AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036428

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036428.t1 MTR_1g080340 80.484 620 43 5 3 622 2 543 0.0 987
MS.gene036428.t1 MTR_8g106570 87.162 296 18 2 259 553 29 305 0.0 516
MS.gene036428.t1 MTR_1g069570 58.478 289 115 5 336 622 418 703 9.67e-115 360
MS.gene036428.t1 MTR_7g098390 55.789 285 123 2 338 622 378 659 3.21e-111 350
MS.gene036428.t1 MTR_1g069570 58.935 263 103 5 336 596 418 677 5.21e-101 322
MS.gene036428.t1 MTR_1g064770 93.056 72 5 0 470 541 21 92 4.73e-44 152
MS.gene036428.t1 MTR_5g018850 40.000 145 83 4 479 622 1327 1468 5.73e-22 101
MS.gene036428.t1 MTR_7g088370 26.923 286 145 10 346 620 434 666 7.37e-22 100
MS.gene036428.t1 MTR_3g011440 25.763 295 150 9 346 622 374 617 7.42e-22 100
MS.gene036428.t1 MTR_8g042750 24.915 293 152 8 346 622 401 641 1.19e-21 100
MS.gene036428.t1 MTR_4g132610 41.912 136 75 4 479 613 867 999 3.15e-21 99.4
MS.gene036428.t1 MTR_8g078490 40.000 145 83 4 479 622 1073 1214 3.40e-21 99.4
MS.gene036428.t1 MTR_8g078505 38.621 145 83 4 479 622 361 500 5.37e-21 97.4
MS.gene036428.t1 MTR_5g013420 27.759 299 130 11 346 622 809 1043 3.29e-20 95.9
MS.gene036428.t1 MTR_5g013420 27.759 299 130 11 346 622 809 1043 3.32e-20 95.9
MS.gene036428.t1 MTR_4g010830 26.370 292 143 10 346 622 700 934 5.87e-18 88.6
MS.gene036428.t1 MTR_7g052480 28.044 271 122 11 347 597 269 486 1.46e-15 80.5
MS.gene036428.t1 MTR_0376s0030 25.758 264 128 9 348 595 308 519 2.57e-15 79.7
MS.gene036428.t1 MTR_8g070070 27.083 240 106 9 338 568 497 676 4.90e-15 79.3
MS.gene036428.t1 MTR_4g010550 31.293 147 94 2 476 622 279 418 5.97e-15 78.2
MS.gene036428.t1 MTR_6g027690 37.008 127 71 2 481 602 241 363 1.02e-14 77.0
MS.gene036428.t1 MTR_1g035400 33.333 159 85 6 454 595 368 522 4.21e-14 75.9
MS.gene036428.t1 MTR_1g048950 28.627 255 113 10 346 597 280 468 4.34e-14 75.9
MS.gene036428.t1 MTR_1g035420 27.376 263 121 11 348 595 396 603 1.54e-13 74.3
MS.gene036428.t1 MTR_8g070075 26.126 222 108 7 348 568 500 666 3.74e-13 73.2
MS.gene036428.t1 MTR_7g450730 38.060 134 66 8 486 606 322 451 4.18e-13 72.4
MS.gene036428.t1 MTR_1g098370 36.752 117 50 4 487 597 81 179 1.60e-12 70.5
MS.gene036428.t1 MTR_1g098000 36.752 117 50 4 487 597 78 176 1.63e-12 70.5
MS.gene036428.t1 MTR_7g445600 33.051 118 51 3 505 622 251 340 2.16e-11 66.2
MS.gene036428.t1 MTR_7g445530 35.211 142 60 8 486 597 334 473 4.09e-11 66.2
MS.gene036428.t1 MTR_7g445710 35.211 142 60 8 486 597 334 473 5.01e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036428.t1 AT3G04380 66.084 286 95 2 338 622 119 403 1.60e-141 420
MS.gene036428.t1 AT3G04380 66.084 286 95 2 338 622 135 419 1.85e-141 421
MS.gene036428.t1 AT3G04380 66.084 286 95 2 338 622 108 392 2.20e-141 419
MS.gene036428.t1 AT3G04380 66.084 286 95 2 338 622 108 392 2.56e-141 419
MS.gene036428.t1 AT3G04380 66.084 286 95 2 338 622 135 419 2.82e-141 420
MS.gene036428.t1 AT3G04380 66.084 286 95 2 338 622 92 376 3.73e-141 418
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 293 574 1.30e-101 322
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 313 594 1.61e-101 322
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 313 594 1.61e-101 322
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 313 594 1.61e-101 322
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 313 594 1.61e-101 322
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 362 643 5.24e-101 322
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 9 116 2.05e-14 77.0
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 362 643 5.24e-101 322
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 9 116 2.05e-14 77.0
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 362 643 5.24e-101 322
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 9 116 2.05e-14 77.0
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 362 643 5.24e-101 322
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 9 116 2.05e-14 77.0
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 385 666 7.70e-101 323
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 32 139 1.91e-14 77.4
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 385 666 7.70e-101 323
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 32 139 1.91e-14 77.4
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 382 663 8.40e-101 322
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 9 116 2.19e-14 77.0
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 382 663 8.40e-101 322
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 9 116 2.19e-14 77.0
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 382 663 8.40e-101 322
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 9 116 2.19e-14 77.0
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 382 663 8.40e-101 322
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 9 116 2.19e-14 77.0
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 405 686 1.02e-100 323
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 32 139 2.09e-14 77.0
MS.gene036428.t1 AT5G43990 54.167 288 126 2 335 622 405 686 1.02e-100 323
MS.gene036428.t1 AT5G43990 41.593 113 58 2 10 119 32 139 2.09e-14 77.0
MS.gene036428.t1 AT1G04050 50.865 289 137 2 335 622 292 576 7.95e-94 302
MS.gene036428.t1 AT1G04050 50.865 289 137 2 335 622 396 680 3.49e-93 303
MS.gene036428.t1 AT1G04050 50.865 289 137 2 335 622 396 680 3.49e-93 303
MS.gene036428.t1 AT2G23740 41.379 145 79 5 480 622 1193 1333 1.00e-22 104
MS.gene036428.t1 AT2G23740 41.379 145 79 5 480 622 1200 1340 1.04e-22 103
MS.gene036428.t1 AT2G23740 41.379 145 79 5 480 622 1200 1340 1.04e-22 103
MS.gene036428.t1 AT2G23740 41.379 145 79 5 480 622 1200 1340 1.04e-22 103
MS.gene036428.t1 AT5G04940 25.939 293 146 8 346 622 386 623 4.11e-21 98.2
MS.gene036428.t1 AT5G04940 25.939 293 146 8 346 622 386 623 4.11e-21 98.2
MS.gene036428.t1 AT2G23740 45.378 119 60 4 480 596 1200 1315 7.34e-21 98.2
MS.gene036428.t1 AT2G23740 45.378 119 60 4 480 596 1200 1315 7.34e-21 98.2
MS.gene036428.t1 AT2G35160 28.800 250 110 9 348 597 507 688 1.42e-19 93.6
MS.gene036428.t1 AT2G35160 28.800 250 110 9 348 597 543 724 1.49e-19 93.6
MS.gene036428.t1 AT2G35160 28.800 250 110 9 348 597 543 724 1.49e-19 93.6
MS.gene036428.t1 AT2G35160 28.800 250 110 9 348 597 543 724 1.49e-19 93.6
MS.gene036428.t1 AT2G35160 28.800 250 110 9 348 597 543 724 1.49e-19 93.6
MS.gene036428.t1 AT1G73100 26.644 289 150 9 346 622 384 622 4.00e-19 92.0
MS.gene036428.t1 AT2G22740 28.247 308 143 12 337 622 493 744 1.64e-18 90.5
MS.gene036428.t1 AT2G22740 28.247 308 143 12 337 622 493 744 1.64e-18 90.5
MS.gene036428.t1 AT4G13460 27.206 272 127 10 348 603 386 602 9.94e-16 81.3
MS.gene036428.t1 AT4G13460 27.206 272 127 10 348 603 386 602 9.94e-16 81.3
MS.gene036428.t1 AT5G13960 36.364 143 72 5 473 597 413 554 2.87e-14 76.6
MS.gene036428.t1 AT5G13960 36.364 143 72 5 473 597 279 420 3.40e-14 75.9
MS.gene036428.t1 AT2G33290 27.027 222 105 8 348 567 388 554 1.03e-13 74.7
MS.gene036428.t1 AT2G33290 27.027 222 105 8 348 567 388 554 1.03e-13 74.7
MS.gene036428.t1 AT2G33290 27.027 222 105 8 348 567 388 554 1.03e-13 74.7
MS.gene036428.t1 AT2G33290 27.027 222 105 8 348 567 388 554 1.03e-13 74.7
MS.gene036428.t1 AT1G17770 24.068 295 143 15 338 610 397 632 6.47e-13 72.4
MS.gene036428.t1 AT1G76710 32.143 112 62 3 487 597 72 170 4.92e-11 65.9
MS.gene036428.t1 AT1G76710 32.143 112 62 3 487 597 72 170 4.92e-11 65.9
MS.gene036428.t1 AT1G76710 32.143 112 62 3 487 597 72 170 5.11e-11 65.9
MS.gene036428.t1 AT1G76710 32.143 112 62 3 487 597 72 170 5.52e-11 65.9

Find 157 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGGAATGTAATTAAATTT+TGG 0.115496 1.4:+65299095 None:intergenic
ACTATTATCATGTGAGAATT+TGG 0.222707 1.4:-65297191 MS.gene036428:CDS
CTAAGTCCTTCATAGCATTA+AGG 0.248100 1.4:+65301204 None:intergenic
TAAATTGTGATGCTGCATTA+AGG 0.275228 1.4:-65299262 MS.gene036428:CDS
AATATCAATATTACCCTTAC+AGG 0.275906 1.4:+65299322 None:intergenic
TCATTCTTAGTCCTCTCAAT+TGG 0.283626 1.4:+65298831 None:intergenic
AATAGTTTACCTGCAATTTA+CGG 0.292002 1.4:+65298694 None:intergenic
GGGTTCGGAAGTGGGATTAA+AGG 0.294538 1.4:-65298036 MS.gene036428:CDS
TGCTTGGATGCAACACATAA+TGG 0.299187 1.4:-65297999 MS.gene036428:CDS
TGTAAGGGTAATATTGATAT+TGG 0.302485 1.4:-65299320 MS.gene036428:CDS
TCTCCATCATGACAACTTAC+TGG 0.309078 1.4:+65300797 None:intergenic
AGATGTCCCTTGCATGATTC+AGG 0.322166 1.4:+65298801 None:intergenic
ATAGATAGAAAGATCTATTC+CGG 0.325877 1.4:-65300581 MS.gene036428:CDS
TTATTGAAGCTGACAATTAT+CGG 0.327635 1.4:-65301112 MS.gene036428:CDS
AGGTTTAAGCCGTAAATTGC+AGG 0.364369 1.4:-65298703 MS.gene036428:intron
TCCCTTGCATGATTCAGGTT+TGG 0.366414 1.4:+65298806 None:intergenic
TCTGGTTAGGAAGTTTATAA+AGG 0.366891 1.4:-65298781 MS.gene036428:CDS
CTTTGATACATTGTGTTACA+TGG 0.369163 1.4:+65299077 None:intergenic
CAGTCTGCATCAAGTGTTAC+AGG 0.375742 1.4:+65298059 None:intergenic
TATTGGTTCTTCTTCACCCT+TGG 0.376191 1.4:-65299303 MS.gene036428:CDS
GATCAGAAGATTAAAGTATC+AGG 0.378923 1.4:-65299905 MS.gene036428:CDS
GATCAGAAGATTAAAGTATC+AGG 0.378923 1.4:-65300476 MS.gene036428:CDS
GATTGCTGCTCCGATTGTTC+AGG 0.382082 1.4:-65299014 MS.gene036428:CDS
CCTGTCATATAATTCTGAAT+TGG 0.382980 1.4:+65298118 None:intergenic
TAAGTCCTTCATAGCATTAA+GGG 0.383476 1.4:+65301205 None:intergenic
AGTTTCCTGTTTAAAAGTCT+TGG 0.385683 1.4:+65300673 None:intergenic
GGCTTGAATTTAAATCGAAA+TGG 0.393994 1.4:-65299236 MS.gene036428:CDS
ATTGGTTCTTCTTCACCCTT+GGG 0.396671 1.4:-65299302 MS.gene036428:CDS
CATTCTTAGTCCTCTCAATT+GGG 0.399084 1.4:+65298832 None:intergenic
CTTTGAGTCAAAGGAAGATA+AGG 0.400162 1.4:-65301045 MS.gene036428:intron
TGAAACCCTCTCAAATTTCC+AGG 0.401603 1.4:-65300649 MS.gene036428:CDS
ACCAAGTGAAGTTTCTGTTT+AGG 0.402308 1.4:+65300770 None:intergenic
AATATTACCCTTACAGGTTC+TGG 0.402438 1.4:+65299328 None:intergenic
GACTCAAGAAGGAAAGGGCT+GGG 0.404908 1.4:-65298207 MS.gene036428:CDS
ACTTGCTCGGATTGCGGATG+AGG 0.407887 1.4:-65299036 MS.gene036428:CDS
AACCAGTTCGCAGGCATTCA+TGG 0.414985 1.4:-65300609 MS.gene036428:CDS
GTTTCCTGTTTAAAAGTCTT+GGG 0.416453 1.4:+65300674 None:intergenic
TCAGGTGTCTCCACTTCAAC+AGG 0.424005 1.4:+65297219 None:intergenic
GGAAGTTTATAAAGGAGTGC+TGG 0.425648 1.4:-65298773 MS.gene036428:CDS
TGAATCATGCAAGGGACATC+TGG 0.436215 1.4:-65298799 MS.gene036428:CDS
TACTAATCCAAGGGCAATCA+AGG 0.437821 1.4:-65301228 MS.gene036428:CDS
CTGTAACACTTGATGCAGAC+TGG 0.438878 1.4:-65298058 MS.gene036428:CDS
GCTTGGATGCAACACATAAT+GGG 0.439200 1.4:-65297998 MS.gene036428:CDS
TAATAACACCAGAACCTGTA+AGG 0.441363 1.4:-65299336 MS.gene036428:CDS
GAATGCCTGCGAACTGGTTG+TGG 0.444610 1.4:+65300613 None:intergenic
TGTGCATGCTCTCAAGAAAC+TGG 0.447117 1.4:-65298966 MS.gene036428:CDS
GTGACATGCAGTGTGGAAAT+CGG 0.448940 1.4:-65298737 MS.gene036428:CDS
TTGCAAGATTCATCAATCAT+AGG 0.449185 1.4:-65297971 MS.gene036428:intron
TTAAGGGCCTTGATTGCCCT+TGG 0.450224 1.4:+65301221 None:intergenic
TAGATAGAAAGATCTATTCC+GGG 0.453017 1.4:-65300580 MS.gene036428:CDS
AAGACAGTCGCCTGAACAAT+CGG 0.460644 1.4:+65299004 None:intergenic
GCAACTTGTCGAAACAGATC+CGG 0.461669 1.4:+65299859 None:intergenic
GCAACTTGTCGAAACAGATC+CGG 0.461669 1.4:+65300430 None:intergenic
ATTTAAATCGAAATGGATCA+AGG 0.466304 1.4:-65299229 MS.gene036428:CDS
CAGGTGTTCTTGACTCAAGA+AGG 0.467731 1.4:-65298218 MS.gene036428:CDS
GGATGGCTAAGTCCATCAAT+TGG 0.470158 1.4:+65299956 None:intergenic
CATTGTAAAGATCCAATTGA+TGG 0.470887 1.4:-65299968 MS.gene036428:CDS
CATTGTAAAGATCCAATTGA+TGG 0.470887 1.4:-65300539 MS.gene036428:CDS
TCCTTTGTCTGTGAATATGC+AGG 0.471253 1.4:-65298152 MS.gene036428:CDS
CTTTGAGTCAAAGGAAGATA+AGG 0.471512 1.4:-65301072 MS.gene036428:CDS
AATACACATAATGATGATGC+TGG 0.471715 1.4:+65298865 None:intergenic
CAAGGCCCTTAATGCTATGA+AGG 0.475493 1.4:-65301210 MS.gene036428:CDS
TGCAGACTGGGGTTCGGAAG+TGG 0.479829 1.4:-65298045 MS.gene036428:CDS
GGATGGCTAGGTCCATCAAT+TGG 0.481202 1.4:+65300527 None:intergenic
ATGTCAATATTTCACTTGCT+CGG 0.482161 1.4:-65299049 MS.gene036428:CDS
ATATGTATGTCTATCATTGC+CGG 0.482653 1.4:+65298082 None:intergenic
TTCACAGACAAAGGATCCCT+TGG 0.485409 1.4:+65298160 None:intergenic
CATGCAAGGGACATCTGGTT+AGG 0.486296 1.4:-65298794 MS.gene036428:CDS
TTTGACAGTAAGATTTCCAT+TGG 0.487180 1.4:+65299415 None:intergenic
ACAGATCCGGGATGAAACTT+AGG 0.488825 1.4:+65299872 None:intergenic
ACAGATCCGGGATGAAACTT+AGG 0.488825 1.4:+65300443 None:intergenic
TGACTCAAGAAGGAAAGGGC+TGG 0.490394 1.4:-65298208 MS.gene036428:CDS
TGTGGGATTCATATCTTGCC+TGG 0.492190 1.4:+65300631 None:intergenic
ATCCATGAATGCCTGCGAAC+TGG 0.494735 1.4:+65300607 None:intergenic
AGATTGCATGTCCATGGTAA+AGG 0.499567 1.4:-65298892 MS.gene036428:CDS
ACATGATAATAGTGGCGGTC+AGG 0.500724 1.4:+65297201 None:intergenic
AAATTCTCACATGATAATAG+TGG 0.504059 1.4:+65297193 None:intergenic
ACTTGATGCAGACTGGGGTT+CGG 0.504834 1.4:-65298051 MS.gene036428:CDS
GGATGAAGAGGCATTATGCT+TGG 0.505357 1.4:-65298015 MS.gene036428:CDS
AGATGCATACTTTGAGTCAA+AGG 0.508357 1.4:-65301081 MS.gene036428:CDS
CAACTTGTCGAAACAGATCC+GGG 0.509028 1.4:+65299860 None:intergenic
CAACTTGTCGAAACAGATCC+GGG 0.509028 1.4:+65300431 None:intergenic
CTTAATGCTATGAAGGACTT+AGG 0.511792 1.4:-65301203 MS.gene036428:CDS
TTTGACAGATTGCATGTCCA+TGG 0.511932 1.4:-65298898 MS.gene036428:CDS
CCAATTCAGAATTATATGAC+AGG 0.514306 1.4:-65298118 MS.gene036428:CDS
GGCTCACTAAATGCTTCCAA+TGG 0.514313 1.4:-65299431 MS.gene036428:CDS
TATGTTGAAGACATAACAAA+AGG 0.515772 1.4:-65299170 MS.gene036428:CDS
TGTAACACTTGATGCAGACT+GGG 0.519571 1.4:-65298057 MS.gene036428:CDS
TGACATGCAGTGTGGAAATC+GGG 0.519904 1.4:-65298736 MS.gene036428:CDS
TAAGGCATACTTTGAGTCAA+AGG 0.523841 1.4:-65301054 MS.gene036428:CDS
AATAGACATTCCTGTTGAAG+TGG 0.525349 1.4:-65297229 MS.gene036428:CDS
GCAGACTGGGGTTCGGAAGT+GGG 0.526732 1.4:-65298044 MS.gene036428:CDS
GACAGGATTGTGCATAGTAC+CGG 0.531414 1.4:-65298101 MS.gene036428:CDS
GATTGCCCTTGGATTAGTAG+TGG 0.531861 1.4:+65301232 None:intergenic
TCTGGTGTTATTATTGCATG+TGG 0.532171 1.4:+65299346 None:intergenic
CTTAGGAATCTCGGAGGTCG+AGG 0.532485 1.4:-65301186 MS.gene036428:CDS
TATTCTGATACACATCTGAC+AGG 0.533483 1.4:+65299390 None:intergenic
GTTCTTGACTCAAGAAGGAA+AGG 0.536862 1.4:-65298213 MS.gene036428:CDS
TCCGGGGCAGCATCATCTGC+AGG 0.539320 1.4:-65300563 MS.gene036428:CDS
AAGGAGTGCTGGAGGAAATG+TGG 0.543111 1.4:-65298762 MS.gene036428:CDS
AGAAGATTTAACTTCTCCCA+AGG 0.546782 1.4:+65299286 None:intergenic
GCTCCAGTAAGTTGTCATGA+TGG 0.552655 1.4:-65300800 MS.gene036428:CDS
GAATCCCACAACCAGTTCGC+AGG 0.552736 1.4:-65300618 MS.gene036428:CDS
ACCTGCAGATGATGCTGCCC+CGG 0.554140 1.4:+65300562 None:intergenic
TATTTCACTTGCTCGGATTG+CGG 0.555234 1.4:-65299042 MS.gene036428:CDS
TATGTCTTCAACATATCGAA+AGG 0.556421 1.4:+65299178 None:intergenic
TCACAGACAAAGGATCCCTT+GGG 0.563094 1.4:+65298161 None:intergenic
CTGGTGTTATTATTGCATGT+GGG 0.563538 1.4:+65299347 None:intergenic
TGTGATGCTGCATTAAGGAC+TGG 0.565305 1.4:-65299257 MS.gene036428:CDS
CTTGGTAGATATAGACAACC+AGG 0.566110 1.4:-65300753 MS.gene036428:CDS
ATCTTGCCTGGAAATTTGAG+AGG 0.568497 1.4:+65300643 None:intergenic
CTCTGAATAGAAGGATGGCT+AGG 0.569399 1.4:+65300515 None:intergenic
TATGAAGGACTTAGGAATCT+CGG 0.570150 1.4:-65301195 MS.gene036428:CDS
ACTCAAGAAGGAAAGGGCTG+GGG 0.575809 1.4:-65298206 MS.gene036428:CDS
TCATGACCACTACTAATCCA+AGG 0.576059 1.4:-65301238 MS.gene036428:CDS
GAAGATTTAACTTCTCCCAA+GGG 0.576136 1.4:+65299287 None:intergenic
CTCGGAGGTCGAGGTGACAC+CGG 0.577150 1.4:-65301177 MS.gene036428:CDS
CCTTTGTCTGTGAATATGCA+GGG 0.579512 1.4:-65298151 MS.gene036428:CDS
AATGCCTGCGAACTGGTTGT+GGG 0.580159 1.4:+65300614 None:intergenic
CCCTGCATATTCACAGACAA+AGG 0.583203 1.4:+65298151 None:intergenic
TTCTTGACTCAAGAAGGAAA+GGG 0.585578 1.4:-65298212 MS.gene036428:CDS
ATACACATAATGATGATGCT+GGG 0.585836 1.4:+65298866 None:intergenic
TTAGCCATCCTTCTATTCAG+AGG 0.586545 1.4:-65299943 MS.gene036428:CDS
ACCTAAACAGAAACTTCACT+TGG 0.589122 1.4:-65300771 MS.gene036428:CDS
GATAAACCTAAGTTTCATCC+CGG 0.594944 1.4:-65299878 MS.gene036428:CDS
GATAAACCTAAGTTTCATCC+CGG 0.594944 1.4:-65300449 MS.gene036428:CDS
ATGCTGGGGTTCCTTTACCA+TGG 0.596438 1.4:+65298881 None:intergenic
AACACTAGAAGATTTGCCCA+AGG 0.602862 1.4:-65298177 MS.gene036428:CDS
GTTTCTTGAGAGCATGCACA+AGG 0.604033 1.4:+65298969 None:intergenic
TCTTGCCTGGAAATTTGAGA+GGG 0.606453 1.4:+65300644 None:intergenic
TCCTGTTTAAAAGTCTTGGG+AGG 0.609380 1.4:+65300677 None:intergenic
GTAAAGAGTGCCCAATTGAG+AGG 0.609557 1.4:-65298842 MS.gene036428:CDS
CTAGCCATCCTTCTATTCAG+AGG 0.613137 1.4:-65300514 MS.gene036428:CDS
AATAACACCAGAACCTGTAA+GGG 0.613867 1.4:-65299335 MS.gene036428:CDS
GACCAAACCTGAATCATGCA+AGG 0.615446 1.4:-65298808 MS.gene036428:CDS
AGTGGGATTAAAGGATGAAG+AGG 0.621432 1.4:-65298027 MS.gene036428:CDS
GCATGCTCTCAAGAAACTGG+TGG 0.621903 1.4:-65298963 MS.gene036428:CDS
GTGTTTGCTTACACTTCACA+AGG 0.626768 1.4:-65298939 MS.gene036428:CDS
AGTTGTCAGCTGATAAAACC+TGG 0.627203 1.4:+65300735 None:intergenic
TTCTCACATGATAATAGTGG+CGG 0.628566 1.4:+65297196 None:intergenic
TACACATAATGATGATGCTG+GGG 0.630004 1.4:+65298867 None:intergenic
ACACTAGAAGATTTGCCCAA+GGG 0.632238 1.4:-65298176 MS.gene036428:CDS
CATGACCACTACTAATCCAA+GGG 0.633516 1.4:-65301237 MS.gene036428:CDS
AGTTTATAAAGGAGTGCTGG+AGG 0.635155 1.4:-65298770 MS.gene036428:CDS
ATCAAGGCAAACTCTTTCTG+AGG 0.636247 1.4:-65299213 MS.gene036428:CDS
TCTGTTTCGACAAGTTGCAA+TGG 0.640527 1.4:-65299854 MS.gene036428:intron
TCTGTTTCGACAAGTTGCAA+TGG 0.640527 1.4:-65300425 MS.gene036428:intron
ACCAAACCTGAATCATGCAA+GGG 0.670931 1.4:-65298807 MS.gene036428:CDS
CTTTGTCTGTGAATATGCAG+GGG 0.680388 1.4:-65298150 MS.gene036428:CDS
AGATAGAAAGATCTATTCCG+GGG 0.693698 1.4:-65300579 MS.gene036428:CDS
GTAACACTTGATGCAGACTG+GGG 0.705204 1.4:-65298056 MS.gene036428:CDS
GTGTTGTCTGTAGAAGACAC+TGG 0.713454 1.4:-65300704 MS.gene036428:CDS
TGTGGATGTGACATGCAGTG+TGG 0.717503 1.4:-65298744 MS.gene036428:CDS
ATTAGATGAAACCAACAGTG+AGG 0.720508 1.4:-65299123 MS.gene036428:CDS
ATTCTGATACACATCTGACA+GGG 0.723160 1.4:+65299391 None:intergenic
GGAAATCGGGTAGTGCAACG+AGG 0.738617 1.4:-65298723 MS.gene036428:CDS
GAAGGACTTAGGAATCTCGG+AGG 0.784980 1.4:-65301192 MS.gene036428:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATAAAAGTTAATTATA+CGG + chr1.4:65297517-65297536 None:intergenic 10.0%
!! AATTAAAAAAGTTAAGTTTG+TGG - chr1.4:65299965-65299984 MS.gene036428:CDS 15.0%
!! ATAAATTGTATGATAAAAAG+TGG - chr1.4:65297285-65297304 MS.gene036428:intron 15.0%
!! ATATCTTCATTATACTATAA+AGG + chr1.4:65299916-65299935 None:intergenic 15.0%
!! TAAATTGTATGATAAAAAGT+GGG - chr1.4:65297286-65297305 MS.gene036428:intron 15.0%
!! TATAAAACACTAGTAATTAA+AGG + chr1.4:65297470-65297489 None:intergenic 15.0%
!! TGATGAATATAATATAGTTA+CGG + chr1.4:65298856-65298875 None:intergenic 15.0%
!!! TTCAATAACATATTTCTAAT+TGG - chr1.4:65300488-65300507 MS.gene036428:CDS 15.0%
!! AAAATTCGTGCAAAAAATAT+AGG + chr1.4:65298787-65298806 None:intergenic 20.0%
!! AAAGAAAAAATGTTGTCTTA+TGG + chr1.4:65300917-65300936 None:intergenic 20.0%
!! AAGAAATAGTTGTACTTATT+TGG + chr1.4:65300660-65300679 None:intergenic 20.0%
!! AATAACAGAGAAAAGAATAT+TGG + chr1.4:65301099-65301118 None:intergenic 20.0%
!! AATAAGTTTAGCAACAATAA+CGG + chr1.4:65300145-65300164 None:intergenic 20.0%
!! ATGAATATAATATAGTTACG+GGG + chr1.4:65298854-65298873 None:intergenic 20.0%
!! ATGAATATAATCTAGATACA+GGG + chr1.4:65298278-65298297 None:intergenic 20.0%
!! GATGAATATAATATAGTTAC+GGG + chr1.4:65298855-65298874 None:intergenic 20.0%
!! TGATCCAAATAAAAACATAT+AGG + chr1.4:65300013-65300032 None:intergenic 20.0%
!! TGTTATGTTAGATGAAATTA+TGG - chr1.4:65299826-65299845 MS.gene036428:intron 20.0%
!! TTCATTATACTATAAAGGTA+TGG + chr1.4:65299911-65299930 None:intergenic 20.0%
!!! AGTACAACTATTTCTTTTTT+TGG - chr1.4:65300664-65300683 MS.gene036428:CDS 20.0%
!!! ATCTCCTATATGTTTTTATT+TGG - chr1.4:65300006-65300025 MS.gene036428:intron 20.0%
!!! CACAAATTTTAAAAGAAAAC+AGG - chr1.4:65298221-65298240 MS.gene036428:intron 20.0%
!!! CACGAATTTTAAAAGAAAAT+AGG - chr1.4:65298797-65298816 MS.gene036428:CDS 20.0%
!!! CATGGAATGTAATTAAATTT+TGG + chr1.4:65299332-65299351 None:intergenic 20.0%
!!! CTTCTAGAAAGAATATAATT+AGG + chr1.4:65297583-65297602 None:intergenic 20.0%
!!! GTACAACTATTTCTTTTTTT+GGG - chr1.4:65300665-65300684 MS.gene036428:CDS 20.0%
!!! TAATAAGAATCACCATTTTA+CGG + chr1.4:65300115-65300134 None:intergenic 20.0%
!!! TTTGGATCACTATATTATTT+TGG - chr1.4:65300024-65300043 MS.gene036428:intron 20.0%
!!! TTTTCTTGTTGATTTTCTAT+AGG - chr1.4:65298400-65298419 MS.gene036428:intron 20.0%
! AAATTCTCACATGATAATAG+TGG + chr1.4:65301234-65301253 None:intergenic 25.0%
! AAGGTATGGAATATAAATAG+AGG + chr1.4:65299897-65299916 None:intergenic 25.0%
! AATAGTTTACCTGCAATTTA+CGG + chr1.4:65299733-65299752 None:intergenic 25.0%
! AATATCAATATTACCCTTAC+AGG + chr1.4:65299105-65299124 None:intergenic 25.0%
! ACTATTATCATGTGAGAATT+TGG - chr1.4:65301233-65301252 MS.gene036428:CDS 25.0%
! ATACGAATGCAATATGTTTA+AGG - chr1.4:65299852-65299871 MS.gene036428:intron 25.0%
! ATAGATAGAAAGATCTATTC+CGG - chr1.4:65297843-65297862 MS.gene036428:intron 25.0%
! ATTTAAATCGAAATGGATCA+AGG - chr1.4:65299195-65299214 MS.gene036428:CDS 25.0%
! GATGAATATAATCTAGATAC+AGG + chr1.4:65298279-65298298 None:intergenic 25.0%
! TATGTTGAAGACATAACAAA+AGG - chr1.4:65299254-65299273 MS.gene036428:CDS 25.0%
! TATTGTTGCTAAACTTATTG+TGG - chr1.4:65300146-65300165 MS.gene036428:intron 25.0%
! TCAATCATAATGCAAGAAAT+TGG + chr1.4:65300863-65300882 None:intergenic 25.0%
! TCTGAATTTCTAACTTGATT+AGG + chr1.4:65299939-65299958 None:intergenic 25.0%
! TGTAAGGGTAATATTGATAT+TGG - chr1.4:65299104-65299123 MS.gene036428:CDS 25.0%
! TTATTGAAGCTGACAATTAT+CGG - chr1.4:65297312-65297331 MS.gene036428:intron 25.0%
!! AATAAGAATCACCATTTTAC+GGG + chr1.4:65300114-65300133 None:intergenic 25.0%
!! ATATTTTTCCTCTGAATAGA+AGG + chr1.4:65297921-65297940 None:intergenic 25.0%
!! CAACAATATATGCTTTTCTT+AGG + chr1.4:65298331-65298350 None:intergenic 25.0%
!!! ACTATTTCTTTTTTTGGGTT+TGG - chr1.4:65300670-65300689 MS.gene036428:CDS 25.0%
!!! TTATACAACTTTTTCAACAC+CGG + chr1.4:65297269-65297288 None:intergenic 25.0%
AAAATCAAGTGCAATTACTG+TGG - chr1.4:65300573-65300592 MS.gene036428:CDS 30.0%
AAAGATGTAGAGAAAAGTGA+CGG - chr1.4:65300827-65300846 MS.gene036428:CDS 30.0%
AGATGCAGAAAACTTTAAGT+TGG + chr1.4:65298304-65298323 None:intergenic 30.0%
AGGACAAATGAAAGAAAAAC+AGG + chr1.4:65298119-65298138 None:intergenic 30.0%
AGTTTCCTGTTTAAAAGTCT+TGG + chr1.4:65297754-65297773 None:intergenic 30.0%
ATATGTATGTCTATCATTGC+CGG + chr1.4:65300345-65300364 None:intergenic 30.0%
ATGTCAATATTTCACTTGCT+CGG - chr1.4:65299375-65299394 MS.gene036428:CDS 30.0%
CAAACAAGATGAATGCAAAA+CGG + chr1.4:65301063-65301082 None:intergenic 30.0%
CATTGTAAAGATCCAATTGA+TGG - chr1.4:65297885-65297904 MS.gene036428:intron 30.0%
CCAATTCAGAATTATATGAC+AGG - chr1.4:65300306-65300325 MS.gene036428:intron 30.0%
CCTGTCATATAATTCTGAAT+TGG + chr1.4:65300309-65300328 None:intergenic 30.0%
CTGAAGAATAAAAGATAAGC+AGG + chr1.4:65300189-65300208 None:intergenic 30.0%
CTTTGATACATTGTGTTACA+TGG + chr1.4:65299350-65299369 None:intergenic 30.0%
GAAATGAAGAGAAAAAGTGA+AGG + chr1.4:65300703-65300722 None:intergenic 30.0%
GGCTTGAATTTAAATCGAAA+TGG - chr1.4:65299188-65299207 MS.gene036428:CDS 30.0%
GTTAGTTAAATCCCGTAAAA+TGG - chr1.4:65300100-65300119 MS.gene036428:intron 30.0%
GTTTCCTGTTTAAAAGTCTT+GGG + chr1.4:65297753-65297772 None:intergenic 30.0%
TAAATTGTGATGCTGCATTA+AGG - chr1.4:65299162-65299181 MS.gene036428:CDS 30.0%
TAAGAGAGAGATAAAGAGTA+AGG - chr1.4:65300802-65300821 MS.gene036428:CDS 30.0%
TAAGTCCTTCATAGCATTAA+GGG + chr1.4:65297222-65297241 None:intergenic 30.0%
TAGATAGAAAGATCTATTCC+GGG - chr1.4:65297844-65297863 MS.gene036428:intron 30.0%
TATGTCTTCAACATATCGAA+AGG + chr1.4:65299249-65299268 None:intergenic 30.0%
TCTGGTTAGGAAGTTTATAA+AGG - chr1.4:65299643-65299662 MS.gene036428:intron 30.0%
TTGCAAGATTCATCAATCAT+AGG - chr1.4:65300453-65300472 MS.gene036428:CDS 30.0%
TTTCATTTGTCCTATCTGAA+TGG - chr1.4:65298707-65298726 MS.gene036428:CDS 30.0%
TTTGACAGTAAGATTTCCAT+TGG + chr1.4:65299012-65299031 None:intergenic 30.0%
! AATACACATAATGATGATGC+TGG + chr1.4:65299562-65299581 None:intergenic 30.0%
! ATACACATAATGATGATGCT+GGG + chr1.4:65299561-65299580 None:intergenic 30.0%
! ATTACAAACCAACTGATTTC+AGG + chr1.4:65298754-65298773 None:intergenic 30.0%
! CTGCTTATCTTTTATTCTTC+AGG - chr1.4:65300187-65300206 MS.gene036428:intron 30.0%
! GATCAGAAGATTAAAGTATC+AGG - chr1.4:65297948-65297967 MS.gene036428:intron 30.0%
! TGAATAGCCTCAAATGTTTT+TGG - chr1.4:65300519-65300538 MS.gene036428:CDS 30.0%
AAAATCTTCAGGGATGAAAG+AGG - chr1.4:65300616-65300635 MS.gene036428:CDS 35.0%
AAATCTTCAGGGATGAAAGA+GGG - chr1.4:65300617-65300636 MS.gene036428:CDS 35.0%
AACTGTTCTCTGAATACTCT+TGG - chr1.4:65299760-65299779 MS.gene036428:intron 35.0%
AACTTTCTATGAGTCCTGAA+AGG - chr1.4:65298090-65298109 MS.gene036428:CDS 35.0%
AATAACACCAGAACCTGTAA+GGG - chr1.4:65299089-65299108 MS.gene036428:CDS 35.0%
AATAGACATTCCTGTTGAAG+TGG - chr1.4:65301195-65301214 MS.gene036428:CDS 35.0%
AATATTACCCTTACAGGTTC+TGG + chr1.4:65299099-65299118 None:intergenic 35.0%
ACCAAGTGAAGTTTCTGTTT+AGG + chr1.4:65297657-65297676 None:intergenic 35.0%
ACCTAAACAGAAACTTCACT+TGG - chr1.4:65297653-65297672 MS.gene036428:intron 35.0%
ACGGGATTTAACTAACAATG+TGG + chr1.4:65300096-65300115 None:intergenic 35.0%
AGATAGAAAGATCTATTCCG+GGG - chr1.4:65297845-65297864 MS.gene036428:intron 35.0%
AGATGCATACTTTGAGTCAA+AGG - chr1.4:65297343-65297362 MS.gene036428:intron 35.0%
ATTAGATGAAACCAACAGTG+AGG - chr1.4:65299301-65299320 MS.gene036428:CDS 35.0%
ATTCAGGCCAAAAACATTTG+AGG + chr1.4:65300529-65300548 None:intergenic 35.0%
ATTCTGATACACATCTGACA+GGG + chr1.4:65299036-65299055 None:intergenic 35.0%
ATTTGTCCTATCTGAATGGT+AGG - chr1.4:65298711-65298730 MS.gene036428:CDS 35.0%
ATTTGTCCTGTCTGAATGAA+TGG - chr1.4:65298130-65298149 MS.gene036428:CDS 35.0%
CATTCTTAGTCCTCTCAATT+GGG + chr1.4:65299595-65299614 None:intergenic 35.0%
CTAAGTCCTTCATAGCATTA+AGG + chr1.4:65297223-65297242 None:intergenic 35.0%
CTATCAATTTGAGTCCTGAA+AGG - chr1.4:65298671-65298690 MS.gene036428:intron 35.0%
CTTAATGCTATGAAGGACTT+AGG - chr1.4:65297221-65297240 MS.gene036428:CDS 35.0%
CTTTGAGTCAAAGGAAGATA+AGG - chr1.4:65297352-65297371 MS.gene036428:intron 35.0%
GACCTAGATCAAAATCTTCA+GGG - chr1.4:65300606-65300625 MS.gene036428:CDS 35.0%
GAGTGAGATTAAGAGAAAGA+TGG + chr1.4:65300738-65300757 None:intergenic 35.0%
GATAAACCTAAGTTTCATCC+CGG - chr1.4:65297975-65297994 MS.gene036428:CDS 35.0%
GTTGCAATGGTAATCATGAT+AGG - chr1.4:65298012-65298031 MS.gene036428:CDS 35.0%
TAAGAGAAAGATGGAGACTA+AGG + chr1.4:65300729-65300748 None:intergenic 35.0%
TAAGGCATACTTTGAGTCAA+AGG - chr1.4:65297370-65297389 MS.gene036428:intron 35.0%
TAATAACACCAGAACCTGTA+AGG - chr1.4:65299088-65299107 MS.gene036428:CDS 35.0%
TAGTATCCTACCATTCAGAT+AGG + chr1.4:65298720-65298739 None:intergenic 35.0%
TATGAAGGACTTAGGAATCT+CGG - chr1.4:65297229-65297248 MS.gene036428:CDS 35.0%
TATTCTGATACACATCTGAC+AGG + chr1.4:65299037-65299056 None:intergenic 35.0%
TCATTCTTAGTCCTCTCAAT+TGG + chr1.4:65299596-65299615 None:intergenic 35.0%
TGACCTAGATCAAAATCTTC+AGG - chr1.4:65300605-65300624 MS.gene036428:CDS 35.0%
TGTTGTCTTATGGTAGACTT+CGG + chr1.4:65300907-65300926 None:intergenic 35.0%
TTAGCCAACTCAATCACTTA+AGG - chr1.4:65300548-65300567 MS.gene036428:CDS 35.0%
TTCTCACATGATAATAGTGG+CGG + chr1.4:65301231-65301250 None:intergenic 35.0%
TTCTTGACTCAAGAAGGAAA+GGG - chr1.4:65300212-65300231 MS.gene036428:intron 35.0%
! AGAAGATTTAACTTCTCCCA+AGG + chr1.4:65299141-65299160 None:intergenic 35.0%
! ATTACAAACCAGCTGATTTC+AGG + chr1.4:65298177-65298196 None:intergenic 35.0%
! CGTTTTGCATTCATCTTGTT+TGG - chr1.4:65301061-65301080 MS.gene036428:CDS 35.0%
! GAAGATTTAACTTCTCCCAA+GGG + chr1.4:65299140-65299159 None:intergenic 35.0%
! TACACATAATGATGATGCTG+GGG + chr1.4:65299560-65299579 None:intergenic 35.0%
! TTTTCCTCTGAATAGAAGGA+TGG + chr1.4:65297917-65297936 None:intergenic 35.0%
!! ATCCCTGAAGATTTTGATCT+AGG + chr1.4:65300611-65300630 None:intergenic 35.0%
!! CTGGTGTTATTATTGCATGT+GGG + chr1.4:65299080-65299099 None:intergenic 35.0%
!! TCTGGTGTTATTATTGCATG+TGG + chr1.4:65299081-65299100 None:intergenic 35.0%
!! TTAGCCTTAAGTGATTGAGT+TGG + chr1.4:65300555-65300574 None:intergenic 35.0%
!! TTTTGGAAATTCCTCACTGT+TGG + chr1.4:65299315-65299334 None:intergenic 35.0%
AACACTAGAAGATTTGCCCA+AGG - chr1.4:65300247-65300266 MS.gene036428:intron 40.0%
AATGACCTGCAGATTTCCAT+TGG + chr1.4:65298440-65298459 None:intergenic 40.0%
ACACTAGAAGATTTGCCCAA+GGG - chr1.4:65300248-65300267 MS.gene036428:intron 40.0%
ACCAAACCTGAATCATGCAA+GGG - chr1.4:65299617-65299636 MS.gene036428:intron 40.0%
AGAAAAACAGGAGACCTTTC+AGG + chr1.4:65298107-65298126 None:intergenic 40.0%
AGATTGCATGTCCATGGTAA+AGG - chr1.4:65299532-65299551 MS.gene036428:intron 40.0%
AGGTTTAAGCCGTAAATTGC+AGG - chr1.4:65299721-65299740 MS.gene036428:intron 40.0%
AGTGGGATTAAAGGATGAAG+AGG - chr1.4:65300397-65300416 MS.gene036428:intron 40.0%
AGTTGTCAGCTGATAAAACC+TGG + chr1.4:65297692-65297711 None:intergenic 40.0%
ATCAAGGCAAACTCTTTCTG+AGG - chr1.4:65299211-65299230 MS.gene036428:CDS 40.0%
ATCCTACCATTCATTCAGAC+AGG + chr1.4:65298139-65298158 None:intergenic 40.0%
ATCTTGCCTGGAAATTTGAG+AGG + chr1.4:65297784-65297803 None:intergenic 40.0%
ATGCAAAACGGTACAAGTGA+TGG + chr1.4:65301051-65301070 None:intergenic 40.0%
CCTTTGTCTGTGAATATGCA+GGG - chr1.4:65300273-65300292 MS.gene036428:intron 40.0%
CTTGGTAGATATAGACAACC+AGG - chr1.4:65297671-65297690 MS.gene036428:intron 40.0%
CTTTGTCTGTGAATATGCAG+GGG - chr1.4:65300274-65300293 MS.gene036428:intron 40.0%
GAATGGTAGGATACTAGTAG+TGG - chr1.4:65298147-65298166 MS.gene036428:CDS 40.0%
GCTTGGATGCAACACATAAT+GGG - chr1.4:65300426-65300445 MS.gene036428:CDS 40.0%
GTGTTTGCTTACACTTCACA+AGG - chr1.4:65299485-65299504 MS.gene036428:intron 40.0%
GTTCTTGACTCAAGAAGGAA+AGG - chr1.4:65300211-65300230 MS.gene036428:intron 40.0%
TACTAATCCAAGGGCAATCA+AGG - chr1.4:65297196-65297215 MS.gene036428:CDS 40.0%
TAGACTTCGGTACAAGTGAT+GGG + chr1.4:65300972-65300991 None:intergenic 40.0%
TATTTCACTTGCTCGGATTG+CGG - chr1.4:65299382-65299401 MS.gene036428:CDS 40.0%
TCCTGTTTAAAAGTCTTGGG+AGG + chr1.4:65297750-65297769 None:intergenic 40.0%
TCCTTTGTCTGTGAATATGC+AGG - chr1.4:65300272-65300291 MS.gene036428:intron 40.0%
TCTCCATCATGACAACTTAC+TGG + chr1.4:65297630-65297649 None:intergenic 40.0%
TCTGTTTCGACAAGTTGCAA+TGG - chr1.4:65297999-65298018 MS.gene036428:CDS 40.0%
TCTTGCCTGGAAATTTGAGA+GGG + chr1.4:65297783-65297802 None:intergenic 40.0%
TGAAACCCTCTCAAATTTCC+AGG - chr1.4:65297775-65297794 MS.gene036428:intron 40.0%
TGCAAAACGGTACAAGTGAT+GGG + chr1.4:65301050-65301069 None:intergenic 40.0%
TGCTTGGATGCAACACATAA+TGG - chr1.4:65300425-65300444 MS.gene036428:intron 40.0%
TGTAACACTTGATGCAGACT+GGG - chr1.4:65300367-65300386 MS.gene036428:intron 40.0%
TGTCAGAATTGCTCACTTTC+TGG + chr1.4:65298824-65298843 None:intergenic 40.0%
TTAGCCATCCTTCTATTCAG+AGG - chr1.4:65298481-65298500 MS.gene036428:intron 40.0%
TTTGACAGATTGCATGTCCA+TGG - chr1.4:65299526-65299545 MS.gene036428:intron 40.0%
! ACACAACAGCAAAAGCGTAA+AGG + chr1.4:65301129-65301148 None:intergenic 40.0%
! ACCTCCCAAGACTTTTAAAC+AGG - chr1.4:65297746-65297765 MS.gene036428:intron 40.0%
! ATTGGTTCTTCTTCACCCTT+GGG - chr1.4:65299122-65299141 MS.gene036428:CDS 40.0%
! GGAAGTTTATAAAGGAGTGC+TGG - chr1.4:65299651-65299670 MS.gene036428:intron 40.0%
!! AGTTTATAAAGGAGTGCTGG+AGG - chr1.4:65299654-65299673 MS.gene036428:intron 40.0%
!! GTGATTGAGTTGGCTAATTC+AGG + chr1.4:65300545-65300564 None:intergenic 40.0%
!! TATTGGTTCTTCTTCACCCT+TGG - chr1.4:65299121-65299140 MS.gene036428:CDS 40.0%
!! TCCATTGGAAGCATTTAGTG+AGG + chr1.4:65298425-65298444 None:intergenic 40.0%
!! TGTCAGAACTGCTCACTTTT+TGG + chr1.4:65298248-65298267 None:intergenic 40.0%
AAGACAGTCGCCTGAACAAT+CGG + chr1.4:65299423-65299442 None:intergenic 45.0%
ACAGATCCGGGATGAAACTT+AGG + chr1.4:65297984-65298003 None:intergenic 45.0%
ACATGATAATAGTGGCGGTC+AGG + chr1.4:65301226-65301245 None:intergenic 45.0%
AGATGTCCCTTGCATGATTC+AGG + chr1.4:65299626-65299645 None:intergenic 45.0%
CAACTTGTCGAAACAGATCC+GGG + chr1.4:65297996-65298015 None:intergenic 45.0%
CAAGGCCCTTAATGCTATGA+AGG - chr1.4:65297214-65297233 MS.gene036428:CDS 45.0%
CAGGTGTTCTTGACTCAAGA+AGG - chr1.4:65300206-65300225 MS.gene036428:intron 45.0%
CAGTCTGCATCAAGTGTTAC+AGG + chr1.4:65300368-65300387 None:intergenic 45.0%
CCCTGCATATTCACAGACAA+AGG + chr1.4:65300276-65300295 None:intergenic 45.0%
CTAGCCATCCTTCTATTCAG+AGG - chr1.4:65297910-65297929 MS.gene036428:intron 45.0%
CTCTGAATAGAAGGATGGCT+AGG + chr1.4:65297912-65297931 None:intergenic 45.0%
CTGTAACACTTGATGCAGAC+TGG - chr1.4:65300366-65300385 MS.gene036428:intron 45.0%
GACAGGATTGTGCATAGTAC+CGG - chr1.4:65300323-65300342 MS.gene036428:intron 45.0%
GACCAAACCTGAATCATGCA+AGG - chr1.4:65299616-65299635 MS.gene036428:intron 45.0%
GCAACTTGTCGAAACAGATC+CGG + chr1.4:65297997-65298016 None:intergenic 45.0%
GCCTCACTAAATGCTTCCAA+TGG - chr1.4:65298421-65298440 MS.gene036428:intron 45.0%
GCTCCAGTAAGTTGTCATGA+TGG - chr1.4:65297624-65297643 MS.gene036428:intron 45.0%
GGATGGCTAAGTCCATCAAT+TGG + chr1.4:65298471-65298490 None:intergenic 45.0%
GGCTCACTAAATGCTTCCAA+TGG - chr1.4:65298993-65299012 MS.gene036428:CDS 45.0%
GTAACACTTGATGCAGACTG+GGG - chr1.4:65300368-65300387 MS.gene036428:intron 45.0%
GTAGACTTCGGTACAAGTGA+TGG + chr1.4:65300973-65300992 None:intergenic 45.0%
GTCCTGTCTGAATGAATGGT+AGG - chr1.4:65298134-65298153 MS.gene036428:CDS 45.0%
GTGACATGCAGTGTGGAAAT+CGG - chr1.4:65299687-65299706 MS.gene036428:intron 45.0%
GTGGAGATCCTGAAATCAGT+TGG - chr1.4:65298743-65298762 MS.gene036428:CDS 45.0%
GTGTTGTCTGTAGAAGACAC+TGG - chr1.4:65297720-65297739 MS.gene036428:intron 45.0%
TCACAGACAAAGGATCCCTT+GGG + chr1.4:65300266-65300285 None:intergenic 45.0%
TGAATCATGCAAGGGACATC+TGG - chr1.4:65299625-65299644 MS.gene036428:intron 45.0%
TGACATGCAGTGTGGAAATC+GGG - chr1.4:65299688-65299707 MS.gene036428:intron 45.0%
TGCTTCCAATGGAAATCTGC+AGG - chr1.4:65298432-65298451 MS.gene036428:intron 45.0%
TGTGATGCTGCATTAAGGAC+TGG - chr1.4:65299167-65299186 MS.gene036428:CDS 45.0%
TGTGCATGCTCTCAAGAAAC+TGG - chr1.4:65299458-65299477 MS.gene036428:intron 45.0%
TGTGGGATTCATATCTTGCC+TGG + chr1.4:65297796-65297815 None:intergenic 45.0%
TTCACAGACAAAGGATCCCT+TGG + chr1.4:65300267-65300286 None:intergenic 45.0%
! GTTTCTTGAGAGCATGCACA+AGG + chr1.4:65299458-65299477 None:intergenic 45.0%
! TCCCTTGCATGATTCAGGTT+TGG + chr1.4:65299621-65299640 None:intergenic 45.0%
!! GATTGCCCTTGGATTAGTAG+TGG + chr1.4:65297195-65297214 None:intergenic 45.0%
!! GGATGAAGAGGCATTATGCT+TGG - chr1.4:65300409-65300428 MS.gene036428:intron 45.0%
!! GTAAAGAGTGCCCAATTGAG+AGG - chr1.4:65299582-65299601 MS.gene036428:intron 45.0%
AACCAGTTCGCAGGCATTCA+TGG - chr1.4:65297815-65297834 MS.gene036428:intron 50.0%
AATGCCTGCGAACTGGTTGT+GGG + chr1.4:65297813-65297832 None:intergenic 50.0%
ACTCAAGAAGGAAAGGGCTG+GGG - chr1.4:65300218-65300237 MS.gene036428:intron 50.0%
ACTTGATGCAGACTGGGGTT+CGG - chr1.4:65300373-65300392 MS.gene036428:intron 50.0%
ATCCATGAATGCCTGCGAAC+TGG + chr1.4:65297820-65297839 None:intergenic 50.0%
ATGCTGGGGTTCCTTTACCA+TGG + chr1.4:65299546-65299565 None:intergenic 50.0%
CATGCAAGGGACATCTGGTT+AGG - chr1.4:65299630-65299649 MS.gene036428:intron 50.0%
GAAGGACTTAGGAATCTCGG+AGG - chr1.4:65297232-65297251 MS.gene036428:CDS 50.0%
GACTCAAGAAGGAAAGGGCT+GGG - chr1.4:65300217-65300236 MS.gene036428:intron 50.0%
GATTGCTGCTCCGATTGTTC+AGG - chr1.4:65299410-65299429 MS.gene036428:CDS 50.0%
GCATGCTCTCAAGAAACTGG+TGG - chr1.4:65299461-65299480 MS.gene036428:intron 50.0%
GGATGGCTAGGTCCATCAAT+TGG + chr1.4:65297900-65297919 None:intergenic 50.0%
GGGTTCGGAAGTGGGATTAA+AGG - chr1.4:65300388-65300407 MS.gene036428:intron 50.0%
GTGGAGATCCTGAAATCAGC+TGG - chr1.4:65298166-65298185 MS.gene036428:CDS 50.0%
TCAGGTGTCTCCACTTCAAC+AGG + chr1.4:65301208-65301227 None:intergenic 50.0%
TGACTCAAGAAGGAAAGGGC+TGG - chr1.4:65300216-65300235 MS.gene036428:intron 50.0%
TGTGGATGTGACATGCAGTG+TGG - chr1.4:65299680-65299699 MS.gene036428:intron 50.0%
TTAAGGGCCTTGATTGCCCT+TGG + chr1.4:65297206-65297225 None:intergenic 50.0%
!! AAGGAGTGCTGGAGGAAATG+TGG - chr1.4:65299662-65299681 MS.gene036428:intron 50.0%
ACTTGCTCGGATTGCGGATG+AGG - chr1.4:65299388-65299407 MS.gene036428:CDS 55.0%
CTTAGGAATCTCGGAGGTCG+AGG - chr1.4:65297238-65297257 MS.gene036428:CDS 55.0%
GAATCCCACAACCAGTTCGC+AGG - chr1.4:65297806-65297825 MS.gene036428:intron 55.0%
GAATGCCTGCGAACTGGTTG+TGG + chr1.4:65297814-65297833 None:intergenic 55.0%
GGAAATCGGGTAGTGCAACG+AGG - chr1.4:65299701-65299720 MS.gene036428:intron 55.0%
ACCTGCAGATGATGCTGCCC+CGG + chr1.4:65297865-65297884 None:intergenic 60.0%
GCAGACTGGGGTTCGGAAGT+GGG - chr1.4:65300380-65300399 MS.gene036428:intron 60.0%
TGCAGACTGGGGTTCGGAAG+TGG - chr1.4:65300379-65300398 MS.gene036428:intron 60.0%
CTCGGAGGTCGAGGTGACAC+CGG - chr1.4:65297247-65297266 MS.gene036428:CDS 65.0%
TCCGGGGCAGCATCATCTGC+AGG - chr1.4:65297861-65297880 MS.gene036428:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 65297188 65301258 65297188 ID=MS.gene036428
chr1.4 mRNA 65297188 65301258 65297188 ID=MS.gene036428.t1;Parent=MS.gene036428
chr1.4 exon 65301046 65301258 65301046 ID=MS.gene036428.t1.exon1;Parent=MS.gene036428.t1
chr1.4 CDS 65301046 65301258 65301046 ID=cds.MS.gene036428.t1;Parent=MS.gene036428.t1
chr1.4 exon 65300426 65300846 65300426 ID=MS.gene036428.t1.exon2;Parent=MS.gene036428.t1
chr1.4 CDS 65300426 65300846 65300426 ID=cds.MS.gene036428.t1;Parent=MS.gene036428.t1
chr1.4 exon 65299855 65299992 65299855 ID=MS.gene036428.t1.exon3;Parent=MS.gene036428.t1
chr1.4 CDS 65299855 65299992 65299855 ID=cds.MS.gene036428.t1;Parent=MS.gene036428.t1
chr1.4 exon 65298704 65299452 65298704 ID=MS.gene036428.t1.exon4;Parent=MS.gene036428.t1
chr1.4 CDS 65298704 65299452 65298704 ID=cds.MS.gene036428.t1;Parent=MS.gene036428.t1
chr1.4 exon 65297972 65298237 65297972 ID=MS.gene036428.t1.exon5;Parent=MS.gene036428.t1
chr1.4 CDS 65297972 65298237 65297972 ID=cds.MS.gene036428.t1;Parent=MS.gene036428.t1
chr1.4 exon 65297188 65297269 65297188 ID=MS.gene036428.t1.exon6;Parent=MS.gene036428.t1
chr1.4 CDS 65297188 65297269 65297188 ID=cds.MS.gene036428.t1;Parent=MS.gene036428.t1
Gene Sequence

>MS.gene036428

ATGACCACTACTAATCCAAGGGCAATCAAGGCCCTTAATGCTATGAAGGACTTAGGAATCTCGGAGGTCGAGGTGACACCGGTGTTGAAAAAGTTGTATAAATTGTATGATAAAAAGTGGGAGCTTATTGAAGCTGACAATTATCGGACACTTATAGATGCATACTTTGAGTCAAAGGAAGATAAGGCATACTTTGAGTCAAAGGAAGATAAGGTTTCTCGATTCTTTGCTCATTTAAATATGTGTGTGTGTGCACACACATTGATTTGATCTGTTGTGCCTTTAATTACTAGTGTTTTATATGTCTTGACTTGCTAACATTTTGTCCGTATAATTAACTTTTATTTGTGATTGCTGTCTGAGTCTATGTTGATCAGTTCTTTTTTCTGACACCTAATTATATTCTTTCTAGAAGCAAGAAGATCATAAGAGAAAAGCTCCAGTAAGTTGTCATGATGGAGAGAAACCTAAACAGAAACTTCACTTGGTAGATATAGACAACCAGGTTTTATCAGCTGACAACTCAAGACAAGTGTTGTCTGTAGAAGACACTGGCATACCTCCCAAGACTTTTAAACAGGAAACTATGAAACCCTCTCAAATTTCCAGGCAAGATATGAATCCCACAACCAGTTCGCAGGCATTCATGGATGCTATAGATAGAAAGATCTATTCCGGGGCAGCATCATCTGCAGGTCATTGTAAAGATCCAATTGATGGACCTAGCCATCCTTCTATTCAGAGGAAAAATATGTCAAGTGATCAGAAGATTAAAGTATCAGGAAATGATAAACCTAAGTTTCATCCCGGATCTGTTTCGACAAGTTGCAATGGTAATCATGATAGGCTTTCTAACAACGTCTTTTACTTTTTTTCTTTTGTCGTTACATTAATTATGATTGAACTTTCTATGAGTCCTGAAAGGTCTCCTGTTTTTCTTTCATTTGTCCTGTCTGAATGAATGGTAGGATACTAGTAGTGGAGATCCTGAAATCAGCTGGTTTGTAATATCAATGTTTCTTAATATTTTTTGCACAAATTTTAAAAGAAAACAGGTCCAAAAAGTGAGCAGTTCTGACATCTTGTACCCTGTATCTAGATTATATTCATCAACCAACTTAAAGTTTTCTGCATCTGCTGCCTAAGAAAAGCATATATTGTTGCAGACTTGAACTTAGTTTGAAGTTTCTTTATATGTATGCTGCTTTGTGATTTTCTTGTTGATTTTCTATAGCCTCACTAAATGCTTCCAATGGAAATCTGCAGGTCATTGTAAAGATCCAATTGATGGACTTAGCCATCCTTCTATTCAGAGGAAAAATATGTCAAGTGATCAGAAGATTAAAGTATCAGGAAATGATAAACCTAAGTTTCATCCCGGATCTGTTTCGACAAGTTGCAATGGTAATCATGATAGGCTTTCTAACAATGTCTTTTACGTTCTTTCTTTTGTCAGTCGTTACATCAATTATGATTGAACTTTCTATCAATTTGAGTCCTGAAAGGTCTCCTGTTTTTCTTTCATTTGTCCTATCTGAATGGTAGGATACTAGTAGTGGAGATCCTGAAATCAGTTGGTTTGTAATATCAATGTTTCCTATATTTTTTGCACGAATTTTAAAAGAAAATAGGTCCAGAAAGTGAGCAATTCTGACATCTTGTACCCCGTAACTATATTATATTCATCAACTTAAAGTTTTCTGCGTCTGCTGCCTAAGAAAAGCATATATTGTTGCAGACTTGAACTTAGTTTGAAGTTTCTTTATATGTATGCTGCTTTGTGATTTTCTTGTTGATTTTCTATAGGCTCACTAAATGCTTCCAATGGAAATCTTACTGTCAAATCCCTGTCAGATGTGTATCAGAATACACACAAGATAGAAGCTACTCCCACATGCAATAATAACACCAGAACCTGTAAGGGTAATATTGATATTGGTTCTTCTTCACCCTTGGGAGAAGTTAAATCTTCTTTAAATTGTGATGCTGCATTAAGGACTGGCTTGAATTTAAATCGAAATGGATCAAGGCAAACTCTTTCTGAGGATAAAAAGAAATCCTTTCGATATGTTGAAGACATAACAAAAGGTTCTGAAAACATTCACATATCATTATTAGATGAAACCAACAGTGAGGAATTTCCAAAATTTAATTACATTCCATGTAACACAATGTATCAAAGTGCAAATGTCAATATTTCACTTGCTCGGATTGCGGATGAGGATTGCTGCTCCGATTGTTCAGGCGACTGTCTTTCTTTGTCAATTCCTTGTGCATGCTCTCAAGAAACTGGTGGAGTGTTTGCTTACACTTCACAAGGTTTGTTGAGTGAAAAGTTTTTGACAGATTGCATGTCCATGGTAAAGGAACCCCAGCATCATCATTATGTGTATTGTAAAGAGTGCCCAATTGAGAGGACTAAGAATGAGACCAAACCTGAATCATGCAAGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGAGGTTTAAGCCGTAAATTGCAGGTAAACTATTTCTTTAAAACTGTTCTCTGAATACTCTTGGAACTTATCTGTTGATTTTTCTTTTTTTACTTTAGTTAGTTTTATGTTATGTTAGATGAAATTATGGAAAATACGAATGCAATATGTTTAAGGAAGCATTTATATTTTTGATCCTCTATTTATATTCCATACCTTTATAGTATAATGAAGATATCCTAATCAAGTTAGAAATTCAGACTAACAAATTAAAAAAGTTAAGTTTGTGGAATGATCTTGTTGTATCAATCTCCTATATGTTTTTATTTGGATCACTATATTATTTTGGTTCTATTAGTGTTTCAACTGTCAATTTGTTCACATTGCTGCAATTGCCACATTGTTAGTTAAATCCCGTAAAATGGTGATTCTTATTATTACAAGCCGTTATTGTTGCTAAACTTATTGTGGTTGATCTATGATTGAGACCTGCTTATCTTTTATTCTTCAGGTGTTCTTGACTCAAGAAGGAAAGGGCTGGGGCGTTAGAACACTAGAAGATTTGCCCAAGGGATCCTTTGTCTGTGAATATGCAGGGGAGATTTTAACCAATTCAGAATTATATGACAGGATTGTGCATAGTACCGGCAATGATAGACATACATATCCTGTAACACTTGATGCAGACTGGGGTTCGGAAGTGGGATTAAAGGATGAAGAGGCATTATGCTTGGATGCAACACATAATGGGAATGTTGCAAGATTCATCAATCATAGGTGCTTTTCAAATTTCAATAACATATTTCTAATTGGAATGAAATTGAATAGCCTCAAATGTTTTTGGCCTGAATTAGCCAACTCAATCACTTAAGGCTAAAATCAAGTGCAATTACTGTGGCGCTGAAATTGACCTAGATCAAAATCTTCAGGGATGAAAGAGGGTTAATTGTTTACTTTTTCCAAATAAGTACAACTATTTCTTTTTTTGGGTTTGGATCATCTCCTTCACTTTTTCTCTTCATTTCTCTCCTTAGTCTCCATCTTTCTCTTAATCTCACTCTCTCTCTTCATTGAAATATAATAAAATAATCAAGACAGACAAATTAAGAGAGAGATAAAGAGTAAGGAGAAAGATGTAGAGAAAAGTGACGGAGATGATCATCCAATTTCTTGCATTATGATTGATTTTTTGTTGTTGCGTTCATGTCGAAGTCTACCATAAGACAACATTTTTTCTTTTTACTTTATTTTTCACACAAGATTGATTGAAGCCCATCACTTGTACCGAAGTCTACCATAAGACAACATTTTTTCTTTTTACTTTATTTTTCACACAAGATTGATTGAAGCCCATCACTTGTACCGTTTTGCATTCATCTTGTTTGGTTTTCATTACAGCCAATATTCTTTTCTCTGTTATTTCTAACACCTTTACGCTTTTGCTGTTGTGTTTTATTGCATATATGTTCTTGATTTCAGATGCTTCGATGCAAATCTAATAGACATTCCTGTTGAAGTGGAGACACCTGACCGCCACTATTATCATGTGAGAATTTGGTAG
Protein sequence

>MS.gene036428.t1

MTTTNPRAIKALNAMKDLGISEVEVTPVLKKLYKLYDKKWELIEADNYRTLIDAYFESKEDKAYFESKEDKKQEDHKRKAPVSCHDGEKPKQKLHLVDIDNQVLSADNSRQVLSVEDTGIPPKTFKQETMKPSQISRQDMNPTTSSQAFMDAIDRKIYSGAASSAGHCKDPIDGPSHPSIQRKNMSSDQKIKVSGNDKPKFHPGSVSTSCNGHCKDPIDGLSHPSIQRKNMSSDQKIKVSGNDKPKFHPGSVSTSCNGSLNASNGNLTVKSLSDVYQNTHKIEATPTCNNNTRTCKGNIDIGSSSPLGEVKSSLNCDAALRTGLNLNRNGSRQTLSEDKKKSFRYVEDITKGSENIHISLLDETNSEEFPKFNYIPCNTMYQSANVNISLARIADEDCCSDCSGDCLSLSIPCACSQETGGVFAYTSQGLLSEKFLTDCMSMVKEPQHHHYVYCKECPIERTKNETKPESCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLSRKLQVFLTQEGKGWGVRTLEDLPKGSFVCEYAGEILTNSELYDRIVHSTGNDRHTYPVTLDADWGSEVGLKDEEALCLDATHNGNVARFINHRCFDANLIDIPVEVETPDRHYYHVRIW