Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036514.t1 | XP_003609635.2 | 96.5 | 1163 | 41 | 0 | 1 | 1163 | 1 | 1163 | 0.00E+00 | 2156.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036514.t1 | Q6A332 | 47.0 | 1148 | 523 | 22 | 48 | 1163 | 39 | 1132 | 1.7e-237 | 824.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036514.t1 | G7JKB2 | 96.5 | 1163 | 41 | 0 | 1 | 1163 | 1 | 1163 | 0.0e+00 | 2156.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene036514.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036514.t1 | MTR_4g119390 | 96.475 | 1163 | 41 | 0 | 1 | 1163 | 1 | 1163 | 0.0 | 2336 |
MS.gene036514.t1 | MTR_4g119390 | 93.656 | 1198 | 41 | 1 | 1 | 1163 | 1 | 1198 | 0.0 | 2318 |
MS.gene036514.t1 | MTR_1g083040 | 43.317 | 1212 | 561 | 34 | 1 | 1163 | 1 | 1135 | 0.0 | 796 |
MS.gene036514.t1 | MTR_1g083040 | 43.568 | 1205 | 555 | 36 | 1 | 1163 | 1 | 1122 | 0.0 | 795 |
MS.gene036514.t1 | MTR_1g083040 | 42.822 | 1212 | 556 | 35 | 1 | 1163 | 1 | 1124 | 0.0 | 776 |
MS.gene036514.t1 | MTR_1g083040 | 43.071 | 1205 | 550 | 37 | 1 | 1163 | 1 | 1111 | 0.0 | 776 |
MS.gene036514.t1 | MTR_1g083040 | 45.756 | 813 | 370 | 22 | 1 | 784 | 1 | 771 | 0.0 | 588 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036514.t1 | AT3G21430 | 46.963 | 1169 | 532 | 23 | 28 | 1163 | 19 | 1132 | 0.0 | 924 |
MS.gene036514.t1 | AT3G21430 | 47.124 | 1165 | 532 | 23 | 28 | 1163 | 19 | 1128 | 0.0 | 923 |
MS.gene036514.t1 | AT3G21430 | 47.124 | 1165 | 532 | 23 | 28 | 1163 | 19 | 1128 | 0.0 | 923 |
MS.gene036514.t1 | AT3G05380 | 37.628 | 978 | 475 | 27 | 1 | 914 | 1 | 907 | 6.25e-156 | 493 |
MS.gene036514.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 884 | 1052 | 1.47e-29 | 128 |
MS.gene036514.t1 | AT3G05380 | 37.628 | 978 | 475 | 27 | 1 | 914 | 1 | 907 | 6.25e-156 | 493 |
MS.gene036514.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 884 | 1052 | 1.47e-29 | 128 |
MS.gene036514.t1 | AT3G05380 | 37.628 | 978 | 475 | 27 | 1 | 914 | 1 | 907 | 6.25e-156 | 493 |
MS.gene036514.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 884 | 1052 | 1.47e-29 | 128 |
MS.gene036514.t1 | AT3G05380 | 37.526 | 978 | 475 | 27 | 1 | 914 | 1 | 906 | 6.56e-156 | 493 |
MS.gene036514.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 883 | 1051 | 1.47e-29 | 128 |
MS.gene036514.t1 | AT3G05380 | 37.025 | 894 | 430 | 28 | 89 | 914 | 1 | 829 | 8.64e-130 | 421 |
MS.gene036514.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 806 | 974 | 1.25e-29 | 128 |
MS.gene036514.t1 | AT5G27610 | 40.878 | 433 | 212 | 11 | 386 | 784 | 288 | 710 | 4.12e-71 | 257 |
MS.gene036514.t1 | AT5G27610 | 47.893 | 261 | 99 | 9 | 1 | 257 | 1 | 228 | 1.23e-53 | 204 |
MS.gene036514.t1 | AT5G27610 | 55.128 | 78 | 35 | 0 | 1086 | 1163 | 893 | 970 | 2.10e-22 | 104 |
Find 249 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAGTGTCAGGGTTTGTTTC+TGG | 0.086747 | 8.1:-8901663 | None:intergenic |
CCGAGTTATCTCCGTATTTC+TGG | 0.088103 | 8.1:-8908330 | None:intergenic |
TTTCACCATATTTAGGTTTC+TGG | 0.112732 | 8.1:-8904964 | None:intergenic |
TGCAAAATCTGTGTCAAAAT+TGG | 0.152697 | 8.1:-8900318 | None:intergenic |
TATGAAGCTTACCGTGAATA+TGG | 0.199391 | 8.1:+8894215 | MS.gene036514:CDS |
CACCTTGCCAAAATGTTTAA+TGG | 0.203085 | 8.1:-8909725 | None:intergenic |
CTAGGGATTTCACCATATTT+AGG | 0.204552 | 8.1:-8904971 | None:intergenic |
TAGCAGCCCATTAAACATTT+TGG | 0.214686 | 8.1:+8909718 | MS.gene036514:CDS |
TTGCCAATAGAATATGAAAT+AGG | 0.224344 | 8.1:-8899733 | None:intergenic |
ACACGCTGCCCAACAATTAA+TGG | 0.227330 | 8.1:-8906325 | None:intergenic |
GGTAGATTCTTTGAACAAAA+TGG | 0.238242 | 8.1:-8911124 | None:intergenic |
TCATGAATCTCCCTTGTCTT+TGG | 0.253815 | 8.1:-8906361 | None:intergenic |
CAAGCATTTGAATGACTTAA+AGG | 0.264328 | 8.1:+8900247 | MS.gene036514:CDS |
TGGTACACAGCGACCTTTAA+TGG | 0.271033 | 8.1:-8907290 | None:intergenic |
AAACCTTGATGAGTCTAAAA+TGG | 0.290911 | 8.1:+8903212 | MS.gene036514:CDS |
CTGGTATGCTCCCTCTGCTT+TGG | 0.301751 | 8.1:-8903301 | None:intergenic |
GGCCTCATGCTGTTCGAAAA+AGG | 0.303491 | 8.1:+8899698 | MS.gene036514:CDS |
TTCTGTATCTCACCATATAT+TGG | 0.303861 | 8.1:-8911145 | None:intergenic |
GTGATATCATACCAGGAATT+AGG | 0.306104 | 8.1:+8899677 | MS.gene036514:intron |
GGCCATAGATTCTATTACTT+TGG | 0.309553 | 8.1:+8909673 | MS.gene036514:CDS |
GTCCCTATTTCATATTCTAT+TGG | 0.311459 | 8.1:+8899730 | MS.gene036514:CDS |
TCTACTGCTTTGTTGTCATT+TGG | 0.311783 | 8.1:-8897388 | None:intergenic |
AGCTACACTGCTCATGATTC+AGG | 0.314415 | 8.1:+8909829 | MS.gene036514:CDS |
GGTGATAATGCAGATTATTC+TGG | 0.316155 | 8.1:+8900119 | MS.gene036514:CDS |
AGCCAAAGTAATAGAATCTA+TGG | 0.320570 | 8.1:-8909675 | None:intergenic |
GACAGACCATTATAGTATTA+TGG | 0.321669 | 8.1:+8896365 | MS.gene036514:CDS |
TGGTATGCTCCCTCTGCTTT+GGG | 0.323032 | 8.1:-8903300 | None:intergenic |
CAGTTTGACCAGCATGAACT+TGG | 0.326153 | 8.1:+8906424 | MS.gene036514:CDS |
GAAGCCCATTGCAAATTTAG+AGG | 0.326174 | 8.1:+8908607 | MS.gene036514:CDS |
ATCAAAAGAAGCTGATATAT+TGG | 0.334194 | 8.1:+8908091 | MS.gene036514:CDS |
GGAAGGCATACCTGCTGATT+TGG | 0.335570 | 8.1:+8906297 | MS.gene036514:CDS |
TCTTGTTGTATCATTGGTTT+TGG | 0.337366 | 8.1:-8905122 | None:intergenic |
CGGAAACAGTTCAAGAAAAT+CGG | 0.338674 | 8.1:+8903245 | MS.gene036514:CDS |
GAGGGCACTGCTTCTGTGGT+TGG | 0.350015 | 8.1:+8896327 | MS.gene036514:CDS |
TTGCTCTTGCAGTACGTAAT+AGG | 0.355212 | 8.1:+8894480 | MS.gene036514:CDS |
CATTGTGCATAAGCTCTCTA+AGG | 0.355553 | 8.1:-8907204 | None:intergenic |
GGTAGTTCTGAGTTGAGTTT+AGG | 0.359133 | 8.1:+8900086 | MS.gene036514:CDS |
AGCTTGAACAACCATGGTTC+GGG | 0.363741 | 8.1:-8908735 | None:intergenic |
CCACTCAATACGAGTCAATC+TGG | 0.366185 | 8.1:-8905459 | None:intergenic |
TCATTCCAGAAACCTAAATA+TGG | 0.366857 | 8.1:+8904959 | MS.gene036514:CDS |
GAGAAGTCAGATGCCATTAA+AGG | 0.366873 | 8.1:+8907277 | MS.gene036514:CDS |
GACTTTGAGATATAGATTCT+TGG | 0.367314 | 8.1:-8908676 | None:intergenic |
TCAAAGAATCTACCAATATA+TGG | 0.367899 | 8.1:+8911133 | MS.gene036514:CDS |
TTCTTACCATAATACTATAA+TGG | 0.367930 | 8.1:-8896371 | None:intergenic |
TGCTATGCAGAAGAGAAAAT+TGG | 0.368184 | 8.1:+8894145 | MS.gene036514:intron |
AGTTGTATCAACCATTTGTT+TGG | 0.371204 | 8.1:-8899797 | None:intergenic |
TCATTCTAGCAGGAGTAATA+TGG | 0.372331 | 8.1:-8907174 | None:intergenic |
AGGGCACTGCTTCTGTGGTT+GGG | 0.372492 | 8.1:+8896328 | MS.gene036514:CDS |
GTGAAGAAGTCCACGGTTAA+AGG | 0.375088 | 8.1:+8904912 | MS.gene036514:CDS |
TTGTTGAAGAAAAGGCATTC+TGG | 0.378476 | 8.1:+8897472 | MS.gene036514:CDS |
ACCTTGCCAAAATGTTTAAT+GGG | 0.382506 | 8.1:-8909724 | None:intergenic |
AGAAAATTGGCCGATATGTT+AGG | 0.389878 | 8.1:+8894158 | MS.gene036514:CDS |
TTTAGAGGATCCCGGTGGTC+AGG | 0.392468 | 8.1:+8908622 | MS.gene036514:CDS |
TGCCAATAGAATATGAAATA+GGG | 0.392930 | 8.1:-8899732 | None:intergenic |
GTATGATCTTGTTGTATCAT+TGG | 0.395885 | 8.1:-8905128 | None:intergenic |
AGCCTTCTGCCTATTCTTGC+CGG | 0.398604 | 8.1:-8893836 | None:intergenic |
TATCATAAGAAATCAGATAT+TGG | 0.401370 | 8.1:+8911177 | MS.gene036514:CDS |
TCCAATCTTTCCCATATTCA+CGG | 0.405262 | 8.1:-8894226 | None:intergenic |
TGTGTCAAAATTGGATTTGA+AGG | 0.405494 | 8.1:-8900309 | None:intergenic |
CATTATGCTGAAGTTCTTGC+TGG | 0.413232 | 8.1:+8906268 | MS.gene036514:CDS |
AATACCTGTGCAACATCAGC+TGG | 0.413425 | 8.1:-8911076 | None:intergenic |
GCCTGTCATTGTTGAAGAAA+AGG | 0.415958 | 8.1:+8897464 | MS.gene036514:CDS |
CATGTTAAATCAGGAATAGT+TGG | 0.422787 | 8.1:+8900032 | MS.gene036514:CDS |
CTCTGTTTATTTGACCGACT+TGG | 0.423203 | 8.1:-8905073 | None:intergenic |
GAGATAATATTGGAAGAGTA+AGG | 0.427648 | 8.1:+8900165 | MS.gene036514:CDS |
AATGACAACAAAGCAGTAGA+TGG | 0.428914 | 8.1:+8897391 | MS.gene036514:CDS |
CAGCAAATACCGGCAAGAAT+AGG | 0.429426 | 8.1:+8893827 | MS.gene036514:CDS |
CTACTCTTATGCAGTTCTCT+TGG | 0.430013 | 8.1:+8906166 | MS.gene036514:intron |
AAGCCTTGTACACTAAGAAC+AGG | 0.430030 | 8.1:+8894519 | MS.gene036514:CDS |
CGGAACAGTAGAGATAATAT+TGG | 0.430192 | 8.1:+8900155 | MS.gene036514:CDS |
ATAAATGCCTTACCAGTGTC+AGG | 0.432931 | 8.1:-8901675 | None:intergenic |
TGGCCCAGCCATTAATTGTT+GGG | 0.439743 | 8.1:+8906317 | MS.gene036514:CDS |
CTTCTAGGAACTTGTGTTGT+CGG | 0.445079 | 8.1:+8908273 | MS.gene036514:intron |
TAGCTTGAACAACCATGGTT+CGG | 0.445922 | 8.1:-8908736 | None:intergenic |
ATAAATCCATCGCATCATAC+TGG | 0.446266 | 8.1:+8905183 | MS.gene036514:CDS |
AATCTAGAAGTGTAAATAAG+AGG | 0.448249 | 8.1:+8893761 | MS.gene036514:CDS |
AAATCACAAGCAAAAGTTGC+GGG | 0.448716 | 8.1:+8908005 | MS.gene036514:CDS |
CATACTGGTTCTCATTTAAG+TGG | 0.450622 | 8.1:+8903505 | MS.gene036514:CDS |
TTGGCCCAGCCATTAATTGT+TGG | 0.451045 | 8.1:+8906316 | MS.gene036514:CDS |
TATTTGAAGACATATTTCCT+AGG | 0.454212 | 8.1:-8904989 | None:intergenic |
GCCTCCAGTGGAACCGATGA+TGG | 0.455246 | 8.1:+8900272 | MS.gene036514:CDS |
AACATAAACTTAATCAGTAC+CGG | 0.455370 | 8.1:+8906230 | MS.gene036514:CDS |
TGAACAAAATGGCTGCAAAC+TGG | 0.455570 | 8.1:-8911113 | None:intergenic |
GAATAGTACGGAACGTCATA+AGG | 0.457036 | 8.1:+8905208 | MS.gene036514:CDS |
TACCCTGTTCTTAGTGTACA+AGG | 0.457694 | 8.1:-8894522 | None:intergenic |
ATTAACTGAAGCAAATGAAC+AGG | 0.462633 | 8.1:+8908402 | MS.gene036514:CDS |
GAACTGAAGCACATGAATGA+TGG | 0.462918 | 8.1:+8908295 | MS.gene036514:CDS |
AAGAGTAAGGAATCAGGAAA+AGG | 0.465011 | 8.1:+8900178 | MS.gene036514:CDS |
TATTGGAAGAGTAAGGAATC+AGG | 0.465078 | 8.1:+8900172 | MS.gene036514:CDS |
TTAGAGAGCTTATGCACAAT+GGG | 0.466746 | 8.1:+8907206 | MS.gene036514:CDS |
AATGTGATCTGACAGATTCC+CGG | 0.468252 | 8.1:-8906249 | None:intergenic |
AAGTGTGAGGTCTTCTTACA+AGG | 0.469533 | 8.1:+8900349 | MS.gene036514:CDS |
CTGTTGACCATTGTAGATAC+CGG | 0.470249 | 8.1:+8906398 | MS.gene036514:CDS |
TATCGTTGACAAAGCAGAAA+GGG | 0.470257 | 8.1:+8905010 | MS.gene036514:CDS |
ATGAAGCTTACCGTGAATAT+GGG | 0.470402 | 8.1:+8894216 | MS.gene036514:CDS |
ACCGTGAATATGGGAAAGAT+TGG | 0.471794 | 8.1:+8894225 | MS.gene036514:CDS |
ATCTATGGCCAGAAAATTTG+TGG | 0.473141 | 8.1:-8909660 | None:intergenic |
AGAGTAAGGAATCAGGAAAA+GGG | 0.476289 | 8.1:+8900179 | MS.gene036514:CDS |
CATTCCGTTGCATCAGATGA+TGG | 0.476385 | 8.1:+8897439 | MS.gene036514:CDS |
AATTGGATTTGAAGGAACTC+TGG | 0.478314 | 8.1:-8900301 | None:intergenic |
TCCAGAGGGCACTGCTTCTG+TGG | 0.478808 | 8.1:+8896323 | MS.gene036514:CDS |
ACCACAGAAGCAGTGCCCTC+TGG | 0.479339 | 8.1:-8896324 | None:intergenic |
ACGTAATAGGACCATGGAAA+TGG | 0.480725 | 8.1:+8894493 | MS.gene036514:CDS |
CCATTGTGGTCCTAACATAT+CGG | 0.481285 | 8.1:-8894168 | None:intergenic |
GTTGTGGCAAGCTGAGCAAT+TGG | 0.482009 | 8.1:-8908654 | None:intergenic |
TTTCCATCTTTCTTCTAGGT+CGG | 0.482426 | 8.1:-8905097 | None:intergenic |
TTGAGTGGGGAGTCATTAGA+AGG | 0.484128 | 8.1:+8905474 | MS.gene036514:CDS |
ATTCTGGAAAATTAATTCAT+CGG | 0.486527 | 8.1:+8900135 | MS.gene036514:CDS |
CAATGAGATATGAGTTCTGA+GGG | 0.491306 | 8.1:-8909803 | None:intergenic |
TTCTATTGGCAAAGATAATG+AGG | 0.491767 | 8.1:+8899744 | MS.gene036514:CDS |
TCCTGCTTACAGCACTAAGC+TGG | 0.492772 | 8.1:-8903320 | None:intergenic |
AGGTTCTCATTCATTCTAGC+AGG | 0.493474 | 8.1:-8907184 | None:intergenic |
CGCAAATCTGACATGGATGA+AGG | 0.495520 | 8.1:+8900065 | MS.gene036514:CDS |
ATCAGCAGGTATGCCTTCCT+TGG | 0.495822 | 8.1:-8906293 | None:intergenic |
GGATCCTCTAAATTTGCAAT+GGG | 0.496083 | 8.1:-8908611 | None:intergenic |
CCATCACCCAATCTGAAAAG+TGG | 0.497047 | 8.1:+8899913 | MS.gene036514:CDS |
ATGGCATCTGACTTCTCACT+TGG | 0.499265 | 8.1:-8907271 | None:intergenic |
AGTTTGACCAGCATGAACTT+GGG | 0.504601 | 8.1:+8906425 | MS.gene036514:CDS |
AACTGAAGCACATGAATGAT+GGG | 0.505603 | 8.1:+8908296 | MS.gene036514:CDS |
GACTCGTGCTCTAGAAAAGA+AGG | 0.506028 | 8.1:+8908127 | MS.gene036514:CDS |
GTTAGGACCACAATGGAGTA+AGG | 0.506745 | 8.1:+8894175 | MS.gene036514:CDS |
CTAAATATGGTGAAATCCCT+AGG | 0.507305 | 8.1:+8904972 | MS.gene036514:CDS |
GATAAAGATGCAGCAAATAC+CGG | 0.508252 | 8.1:+8893817 | MS.gene036514:CDS |
GCTGCCCAACAATTAATGGC+TGG | 0.508774 | 8.1:-8906321 | None:intergenic |
AAGTGGTTCCCAGAAAATCA+AGG | 0.509560 | 8.1:+8903522 | MS.gene036514:CDS |
AATGGCTGGGCCAAATCAGC+AGG | 0.510693 | 8.1:-8906307 | None:intergenic |
GGAAACAGTTCAAGAAAATC+GGG | 0.510715 | 8.1:+8903246 | MS.gene036514:CDS |
GAGATATAGATTCTTGGTTG+TGG | 0.512907 | 8.1:-8908670 | None:intergenic |
GCGGGCAGTGAGATTTGTAA+TGG | 0.514341 | 8.1:+8908023 | MS.gene036514:CDS |
TTAAGTTCATCATCTTGTAC+AGG | 0.517590 | 8.1:-8909749 | None:intergenic |
AATGAGAACTTGATGCTGAT+TGG | 0.518355 | 8.1:-8908046 | None:intergenic |
TTTCAGAAAGACAGAAAGCA+AGG | 0.519639 | 8.1:+8909568 | MS.gene036514:CDS |
CTGCCCAACAATTAATGGCT+GGG | 0.521000 | 8.1:-8906320 | None:intergenic |
TCCATCATCGGTTCCACTGG+AGG | 0.521031 | 8.1:-8900273 | None:intergenic |
TCTAAAATGGAAACAGATAA+CGG | 0.522858 | 8.1:+8903225 | MS.gene036514:CDS |
ACCAGCTTAGTGCTGTAAGC+AGG | 0.523976 | 8.1:+8903319 | MS.gene036514:CDS |
CAATCTGAAAAGTGGGAAGA+AGG | 0.524576 | 8.1:+8899921 | MS.gene036514:CDS |
CAGAATGATGAAACACATAC+TGG | 0.524927 | 8.1:+8903490 | MS.gene036514:intron |
GGCGATGGTGCACCTCTGAA+TGG | 0.528930 | 8.1:+8905354 | MS.gene036514:CDS |
AATTGCTCTGAAAATCTTCG+CGG | 0.528937 | 8.1:-8906193 | None:intergenic |
ATACTTAGAACATGTTGGAC+TGG | 0.530255 | 8.1:+8905427 | MS.gene036514:CDS |
AGGCCGACCTAGAAGAAAGA+TGG | 0.530402 | 8.1:+8905094 | MS.gene036514:CDS |
TGGGGACAATATTGTGTGCT+CGG | 0.531755 | 8.1:-8907251 | None:intergenic |
TGATTGGAGTCGCTCAAGAA+AGG | 0.533822 | 8.1:-8908072 | None:intergenic |
GTACTGCTTACATGCATAGC+AGG | 0.536620 | 8.1:-8907313 | None:intergenic |
CAGATTGACTCGTATTGAGT+GGG | 0.537564 | 8.1:+8905460 | MS.gene036514:CDS |
ATAGTGCTATTGATTATCCA+TGG | 0.540206 | 8.1:+8905381 | MS.gene036514:CDS |
TTAGAGGATCCCGGTGGTCA+GGG | 0.540296 | 8.1:+8908623 | MS.gene036514:CDS |
ATTTGAAGACATATTTCCTA+GGG | 0.540728 | 8.1:-8904988 | None:intergenic |
TTGAGTTTAGGAAGTACAGA+AGG | 0.542444 | 8.1:+8900098 | MS.gene036514:CDS |
GTTTGACCAGCATGAACTTG+GGG | 0.546671 | 8.1:+8906426 | MS.gene036514:CDS |
CTTCACATCAAACGCGGCGA+TGG | 0.547360 | 8.1:+8905339 | MS.gene036514:CDS |
CACTCAATACGAGTCAATCT+GGG | 0.548436 | 8.1:-8905458 | None:intergenic |
CATGGTTGTTCAAGCTACTC+AGG | 0.549504 | 8.1:+8908742 | MS.gene036514:CDS |
GTATCAGAAAGCCAGAAATA+CGG | 0.550244 | 8.1:+8908319 | MS.gene036514:CDS |
TAGGCAGGACTCCAAACAAA+TGG | 0.551437 | 8.1:+8899786 | MS.gene036514:CDS |
AGAATATGAAATAGGGACAC+GGG | 0.551820 | 8.1:-8899725 | None:intergenic |
GTTCTTGCTGGTACCAAGGA+AGG | 0.552113 | 8.1:+8906280 | MS.gene036514:CDS |
ATACCTGTGCAACATCAGCT+GGG | 0.552409 | 8.1:-8911075 | None:intergenic |
CAAGGCTTCTACCATTTCCA+TGG | 0.555139 | 8.1:-8894504 | None:intergenic |
GGGATCCTCTAAATTTGCAA+TGG | 0.556861 | 8.1:-8908612 | None:intergenic |
AAACAAAATGCAGAAGTGTA+CGG | 0.559214 | 8.1:+8911039 | MS.gene036514:intron |
CCAGAAATACGGAGATAACT+CGG | 0.563831 | 8.1:+8908330 | MS.gene036514:CDS |
AACTCTCTCTTTGAAAACCA+TGG | 0.566023 | 8.1:-8905398 | None:intergenic |
GTAGAATACTTAGAACATGT+TGG | 0.571317 | 8.1:+8905422 | MS.gene036514:CDS |
CTTAGAGAGCTTATGCACAA+TGG | 0.573435 | 8.1:+8907205 | MS.gene036514:CDS |
TGGTGAGATACAGAAATGCA+TGG | 0.576778 | 8.1:+8911153 | MS.gene036514:CDS |
GACTTAAAGGAGGCCTCCAG+TGG | 0.577399 | 8.1:+8900260 | MS.gene036514:CDS |
TGAAGGAGTCTGAGCTAGGT+AGG | 0.577749 | 8.1:-8911208 | None:intergenic |
TGACCGCTTGCCTTTAACCG+TGG | 0.577890 | 8.1:-8904922 | None:intergenic |
TCATTTGTGCAGTTCAGTGA+AGG | 0.577897 | 8.1:+8903189 | MS.gene036514:CDS |
AAATTCACCTTCTGAATACC+AGG | 0.578589 | 8.1:-8893862 | None:intergenic |
CATCACCCAATCTGAAAAGT+GGG | 0.578815 | 8.1:+8899914 | MS.gene036514:CDS |
ATTGCAAATTTAGAGGATCC+CGG | 0.580743 | 8.1:+8908614 | MS.gene036514:CDS |
TAGAGTCATCGACTGAAAGC+CGG | 0.581077 | 8.1:-8909628 | None:intergenic |
GGAAGAGCTACCCTGACCAC+CGG | 0.582805 | 8.1:-8908633 | None:intergenic |
CATGCTGGTCAAACTGAACC+CGG | 0.582887 | 8.1:-8906417 | None:intergenic |
TGGCATCTGACTTCTCACTT+GGG | 0.583323 | 8.1:-8907270 | None:intergenic |
CCAGATTGACTCGTATTGAG+TGG | 0.583650 | 8.1:+8905459 | MS.gene036514:CDS |
AAGACAAGGGAGATTCATGA+TGG | 0.583960 | 8.1:+8906364 | MS.gene036514:CDS |
TGAAGTTCTTGCTGGTACCA+AGG | 0.587865 | 8.1:+8906276 | MS.gene036514:CDS |
ACAATGAGATATGAGTTCTG+AGG | 0.588292 | 8.1:-8909804 | None:intergenic |
TACTTAGAACATGTTGGACT+GGG | 0.589292 | 8.1:+8905428 | MS.gene036514:CDS |
TTGTCATTTGGCTTTCCCCG+TGG | 0.590049 | 8.1:-8897376 | None:intergenic |
GGCATACTTGTCTCTTCCAG+AGG | 0.594396 | 8.1:+8896308 | MS.gene036514:intron |
AATAGGCAGAAGGCTAGTCC+TGG | 0.595746 | 8.1:+8893844 | MS.gene036514:CDS |
ATATCGTTGACAAAGCAGAA+AGG | 0.598224 | 8.1:+8905009 | MS.gene036514:CDS |
ATTCCTCCAGTATGATGCGA+TGG | 0.600268 | 8.1:-8905189 | None:intergenic |
ATGGTGTCTTATCAGAGACA+TGG | 0.600547 | 8.1:-8907155 | None:intergenic |
TGTTGACCATTGTAGATACC+GGG | 0.601453 | 8.1:+8906399 | MS.gene036514:CDS |
GGCTAGTCCTGGTATTCAGA+AGG | 0.601808 | 8.1:+8893855 | MS.gene036514:CDS |
AAGCAAGGTTGAAAGAGTTG+AGG | 0.603856 | 8.1:+8909583 | MS.gene036514:CDS |
TCATCTGATGCAACGGAATG+TGG | 0.605010 | 8.1:-8897436 | None:intergenic |
GCAACCATCATCTGATGCAA+CGG | 0.606972 | 8.1:-8897443 | None:intergenic |
ATCATACTGGAGGAATAGTA+CGG | 0.608135 | 8.1:+8905196 | MS.gene036514:CDS |
TTGCTATTCATCCAAAGACA+AGG | 0.608201 | 8.1:+8906350 | MS.gene036514:CDS |
GAAGAGCTACCCTGACCACC+GGG | 0.608282 | 8.1:-8908632 | None:intergenic |
TGCTATTCATCCAAAGACAA+GGG | 0.608809 | 8.1:+8906351 | MS.gene036514:CDS |
CAGTTCAAGAAAATCGGGCA+AGG | 0.610014 | 8.1:+8903251 | MS.gene036514:CDS |
ATTCAACCCCAAGTTCATGC+TGG | 0.612807 | 8.1:-8906432 | None:intergenic |
CCAGAAACAAACCCTGACAC+TGG | 0.613482 | 8.1:+8901663 | MS.gene036514:CDS |
TACCTGTGCAACATCAGCTG+GGG | 0.616593 | 8.1:-8911074 | None:intergenic |
AATTGCATTAGCATTATCAG+AGG | 0.618027 | 8.1:+8899834 | MS.gene036514:CDS |
TAGAATATGAAATAGGGACA+CGG | 0.618389 | 8.1:-8899726 | None:intergenic |
GGCATCTGACTTCTCACTTG+GGG | 0.618633 | 8.1:-8907269 | None:intergenic |
CAAATCACAAGCAAAAGTTG+CGG | 0.619381 | 8.1:+8908004 | MS.gene036514:CDS |
TCTATTGGCAAAGATAATGA+GGG | 0.622126 | 8.1:+8899745 | MS.gene036514:CDS |
TGGTGTCTTATCAGAGACAT+GGG | 0.624605 | 8.1:-8907154 | None:intergenic |
TACCGGCAAGAATAGGCAGA+AGG | 0.627607 | 8.1:+8893834 | MS.gene036514:CDS |
GGTGAGATACAGAAATGCAT+GGG | 0.628850 | 8.1:+8911154 | MS.gene036514:CDS |
ACTTGGGGTTGAATTTGTCA+TGG | 0.632591 | 8.1:+8906441 | MS.gene036514:CDS |
TAAATGCCTTACCAGTGTCA+GGG | 0.634335 | 8.1:-8901674 | None:intergenic |
ATATGGGAAAGATTGGAAGA+AGG | 0.634909 | 8.1:+8894232 | MS.gene036514:CDS |
AGATACTGCTCCCAAAGCAG+AGG | 0.637946 | 8.1:+8903290 | MS.gene036514:CDS |
TGGCTGCAAACTGGTGACAG+CGG | 0.639746 | 8.1:-8911104 | None:intergenic |
GATACTGCTCCCAAAGCAGA+GGG | 0.640638 | 8.1:+8903291 | MS.gene036514:CDS |
TACATCGTAGGTTACTGATG+AGG | 0.643727 | 8.1:+8904890 | MS.gene036514:intron |
ATCGTTGACAAAGCAGAAAG+GGG | 0.645016 | 8.1:+8905011 | MS.gene036514:CDS |
TCAGAGGCTTCACAGAGAGG+TGG | 0.645463 | 8.1:+8899850 | MS.gene036514:CDS |
CTGAGTAGCTTGAACAACCA+TGG | 0.645469 | 8.1:-8908741 | None:intergenic |
TAGAAGAAAAGCCCGAACCA+TGG | 0.646018 | 8.1:+8908724 | MS.gene036514:CDS |
AATCCATCGCATCATACTGG+AGG | 0.648435 | 8.1:+8905186 | MS.gene036514:CDS |
ACATAAACTTAATCAGTACC+GGG | 0.650723 | 8.1:+8906231 | MS.gene036514:CDS |
ACTGAACCCGGTATCTACAA+TGG | 0.651577 | 8.1:-8906405 | None:intergenic |
ACCTGTGCAACATCAGCTGG+GGG | 0.653849 | 8.1:-8911073 | None:intergenic |
TGCAGTACGTAATAGGACCA+TGG | 0.653882 | 8.1:+8894487 | MS.gene036514:CDS |
AGTGTGAGGTCTTCTTACAA+GGG | 0.653978 | 8.1:+8900350 | MS.gene036514:CDS |
GCATTTGAATGACTTAAAGG+AGG | 0.659228 | 8.1:+8900250 | MS.gene036514:CDS |
TGGCAGGGAGGAAGTGACAG+TGG | 0.659370 | 8.1:+8897304 | MS.gene036514:intron |
GAAGTTTCGCAAATCTGACA+TGG | 0.660309 | 8.1:+8900058 | MS.gene036514:CDS |
GAGGTTCTCTAATATTCGTG+AGG | 0.661488 | 8.1:+8893780 | MS.gene036514:CDS |
AGTCCACGGTTAAAGGCAAG+CGG | 0.668120 | 8.1:+8904919 | MS.gene036514:CDS |
GCATACTTGTCTCTTCCAGA+GGG | 0.673500 | 8.1:+8896309 | MS.gene036514:CDS |
AGCACTATAAAACCATTCAG+AGG | 0.676314 | 8.1:-8905366 | None:intergenic |
TTATCAGAGGCTTCACAGAG+AGG | 0.676499 | 8.1:+8899847 | MS.gene036514:CDS |
AGCCTTGTACACTAAGAACA+GGG | 0.682265 | 8.1:+8894520 | MS.gene036514:CDS |
CCGATATGTTAGGACCACAA+TGG | 0.682677 | 8.1:+8894168 | MS.gene036514:CDS |
AGCTCCGCCTTACTCCATTG+TGG | 0.688593 | 8.1:-8894182 | None:intergenic |
CTGCTTACATGCATAGCAGG+TGG | 0.693143 | 8.1:-8907310 | None:intergenic |
TGATGAGGTGAAGAAGTCCA+CGG | 0.695386 | 8.1:+8904905 | MS.gene036514:CDS |
GTCTGTCTTCACATCAAACG+CGG | 0.697708 | 8.1:+8905333 | MS.gene036514:CDS |
AGATTGACTCGTATTGAGTG+GGG | 0.698291 | 8.1:+8905461 | MS.gene036514:CDS |
AGGACCACAATGGAGTAAGG+CGG | 0.703268 | 8.1:+8894178 | MS.gene036514:CDS |
ACTGAAGCACATGAATGATG+GGG | 0.703661 | 8.1:+8908297 | MS.gene036514:CDS |
GGGCTTCAATGACAAAACTG+AGG | 0.705815 | 8.1:-8908591 | None:intergenic |
GAATATGAAATAGGGACACG+GGG | 0.712256 | 8.1:-8899724 | None:intergenic |
CAAGTCGGTCAAATAAACAG+AGG | 0.727061 | 8.1:+8905074 | MS.gene036514:CDS |
AATGAGATATGAGTTCTGAG+GGG | 0.770793 | 8.1:-8909802 | None:intergenic |
GCAAATTTAGAGGATCCCGG+TGG | 0.773825 | 8.1:+8908617 | MS.gene036514:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 8893745 | 8911216 | 8893745 | ID=MS.gene036514 |
chr8.1 | mRNA | 8893745 | 8911216 | 8893745 | ID=MS.gene036514.t1;Parent=MS.gene036514 |
chr8.1 | exon | 8893745 | 8893876 | 8893745 | ID=MS.gene036514.t1.exon1;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8893745 | 8893876 | 8893745 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8894155 | 8894253 | 8894155 | ID=MS.gene036514.t1.exon2;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8894155 | 8894253 | 8894155 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8894479 | 8894541 | 8894479 | ID=MS.gene036514.t1.exon3;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8894479 | 8894541 | 8894479 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8896309 | 8896386 | 8896309 | ID=MS.gene036514.t1.exon4;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8896309 | 8896386 | 8896309 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8897310 | 8897493 | 8897310 | ID=MS.gene036514.t1.exon5;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8897310 | 8897493 | 8897310 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8899692 | 8899942 | 8899692 | ID=MS.gene036514.t1.exon6;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8899692 | 8899942 | 8899692 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8900032 | 8900410 | 8900032 | ID=MS.gene036514.t1.exon7;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8900032 | 8900410 | 8900032 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8901607 | 8901684 | 8901607 | ID=MS.gene036514.t1.exon8;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8901607 | 8901684 | 8901607 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8903187 | 8903371 | 8903187 | ID=MS.gene036514.t1.exon9;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8903187 | 8903371 | 8903187 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8903493 | 8903543 | 8903493 | ID=MS.gene036514.t1.exon10;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8903493 | 8903543 | 8903493 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8904900 | 8905229 | 8904900 | ID=MS.gene036514.t1.exon11;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8904900 | 8905229 | 8904900 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8905317 | 8905495 | 8905317 | ID=MS.gene036514.t1.exon12;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8905317 | 8905495 | 8905317 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8906180 | 8906462 | 8906180 | ID=MS.gene036514.t1.exon13;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8906180 | 8906462 | 8906180 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8907115 | 8907324 | 8907115 | ID=MS.gene036514.t1.exon14;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8907115 | 8907324 | 8907115 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8907987 | 8908148 | 8907987 | ID=MS.gene036514.t1.exon15;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8907987 | 8908148 | 8907987 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8908280 | 8908423 | 8908280 | ID=MS.gene036514.t1.exon16;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8908280 | 8908423 | 8908280 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8908539 | 8908763 | 8908539 | ID=MS.gene036514.t1.exon17;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8908539 | 8908763 | 8908539 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8909557 | 8909850 | 8909557 | ID=MS.gene036514.t1.exon18;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8909557 | 8909850 | 8909557 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
chr8.1 | exon | 8911052 | 8911216 | 8911052 | ID=MS.gene036514.t1.exon19;Parent=MS.gene036514.t1 |
chr8.1 | CDS | 8911052 | 8911216 | 8911052 | ID=cds.MS.gene036514.t1;Parent=MS.gene036514.t1 |
Gene Sequence |
Protein sequence |