Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036499.t1 | XP_024637179.1 | 92.3 | 246 | 19 | 0 | 26 | 271 | 147 | 392 | 3.80E-123 | 451.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036499.t1 | G7JKC7 | 92.3 | 246 | 19 | 0 | 26 | 271 | 147 | 392 | 2.7e-123 | 451.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene036499.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036499.t1 | MTR_4g119550 | 92.276 | 246 | 19 | 0 | 26 | 271 | 147 | 392 | 1.62e-170 | 476 |
MS.gene036499.t1 | MTR_2g437060 | 50.820 | 244 | 120 | 0 | 26 | 269 | 152 | 395 | 9.93e-86 | 261 |
MS.gene036499.t1 | MTR_2g436400 | 52.101 | 238 | 114 | 0 | 26 | 263 | 144 | 381 | 3.30e-85 | 259 |
MS.gene036499.t1 | MTR_2g437080 | 48.134 | 268 | 137 | 1 | 4 | 269 | 113 | 380 | 5.64e-84 | 256 |
MS.gene036499.t1 | MTR_2g437020 | 53.527 | 241 | 109 | 2 | 31 | 269 | 141 | 380 | 2.92e-83 | 254 |
MS.gene036499.t1 | MTR_2g436440 | 48.133 | 241 | 125 | 0 | 28 | 268 | 145 | 385 | 1.39e-80 | 248 |
MS.gene036499.t1 | MTR_2g437130 | 50.187 | 267 | 129 | 2 | 4 | 267 | 114 | 379 | 1.72e-80 | 248 |
MS.gene036499.t1 | MTR_2g437040 | 46.914 | 243 | 129 | 0 | 27 | 269 | 138 | 380 | 2.07e-80 | 247 |
MS.gene036499.t1 | MTR_2g437240 | 52.083 | 240 | 112 | 1 | 31 | 267 | 167 | 406 | 2.40e-80 | 248 |
MS.gene036499.t1 | MTR_2g437030 | 48.770 | 244 | 125 | 0 | 26 | 269 | 223 | 466 | 1.99e-78 | 245 |
MS.gene036499.t1 | MTR_2g437200 | 49.367 | 237 | 117 | 1 | 26 | 259 | 162 | 398 | 4.61e-77 | 239 |
MS.gene036499.t1 | MTR_2g437180 | 48.413 | 252 | 125 | 2 | 19 | 267 | 139 | 388 | 2.94e-75 | 234 |
MS.gene036499.t1 | MTR_2g438020 | 47.600 | 250 | 128 | 1 | 19 | 265 | 194 | 443 | 2.08e-74 | 235 |
MS.gene036499.t1 | MTR_2g438010 | 44.364 | 275 | 142 | 3 | 1 | 267 | 140 | 411 | 7.05e-74 | 232 |
MS.gene036499.t1 | MTR_2g437990 | 45.185 | 270 | 144 | 3 | 4 | 269 | 123 | 392 | 2.26e-73 | 231 |
MS.gene036499.t1 | MTR_2g437960 | 44.727 | 275 | 145 | 4 | 1 | 269 | 123 | 396 | 4.10e-73 | 229 |
MS.gene036499.t1 | MTR_2g437160 | 44.444 | 270 | 146 | 3 | 4 | 269 | 136 | 405 | 8.05e-73 | 229 |
MS.gene036499.t1 | MTR_2g437960 | 44.727 | 275 | 145 | 4 | 1 | 269 | 123 | 396 | 8.37e-73 | 229 |
MS.gene036499.t1 | MTR_2g437120 | 45.421 | 273 | 141 | 5 | 1 | 267 | 121 | 391 | 5.87e-72 | 227 |
MS.gene036499.t1 | MTR_2g076320 | 44.981 | 269 | 143 | 3 | 4 | 267 | 123 | 391 | 8.90e-72 | 226 |
MS.gene036499.t1 | MTR_2g436460 | 44.106 | 263 | 142 | 3 | 4 | 262 | 118 | 379 | 4.74e-71 | 223 |
MS.gene036499.t1 | MTR_2g437170 | 47.561 | 246 | 123 | 3 | 28 | 267 | 153 | 398 | 6.49e-71 | 224 |
MS.gene036499.t1 | MTR_2g437150 | 47.154 | 246 | 124 | 3 | 28 | 267 | 153 | 398 | 9.17e-71 | 223 |
MS.gene036499.t1 | MTR_2g437100 | 48.739 | 238 | 116 | 3 | 28 | 259 | 158 | 395 | 5.78e-70 | 221 |
MS.gene036499.t1 | MTR_2g437940 | 48.214 | 224 | 113 | 1 | 47 | 267 | 139 | 362 | 3.21e-68 | 216 |
MS.gene036499.t1 | MTR_4g119580 | 44.961 | 258 | 136 | 3 | 4 | 257 | 115 | 370 | 1.25e-66 | 212 |
MS.gene036499.t1 | MTR_2g437260 | 40.664 | 241 | 141 | 1 | 26 | 264 | 131 | 371 | 2.03e-64 | 206 |
MS.gene036499.t1 | MTR_2g437090 | 52.381 | 168 | 80 | 0 | 102 | 269 | 1 | 168 | 1.12e-62 | 195 |
MS.gene036499.t1 | MTR_2g437160 | 41.270 | 252 | 131 | 2 | 35 | 269 | 63 | 314 | 1.26e-61 | 197 |
MS.gene036499.t1 | MTR_2g019840 | 41.111 | 270 | 151 | 5 | 4 | 268 | 114 | 380 | 1.48e-61 | 199 |
MS.gene036499.t1 | MTR_4g120380 | 38.911 | 257 | 153 | 2 | 4 | 257 | 115 | 370 | 2.34e-58 | 190 |
MS.gene036499.t1 | MTR_2g019810 | 41.762 | 261 | 144 | 5 | 4 | 259 | 102 | 359 | 3.39e-57 | 187 |
MS.gene036499.t1 | MTR_4g120380 | 39.662 | 237 | 139 | 2 | 4 | 237 | 115 | 350 | 4.79e-54 | 180 |
MS.gene036499.t1 | MTR_4g119570 | 40.086 | 232 | 106 | 1 | 26 | 257 | 31 | 229 | 7.48e-53 | 172 |
MS.gene036499.t1 | MTR_3g450500 | 32.210 | 267 | 163 | 5 | 4 | 257 | 109 | 370 | 1.36e-42 | 149 |
MS.gene036499.t1 | MTR_4g007490 | 31.321 | 265 | 167 | 5 | 4 | 257 | 108 | 368 | 2.79e-34 | 127 |
MS.gene036499.t1 | MTR_2g436380 | 37.931 | 116 | 63 | 4 | 102 | 216 | 1 | 108 | 5.84e-18 | 82.0 |
MS.gene036499.t1 | MTR_8g081000 | 23.077 | 247 | 186 | 3 | 14 | 257 | 140 | 385 | 5.50e-17 | 80.1 |
MS.gene036499.t1 | MTR_8g081000 | 23.077 | 247 | 186 | 3 | 14 | 257 | 140 | 385 | 5.81e-17 | 80.1 |
MS.gene036499.t1 | MTR_8g081000 | 23.077 | 247 | 186 | 3 | 14 | 257 | 140 | 385 | 6.08e-17 | 80.1 |
MS.gene036499.t1 | MTR_8g080990 | 24.380 | 242 | 167 | 4 | 21 | 253 | 134 | 368 | 6.33e-17 | 80.1 |
MS.gene036499.t1 | MTR_2g019830 | 51.852 | 81 | 38 | 1 | 184 | 264 | 125 | 204 | 7.12e-17 | 77.4 |
MS.gene036499.t1 | MTR_3g085240 | 44.944 | 89 | 32 | 1 | 161 | 249 | 176 | 247 | 7.49e-15 | 72.8 |
MS.gene036499.t1 | MTR_4g119615 | 53.061 | 49 | 23 | 0 | 201 | 249 | 26 | 74 | 1.19e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036499.t1 | AT5G07900 | 32.443 | 262 | 167 | 6 | 4 | 256 | 139 | 399 | 3.17e-43 | 152 |
MS.gene036499.t1 | AT1G21150 | 28.137 | 263 | 179 | 5 | 3 | 256 | 89 | 350 | 3.88e-25 | 102 |
MS.gene036499.t1 | AT1G21150 | 28.352 | 261 | 177 | 5 | 3 | 254 | 125 | 384 | 7.95e-25 | 102 |
MS.gene036499.t1 | AT1G21150 | 28.137 | 263 | 179 | 5 | 1 | 254 | 187 | 448 | 1.39e-24 | 102 |
MS.gene036499.t1 | AT5G64950 | 26.493 | 268 | 183 | 5 | 4 | 257 | 109 | 376 | 6.72e-17 | 80.1 |
MS.gene036499.t1 | AT1G61970 | 24.800 | 250 | 130 | 5 | 51 | 242 | 150 | 399 | 3.65e-13 | 69.3 |
MS.gene036499.t1 | AT1G61970 | 24.800 | 250 | 130 | 5 | 51 | 242 | 150 | 399 | 3.65e-13 | 69.3 |
MS.gene036499.t1 | AT1G61970 | 24.800 | 250 | 130 | 5 | 51 | 242 | 150 | 399 | 3.65e-13 | 69.3 |
MS.gene036499.t1 | AT1G61970 | 24.800 | 250 | 130 | 5 | 51 | 242 | 150 | 399 | 3.65e-13 | 69.3 |
MS.gene036499.t1 | AT1G61970 | 24.800 | 250 | 130 | 5 | 51 | 242 | 150 | 399 | 3.65e-13 | 69.3 |
MS.gene036499.t1 | AT1G61970 | 24.800 | 250 | 130 | 5 | 51 | 242 | 150 | 399 | 3.65e-13 | 69.3 |
MS.gene036499.t1 | AT1G61970 | 24.800 | 250 | 130 | 5 | 51 | 242 | 150 | 399 | 3.65e-13 | 69.3 |
MS.gene036499.t1 | AT1G61990 | 24.889 | 225 | 128 | 4 | 72 | 256 | 185 | 408 | 7.57e-13 | 68.2 |
MS.gene036499.t1 | AT1G61990 | 24.889 | 225 | 128 | 4 | 72 | 256 | 185 | 408 | 7.57e-13 | 68.2 |
MS.gene036499.t1 | AT1G61980 | 24.880 | 209 | 120 | 4 | 72 | 243 | 192 | 400 | 3.49e-12 | 66.2 |
MS.gene036499.t1 | AT1G61980 | 24.880 | 209 | 120 | 4 | 72 | 243 | 192 | 400 | 3.49e-12 | 66.2 |
MS.gene036499.t1 | AT1G61980 | 24.880 | 209 | 120 | 4 | 72 | 243 | 192 | 400 | 3.49e-12 | 66.2 |
MS.gene036499.t1 | AT1G62110 | 24.631 | 203 | 134 | 5 | 52 | 243 | 246 | 440 | 3.70e-11 | 63.5 |
Find 51 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAACGATTAATACATTTAA+TGG | 0.168353 | 8.4:+12228389 | None:intergenic |
TCAGTTAGGTTTGAATTCTT+TGG | 0.234752 | 8.4:-12228007 | MS.gene036499:CDS |
TATGACAGAGAAGTTGTTTC+TGG | 0.244337 | 8.4:-12227854 | MS.gene036499:CDS |
GTCAAATTATTGCTTGATAA+TGG | 0.274159 | 8.4:-12228330 | MS.gene036499:CDS |
TCATTTGTTGAAGCTGTATC+AGG | 0.289926 | 8.4:-12227797 | MS.gene036499:CDS |
AACACATTCTTCAAGCATTT+AGG | 0.305458 | 8.4:-12228095 | MS.gene036499:CDS |
TTTGGTAAAAGTACCTTGTT+GGG | 0.357862 | 8.4:+12228561 | None:intergenic |
GATTGGGCAAACTTCTTAAG+AGG | 0.387256 | 8.4:+12228466 | None:intergenic |
CAACCTGTTGGAGACTGTTC+AGG | 0.388932 | 8.4:-12228247 | MS.gene036499:CDS |
CTTTGGTAAAAGTACCTTGT+TGG | 0.403823 | 8.4:+12228560 | None:intergenic |
ACCTTACTGTATGTTGTCTT+CGG | 0.415933 | 8.4:-12228067 | MS.gene036499:CDS |
TTGCAGTTCCTTGTATCTAA+AGG | 0.428240 | 8.4:-12227916 | MS.gene036499:CDS |
AAATTCGTAATATCATCAAA+AGG | 0.437298 | 8.4:-12228611 | MS.gene036499:CDS |
AGCGCTTGGGTTGATCAGTT+AGG | 0.440546 | 8.4:-12228021 | MS.gene036499:CDS |
ATAAGTAGGGATGATATGAT+TGG | 0.445105 | 8.4:+12228449 | None:intergenic |
AACTGCAAAACTGCAGCCCT+TGG | 0.446416 | 8.4:+12227931 | None:intergenic |
TTTGGATCTTGTTAATGCTC+CGG | 0.453825 | 8.4:-12227989 | MS.gene036499:CDS |
TTTATTGAGACTCGAGAAAC+GGG | 0.454508 | 8.4:-12227959 | MS.gene036499:CDS |
ATTCCTGAACAGTCTCCAAC+AGG | 0.475079 | 8.4:+12228244 | None:intergenic |
TTGGATCTTGTTAATGCTCC+GGG | 0.475407 | 8.4:-12227988 | MS.gene036499:CDS |
TTCTCAAACCTTTAGATACA+AGG | 0.476085 | 8.4:+12227908 | None:intergenic |
CCTCTCATAAAATGATAAGT+AGG | 0.495753 | 8.4:+12228435 | None:intergenic |
AACTTCTCTGTCATAGCAAA+CGG | 0.496374 | 8.4:+12227862 | None:intergenic |
AAAGTACCTTGTTGGGGTCG+AGG | 0.506736 | 8.4:+12228568 | None:intergenic |
AATTCGTAATATCATCAAAA+GGG | 0.515448 | 8.4:-12228610 | MS.gene036499:CDS |
TTGGATGAACAATATATCCT+AGG | 0.518394 | 8.4:+12228267 | None:intergenic |
TAAGTAGGGATGATATGATT+GGG | 0.531463 | 8.4:+12228450 | None:intergenic |
ATATTGTTCATCCAACCTGT+TGG | 0.532063 | 8.4:-12228259 | MS.gene036499:CDS |
GATATTACGAATTTGAGTGT+TGG | 0.541490 | 8.4:+12228620 | None:intergenic |
ACATTCTTCAAGCATTTAGG+AGG | 0.543592 | 8.4:-12228092 | MS.gene036499:CDS |
TCGAGAAACGGGTTATTCCA+AGG | 0.551680 | 8.4:-12227948 | MS.gene036499:CDS |
AATGAATCTTGCAAATAGCA+TGG | 0.553137 | 8.4:-12227770 | MS.gene036499:CDS |
CTCTCATAAAATGATAAGTA+GGG | 0.556083 | 8.4:+12228436 | None:intergenic |
GTTCAGGAATTGAAGCAACT+AGG | 0.561440 | 8.4:-12228231 | MS.gene036499:CDS |
AGAAGTTACACACTTCATGA+AGG | 0.561506 | 8.4:+12227739 | None:intergenic |
TGATACAGCTTCAACAAATG+AGG | 0.568471 | 8.4:+12227799 | None:intergenic |
CATTGTTGCGTAATTCGCCT+AGG | 0.579851 | 8.4:-12228284 | MS.gene036499:CDS |
AGAAAACTGTGAATGAAACT+AGG | 0.580330 | 8.4:-12228164 | MS.gene036499:CDS |
CTGAACAGTCTCCAACAGGT+TGG | 0.584404 | 8.4:+12228248 | None:intergenic |
GCCGAAGACAACATACAGTA+AGG | 0.592002 | 8.4:+12228066 | None:intergenic |
TTTGAGTGTTGGAGAAGCCA+TGG | 0.596210 | 8.4:+12228631 | None:intergenic |
AGCAAACGGTGCACTTAGTG+AGG | 0.600976 | 8.4:+12227876 | None:intergenic |
AACTGTGAATGAAACTAGGT+GGG | 0.613433 | 8.4:-12228160 | MS.gene036499:CDS |
CGAGAAACGGGTTATTCCAA+GGG | 0.615093 | 8.4:-12227947 | MS.gene036499:CDS |
TTGAGTGTTGGAGAAGCCAT+GGG | 0.633074 | 8.4:+12228632 | None:intergenic |
CTTATGCCTCGACCCCAACA+AGG | 0.635453 | 8.4:-12228574 | MS.gene036499:intron |
TGTAGCAATATTTGAGTGTG+TGG | 0.635496 | 8.4:+12228305 | None:intergenic |
AAACTGTGAATGAAACTAGG+TGG | 0.639268 | 8.4:-12228161 | MS.gene036499:CDS |
ATATCATCAAAAGGGAACCT+CGG | 0.640196 | 8.4:-12228602 | MS.gene036499:CDS |
TTGGTAAAAGTACCTTGTTG+GGG | 0.646951 | 8.4:+12228562 | None:intergenic |
TCGAGGCATAAGAGTAACCG+AGG | 0.694428 | 8.4:+12228585 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAACGATTAATACATTTAA+TGG | + | chr8.4:12227996-12228015 | None:intergenic | 15.0% |
!!! | AAGTTGAAATTTTTAAGAAA+TGG | - | chr8.4:12228251-12228270 | MS.gene036499:CDS | 15.0% |
!!! | AGTTGAAATTTTTAAGAAAT+GGG | - | chr8.4:12228252-12228271 | MS.gene036499:CDS | 15.0% |
!! | AAATTCGTAATATCATCAAA+AGG | - | chr8.4:12227771-12227790 | MS.gene036499:CDS | 20.0% |
!! | AATTCGTAATATCATCAAAA+GGG | - | chr8.4:12227772-12227791 | MS.gene036499:CDS | 20.0% |
!! | GAAAGTAAAAATTGAAACTT+TGG | + | chr8.4:12227842-12227861 | None:intergenic | 20.0% |
!!! | CAAATTTGTGAAATGTTTTA+AGG | - | chr8.4:12228552-12228571 | MS.gene036499:intron | 20.0% |
!!! | GTTGAAATTTTTAAGAAATG+GGG | - | chr8.4:12228253-12228272 | MS.gene036499:CDS | 20.0% |
!!! | TTTCAATTTTTACTTTCCAA+AGG | - | chr8.4:12227845-12227864 | MS.gene036499:CDS | 20.0% |
! | CTCTCATAAAATGATAAGTA+GGG | + | chr8.4:12227949-12227968 | None:intergenic | 25.0% |
! | GTCAAATTATTGCTTGATAA+TGG | - | chr8.4:12228052-12228071 | MS.gene036499:CDS | 25.0% |
!! | CTACTTATCATTTTATGAGA+GGG | - | chr8.4:12227948-12227967 | MS.gene036499:CDS | 25.0% |
!!! | AAATTTTTAAGAAATGGGGT+TGG | - | chr8.4:12228257-12228276 | MS.gene036499:CDS | 25.0% |
!!! | ATTTGTGAAATGTTTTAAGG+AGG | - | chr8.4:12228555-12228574 | MS.gene036499:intron | 25.0% |
AAACTTCTTAAGAGGAATCT+AGG | + | chr8.4:12227911-12227930 | None:intergenic | 30.0% | |
AACACATTCTTCAAGCATTT+AGG | - | chr8.4:12228287-12228306 | MS.gene036499:CDS | 30.0% | |
AACTTCTTAAGAGGAATCTA+GGG | + | chr8.4:12227910-12227929 | None:intergenic | 30.0% | |
AATGAATCTTGCAAATAGCA+TGG | - | chr8.4:12228612-12228631 | MS.gene036499:CDS | 30.0% | |
AGAAAACTGTGAATGAAACT+AGG | - | chr8.4:12228218-12228237 | MS.gene036499:CDS | 30.0% | |
AGTCTCAATAAAAAGATTCC+CGG | + | chr8.4:12228415-12228434 | None:intergenic | 30.0% | |
ATAAGTAGGGATGATATGAT+TGG | + | chr8.4:12227936-12227955 | None:intergenic | 30.0% | |
CCTCTCATAAAATGATAAGT+AGG | + | chr8.4:12227950-12227969 | None:intergenic | 30.0% | |
GATATTACGAATTTGAGTGT+TGG | + | chr8.4:12227765-12227784 | None:intergenic | 30.0% | |
TAAGTAGGGATGATATGATT+GGG | + | chr8.4:12227935-12227954 | None:intergenic | 30.0% | |
TCAGTTAGGTTTGAATTCTT+TGG | - | chr8.4:12228375-12228394 | MS.gene036499:CDS | 30.0% | |
TTCTCAAACCTTTAGATACA+AGG | + | chr8.4:12228477-12228496 | None:intergenic | 30.0% | |
TTGGATGAACAATATATCCT+AGG | + | chr8.4:12228118-12228137 | None:intergenic | 30.0% | |
! | CCTACTTATCATTTTATGAG+AGG | - | chr8.4:12227947-12227966 | MS.gene036499:CDS | 30.0% |
! | TTTTATTGAGACTCGAGAAA+CGG | - | chr8.4:12228422-12228441 | MS.gene036499:CDS | 30.0% |
!! | TTTGGTAAAAGTACCTTGTT+GGG | + | chr8.4:12227824-12227843 | None:intergenic | 30.0% |
AAACTGTGAATGAAACTAGG+TGG | - | chr8.4:12228221-12228240 | MS.gene036499:CDS | 35.0% | |
AACTGTGAATGAAACTAGGT+GGG | - | chr8.4:12228222-12228241 | MS.gene036499:CDS | 35.0% | |
AACTTCTCTGTCATAGCAAA+CGG | + | chr8.4:12228523-12228542 | None:intergenic | 35.0% | |
ACATTCTTCAAGCATTTAGG+AGG | - | chr8.4:12228290-12228309 | MS.gene036499:CDS | 35.0% | |
ACCTTACTGTATGTTGTCTT+CGG | - | chr8.4:12228315-12228334 | MS.gene036499:CDS | 35.0% | |
ATATCATCAAAAGGGAACCT+CGG | - | chr8.4:12227780-12227799 | MS.gene036499:CDS | 35.0% | |
ATATTGTTCATCCAACCTGT+TGG | - | chr8.4:12228123-12228142 | MS.gene036499:CDS | 35.0% | |
TGATACAGCTTCAACAAATG+AGG | + | chr8.4:12228586-12228605 | None:intergenic | 35.0% | |
TGTAGCAATATTTGAGTGTG+TGG | + | chr8.4:12228080-12228099 | None:intergenic | 35.0% | |
TTGCAGTTCCTTGTATCTAA+AGG | - | chr8.4:12228466-12228485 | MS.gene036499:CDS | 35.0% | |
TTTATTGAGACTCGAGAAAC+GGG | - | chr8.4:12228423-12228442 | MS.gene036499:CDS | 35.0% | |
TTTGGATCTTGTTAATGCTC+CGG | - | chr8.4:12228393-12228412 | MS.gene036499:CDS | 35.0% | |
! | TATGACAGAGAAGTTGTTTC+TGG | - | chr8.4:12228528-12228547 | MS.gene036499:intron | 35.0% |
! | TCATTTGTTGAAGCTGTATC+AGG | - | chr8.4:12228585-12228604 | MS.gene036499:CDS | 35.0% |
!! | CTTTGGTAAAAGTACCTTGT+TGG | + | chr8.4:12227825-12227844 | None:intergenic | 35.0% |
!! | TTGGTAAAAGTACCTTGTTG+GGG | + | chr8.4:12227823-12227842 | None:intergenic | 35.0% |
!! | TTTTAAGAAATGGGGTTGGT+CGG | - | chr8.4:12228261-12228280 | MS.gene036499:CDS | 35.0% |
!!! | TTCAACTTTTGCTGTTGCAT+TGG | - | chr8.4:12228189-12228208 | MS.gene036499:CDS | 35.0% |
GATTGGGCAAACTTCTTAAG+AGG | + | chr8.4:12227919-12227938 | None:intergenic | 40.0% | |
GTTCAGGAATTGAAGCAACT+AGG | - | chr8.4:12228151-12228170 | MS.gene036499:CDS | 40.0% | |
TTGGATCTTGTTAATGCTCC+GGG | - | chr8.4:12228394-12228413 | MS.gene036499:CDS | 40.0% | |
!! | ATCAGAAGTAGAAGCACCTT+TGG | + | chr8.4:12227864-12227883 | None:intergenic | 40.0% |
ATTCCTGAACAGTCTCCAAC+AGG | + | chr8.4:12228141-12228160 | None:intergenic | 45.0% | |
CATTGTTGCGTAATTCGCCT+AGG | - | chr8.4:12228098-12228117 | MS.gene036499:CDS | 45.0% | |
GCCGAAGACAACATACAGTA+AGG | + | chr8.4:12228319-12228338 | None:intergenic | 45.0% | |
!! | CGAGAAACGGGTTATTCCAA+GGG | - | chr8.4:12228435-12228454 | MS.gene036499:CDS | 45.0% |
!! | TCGAGAAACGGGTTATTCCA+AGG | - | chr8.4:12228434-12228453 | MS.gene036499:CDS | 45.0% |
AACTGCAAAACTGCAGCCCT+TGG | + | chr8.4:12228454-12228473 | None:intergenic | 50.0% | |
AGCAAACGGTGCACTTAGTG+AGG | + | chr8.4:12228509-12228528 | None:intergenic | 50.0% | |
CAACCTGTTGGAGACTGTTC+AGG | - | chr8.4:12228135-12228154 | MS.gene036499:CDS | 50.0% | |
CTGAACAGTCTCCAACAGGT+TGG | + | chr8.4:12228137-12228156 | None:intergenic | 50.0% | |
TCGAGGCATAAGAGTAACCG+AGG | + | chr8.4:12227800-12227819 | None:intergenic | 50.0% | |
! | AAAGTACCTTGTTGGGGTCG+AGG | + | chr8.4:12227817-12227836 | None:intergenic | 50.0% |
!! | AGCGCTTGGGTTGATCAGTT+AGG | - | chr8.4:12228361-12228380 | MS.gene036499:CDS | 50.0% |
!!! | CGATGCAGTTTTGAGCGCTT+GGG | - | chr8.4:12228348-12228367 | MS.gene036499:CDS | 50.0% |
!!! | TCGATGCAGTTTTGAGCGCT+TGG | - | chr8.4:12228347-12228366 | MS.gene036499:CDS | 50.0% |
CTTATGCCTCGACCCCAACA+AGG | - | chr8.4:12227808-12227827 | MS.gene036499:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 12227753 | 12228651 | 12227753 | ID=MS.gene036499 |
chr8.4 | mRNA | 12227753 | 12228651 | 12227753 | ID=MS.gene036499.t1;Parent=MS.gene036499 |
chr8.4 | exon | 12228575 | 12228651 | 12228575 | ID=MS.gene036499.t1.exon1;Parent=MS.gene036499.t1 |
chr8.4 | CDS | 12228575 | 12228651 | 12228575 | ID=cds.MS.gene036499.t1;Parent=MS.gene036499.t1 |
chr8.4 | exon | 12227753 | 12228491 | 12227753 | ID=MS.gene036499.t1.exon2;Parent=MS.gene036499.t1 |
chr8.4 | CDS | 12227753 | 12228491 | 12227753 | ID=cds.MS.gene036499.t1;Parent=MS.gene036499.t1 |
Gene Sequence |
Protein sequence |