AlfalfaGEDB | MS.gene036533

M. sativa cultivar XinJiangDaYe / MS.gene036533

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036533.t1	XP_003609586.1	91.8	170	14	0	1	170	12	181	1.30E-73	285.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036533.t1	G7JJ33	91.8	170	14	0	1	170	12	181	9.4e-74	285.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene036533.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036533.t1	MTR_4g118830	91.765	170	14	0	1	170	12	181	1.56e-109	310
MS.gene036533.t1	MTR_4g118430	45.946	111	41	3	66	170	1	98	2.32e-21	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 33 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACAGTAATCAAACC+AGG	0.647796	8.4:+12676580	None:intergenic
AAATCAAAGAAACCTGTTGA+AGG	0.526426	8.4:-12676709	MS.gene036533:CDS
AATCAAAGAAACCTGTTGAA+GGG	0.548949	8.4:-12676708	MS.gene036533:CDS
AATTTCTCTGTTACGGTTAC+TGG	0.183266	8.4:-12676646	MS.gene036533:CDS
AGAGAAGAAGAAAATGTTGG+AGG	0.534106	8.4:-12676746	MS.gene036533:CDS
AGTAACCGTAACAGAGAAAT+TGG	0.195649	8.4:+12676648	None:intergenic
ATCAAAGAAACCTGTTGAAG+GGG	0.470795	8.4:-12676707	MS.gene036533:CDS
ATCACTGCTTTGGTTCAAAA+TGG	0.315294	8.4:-12676481	MS.gene036533:CDS
ATTGAATCTGTGGCTAAACC+TGG	0.515198	8.4:-12676598	MS.gene036533:CDS
CAAGCAATGTGGCTTTCTTT+GGG	0.307847	8.4:-12676621	MS.gene036533:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCACAGTAATCAAACC+AGG	+	chr8.4:12676934-12676953	None:intergenic	30.0%
AAATCAAAGAAACCTGTTGA+AGG	-	chr8.4:12676802-12676821	MS.gene036533:CDS	30.0%
AATATTTGATCGACCCATTA+TGG	-	chr8.4:12676653-12676672	MS.gene036533:CDS	30.0%
AATCAAAGAAACCTGTTGAA+GGG	-	chr8.4:12676803-12676822	MS.gene036533:intron	30.0%
AGGAATGATGTTAGTTACAT+TGG	+	chr8.4:12676565-12676584	None:intergenic	30.0%
GAATGATGTTAGTTACATTG+GGG	+	chr8.4:12676563-12676582	None:intergenic	30.0%
GGAATGATGTTAGTTACATT+GGG	+	chr8.4:12676564-12676583	None:intergenic	30.0%
TGAAGAGAAGAAGAAAATGT+TGG	-	chr8.4:12676762-12676781	MS.gene036533:CDS	30.0%
AAATTAAAACCCCCTTCAAC+AGG	+	chr8.4:12676817-12676836	None:intergenic	35.0%
AATTTCTCTGTTACGGTTAC+TGG	-	chr8.4:12676865-12676884	MS.gene036533:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	12676438	12677095	12676438	ID=MS.gene036533
chr8.4	mRNA	12676438	12677095	12676438	ID=MS.gene036533.t1;Parent=MS.gene036533
chr8.4	exon	12676967	12677095	12676967	ID=MS.gene036533.t1.exon1;Parent=MS.gene036533.t1
chr8.4	CDS	12676967	12677095	12676967	ID=cds.MS.gene036533.t1;Parent=MS.gene036533.t1
chr8.4	exon	12676438	12676821	12676438	ID=MS.gene036533.t1.exon2;Parent=MS.gene036533.t1
chr8.4	CDS	12676438	12676821	12676438	ID=cds.MS.gene036533.t1;Parent=MS.gene036533.t1

Gene Sequence

>MS.gene036533

ATGGGTAACAGAAAACGTGGCACTACTACTAAAACCCAAGAGGTTCTAAACGTTGAACGTGAAAGAAGGATGAAAATGAAGCAAATGTTCACTCACCTCACTACCACTGTCCCAACTCTCTACCCCAATGTAACTAACATCATTCCTTCCATTTTCTCTTTTATTTTCATTCTTCATACTTCATTTGGGTTTTCAATTTTTCATGTTTAAATGCAAATATTTGATCGACCCATTATGGTTTGATTTGTTATCTGAAATGGGTTTTTGTTTTTAGGCTACACAGGAAGTGATTGTGAACGAAACAATCGAGTACATTAAGAAACTTGAAGAGAAGAAGAAAATGTTGGAGGAGATGAAGGAATCAAAATCAAAGAAACCTGTTGAAGGGGGTTTTAATTTGTTGGTTCCGTGTCGTAATAGGAATCCCAATTTCTCTGTTACGGTTACTGGTTCAAGCAATGTGGCTTTCTTTGGGATTGAATCTGTGGCTAAACCTGGTTTGATTACTGTGATTTTGAAGGTGTTTTTGAAGAATGAAGCTGAGGTTTTAGCTGCTAATGTTTCTGTTAATGATGGTAATTTGATCTTGGCGATCACTGCTTTGGTTCAAAATGGTGCTGCTATTGAGAAGATTAAGAGAGAGATTATGAGTTTGTAG

Protein sequence

>MS.gene036533.t1

MGNRKRGTTTKTQEVLNVERERRMKMKQMFTHLTTTVPTLYPNATQEVIVNETIEYIKKLEEKKKMLEEMKESKSKKPVEGGFNLLVPCRNRNPNFSVTVTGSSNVAFFGIESVAKPGLITVILKVFLKNEAEVLAANVSVNDGNLILAITALVQNGAAIEKIKREIMSL