AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036542

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036542.t1 MTR_4g118720 97.203 143 4 0 26 168 1164 1306 3.45e-90 287
MS.gene036542.t1 MTR_4g118720 100.000 30 0 0 1 30 1010 1039 5.76e-13 66.2
MS.gene036542.t1 MTR_1g105050 52.143 140 57 3 26 161 534 667 1.21e-41 148
MS.gene036542.t1 MTR_5g005840 50.714 140 59 3 26 161 521 654 8.93e-41 145
MS.gene036542.t1 MTR_4g118845 42.857 140 64 4 26 163 158 283 5.35e-27 106
MS.gene036542.t1 MTR_7g090960 35.882 170 88 4 2 161 721 879 6.35e-27 106
MS.gene036542.t1 MTR_7g090960 35.882 170 88 4 2 161 640 798 6.51e-27 106
MS.gene036542.t1 MTR_4g118845 42.857 140 64 4 26 163 345 470 7.54e-27 106
MS.gene036542.t1 MTR_2g020000 42.857 140 64 4 26 163 348 473 8.38e-27 105
MS.gene036542.t1 MTR_5g020000 40.972 144 74 4 26 161 344 484 1.81e-25 102
MS.gene036542.t1 MTR_1g053955 38.037 163 81 4 5 161 661 809 8.85e-25 100
MS.gene036542.t1 MTR_7g078090 36.943 157 74 3 26 161 1151 1303 2.73e-21 90.1
MS.gene036542.t1 MTR_8g010750 84.314 51 8 0 40 90 416 466 4.00e-21 89.4
MS.gene036542.t1 MTR_8g030550 37.342 158 72 4 26 161 1143 1295 2.34e-20 87.4
MS.gene036542.t1 MTR_8g030550 37.342 158 72 4 26 161 1143 1295 2.83e-20 87.4
MS.gene036542.t1 MTR_8g030550 37.342 158 72 4 26 161 1143 1295 3.22e-20 87.0
MS.gene036542.t1 MTR_5g090090 40.000 140 65 3 26 161 781 905 1.64e-18 82.0
MS.gene036542.t1 MTR_5g090090 40.000 140 65 3 26 161 781 905 1.74e-18 82.0
MS.gene036542.t1 MTR_1g013190 37.143 140 66 4 26 161 464 585 4.49e-17 78.2
MS.gene036542.t1 MTR_3g053910 39.437 142 63 5 26 161 735 859 8.65e-17 77.4
MS.gene036542.t1 MTR_3g053910 39.437 142 63 5 26 161 764 888 8.91e-17 77.4
MS.gene036542.t1 MTR_4g096930 36.170 141 68 4 26 161 903 1026 1.25e-15 73.9
MS.gene036542.t1 MTR_3g106210 35.971 139 69 3 26 161 466 587 9.57e-15 71.2
MS.gene036542.t1 MTR_3g106210 35.971 139 69 3 26 161 466 587 9.57e-15 71.2
MS.gene036542.t1 MTR_3g106210 35.971 139 69 3 26 161 466 587 1.05e-14 71.2
MS.gene036542.t1 MTR_3g106210 35.971 139 69 3 26 161 466 587 1.07e-14 71.2
MS.gene036542.t1 MTR_4g035100 29.032 155 89 4 26 161 1612 1764 1.18e-14 71.2
MS.gene036542.t1 MTR_4g035100 29.032 155 89 4 26 161 1612 1764 1.19e-14 71.2
MS.gene036542.t1 MTR_7g045505 34.694 147 77 6 26 161 158 296 2.66e-13 67.0
MS.gene036542.t1 MTR_7g045505 34.694 147 77 6 26 161 158 296 3.63e-13 66.6
MS.gene036542.t1 MTR_1g069755 29.577 142 87 4 26 161 582 716 1.17e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036542.t1 AT2G28290 88.112 143 17 0 26 168 914 1056 1.01e-75 246
MS.gene036542.t1 AT2G28290 100.000 30 0 0 1 30 760 789 7.39e-13 65.9
MS.gene036542.t1 AT2G28290 88.112 143 17 0 26 168 914 1056 1.07e-75 246
MS.gene036542.t1 AT2G28290 100.000 30 0 0 1 30 760 789 7.46e-13 65.9
MS.gene036542.t1 AT2G28290 88.112 143 17 0 26 168 913 1055 1.09e-75 246
MS.gene036542.t1 AT2G28290 100.000 30 0 0 1 30 759 788 7.46e-13 65.9
MS.gene036542.t1 AT2G28290 88.112 143 17 0 26 168 913 1055 1.11e-75 246
MS.gene036542.t1 AT2G28290 100.000 30 0 0 1 30 759 788 7.54e-13 65.9
MS.gene036542.t1 AT2G28290 88.112 143 17 0 26 168 913 1055 1.15e-75 246
MS.gene036542.t1 AT2G28290 100.000 30 0 0 1 30 759 788 7.54e-13 65.9
MS.gene036542.t1 AT2G28290 88.112 143 17 0 26 168 913 1055 1.15e-75 246
MS.gene036542.t1 AT2G28290 100.000 30 0 0 1 30 759 788 7.54e-13 65.9
MS.gene036542.t1 AT5G19310 51.429 140 58 3 26 161 279 412 3.38e-41 147
MS.gene036542.t1 AT3G06010 50.000 140 60 3 26 161 561 694 4.91e-41 146
MS.gene036542.t1 AT5G19310 51.429 140 58 3 26 161 543 676 6.05e-41 146
MS.gene036542.t1 AT3G06400 44.286 140 62 4 26 163 346 471 4.88e-28 109
MS.gene036542.t1 AT3G06400 44.286 140 62 4 26 163 346 471 4.93e-28 109
MS.gene036542.t1 AT3G06400 44.286 140 62 4 26 163 346 471 5.02e-28 109
MS.gene036542.t1 AT5G18620 42.857 140 64 4 26 163 351 476 1.78e-27 107
MS.gene036542.t1 AT5G18620 42.857 140 64 4 26 163 351 476 1.78e-27 107
MS.gene036542.t1 AT3G12810 38.650 163 80 4 5 161 672 820 2.37e-25 102
MS.gene036542.t1 AT3G12810 38.650 163 80 4 5 161 676 824 2.42e-25 102
MS.gene036542.t1 AT3G57300 33.529 170 92 4 2 161 762 920 1.10e-24 100
MS.gene036542.t1 AT3G57300 33.529 170 92 4 2 161 729 887 1.16e-24 100
MS.gene036542.t1 AT3G57300 33.529 170 92 4 2 161 729 887 1.16e-24 100
MS.gene036542.t1 AT3G57300 33.529 170 92 4 2 161 729 887 1.20e-24 99.8
MS.gene036542.t1 AT5G66750 41.892 148 71 6 26 163 362 504 2.14e-23 96.3
MS.gene036542.t1 AT2G46020 36.943 157 74 3 26 161 1138 1290 4.90e-21 89.7
MS.gene036542.t1 AT2G46020 36.943 157 74 3 26 161 1138 1290 4.90e-21 89.7
MS.gene036542.t1 AT2G46020 36.943 157 74 3 26 161 1138 1290 4.90e-21 89.7
MS.gene036542.t1 AT2G46020 36.943 157 74 3 26 161 1137 1289 5.00e-21 89.4
MS.gene036542.t1 AT2G46020 36.943 157 74 3 26 161 1137 1289 5.00e-21 89.4
MS.gene036542.t1 AT2G46020 36.943 157 74 3 26 161 1137 1289 5.00e-21 89.4
MS.gene036542.t1 AT4G31900 38.406 138 62 5 26 161 344 460 1.18e-16 77.0
MS.gene036542.t1 AT4G31900 38.406 138 62 5 26 161 385 501 1.47e-16 76.6
MS.gene036542.t1 AT4G31900 38.406 138 62 5 26 161 385 501 1.47e-16 76.6
MS.gene036542.t1 AT2G13370 38.028 142 65 5 26 161 789 913 3.52e-16 75.5
MS.gene036542.t1 AT2G13370 38.028 142 65 5 26 161 789 913 3.52e-16 75.5
MS.gene036542.t1 AT2G13370 38.028 142 65 5 26 161 789 913 3.52e-16 75.5
MS.gene036542.t1 AT2G25170 35.252 139 70 3 26 161 451 572 5.88e-16 75.1
MS.gene036542.t1 AT2G25170 35.252 139 70 3 26 161 451 572 5.88e-16 75.1
MS.gene036542.t1 AT2G25170 35.252 139 70 3 26 161 477 598 5.89e-16 75.1
MS.gene036542.t1 AT2G25170 35.252 139 70 3 26 161 468 589 6.00e-16 74.7
MS.gene036542.t1 AT3G54280 27.564 156 91 2 26 161 1644 1797 1.67e-13 67.8
MS.gene036542.t1 AT3G54280 27.564 156 91 2 26 161 1613 1766 1.78e-13 67.8
MS.gene036542.t1 AT2G02090 32.317 164 76 6 23 168 381 527 3.21e-13 67.0

Find 37 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGATAATCTTGGTGCTAT+TGG 0.389929 8.4:-12781926 MS.gene036542:CDS
TGGAATCCTTGCGGATGAAA+TGG 0.396254 8.4:-12784039 MS.gene036542:CDS
AATAAGCCATTTGAGAGTAC+TGG 0.421189 8.4:-12782932 MS.gene036542:CDS
CTATACAACAATCATTTGAA+TGG 0.428252 8.4:-12784059 MS.gene036542:CDS
GGGTCTGGGTAAAACAGTTC+AGG 0.428436 8.4:-12784018 MS.gene036542:intron
GAGTGAAGCTGGCTGAGATA+TGG 0.433609 8.4:+12781494 None:intergenic
TCAGATGAATTGAATATGTT+AGG 0.446716 8.4:+12782974 None:intergenic
CCTTGCGGATGAAATGGGTC+TGG 0.450329 8.4:-12784033 MS.gene036542:CDS
GGAATCCTTGCGGATGAAAT+GGG 0.453148 8.4:-12784038 MS.gene036542:CDS
AGAACAACCTTGAAGAACTC+TGG 0.464831 8.4:-12783018 MS.gene036542:CDS
GGTCCATAACTTACTTCATC+GGG 0.467580 8.4:+12782899 None:intergenic
TTATCTCCAGTACTCTCAAA+TGG 0.497413 8.4:+12782926 None:intergenic
GTAGTGCCCAGAGTTCTTCA+AGG 0.497845 8.4:+12783011 None:intergenic
AAGAGAGTGGAAGATAATCT+TGG 0.502358 8.4:-12781935 MS.gene036542:CDS
GTACAAATGGTCTCAAAACT+TGG 0.503024 8.4:+12782734 None:intergenic
TGTCTGTAGATATCAATGAA+TGG 0.503120 8.4:-12784101 None:intergenic
ATACCTCCTCTGAGTGAAGC+TGG 0.516305 8.4:+12781483 None:intergenic
TTAAGCCTCCGAAGTACAAA+TGG 0.527849 8.4:+12782721 None:intergenic
TAACTAGGCTTTACTGTCTG+AGG 0.531178 8.4:-12782788 MS.gene036542:intron
AATGAATGGTTTGAGGTGGT+TGG 0.532953 8.4:-12784087 MS.gene036542:CDS
TGGTGCTATTGGCACTTCAA+AGG 0.533753 8.4:-12781915 MS.gene036542:intron
CTTGCGGATGAAATGGGTCT+GGG 0.534120 8.4:-12784032 MS.gene036542:CDS
TGGTCCATAACTTACTTCAT+CGG 0.540847 8.4:+12782898 None:intergenic
GAACAACCTTGAAGAACTCT+GGG 0.544637 8.4:-12783017 MS.gene036542:CDS
GTCAGTGCACAACTCTGTCA+TGG 0.547166 8.4:-12781540 MS.gene036542:CDS
TGAGACCATTTGTACTTCGG+AGG 0.576819 8.4:-12782726 MS.gene036542:CDS
ATAAGTCTCTCAATCTTCGA+AGG 0.602056 8.4:+12781995 None:intergenic
AGATATCAATGAATGGTTTG+AGG 0.608930 8.4:-12784094 None:intergenic
CCAGACCCATTTCATCCGCA+AGG 0.615319 8.4:+12784033 None:intergenic
TGAGAGACTTATAAGATGTG+AGG 0.619035 8.4:-12781984 MS.gene036542:CDS
TAACATATTCAATTCATCTG+AGG 0.623873 8.4:-12782972 MS.gene036542:CDS
TCTCAGCCAGCTTCACTCAG+AGG 0.638451 8.4:-12781489 MS.gene036542:CDS
ACTTCGGAGGCTTAAACACA+AGG 0.649914 8.4:-12782713 MS.gene036542:intron
TCATTTGAATGGAATCCTTG+CGG 0.653337 8.4:-12784048 MS.gene036542:CDS
CAGCCAGCTTCACTCAGAGG+AGG 0.657729 8.4:-12781486 None:intergenic
CTAGGCTTTACTGTCTGAGG+AGG 0.660304 8.4:-12782785 MS.gene036542:intron
TATCAATGAATGGTTTGAGG+TGG 0.678917 8.4:-12784091 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAATACAAAATCA+AGG + chr8.4:12782750-12782769 None:intergenic 10.0%
!! AAAATATGAAAGAATCAATA+AGG + chr8.4:12782073-12782092 None:intergenic 15.0%
!! AAGAATAATGAATGTATAAA+TGG + chr8.4:12783112-12783131 None:intergenic 15.0%
!! TGAAAATATGATATTGAAAT+CGG - chr8.4:12783437-12783456 MS.gene036542:intron 15.0%
!!! AGATTTTATATATACTTAAG+TGG - chr8.4:12781600-12781619 MS.gene036542:intron 15.0%
!!! ATTGATTCTTTCATATTTTA+GGG - chr8.4:12782074-12782093 MS.gene036542:intron 15.0%
!!! CTTTTACTAGTAAATTTTTT+GGG + chr8.4:12783186-12783205 None:intergenic 15.0%
!!! GATTTTATATATACTTAAGT+GGG - chr8.4:12781601-12781620 MS.gene036542:intron 15.0%
!!! TATTGATTCTTTCATATTTT+AGG - chr8.4:12782073-12782092 MS.gene036542:intron 15.0%
!!! TCTTTTACTAGTAAATTTTT+TGG + chr8.4:12783187-12783206 None:intergenic 15.0%
!!! TTTGTTTTTTTTTTTTCTTG+TGG - chr8.4:12782325-12782344 MS.gene036542:intron 15.0%
!! CACTATATAATAATTGATGA+AGG - chr8.4:12782191-12782210 MS.gene036542:intron 20.0%
!! CCTATAATATAAGAAAACAT+TGG + chr8.4:12783544-12783563 None:intergenic 20.0%
!!! CCAATGTTTTCTTATATTAT+AGG - chr8.4:12783541-12783560 MS.gene036542:intron 20.0%
!!! GATTGTTGTTTTTCAATTAA+AGG - chr8.4:12783888-12783907 MS.gene036542:intron 20.0%
!!! GTGGAAAGATATTTTAATTA+GGG + chr8.4:12783965-12783984 None:intergenic 20.0%
!!! TAGACAATTTTATGAATACT+AGG + chr8.4:12781953-12781972 None:intergenic 20.0%
!!! TATTCTTTTAATTTTGCTTG+AGG - chr8.4:12783125-12783144 MS.gene036542:intron 20.0%
!!! TCTTTTCTTTTTAATCAGAA+GGG - chr8.4:12783759-12783778 MS.gene036542:intron 20.0%
!!! TGTGGAAAGATATTTTAATT+AGG + chr8.4:12783966-12783985 None:intergenic 20.0%
!!! TGTGTAAGTTTTATATAGAT+GGG + chr8.4:12782703-12782722 None:intergenic 20.0%
!!! TTCTTTTCTTTTTAATCAGA+AGG - chr8.4:12783758-12783777 MS.gene036542:intron 20.0%
!!! TTGAATGGTTTTATATATGT+AGG - chr8.4:12783315-12783334 MS.gene036542:intron 20.0%
!!! TTGTGTAAGTTTTATATAGA+TGG + chr8.4:12782704-12782723 None:intergenic 20.0%
! AATCATAGAACTCCAAAAAA+TGG + chr8.4:12781701-12781720 None:intergenic 25.0%
! ACAAAAAAAAAAACCTGCAA+TGG + chr8.4:12782302-12782321 None:intergenic 25.0%
! ACACGAGTATACAAAATTTA+AGG + chr8.4:12782923-12782942 None:intergenic 25.0%
! AGAAGCTAATAATATCAGTA+AGG + chr8.4:12783487-12783506 None:intergenic 25.0%
! ATAAACGTTAGTTCAATTTC+TGG - chr8.4:12783257-12783276 MS.gene036542:intron 25.0%
! ATAAATGGAAAAACATACAC+TGG + chr8.4:12783097-12783116 None:intergenic 25.0%
! ATCATTCAACAAAAAGCAAA+AGG + chr8.4:12783698-12783717 None:intergenic 25.0%
! ATTCATAAAATTGTCTATGC+TGG - chr8.4:12781956-12781975 MS.gene036542:CDS 25.0%
! CTATACAACAATCATTTGAA+TGG - chr8.4:12781514-12781533 MS.gene036542:CDS 25.0%
! GAAATCACCTACAAAATAAA+AGG + chr8.4:12781824-12781843 None:intergenic 25.0%
! GTAATATAGAATTTGATGCA+TGG - chr8.4:12783281-12783300 MS.gene036542:intron 25.0%
! GTTACATTAGTAAATGTTAG+AGG + chr8.4:12783237-12783256 None:intergenic 25.0%
! TAAATGGAAAAACATACACT+GGG + chr8.4:12783096-12783115 None:intergenic 25.0%
! TAACATATTCAATTCATCTG+AGG - chr8.4:12782601-12782620 MS.gene036542:intron 25.0%
! TATTTATATTCCCAATTGTC+AGG - chr8.4:12784006-12784025 MS.gene036542:intron 25.0%
! TCAAAAGAACATTGAATTTG+TGG + chr8.4:12782112-12782131 None:intergenic 25.0%
! TCAGATGAATTGAATATGTT+AGG + chr8.4:12782602-12782621 None:intergenic 25.0%
! TGTAAATGTCACAGAAAAAA+AGG + chr8.4:12782507-12782526 None:intergenic 25.0%
!! AGAACATTTGTGATTTGTAT+AGG - chr8.4:12781784-12781803 MS.gene036542:intron 25.0%
!! ATGGTATCTTTAAGTTTGAA+TGG - chr8.4:12783300-12783319 MS.gene036542:intron 25.0%
!!! AAGTTTTATATAGATGGGAT+TGG + chr8.4:12782698-12782717 None:intergenic 25.0%
!!! ATTCTTTCATATTTTAGGGA+AGG - chr8.4:12782078-12782097 MS.gene036542:intron 25.0%
!!! TTACTGTCCTTTTATTTTGT+AGG - chr8.4:12781814-12781833 MS.gene036542:intron 25.0%
AAAGGACAAAAGTGAAACAA+AGG + chr8.4:12782489-12782508 None:intergenic 30.0%
AAGGACAAAAGTGAAACAAA+GGG + chr8.4:12782488-12782507 None:intergenic 30.0%
ACTACCAAAAATGCTAGTAT+TGG + chr8.4:12781655-12781674 None:intergenic 30.0%
AGTCCAATTACTTGAATAAC+CGG + chr8.4:12782000-12782019 None:intergenic 30.0%
ATAGAACTCCAAAAAATGGA+CGG + chr8.4:12781697-12781716 None:intergenic 30.0%
ATGGAAACCAAAAATGATAG+AGG - chr8.4:12781860-12781879 MS.gene036542:intron 30.0%
GAGGACAAAAAAAAGCAAAT+AGG + chr8.4:12781629-12781648 None:intergenic 30.0%
TGTGTACATGCTAAAAATCA+TGG - chr8.4:12781734-12781753 MS.gene036542:intron 30.0%
! AAAACTTTTGATGAAGAGAG+TGG - chr8.4:12783625-12783644 MS.gene036542:intron 30.0%
! AAAATGCTAGTATTGGAAAG+AGG + chr8.4:12781648-12781667 None:intergenic 30.0%
! AAAGTATCAAACAGATGAAG+GGG + chr8.4:12782036-12782055 None:intergenic 30.0%
! ACAAAGTATCAAACAGATGA+AGG + chr8.4:12782038-12782057 None:intergenic 30.0%
! CAAAGTATCAAACAGATGAA+GGG + chr8.4:12782037-12782056 None:intergenic 30.0%
! CTTTCCAATACTAGCATTTT+TGG - chr8.4:12781648-12781667 MS.gene036542:intron 30.0%
! TTTCAAGTCATTGTAAGTGA+TGG + chr8.4:12783422-12783441 None:intergenic 30.0%
!! GTTGTTTTCTGTTTGTAACT+AGG - chr8.4:12782770-12782789 MS.gene036542:CDS 30.0%
!! TGCAAGAAGCATTCTTTATT+CGG + chr8.4:12782220-12782239 None:intergenic 30.0%
!!! ATATGCTTGTGCTTTTTCTT+GGG - chr8.4:12782418-12782437 MS.gene036542:intron 30.0%
!!! TATCATTTTTGGTTTCCATC+AGG + chr8.4:12781859-12781878 None:intergenic 30.0%
!!! TTTTGAGACCATTTGTACTT+CGG - chr8.4:12782844-12782863 MS.gene036542:intron 30.0%
AAGAGAGTGGAAGATAATCT+TGG - chr8.4:12783638-12783657 MS.gene036542:intron 35.0%
AAGTATCAAACAGATGAAGG+GGG + chr8.4:12782035-12782054 None:intergenic 35.0%
ATAAGTCTCTCAATCTTCGA+AGG + chr8.4:12783581-12783600 None:intergenic 35.0%
ATAATATCAGTAAGGCAGAC+TGG + chr8.4:12783479-12783498 None:intergenic 35.0%
CATATAAGAGCCTGAAAGAA+AGG + chr8.4:12782465-12782484 None:intergenic 35.0%
GAAAAACATACACTGGGATA+AGG + chr8.4:12783090-12783109 None:intergenic 35.0%
GTAACTTGACCATTTGATAG+TGG - chr8.4:12783718-12783737 MS.gene036542:intron 35.0%
GTACAAATGGTCTCAAAACT+TGG + chr8.4:12782842-12782861 None:intergenic 35.0%
GTGCAATATTGCACATGTTA+AGG + chr8.4:12783955-12783936 None:intergenic 35.0%
TAGAACTCCAAAAAATGGAC+GGG + chr8.4:12781696-12781715 None:intergenic 35.0%
TCATTTGAATGGAATCCTTG+CGG - chr8.4:12781525-12781544 MS.gene036542:CDS 35.0%
TGAGAGACTTATAAGATGTG+AGG - chr8.4:12783589-12783608 MS.gene036542:intron 35.0%
TGCATCAGATAGCTTAAACA+TGG + chr8.4:12783352-12783371 None:intergenic 35.0%
TGGTCCATAACTTACTTCAT+CGG + chr8.4:12782678-12782697 None:intergenic 35.0%
TTATCTCCAGTACTCTCAAA+TGG + chr8.4:12782650-12782669 None:intergenic 35.0%
TTGGAAACACAAGAACAACA+AGG + chr8.4:12783525-12783544 None:intergenic 35.0%
! AATAAGCCATTTGAGAGTAC+TGG - chr8.4:12782641-12782660 MS.gene036542:intron 35.0%
! GAATGGTCCTCTATCATTTT+TGG + chr8.4:12781870-12781889 None:intergenic 35.0%
! GGAGTCAGAGATAAACTTTT+GGG - chr8.4:12781925-12781944 MS.gene036542:CDS 35.0%
!! AAGAAGCATTCTTTATTCGG+TGG + chr8.4:12782217-12782236 None:intergenic 35.0%
!! GAAGATAATCTTGGTGCTAT+TGG - chr8.4:12783647-12783666 MS.gene036542:intron 35.0%
!! TTCTCTAATTTGCTACCTGA+TGG - chr8.4:12781841-12781860 MS.gene036542:intron 35.0%
!!! CATATGCTTGTGCTTTTTCT+TGG - chr8.4:12782417-12782436 MS.gene036542:intron 35.0%
AGAACAACCTTGAAGAACTC+TGG - chr8.4:12782555-12782574 MS.gene036542:intron 40.0%
AGAACTCCAAAAAATGGACG+GGG + chr8.4:12781695-12781714 None:intergenic 40.0%
ATATTCCCAATTGTCAGGCT+CGG - chr8.4:12784011-12784030 MS.gene036542:intron 40.0%
ATCCTCAGTCCACTATCAAA+TGG + chr8.4:12783730-12783749 None:intergenic 40.0%
CAAAGCTGAGCAAAGTACAT+TGG - chr8.4:12782168-12782187 MS.gene036542:intron 40.0%
CAATGTACTTTGCTCAGCTT+TGG + chr8.4:12782170-12782189 None:intergenic 40.0%
CATTTACAGTCTGTAACTGC+TGG - chr8.4:12782519-12782538 MS.gene036542:intron 40.0%
CCACAAAAGTTGTTCATGTG+TGG + chr8.4:12783984-12784003 None:intergenic 40.0%
GAACAACCTTGAAGAACTCT+GGG - chr8.4:12782556-12782575 MS.gene036542:intron 40.0%
GGTCCATAACTTACTTCATC+GGG + chr8.4:12782677-12782696 None:intergenic 40.0%
GTAAATGTTAGAGGCAACAC+AGG + chr8.4:12783228-12783247 None:intergenic 40.0%
TAACTAGGCTTTACTGTCTG+AGG - chr8.4:12782785-12782804 MS.gene036542:intron 40.0%
TCACCCGATGAAGTAAGTTA+TGG - chr8.4:12782671-12782690 MS.gene036542:intron 40.0%
TTAAGCCTCCGAAGTACAAA+TGG + chr8.4:12782855-12782874 None:intergenic 40.0%
! ACGCCGGTTATTCAAGTAAT+TGG - chr8.4:12781994-12782013 MS.gene036542:CDS 40.0%
! CATCTGAGGACTTTTCTCAA+TGG - chr8.4:12782615-12782634 MS.gene036542:intron 40.0%
! CCACACATGAACAACTTTTG+TGG - chr8.4:12783981-12784000 MS.gene036542:intron 40.0%
! GGGAGTCAGAGATAAACTTT+TGG - chr8.4:12781924-12781943 MS.gene036542:CDS 40.0%
! TAAGTGATGGAGAGACAAGA+TGG + chr8.4:12783409-12783428 None:intergenic 40.0%
! TCTCACAGATTGCTGTTAAC+TGG - chr8.4:12782272-12782291 MS.gene036542:intron 40.0%
!!! TATAGACCCCGTCCATTTTT+TGG - chr8.4:12781686-12781705 MS.gene036542:intron 40.0%
ACTTCGGAGGCTTAAACACA+AGG - chr8.4:12782860-12782879 MS.gene036542:intron 45.0%
GGAATCCTTGCGGATGAAAT+GGG - chr8.4:12781535-12781554 MS.gene036542:CDS 45.0%
GTTAACTGGAACACCATTGC+AGG - chr8.4:12782286-12782305 MS.gene036542:intron 45.0%
GTTTATCTCTGACTCCCAAC+CGG + chr8.4:12781921-12781940 None:intergenic 45.0%
TGAGACCATTTGTACTTCGG+AGG - chr8.4:12782847-12782866 MS.gene036542:intron 45.0%
TGGAATCCTTGCGGATGAAA+TGG - chr8.4:12781534-12781553 MS.gene036542:CDS 45.0%
TTCTGCTCAGCCTTTCTTTC+AGG - chr8.4:12782452-12782471 MS.gene036542:intron 45.0%
TTTATCTCTGACTCCCAACC+GGG + chr8.4:12781920-12781939 None:intergenic 45.0%
! CTGAAGAGGGTACAACAACA+AGG + chr8.4:12781892-12781911 None:intergenic 45.0%
! GAGGGTACAACAACAAGGAA+TGG + chr8.4:12781887-12781906 None:intergenic 45.0%
!! GACCATTTGATAGTGGACTG+AGG - chr8.4:12783725-12783744 MS.gene036542:intron 45.0%
!! TGGTGCTATTGGCACTTCAA+AGG - chr8.4:12783658-12783677 MS.gene036542:intron 45.0%
!!! TTTTATTAAAAAAAATGAAA+TGG + chr8.4:12782386-12782405 None:intergenic 5.0%
ACAGCAATCTGTGAGAGCTC+TGG + chr8.4:12782268-12782287 None:intergenic 50.0%
ACTGACCGAGCCTGACAATT+GGG + chr8.4:12784019-12784038 None:intergenic 50.0%
CAACCGGGTAGAACTGAAGA+GGG + chr8.4:12781905-12781924 None:intergenic 50.0%
CTAGGCTTTACTGTCTGAGG+AGG - chr8.4:12782788-12782807 MS.gene036542:intron 50.0%
CTCTTCAGTTCTACCCGGTT+GGG - chr8.4:12781904-12781923 MS.gene036542:intron 50.0%
CTTGCGGATGAAATGGGTCT+GGG - chr8.4:12781541-12781560 MS.gene036542:CDS 50.0%
GAGTGAAGCTGGCTGAGATA+TGG + chr8.4:12784082-12784101 None:intergenic 50.0%
GGGTCTGGGTAAAACAGTTC+AGG - chr8.4:12781555-12781574 MS.gene036542:intron 50.0%
GTACCCTCTTCAGTTCTACC+CGG - chr8.4:12781899-12781918 MS.gene036542:intron 50.0%
GTAGTGCCCAGAGTTCTTCA+AGG + chr8.4:12782565-12782584 None:intergenic 50.0%
GTCAGTGCACAACTCTGTCA+TGG - chr8.4:12784033-12784052 MS.gene036542:CDS 50.0%
AATAACCGGCGTCTCTCCTC+TGG + chr8.4:12781986-12782005 None:intergenic 55.0%
CACTGACCGAGCCTGACAAT+TGG + chr8.4:12784020-12784039 None:intergenic 55.0%
CCAACCGGGTAGAACTGAAG+AGG + chr8.4:12781906-12781925 None:intergenic 55.0%
CCAGACCCATTTCATCCGCA+AGG + chr8.4:12781543-12781562 None:intergenic 55.0%
CCTCTTCAGTTCTACCCGGT+TGG - chr8.4:12781903-12781922 MS.gene036542:intron 55.0%
CCTTGCGGATGAAATGGGTC+TGG - chr8.4:12781540-12781559 MS.gene036542:CDS 55.0%
TCTCAGCCAGCTTCACTCAG+AGG - chr8.4:12784084-12784103 MS.gene036542:CDS 55.0%
TGTCTATGCTGGACCGCCAG+AGG - chr8.4:12781967-12781986 MS.gene036542:CDS 60.0%
AACCGGCGTCTCTCCTCTGG+CGG + chr8.4:12781983-12782002 None:intergenic 65.0%
GACCGCCAGAGGAGAGACGC+CGG - chr8.4:12781978-12781997 MS.gene036542:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 12781487 12784108 12781487 ID=MS.gene036542
chr8.4 mRNA 12781487 12784108 12781487 ID=MS.gene036542.t1;Parent=MS.gene036542
chr8.4 exon 12784019 12784108 12784019 ID=MS.gene036542.t1.exon1;Parent=MS.gene036542.t1
chr8.4 CDS 12784019 12784108 12784019 ID=cds.MS.gene036542.t1;Parent=MS.gene036542.t1
chr8.4 exon 12782913 12783038 12782913 ID=MS.gene036542.t1.exon2;Parent=MS.gene036542.t1
chr8.4 CDS 12782913 12783038 12782913 ID=cds.MS.gene036542.t1;Parent=MS.gene036542.t1
chr8.4 exon 12782714 12782803 12782714 ID=MS.gene036542.t1.exon3;Parent=MS.gene036542.t1
chr8.4 CDS 12782714 12782803 12782714 ID=cds.MS.gene036542.t1;Parent=MS.gene036542.t1
chr8.4 exon 12781916 12782032 12781916 ID=MS.gene036542.t1.exon4;Parent=MS.gene036542.t1
chr8.4 CDS 12781916 12782032 12781916 ID=cds.MS.gene036542.t1;Parent=MS.gene036542.t1
chr8.4 exon 12781487 12781567 12781487 ID=MS.gene036542.t1.exon5;Parent=MS.gene036542.t1
chr8.4 CDS 12781487 12781567 12781487 ID=cds.MS.gene036542.t1;Parent=MS.gene036542.t1
Gene Sequence

>MS.gene036542

ATGAATGGTTTGAGGTGGTTGGTTTCGCTATACAACAATCATTTGAATGGAATCCTTGCGGATGAAATGGGTCTGGGTAAAACAGTTCAGGTAATCAATTATGTTAACTGATAAGATTTTATATATACTTAAGTGGGTTCCTATTTGCTTTTTTTTGTCCTCTTTCCAATACTAGCATTTTTGGTAGTATGTCATTTACTATAGACCCCGTCCATTTTTTGGAGTTCTATGATTGTGTTACAGTGCATGTGTACATGCTAAAAATCATGGTGCATATTTTGTACTAGAAAGATCAGAAGAACATTTGTGATTTGTATAGGTAAAATCTTACTGTCCTTTTATTTTGTAGGTGATTTCTCTAATTTGCTACCTGATGGAAACCAAAAATGATAGAGGACCATTCCTTGTTGTTGTACCCTCTTCAGTTCTACCCGGTTGGGAGTCAGAGATAAACTTTTGGGCTCCTAGTATTCATAAAATTGTCTATGCTGGACCGCCAGAGGAGAGACGCCGGTTATTCAAGTAATTGGACTTCAAGATATTGACCCCCTTCATCTGTTTGATACTTTGTCTTGTGTATGTTCCTTATTGATTCTTTCATATTTTAGGGAAGGATTGTTCACCACAAATTCAATGTTCTTTTGACAACGTATGAATATCTGATGAACAAGCATGATAGACCAAAGCTGAGCAAAGTACATTGGCACTATATAATAATTGATGAAGGCCACCGAATAAAGAATGCTTCTTGCAAGTTGAATGCTGACTTGAAACACTACCAGAGCTCTCACAGATTGCTGTTAACTGGAACACCATTGCAGGTTTTTTTTTTTGTTCTTTTGTTTTTTTTTTTTCTTGTGGCTCTTATTGCAGTTTACTTAGCATTTCTGCTTGTACCATTTCATTTTTTTTAATAAAATCTTCTTAAAACATATGCTTGTGCTTTTTCTTGGGAATGACACAGTTTCTGCTCAGCCTTTCTTTCAGGCTCTTATATGCCCTTTGTTTCACTTTTGTCCTTTTTTTCTGTGACATTTACAGTCTGTAACTGCTGGTTTCTTTATGTGCAGAACAACCTTGAAGAACTCTGGGCACTACTTAACTTCTTGTTGCCTAACATATTCAATTCATCTGAGGACTTTTCTCAATGGTTTAATAAGCCATTTGAGAGTACTGGAGATAACTCACCCGATGAAGTAAGTTATGGACCAATCCCATCTATATAAAACTTACACAAAGTTTTTGTTCTAAGTTAAGCTTCCTTGATTTTGTATTTTTATTTTGTTGTTTTCTGTTTGTAACTAGGCTTTACTGTCTGAGGAGGAGAATCTCTTGATCATAAATCGTCTGCACCAAGTTTTGAGACCATTTGTACTTCGGAGGCTTAAACACAAGGTCATTAATACTCAACTTTAAACTTATTTCTTACGTCTCCTTAAATTTTGTATACTCGTGTCTATGAGCACAGTTTGTTATTTTCTTATGTATATATACTTGTATGTCTTATGAGTTATGATTCTTGTTTTGATTCTTATAATCAGTTGTTCACTCTTAGTAGTACGTGAAATTATTAATAATTTCAAGTACTTGATATTATTATCCTTATCCCAGTGTATGTTTTTCCATTTATACATTCATTATTCTTTTAATTTTGCTTGAGGCTTTAATTTCTGTGTGTTTTGTATTCGTGAGCATTCCCAAAAAATTTACTAGTAAAAGAATTTTTAGCATTCAGCAGCCTGTGTTGCCTCTAACATTTACTAATGTAACATAAACGTTAGTTCAATTTCTGGTGTAATATAGAATTTGATGCATGGTATCTTTAAGTTTGAATGGTTTTATATATGTAGGAAATATATTTTCCATGTTTAAGCTATCTGATGCAGTTGTTTTCATTATATGTTATTTGAACGTGACTGCCATCTTGTCTCTCCATCACTTACAATGACTTGAAAATATGATATTGAAATCGGCAATGTAGCTTGTCTGCCAGTCTGCCTTACTGATATTATTAGCTTCTGAAATCATCATCTCACCTTGTTGTTCTTGTGTTTCCAATGTTTTCTTATATTATAGGTTGAAAATCAGCTGCCTTCGAAGATTGAGAGACTTATAAGATGTGAGGCTTCTTCATATCAAAAACTTTTGATGAAGAGAGTGGAAGATAATCTTGGTGCTATTGGCACTTCAAAGGTATTCTTTATAGTACCTTTTGCTTTTTGTTGAATGATGTAACTTGACCATTTGATAGTGGACTGAGGATTTATTTACTTCTTTTCTTTTTAATCAGAAGGGTTTTTCTATCATGTGCAAATTTGCACATGTTAAGAAGTTCAAAACTGTAAATTTGTATTGTAACTTGTGTATTTTATACTATTAAATATGTAACTTTTAAATAAATGATTGTTGTTTTTCAATTAAAGGTTGCTACTTTTAGTTTCCTTAACATGTGCAATATTGCACATGTTAGACAAACCCTAATTAAAATATCTTTCCACACATGAACAACTTTTGTGGTCTATTTATATTCCCAATTGTCAGGCTCGGTCAGTGCACAACTCTGTCATGGAGCTTCGAAATATATGCAATCATCCATATCTCAGCCAGCTTCACTCAGAGGAG
Protein sequence

>MS.gene036542.t1

MNGLRWLVSLYNNHLNGILADEMGLGKTVQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESTGDNSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENQLPSKIERLIRCEASSYQKLLMKRVEDNLGAIGTSKARSVHNSVMELRNICNHPYLSQLHSEE