AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036496

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036496.t1 MTR_4g120380 66.846 371 118 3 1 366 1 371 8.97e-178 499
MS.gene036496.t1 MTR_4g119580 68.504 381 107 3 1 372 1 377 2.52e-176 495
MS.gene036496.t1 MTR_4g120380 63.564 376 129 5 1 369 1 375 4.36e-167 474
MS.gene036496.t1 MTR_2g437040 47.043 372 184 4 1 364 1 367 3.76e-109 325
MS.gene036496.t1 MTR_4g119550 49.541 327 164 1 39 364 51 377 1.47e-107 321
MS.gene036496.t1 MTR_2g436400 46.108 334 178 1 33 364 41 374 9.77e-104 311
MS.gene036496.t1 MTR_2g436460 46.591 352 187 1 15 365 23 374 5.93e-103 309
MS.gene036496.t1 MTR_2g437260 44.970 338 182 2 29 364 28 363 2.67e-102 308
MS.gene036496.t1 MTR_2g437030 44.800 375 196 3 1 364 79 453 9.14e-100 304
MS.gene036496.t1 MTR_2g437990 46.264 348 179 3 25 364 32 379 3.80e-99 301
MS.gene036496.t1 MTR_2g438010 46.176 340 178 2 30 364 61 400 1.00e-98 300
MS.gene036496.t1 MTR_2g076320 45.272 349 182 3 25 364 32 380 5.82e-98 297
MS.gene036496.t1 MTR_2g437160 46.110 347 182 4 23 364 46 392 7.62e-97 294
MS.gene036496.t1 MTR_2g437200 43.583 374 171 3 29 364 24 395 1.39e-96 293
MS.gene036496.t1 MTR_2g437130 43.407 364 203 2 1 364 8 368 2.70e-96 292
MS.gene036496.t1 MTR_2g437120 45.584 351 177 5 23 364 35 380 4.67e-96 293
MS.gene036496.t1 MTR_2g437150 46.439 351 177 4 25 364 37 387 8.06e-96 291
MS.gene036496.t1 MTR_2g437170 46.647 343 176 3 29 364 45 387 1.02e-95 291
MS.gene036496.t1 MTR_2g437100 47.734 331 166 3 41 364 62 392 6.52e-95 289
MS.gene036496.t1 MTR_2g437060 41.962 367 204 3 7 364 16 382 1.04e-94 288
MS.gene036496.t1 MTR_2g437960 45.289 329 175 2 41 364 55 383 5.36e-94 287
MS.gene036496.t1 MTR_2g437960 45.289 329 175 2 41 364 55 383 1.26e-93 287
MS.gene036496.t1 MTR_2g437020 44.767 344 182 4 25 364 28 367 3.07e-93 284
MS.gene036496.t1 MTR_2g437080 42.162 370 203 4 1 364 3 367 2.57e-92 282
MS.gene036496.t1 MTR_2g436440 44.109 331 183 1 36 364 43 373 5.83e-91 278
MS.gene036496.t1 MTR_2g437180 42.659 361 196 5 14 365 20 378 6.26e-91 279
MS.gene036496.t1 MTR_4g119570 56.349 252 77 1 116 367 13 231 6.75e-91 273
MS.gene036496.t1 MTR_2g437240 42.033 364 173 2 39 364 32 395 8.37e-90 276
MS.gene036496.t1 MTR_2g019810 42.618 359 196 5 8 364 6 356 2.10e-86 266
MS.gene036496.t1 MTR_2g019840 42.382 361 196 5 6 364 18 368 6.06e-86 266
MS.gene036496.t1 MTR_2g438020 41.713 362 173 2 41 364 73 434 5.14e-85 267
MS.gene036496.t1 MTR_2g437940 43.558 326 157 4 41 364 51 351 3.22e-82 256
MS.gene036496.t1 MTR_4g007490 32.754 345 222 5 28 364 25 367 4.69e-61 201
MS.gene036496.t1 MTR_3g450500 31.339 351 233 3 26 369 25 374 5.43e-59 196
MS.gene036496.t1 MTR_2g437160 49.405 168 85 0 197 364 134 301 1.53e-49 169
MS.gene036496.t1 MTR_2g437160 44.792 96 50 2 23 115 46 141 7.79e-15 75.1
MS.gene036496.t1 MTR_2g437090 51.656 151 73 0 214 364 5 155 1.13e-48 162
MS.gene036496.t1 MTR_8g080990 27.515 338 241 3 34 367 37 374 1.78e-36 136
MS.gene036496.t1 MTR_8g081000 25.360 347 255 3 34 376 50 396 8.18e-35 132
MS.gene036496.t1 MTR_8g081000 25.581 344 252 3 34 373 50 393 6.51e-34 130
MS.gene036496.t1 MTR_2g436370 37.766 188 110 4 5 186 9 195 8.55e-34 125
MS.gene036496.t1 MTR_8g081000 25.434 346 249 4 34 375 50 390 1.49e-32 126
MS.gene036496.t1 MTR_4g119615 69.565 69 15 1 309 377 26 88 1.46e-21 88.6
MS.gene036496.t1 MTR_3g085240 35.821 134 77 2 23 155 41 166 4.52e-14 72.0
MS.gene036496.t1 MTR_3g085240 37.895 95 38 2 266 356 169 246 2.56e-11 63.9
MS.gene036496.t1 MTR_2g034600 23.843 281 178 7 76 336 215 479 1.34e-13 72.4
MS.gene036496.t1 MTR_2g034600 23.843 281 178 7 76 336 280 544 1.68e-13 72.0
MS.gene036496.t1 MTR_2g034600 23.843 281 178 7 76 336 276 540 1.76e-13 72.0
MS.gene036496.t1 MTR_4g049400 37.288 118 71 2 21 136 33 149 9.98e-13 67.4
MS.gene036496.t1 MTR_2g019830 58.621 58 23 1 307 364 140 196 4.89e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036496.t1 AT5G07900 32.000 350 225 5 30 366 52 401 8.47e-64 209
MS.gene036496.t1 AT1G21150 28.534 382 252 6 1 362 4 384 4.28e-45 160
MS.gene036496.t1 AT1G21150 28.534 382 252 6 1 362 68 448 2.53e-44 159
MS.gene036496.t1 AT1G21150 28.529 333 230 4 37 362 17 348 2.14e-42 152
MS.gene036496.t1 AT1G61980 26.966 356 221 6 39 356 51 405 3.61e-41 150
MS.gene036496.t1 AT1G61980 26.966 356 221 6 39 356 51 405 3.61e-41 150
MS.gene036496.t1 AT1G61980 26.966 356 221 6 39 356 51 405 3.61e-41 150
MS.gene036496.t1 AT1G61990 28.329 413 238 10 1 364 5 408 5.90e-40 146
MS.gene036496.t1 AT1G61990 28.329 413 238 10 1 364 5 408 5.90e-40 146
MS.gene036496.t1 AT1G62120 25.936 374 236 6 39 371 55 428 4.81e-39 144
MS.gene036496.t1 AT1G61970 26.230 366 229 8 39 364 51 415 5.01e-39 144
MS.gene036496.t1 AT1G61970 26.230 366 229 8 39 364 51 415 5.01e-39 144
MS.gene036496.t1 AT1G61970 26.230 366 229 8 39 364 51 415 5.01e-39 144
MS.gene036496.t1 AT1G61970 26.230 366 229 8 39 364 51 415 5.01e-39 144
MS.gene036496.t1 AT1G61970 26.230 366 229 8 39 364 51 415 5.01e-39 144
MS.gene036496.t1 AT1G61970 26.230 366 229 8 39 364 51 415 5.01e-39 144
MS.gene036496.t1 AT1G61970 26.230 366 229 8 39 364 51 415 5.01e-39 144
MS.gene036496.t1 AT3G46950 26.214 412 226 9 27 364 37 444 2.54e-38 143
MS.gene036496.t1 AT1G62150 25.250 400 220 8 35 357 52 449 4.84e-36 137
MS.gene036496.t1 AT1G62110 26.456 412 223 10 33 364 44 455 2.28e-31 124
MS.gene036496.t1 AT1G62085 30.451 266 174 3 25 279 32 297 1.54e-29 119
MS.gene036496.t1 AT1G62085 30.451 266 174 3 25 279 32 297 1.54e-29 119
MS.gene036496.t1 AT5G64950 26.243 362 249 7 28 376 27 383 2.61e-27 111
MS.gene036496.t1 AT1G61960 28.626 262 179 5 26 280 34 294 5.15e-26 108
MS.gene036496.t1 AT1G61960 32.203 118 77 1 255 369 339 456 3.07e-15 77.4
MS.gene036496.t1 AT1G62010 23.894 339 217 6 73 372 71 407 1.09e-25 107
MS.gene036496.t1 AT5G23930 28.859 298 191 7 27 310 34 324 2.38e-25 107
MS.gene036496.t1 AT1G56380 23.097 381 242 12 32 364 18 395 2.45e-22 97.8
MS.gene036496.t1 AT1G56380 23.097 381 242 12 32 364 7 384 2.70e-22 97.8

Find 75 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTGAAACTTTGGCAAAA+TGG 0.240171 8.4:+12189189 None:intergenic
TGGAGGAGATAAAGGGTTTA+GGG 0.249954 8.4:-12188868 MS.gene036496:CDS
AACTCATCAGTCAAAATAAA+TGG 0.289834 8.4:+12188500 None:intergenic
TTTAGAGTAACGTAACATTT+TGG 0.318656 8.4:+12189460 None:intergenic
GTGGAGGAGATAAAGGGTTT+AGG 0.319395 8.4:-12188869 MS.gene036496:CDS
AAGGTCTGTGGAGGAGATAA+AGG 0.326067 8.4:-12188876 MS.gene036496:CDS
CCAGATCCAATAATGATAAA+AGG 0.326336 8.4:+12188905 None:intergenic
ATGCATGTAAAATTGAATCT+TGG 0.336264 8.4:+12188738 None:intergenic
GGTGCTGCCATGAGCAATAA+AGG 0.386758 8.4:+12188629 None:intergenic
AGACTAAATCCGAAAAGAAT+TGG 0.387498 8.4:+12188608 None:intergenic
GACAGTGACAATAATGTCTT+GGG 0.388401 8.4:+12189144 None:intergenic
TTCCAAGGGCTTCAGTTATC+CGG 0.401783 8.4:-12188571 MS.gene036496:CDS
TGCATGTAAAATTGAATCTT+GGG 0.402310 8.4:+12188739 None:intergenic
GTCTTGGGGAGAAGCACCTT+TGG 0.403398 8.4:+12189159 None:intergenic
ATCGAAAGGTTTGATAAAGA+AGG 0.405715 8.4:-12188540 MS.gene036496:CDS
CGCTATTAAAGTTATATCTC+GGG 0.407277 8.4:-12188433 MS.gene036496:CDS
AAGTTGGTGTCTTGAAGAAA+TGG 0.411701 8.4:-12188769 MS.gene036496:CDS
GGCTGTCACTAAATCTCAAT+GGG 0.436061 8.4:-12188798 MS.gene036496:CDS
CAAGTATTTACAATTTGCTT+AGG 0.436803 8.4:-12188934 MS.gene036496:CDS
TTGGATCAAACAGCTTGGTT+GGG 0.439509 8.4:-12188654 MS.gene036496:CDS
TTTGGATCAAACAGCTTGGT+TGG 0.442173 8.4:-12188655 MS.gene036496:CDS
CAGATCGTAGCATAAACTTT+GGG 0.443853 8.4:+12188705 None:intergenic
AGTTGGTGTCTTGAAGAAAT+GGG 0.446401 8.4:-12188768 MS.gene036496:CDS
TTGGGATCCTTTATTGCTCA+TGG 0.455848 8.4:-12188636 MS.gene036496:CDS
TGGCTGTCACTAAATCTCAA+TGG 0.459837 8.4:-12188799 MS.gene036496:CDS
TTTATCTGAATCTGAAGAAA+TGG 0.460894 8.4:+12189417 None:intergenic
ACGCTATTAAAGTTATATCT+CGG 0.466280 8.4:-12188434 MS.gene036496:CDS
TTTCTTCAAGACACCAACTT+TGG 0.474001 8.4:+12188772 None:intergenic
GCAGATCGTAGCATAAACTT+TGG 0.481781 8.4:+12188704 None:intergenic
AGGTCTGTGGAGGAGATAAA+GGG 0.485316 8.4:-12188875 MS.gene036496:CDS
GATGGGGTTTGAAACGATGA+TGG 0.491601 8.4:+12189216 None:intergenic
CTTCTTACCAAATCAAAAGC+AGG 0.493927 8.4:+12189073 None:intergenic
TGACAGTGACAATAATGTCT+TGG 0.497645 8.4:+12189143 None:intergenic
CGAGATCTAGCAATTGAAGT+TGG 0.500150 8.4:+12189004 None:intergenic
TCGAAAGGTTTGATAAAGAA+GGG 0.508372 8.4:-12188539 MS.gene036496:CDS
GGGTGGAATCCTGCGAATGA+TGG 0.511891 8.4:+12189237 None:intergenic
CAGGGATTATTTGTTTGTCA+AGG 0.513847 8.4:+12189092 None:intergenic
TAAAAGAATCGGGTTTGTGA+GGG 0.515496 8.4:+12189305 None:intergenic
GTTTGTCAAGGCTTGAACAA+AGG 0.516951 8.4:+12189104 None:intergenic
GTAATAGCTCTTTGATCAGA+AGG 0.518685 8.4:+12189043 None:intergenic
ATGGGGTTTGAAACGATGAT+GGG 0.526804 8.4:+12189217 None:intergenic
AACCTTTCGATAAAAGATAC+CGG 0.544149 8.4:+12188552 None:intergenic
TCTCAATGGGATGCCAAAGT+TGG 0.546789 8.4:-12188785 MS.gene036496:CDS
TACCGGATAACTGAAGCCCT+TGG 0.548805 8.4:+12188569 None:intergenic
ATGGTGGTGCTGAAAGAGAA+GGG 0.557322 8.4:+12189436 None:intergenic
CTGATGAGTTGTTTCTGCAA+CGG 0.559627 8.4:-12188487 MS.gene036496:CDS
TTATTGGATCTGGTTTGAGA+AGG 0.563650 8.4:-12188895 MS.gene036496:CDS
TCATACCTCATCAACAATTG+TGG 0.563809 8.4:-12189379 MS.gene036496:CDS
ATAAAAGAATCGGGTTTGTG+AGG 0.565444 8.4:+12189304 None:intergenic
AATGGTGGTGCTGAAAGAGA+AGG 0.565965 8.4:+12189435 None:intergenic
GATGGATTGTATCTGATCGT+TGG 0.567441 8.4:+12189255 None:intergenic
AGATACAATCCATCATTCGC+AGG 0.572684 8.4:-12189246 MS.gene036496:CDS
TAGAGAAAAGACTTCTTCCA+AGG 0.575654 8.4:-12188586 MS.gene036496:CDS
TTCTTACCAAATCAAAAGCA+GGG 0.579986 8.4:+12189074 None:intergenic
GGGTTTGAAACGATGATGGG+TGG 0.584866 8.4:+12189220 None:intergenic
GGCTTGAACAAAGGAAACGA+GGG 0.588494 8.4:+12189113 None:intergenic
CTGATCGTTGGAGAAACCAT+GGG 0.591154 8.4:+12189267 None:intergenic
ATAAACCACAATTGTTGATG+AGG 0.592618 8.4:+12189374 None:intergenic
ATCTGGTTTGAGAAGGTCTG+TGG 0.594791 8.4:-12188888 MS.gene036496:CDS
TCTGATCGTTGGAGAAACCA+TGG 0.601444 8.4:+12189266 None:intergenic
GAAGCTTTGAGAGCATCTTG+TGG 0.608539 8.4:+12189349 None:intergenic
AAAGTTTATGCTACGATCTG+CGG 0.612569 8.4:-12188702 MS.gene036496:CDS
GAGATATAACTTTAATAGCG+TGG 0.615989 8.4:+12188436 None:intergenic
AAAAGAATCGGGTTTGTGAG+GGG 0.622947 8.4:+12189306 None:intergenic
AGAGAAAAGACTTCTTCCAA+GGG 0.623231 8.4:-12188585 MS.gene036496:CDS
GTTGGTGTCTTGAAGAAATG+GGG 0.624621 8.4:-12188767 MS.gene036496:CDS
ATCTGAATCTGAAGAAATGG+TGG 0.644416 8.4:+12189420 None:intergenic
TGGTTTGAGAAGGTCTGTGG+AGG 0.646724 8.4:-12188885 MS.gene036496:CDS
GCTATTAAAGTTATATCTCG+GGG 0.649807 8.4:-12188432 MS.gene036496:CDS
AATAGAGAAGAGCTCTGAGG+CGG 0.651382 8.4:+12189494 None:intergenic
AGGCTTGAACAAAGGAAACG+AGG 0.672222 8.4:+12189112 None:intergenic
ATTAAAGTTATATCTCGGGG+AGG 0.712652 8.4:-12188429 MS.gene036496:CDS
AGGAATAGAGAAGAGCTCTG+AGG 0.723754 8.4:+12189491 None:intergenic
GAGGCGGTGACAATGAAACA+TGG 0.747817 8.4:+12189510 None:intergenic
ACAGTGACAATAATGTCTTG+GGG 0.749194 8.4:+12189145 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAAAGGAGATAAAAGAATC+GGG + chr8.4:12188613-12188632 None:intergenic 25.0%
! AAATTGAAACTTTGGCAAAA+TGG + chr8.4:12188719-12188738 None:intergenic 25.0%
! AACTCATCAGTCAAAATAAA+TGG + chr8.4:12189408-12189427 None:intergenic 25.0%
! ACGCTATTAAAGTTATATCT+CGG - chr8.4:12189471-12189490 MS.gene036496:CDS 25.0%
! ATGCATGTAAAATTGAATCT+TGG + chr8.4:12189170-12189189 None:intergenic 25.0%
! GAAAAAGGAGATAAAAGAAT+CGG + chr8.4:12188614-12188633 None:intergenic 25.0%
! GAAGCTAAAAATTGAAACTT+TGG + chr8.4:12188727-12188746 None:intergenic 25.0%
! TCAAGCAAAAAATGAACATT+TGG + chr8.4:12188934-12188953 None:intergenic 25.0%
! TGCATGTAAAATTGAATCTT+GGG + chr8.4:12189169-12189188 None:intergenic 25.0%
! TTTATCTGAATCTGAAGAAA+TGG + chr8.4:12188491-12188510 None:intergenic 25.0%
!! ACTAGTCCTTTTATCATTAT+TGG - chr8.4:12188994-12189013 MS.gene036496:CDS 25.0%
!! CAAGTATTTACAATTTGCTT+AGG - chr8.4:12188971-12188990 MS.gene036496:CDS 25.0%
!!! GTTCATTTTTTGCTTGATTT+TGG - chr8.4:12188937-12188956 MS.gene036496:CDS 25.0%
!!! TTTAGAGTAACGTAACATTT+TGG + chr8.4:12188448-12188467 None:intergenic 25.0%
!!! TTTCAATTTTTAGCTTCCAA+AGG - chr8.4:12188730-12188749 MS.gene036496:CDS 25.0%
AACCTTTCGATAAAAGATAC+CGG + chr8.4:12189356-12189375 None:intergenic 30.0%
ACACAAAAATTGTAGTTGGA+AGG + chr8.4:12189069-12189088 None:intergenic 30.0%
AGACTAAATCCGAAAAGAAT+TGG + chr8.4:12189300-12189319 None:intergenic 30.0%
ATAAACCACAATTGTTGATG+AGG + chr8.4:12188534-12188553 None:intergenic 30.0%
ATCGAAAGGTTTGATAAAGA+AGG - chr8.4:12189365-12189384 MS.gene036496:CDS 30.0%
CCAGATCCAATAATGATAAA+AGG + chr8.4:12189003-12189022 None:intergenic 30.0%
CGCTATTAAAGTTATATCTC+GGG - chr8.4:12189472-12189491 MS.gene036496:CDS 30.0%
GAGATATAACTTTAATAGCG+TGG + chr8.4:12189472-12189491 None:intergenic 30.0%
GCTATTAAAGTTATATCTCG+GGG - chr8.4:12189473-12189492 MS.gene036496:CDS 30.0%
TCGAAAGGTTTGATAAAGAA+GGG - chr8.4:12189366-12189385 MS.gene036496:CDS 30.0%
TGCTACACAAAAATTGTAGT+TGG + chr8.4:12189073-12189092 None:intergenic 30.0%
TTCTTACCAAATCAAAAGCA+GGG + chr8.4:12188834-12188853 None:intergenic 30.0%
! CCTTTTATCATTATTGGATC+TGG - chr8.4:12189000-12189019 MS.gene036496:CDS 30.0%
! CTACAATTTTTGTGTAGCAT+TGG - chr8.4:12189074-12189093 MS.gene036496:CDS 30.0%
!! AATAATCCCTGCTTTTGATT+TGG - chr8.4:12188825-12188844 MS.gene036496:CDS 30.0%
!!! TTTGGCAAAATGGTTTTGAT+GGG + chr8.4:12188709-12188728 None:intergenic 30.0%
AAAGTTTATGCTACGATCTG+CGG - chr8.4:12189203-12189222 MS.gene036496:CDS 35.0%
ACAGTGACAATAATGTCTTG+GGG + chr8.4:12188763-12188782 None:intergenic 35.0%
AGAGAAAAGACTTCTTCCAA+GGG - chr8.4:12189320-12189339 MS.gene036496:CDS 35.0%
ATAAAAGAATCGGGTTTGTG+AGG + chr8.4:12188604-12188623 None:intergenic 35.0%
ATCTGAATCTGAAGAAATGG+TGG + chr8.4:12188488-12188507 None:intergenic 35.0%
ATTAAAGTTATATCTCGGGG+AGG - chr8.4:12189476-12189495 MS.gene036496:CDS 35.0%
CAGATCGTAGCATAAACTTT+GGG + chr8.4:12189203-12189222 None:intergenic 35.0%
CAGGGATTATTTGTTTGTCA+AGG + chr8.4:12188816-12188835 None:intergenic 35.0%
CTTCTTACCAAATCAAAAGC+AGG + chr8.4:12188835-12188854 None:intergenic 35.0%
GACAGTGACAATAATGTCTT+GGG + chr8.4:12188764-12188783 None:intergenic 35.0%
GTAATAGCTCTTTGATCAGA+AGG + chr8.4:12188865-12188884 None:intergenic 35.0%
TAAAAGAATCGGGTTTGTGA+GGG + chr8.4:12188603-12188622 None:intergenic 35.0%
TAGAGAAAAGACTTCTTCCA+AGG - chr8.4:12189319-12189338 MS.gene036496:CDS 35.0%
TCATACCTCATCAACAATTG+TGG - chr8.4:12188526-12188545 MS.gene036496:CDS 35.0%
TGACAGTGACAATAATGTCT+TGG + chr8.4:12188765-12188784 None:intergenic 35.0%
TTTCTTCAAGACACCAACTT+TGG + chr8.4:12189136-12189155 None:intergenic 35.0%
! AGTTGGTGTCTTGAAGAAAT+GGG - chr8.4:12189137-12189156 MS.gene036496:CDS 35.0%
! ATCCGGTATCTTTTATCGAA+AGG - chr8.4:12189351-12189370 MS.gene036496:CDS 35.0%
! TCAATGCAGTGATGAGTTTT+TGG - chr8.4:12189232-12189251 MS.gene036496:CDS 35.0%
! TTATTGGATCTGGTTTGAGA+AGG - chr8.4:12189010-12189029 MS.gene036496:CDS 35.0%
!! AAGTTGGTGTCTTGAAGAAA+TGG - chr8.4:12189136-12189155 MS.gene036496:CDS 35.0%
!! AGTTTTTGGATCAAACAGCT+TGG - chr8.4:12189246-12189265 MS.gene036496:CDS 35.0%
!!! AACGTAACATTTTGGTGATG+AGG + chr8.4:12188440-12188459 None:intergenic 35.0%
!!! ATCTCCTTTTTCAAAACCCA+TGG - chr8.4:12188622-12188641 MS.gene036496:CDS 35.0%
!!! CTTTGGCAAAATGGTTTTGA+TGG + chr8.4:12188710-12188729 None:intergenic 35.0%
!!! GAAACCATGGGTTTTGAAAA+AGG + chr8.4:12188629-12188648 None:intergenic 35.0%
!!! TTGGCAAAATGGTTTTGATG+GGG + chr8.4:12188708-12188727 None:intergenic 35.0%
AAAAGAATCGGGTTTGTGAG+GGG + chr8.4:12188602-12188621 None:intergenic 40.0%
AGATACAATCCATCATTCGC+AGG - chr8.4:12188659-12188678 MS.gene036496:CDS 40.0%
CGAGATCTAGCAATTGAAGT+TGG + chr8.4:12188904-12188923 None:intergenic 40.0%
GCAGATCGTAGCATAAACTT+TGG + chr8.4:12189204-12189223 None:intergenic 40.0%
GGCTGTCACTAAATCTCAAT+GGG - chr8.4:12189107-12189126 MS.gene036496:CDS 40.0%
GTTTGTCAAGGCTTGAACAA+AGG + chr8.4:12188804-12188823 None:intergenic 40.0%
TGGAGGAGATAAAGGGTTTA+GGG - chr8.4:12189037-12189056 MS.gene036496:CDS 40.0%
TGGCTGTCACTAAATCTCAA+TGG - chr8.4:12189106-12189125 MS.gene036496:CDS 40.0%
TTGGATCAAACAGCTTGGTT+GGG - chr8.4:12189251-12189270 MS.gene036496:CDS 40.0%
TTGGGATCCTTTATTGCTCA+TGG - chr8.4:12189269-12189288 MS.gene036496:CDS 40.0%
TTTGGATCAAACAGCTTGGT+TGG - chr8.4:12189250-12189269 MS.gene036496:CDS 40.0%
! ATGGCAGCACCAATTCTTTT+CGG - chr8.4:12189288-12189307 MS.gene036496:CDS 40.0%
! ATGGGGTTTGAAACGATGAT+GGG + chr8.4:12188691-12188710 None:intergenic 40.0%
! GTTGGTGTCTTGAAGAAATG+GGG - chr8.4:12189138-12189157 MS.gene036496:CDS 40.0%
!! CTGATGAGTTGTTTCTGCAA+CGG - chr8.4:12189418-12189437 MS.gene036496:CDS 40.0%
!! GATGGATTGTATCTGATCGT+TGG + chr8.4:12188653-12188672 None:intergenic 40.0%
!! TGTAGCATTGGCGACAAAAA+TGG - chr8.4:12189086-12189105 MS.gene036496:CDS 40.0%
!!! GTAACATTTTGGTGATGAGG+AGG + chr8.4:12188437-12188456 None:intergenic 40.0%
AAGGTCTGTGGAGGAGATAA+AGG - chr8.4:12189029-12189048 MS.gene036496:CDS 45.0%
AGGAATAGAGAAGAGCTCTG+AGG + chr8.4:12188417-12188436 None:intergenic 45.0%
AGGCTTGAACAAAGGAAACG+AGG + chr8.4:12188796-12188815 None:intergenic 45.0%
AGGTCTGTGGAGGAGATAAA+GGG - chr8.4:12189030-12189049 MS.gene036496:CDS 45.0%
CTGATCGTTGGAGAAACCAT+GGG + chr8.4:12188641-12188660 None:intergenic 45.0%
GGCTTGAACAAAGGAAACGA+GGG + chr8.4:12188795-12188814 None:intergenic 45.0%
GTGGAGGAGATAAAGGGTTT+AGG - chr8.4:12189036-12189055 MS.gene036496:CDS 45.0%
TCTCAATGGGATGCCAAAGT+TGG - chr8.4:12189120-12189139 MS.gene036496:CDS 45.0%
TCTGATCGTTGGAGAAACCA+TGG + chr8.4:12188642-12188661 None:intergenic 45.0%
TTCCAAGGGCTTCAGTTATC+CGG - chr8.4:12189334-12189353 MS.gene036496:CDS 45.0%
! AATGGTGGTGCTGAAAGAGA+AGG + chr8.4:12188473-12188492 None:intergenic 45.0%
! ATCTGGTTTGAGAAGGTCTG+TGG - chr8.4:12189017-12189036 MS.gene036496:CDS 45.0%
! ATGGTGGTGCTGAAAGAGAA+GGG + chr8.4:12188472-12188491 None:intergenic 45.0%
! GATGGGGTTTGAAACGATGA+TGG + chr8.4:12188692-12188711 None:intergenic 45.0%
!! AATAGAGAAGAGCTCTGAGG+CGG + chr8.4:12188414-12188433 None:intergenic 45.0%
!! GAAGCTTTGAGAGCATCTTG+TGG + chr8.4:12188559-12188578 None:intergenic 45.0%
TACCGGATAACTGAAGCCCT+TGG + chr8.4:12189339-12189358 None:intergenic 50.0%
TGGTTTGAGAAGGTCTGTGG+AGG - chr8.4:12189020-12189039 MS.gene036496:CDS 50.0%
! GGTGCTGCCATGAGCAATAA+AGG + chr8.4:12189279-12189298 None:intergenic 50.0%
!! GGGTTTGAAACGATGATGGG+TGG + chr8.4:12188688-12188707 None:intergenic 50.0%
GGGTGGAATCCTGCGAATGA+TGG + chr8.4:12188671-12188690 None:intergenic 55.0%
!! GTCTTGGGGAGAAGCACCTT+TGG + chr8.4:12188749-12188768 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 12188397 12189530 12188397 ID=MS.gene036496
chr8.4 mRNA 12188397 12189530 12188397 ID=MS.gene036496.t1;Parent=MS.gene036496
chr8.4 exon 12188397 12189530 12188397 ID=MS.gene036496.t1.exon1;Parent=MS.gene036496.t1
chr8.4 CDS 12188397 12189530 12188397 ID=cds.MS.gene036496.t1;Parent=MS.gene036496.t1
Gene Sequence

>MS.gene036496

ATGTTTCATTGTCACCGCCTCAGAGCTCTTCTCTATTCCTCCTCATCACCAAAATGTTACGTTACTCTAAAACCCTTCTCTTTCAGCACCACCATTTCTTCAGATTCAGATAAACAATCTTTCACAGTTTCATACCTCATCAACAATTGTGGTTTATCTCCACAAGATGCTCTCAAAGCTTCTAAACGTTTTCATTTCAATACCCCTCACAAACCCGATTCTTTTATCTCCTTTTTCAAAACCCATGGTTTCTCCAACGATCAGATACAATCCATCATTCGCAGGATTCCACCCATCATCGTTTCAAACCCCATCAAAACCATTTTGCCAAAGTTTCAATTTTTAGCTTCCAAAGGTGCTTCTCCCCAAGACATTATTGTCACTGTCACTAAAAGCCCTCGTTTCCTTTGTTCAAGCCTTGACAAACAAATAATCCCTGCTTTTGATTTGGTAAGAAGTTTCTGTCCTTCTGATCAAAGAGCTATTACTATAATAAATTCTTATCCAACTTCAATTGCTAGATCTCGCATGAAACCAAATGTTCATTTTTTGCTTGATTTTGGAGTCAGTCGCGCAAGTATTTACAATTTGCTTAGGACTAGTCCTTTTATCATTATTGGATCTGGTTTGAGAAGGTCTGTGGAGGAGATAAAGGGTTTAGGGTTTGAACCTTCCAACTACAATTTTTGTGTAGCATTGGCGACAAAAATGGCTGTCACTAAATCTCAATGGGATGCCAAAGTTGGTGTCTTGAAGAAATGGGGCTTGTCCCAAGATTCAATTTTACATGCATATAAAAAGAACCCAAAGTTTATGCTACGATCTGCGGACAAACTCAATGCAGTGATGAGTTTTTGGATCAAACAGCTTGGTTGGGATCCTTTATTGCTCATGGCAGCACCAATTCTTTTCGGATTTAGTCTAGAGAAAAGACTTCTTCCAAGGGCTTCAGTTATCCGGTATCTTTTATCGAAAGGTTTGATAAAGAAGGGTGCTAGCTTAACTGCACCATTTATTTTGACTGATGAGTTGTTTCTGCAACGGTTTGTGAATCGTTTTGAAGAAGAAGTATCCACGCTATTAAAGTTATATCTCGGGGAGGATGCTAGCATCTGCTGCTTAGATAAGTTGTGA
Protein sequence

>MS.gene036496.t1

MFHCHRLRALLYSSSSPKCYVTLKPFSFSTTISSDSDKQSFTVSYLINNCGLSPQDALKASKRFHFNTPHKPDSFISFFKTHGFSNDQIQSIIRRIPPIIVSNPIKTILPKFQFLASKGASPQDIIVTVTKSPRFLCSSLDKQIIPAFDLVRSFCPSDQRAITIINSYPTSIARSRMKPNVHFLLDFGVSRASIYNLLRTSPFIIIGSGLRRSVEEIKGLGFEPSNYNFCVALATKMAVTKSQWDAKVGVLKKWGLSQDSILHAYKKNPKFMLRSADKLNAVMSFWIKQLGWDPLLLMAAPILFGFSLEKRLLPRASVIRYLLSKGLIKKGASLTAPFILTDELFLQRFVNRFEEEVSTLLKLYLGEDASICCLDKL