0.596585 | 2.4:-38364723 | MS.gene036397:CDS |
| TGAGACTATCACCACCATCA+AGG | 0.601612 | 2.4:+38366130 | None:intergenic |
| GCATGAACAGGTGTATCTCC+TGG | 0.604904 | 2.4:-38366228 | MS.gene036397:intron |
| CAGGTGTATCTCCTGGTGAA+GGG | 0.604940 | 2.4:-38366221 | MS.gene036397:CDS |
| TCAGCAGTCGCAGCGCGTGG+TGG | 0.605137 | 2.4:-38369559 | MS.gene036397:CDS |
| TCAACAACGCCGTAAACCTA+CGG | 0.609759 | 2.4:-38369827 | MS.gene036397:CDS |
| TTGCCACCAAGCTTTCAAAA+GGG | 0.611238 | 2.4:+38364663 | None:intergenic |
| CAAAGACTACTACCATTCAC+CGG | 0.619446 | 2.4:-38369879 | MS.gene036397:CDS |
| CAGCTTCCATGGCATGAACA+CGG | 0.631221 | 2.4:+38366392 | None:intergenic |
| ATAGAAGCTGATCGTAAAGA+GGG | 0.632926 | 2.4:+38369649 | None:intergenic |
| GATCTTTAATGGAACGTGTG+AGG | 0.637290 | 2.4:-38366074 | MS.gene036397:CDS |
| TTGGAGCCAGTGGAAGACGA+AGG | 0.640820 | 2.4:+38362833 | None:intergenic |
| AGGGAGTGGAGCAACAATGT+CGG | 0.655814 | 2.4:-38366202 | MS.gene036397:CDS |
| ACCAGATACATCACAAAACG+AGG | 0.688090 | 2.4:-38369781 | MS.gene036397:CDS |
| AAGCAACACAGAATCATCAG+AGG | 0.697069 | 2.4:-38369706 | MS.gene036397:CDS |
| GAACATGATGGAGAAAACCC+GGG | 0.707928 | 2.4:-38369745 | MS.gene036397:CDS |
| TATGAAGGAAGCCTTGATGG+TGG | 0.736950 | 2.4:-38366141 | MS.gene036397:CDS |
| AAAGGGAGGTTGTGTCACCG+GGG | 0.760034 | 2.4:+38364680 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 38362663 | 38369988 | 38362663 | ID=MS.gene036397 |
| chr2.4 | mRNA | 38362663 | 38369988 | 38362663 | ID=MS.gene036397.t1;Parent=MS.gene036397 |
| chr2.4 | exon | 38369500 | 38369988 | 38369500 | ID=MS.gene036397.t1.exon1;Parent=MS.gene036397.t1 |
| chr2.4 | CDS | 38369500 | 38369988 | 38369500 | ID=cds.MS.gene036397.t1;Parent=MS.gene036397.t1 |
| chr2.4 | exon | 38366347 | 38366467 | 38366347 | ID=MS.gene036397.t1.exon2;Parent=MS.gene036397.t1 |
| chr2.4 | CDS | 38366347 | 38366467 | 38366347 | ID=cds.MS.gene036397.t1;Parent=MS.gene036397.t1 |
| chr2.4 | exon | 38366047 | 38366240 | 38366047 | ID=MS.gene036397.t1.exon3;Parent=MS.gene036397.t1 |
| chr2.4 | CDS | 38366047 | 38366240 | 38366047 | ID=cds.MS.gene036397.t1;Parent=MS.gene036397.t1 |
| chr2.4 | exon | 38364636 | 38364767 | 38364636 | ID=MS.gene036397.t1.exon4;Parent=MS.gene036397.t1 |
| chr2.4 | CDS | 38364636 | 38364767 | 38364636 | ID=cds.MS.gene036397.t1;Parent=MS.gene036397.t1 |
| chr2.4 | exon | 38362818 | 38362954 | 38362818 | ID=MS.gene036397.t1.exon5;Parent=MS.gene036397.t1 |
| chr2.4 | CDS | 38362818 | 38362954 | 38362818 | ID=cds.MS.gene036397.t1;Parent=MS.gene036397.t1 |
| chr2.4 | exon | 38362663 | 38362702 | 38362663 | ID=MS.gene036397.t1.exon6;Parent=MS.gene036397.t1 |
| chr2.4 | CDS | 38362663 | 38362702 | 38362663 | ID=cds.MS.gene036397.t1;Parent=MS.gene036397.t1 |
| Gene Sequence |
| Protein sequence |