AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036569

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036569.t1 MTR_4g117990 97.059 340 8 2 1 339 1 339 0.0 679
MS.gene036569.t1 MTR_7g081190 54.859 319 97 7 37 317 39 348 3.14e-84 260
MS.gene036569.t1 MTR_5g017500 42.636 129 60 2 16 142 6 122 6.97e-29 111
MS.gene036569.t1 MTR_3g014280 26.667 315 158 9 32 312 26 301 5.46e-19 86.7
MS.gene036569.t1 MTR_4g079960 34.328 134 79 5 15 143 2 131 5.07e-14 72.0
MS.gene036569.t1 MTR_4g079960 34.328 134 79 5 15 143 2 131 6.21e-14 72.0
MS.gene036569.t1 MTR_4g079960 35.897 117 69 3 29 143 19 131 1.03e-13 71.2
MS.gene036569.t1 MTR_1g061600 37.143 105 62 2 44 148 133 233 1.59e-13 71.6
MS.gene036569.t1 MTR_2g016140 29.907 107 71 3 32 135 9 114 2.07e-11 64.3
MS.gene036569.t1 MTR_2g016140 29.907 107 71 3 32 135 9 114 2.46e-11 64.3
MS.gene036569.t1 MTR_8g022290 34.066 91 55 1 18 103 37 127 4.08e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036569.t1 AT2G44730 47.401 327 105 8 35 317 55 358 7.83e-83 256
MS.gene036569.t1 AT3G24860 30.450 289 140 8 37 309 58 301 1.58e-29 115
MS.gene036569.t1 AT4G17060 53.425 73 34 0 253 325 235 307 9.54e-19 85.9
MS.gene036569.t1 AT3G58630 33.333 117 69 1 43 150 25 141 2.78e-16 79.0
MS.gene036569.t1 AT3G58630 33.333 117 69 1 43 150 25 141 2.90e-16 78.6
MS.gene036569.t1 AT3G14180 33.103 145 81 4 2 135 33 172 4.97e-15 76.3
MS.gene036569.t1 AT3G10030 40.217 92 51 2 44 135 161 248 1.60e-13 71.6
MS.gene036569.t1 AT3G10030 40.217 92 51 2 44 135 161 248 1.93e-13 71.6
MS.gene036569.t1 AT3G54390 32.692 104 63 1 38 141 32 128 3.37e-11 63.5
MS.gene036569.t1 AT3G54390 32.692 104 63 1 38 141 48 144 3.73e-11 63.5

Find 104 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGGGAGAGCGAGAGGGAG+GGG 0.247071 8.3:+8250847 None:intergenic
TCTGATTCAGATTAGGATTA+GGG 0.281845 8.3:+8250227 None:intergenic
GTGGGTTCACTTTAAGCTTA+TGG 0.284555 8.3:-8250533 MS.gene036569:CDS
TTGGTGGAGGATTTAGGATT+AGG 0.294445 8.3:-8250300 MS.gene036569:CDS
GCAACGGCCACGAAGGGATT+GGG 0.306955 8.3:-8250184 MS.gene036569:CDS
GATGGAATTCTCTTATTGAT+AGG 0.313357 8.3:+8249923 None:intergenic
GGAGGAGTGGTGGTTGAAGG+AGG 0.317249 8.3:+8250898 None:intergenic
GGTGGGATAGGGAGTGGAGC+AGG 0.335913 8.3:+8250829 None:intergenic
GAGCAGGGAGAGCGAGAGGG+AGG 0.343320 8.3:+8250845 None:intergenic
GATGAGAGCTAGTGTTTCTT+CGG 0.346111 8.3:+8250771 None:intergenic
CAGGGAGAGCGAGAGGGAGG+GGG 0.347743 8.3:+8250848 None:intergenic
AGGAGGGAGACGGCGGGTGG+AGG 0.351853 8.3:+8250807 None:intergenic
ATCGGAGAGAGGAGGAGGAG+TGG 0.352089 8.3:+8250885 None:intergenic
GGGTGATGGGTTTGTGAGAA+TGG 0.354314 8.3:-8250107 MS.gene036569:CDS
GTGGTGTTGGTGGAGGATTT+AGG 0.354708 8.3:-8250306 MS.gene036569:CDS
ATGAGAGCTAGTGTTTCTTC+GGG 0.355967 8.3:+8250772 None:intergenic
TTCTGATTCAGATTAGGATT+AGG 0.360137 8.3:+8250226 None:intergenic
GGGAGGAGGGAGACGGCGGG+TGG 0.360567 8.3:+8250804 None:intergenic
CGGCGGGTGGAGGGTGGGAT+AGG 0.369593 8.3:+8250817 None:intergenic
GGAGGAGGAGTGGTGGTTGA+AGG 0.374630 8.3:+8250895 None:intergenic
GGTGGTAGTGGTGGTGTTGG+TGG 0.391476 8.3:-8250316 MS.gene036569:CDS
GGGAGACGGCGGGTGGAGGG+TGG 0.391865 8.3:+8250811 None:intergenic
GGCAACGGCCACGAAGGGAT+TGG 0.405107 8.3:-8250185 MS.gene036569:CDS
TGGTAGTTCTGATTCAGATT+AGG 0.405176 8.3:+8250220 None:intergenic
GGTAGTGGTGGTGTTGGTGG+AGG 0.409117 8.3:-8250313 MS.gene036569:CDS
AACGGTTTCGGTGGCGGAAT+CGG 0.412071 8.3:-8250355 MS.gene036569:CDS
GGTGGTGGTAGTGGTGGTGT+TGG 0.418943 8.3:-8250319 MS.gene036569:CDS
CCCTTCGTGGCCGTTGCCAT+TGG 0.420642 8.3:+8250190 None:intergenic
TTCGTGGCCGTTGCCATTGG+TGG 0.421581 8.3:+8250193 None:intergenic
GTGGAGGGTGGGATAGGGAG+TGG 0.424548 8.3:+8250823 None:intergenic
ATCTTGTGACGGCATTGAAC+AGG 0.427497 8.3:+8250631 None:intergenic
CTTGTTCCCCAATCCCTTCG+TGG 0.427969 8.3:+8250177 None:intergenic
TTCGGTGGCGGAATCGGTGG+TGG 0.431601 8.3:-8250349 MS.gene036569:CDS
CTTTAAGCTTATGGATTCCA+TGG 0.436353 8.3:-8250524 MS.gene036569:CDS
TGTATCTGCGATTAAATTGT+TGG 0.442896 8.3:-8250128 MS.gene036569:CDS
TATAAGAACGGTTTCGGTGG+CGG 0.444102 8.3:-8250361 MS.gene036569:CDS
GAGGAGTGGTGGTTGAAGGA+GGG 0.444252 8.3:+8250899 None:intergenic
CCGTTGCCATTGGTGGAGTA+TGG 0.446576 8.3:+8250200 None:intergenic
AAGTTGTATAAGAACGGTTT+CGG 0.449906 8.3:-8250367 MS.gene036569:CDS
GGAGGGAGACGGCGGGTGGA+GGG 0.450430 8.3:+8250808 None:intergenic
GCCGTCTCCCTCCTCCCTGC+TGG 0.452920 8.3:-8250798 MS.gene036569:CDS
AGGAGTGGTGGTTGAAGGAG+GGG 0.455601 8.3:+8250900 None:intergenic
CGATTAAATTGTTGGGTGAT+GGG 0.458197 8.3:-8250120 MS.gene036569:CDS
GTGGGATAGGGAGTGGAGCA+GGG 0.462787 8.3:+8250830 None:intergenic
TCCTCATTCGAGATTCAATT+CGG 0.462894 8.3:-8250557 MS.gene036569:CDS
GTCACAAGATGGAGAAGCTT+CGG 0.475663 8.3:-8250618 MS.gene036569:CDS
GGAGACGGCGGGTGGAGGGT+GGG 0.478675 8.3:+8250812 None:intergenic
AGTGGAGCAGGGAGAGCGAG+AGG 0.479605 8.3:+8250841 None:intergenic
GTATCTGCGATTAAATTGTT+GGG 0.482195 8.3:-8250127 MS.gene036569:CDS
CATTATGATTGTTGTGGTGA+TGG 0.489229 8.3:+8249905 None:intergenic
ATCAATAAGTTGTATAAGAA+CGG 0.492654 8.3:-8250373 MS.gene036569:CDS
GTTGAAGGAGGGGAAGACAT+TGG 0.494183 8.3:+8250910 None:intergenic
CGTGACAAATGGTACTCTCT+TGG 0.494378 8.3:-8250739 MS.gene036569:CDS
TTTAGTGGTGGTGGTAGTGG+TGG 0.494849 8.3:-8250325 MS.gene036569:CDS
AGCAGGGAGAGCGAGAGGGA+GGG 0.499132 8.3:+8250846 None:intergenic
GAGAATGGAGCAAAAGAAGA+TGG 0.500362 8.3:-8250092 MS.gene036569:CDS
GGAGAGAGGAGGAGGAGTGG+TGG 0.506258 8.3:+8250888 None:intergenic
ACCAGCAGGGAGGAGGGAGA+CGG 0.506473 8.3:+8250797 None:intergenic
GCGATTAAATTGTTGGGTGA+TGG 0.506498 8.3:-8250121 MS.gene036569:CDS
GCAGATACAACCTCAGTCAA+TGG 0.509994 8.3:+8250142 None:intergenic
GCAGGGAGGAGGGAGACGGC+GGG 0.511588 8.3:+8250801 None:intergenic
GGCGGGTGGAGGGTGGGATA+GGG 0.512182 8.3:+8250818 None:intergenic
GTAATCTCAAAGCCACTCAC+TGG 0.525271 8.3:-8250711 MS.gene036569:CDS
GCTGTCATCGGAAACTGCCT+TGG 0.529999 8.3:+8249973 None:intergenic
GGTTTCGGTGGCGGAATCGG+TGG 0.531244 8.3:-8250352 MS.gene036569:CDS
AGCGACTTCTTGCCAGTGAG+TGG 0.532762 8.3:+8250699 None:intergenic
TCGACTCCTACCGTGACAAA+TGG 0.536305 8.3:-8250750 MS.gene036569:CDS
GTGGAGCAGGGAGAGCGAGA+GGG 0.538286 8.3:+8250842 None:intergenic
ACTGTTGTTATTGCTGTCAT+CGG 0.538503 8.3:+8249961 None:intergenic
TGAAACTATGAGGATGGAGA+TGG 0.538920 8.3:-8250053 MS.gene036569:CDS
CGAAGGGATTGGGGAACAAG+AGG 0.540694 8.3:-8250174 MS.gene036569:CDS
TTTGATTCAGGTTGTGCCGG+TGG 0.545116 8.3:+8250274 None:intergenic
AGCAGGGAGGAGGGAGACGG+CGG 0.547257 8.3:+8250800 None:intergenic
TTCGAGATTCAATTCGGCGT+GGG 0.547366 8.3:-8250551 MS.gene036569:CDS
TGTTCAATGCCGTCACAAGA+TGG 0.547819 8.3:-8250629 MS.gene036569:CDS
CGAGGGAGATTGAAACTATG+AGG 0.548584 8.3:-8250063 MS.gene036569:CDS
TTGTATAAGAACGGTTTCGG+TGG 0.552376 8.3:-8250364 MS.gene036569:CDS
CAACGGCCACGAAGGGATTG+GGG 0.553536 8.3:-8250183 MS.gene036569:CDS
CTTATGGATTCCATGGAGAA+AGG 0.553692 8.3:-8250517 MS.gene036569:CDS
TGAATCTCAACAGCGAATTG+TGG 0.554265 8.3:-8250005 MS.gene036569:CDS
ACCAATGGCAACGGCCACGA+AGG 0.566202 8.3:-8250191 MS.gene036569:CDS
AAAAGAAGATGGAGATGGCG+AGG 0.571525 8.3:-8250081 MS.gene036569:CDS
CCAATGGCAACGGCCACGAA+GGG 0.574376 8.3:-8250190 MS.gene036569:CDS
GAAGCTTCTCCATCTTGTGA+CGG 0.577882 8.3:+8250620 None:intergenic
ATTTAGGATTAGGTATCCAC+CGG 0.578430 8.3:-8250290 MS.gene036569:CDS
GGAGATTGAAACTATGAGGA+TGG 0.585982 8.3:-8250059 MS.gene036569:CDS
AAATGGTACTCTCTTGGCCG+CGG 0.594791 8.3:-8250733 MS.gene036569:CDS
GAAGGGATTGGGGAACAAGA+GGG 0.597432 8.3:-8250173 MS.gene036569:CDS
CCATACTCCACCAATGGCAA+CGG 0.603853 8.3:-8250200 MS.gene036569:CDS
AGGAGAAGGACCTTTCTCCA+TGG 0.610673 8.3:+8250507 None:intergenic
GAGAGCTAGTGTTTCTTCGG+GGG 0.612128 8.3:+8250774 None:intergenic
AAAGAAGATGGAGATGGCGA+GGG 0.614159 8.3:-8250080 MS.gene036569:CDS
GTCGAACATTATGATTGTTG+TGG 0.614285 8.3:+8249899 None:intergenic
GCCGAATTGAATCTCGAATG+AGG 0.615938 8.3:+8250556 None:intergenic
TGAGAGCTAGTGTTTCTTCG+GGG 0.619667 8.3:+8250773 None:intergenic
ATCTCAACAGCGAATTGTGG+AGG 0.620844 8.3:-8250002 MS.gene036569:CDS
GAACTACCATACTCCACCAA+TGG 0.622768 8.3:-8250206 MS.gene036569:CDS
AGAGTACCATTTGTCACGGT+AGG 0.626402 8.3:+8250744 None:intergenic
ATTCGAGATTCAATTCGGCG+TGG 0.632019 8.3:-8250552 MS.gene036569:CDS
AATTGTGGAGGCATTCGCCA+AGG 0.638281 8.3:-8249990 MS.gene036569:CDS
GGAGCAAAAGAAGATGGAGA+TGG 0.642155 8.3:-8250086 MS.gene036569:CDS
CAAGAGAGTACCATTTGTCA+CGG 0.645825 8.3:+8250740 None:intergenic
GGAGAGAGATCCATTGACTG+AGG 0.657971 8.3:-8250152 MS.gene036569:CDS
GAGTGGCTTTGAGATTACCG+CGG 0.712719 8.3:+8250716 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATAAGTTGTATAAGAA+CGG - chr8.3:8250441-8250460 MS.gene036569:CDS 20.0%
!! CTGTATTTAGATATCAAAAA+CGG - chr8.3:8250396-8250415 MS.gene036569:CDS 20.0%
!! TCATTGTTTTCAGATTTAAC+AGG + chr8.3:8250330-8250349 None:intergenic 25.0%
!!! TCAGAAGAAAATTTTGATTC+AGG + chr8.3:8250555-8250574 None:intergenic 25.0%
AAGTTGTATAAGAACGGTTT+CGG - chr8.3:8250447-8250466 MS.gene036569:CDS 30.0%
GATGGAATTCTCTTATTGAT+AGG + chr8.3:8250894-8250913 None:intergenic 30.0%
GTATCTGCGATTAAATTGTT+GGG - chr8.3:8250687-8250706 MS.gene036569:CDS 30.0%
TCTGATTCAGATTAGGATTA+GGG + chr8.3:8250590-8250609 None:intergenic 30.0%
TGTATCTGCGATTAAATTGT+TGG - chr8.3:8250686-8250705 MS.gene036569:CDS 30.0%
TTAGATATCAAAAACGGTCA+TGG - chr8.3:8250402-8250421 MS.gene036569:CDS 30.0%
TTCTGATTCAGATTAGGATT+AGG + chr8.3:8250591-8250610 None:intergenic 30.0%
! TTTTCAGATTTAACAGGAGA+AGG + chr8.3:8250324-8250343 None:intergenic 30.0%
CGATTAAATTGTTGGGTGAT+GGG - chr8.3:8250694-8250713 MS.gene036569:CDS 35.0%
CTTTAAGCTTATGGATTCCA+TGG - chr8.3:8250290-8250309 MS.gene036569:CDS 35.0%
TCCTCATTCGAGATTCAATT+CGG - chr8.3:8250257-8250276 MS.gene036569:CDS 35.0%
! ACTGTTGTTATTGCTGTCAT+CGG + chr8.3:8250856-8250875 None:intergenic 35.0%
! ATTTAGGATTAGGTATCCAC+CGG - chr8.3:8250524-8250543 MS.gene036569:CDS 35.0%
!! TGGTAGTTCTGATTCAGATT+AGG + chr8.3:8250597-8250616 None:intergenic 35.0%
!!! AATTTTGATTCAGGTTGTGC+CGG + chr8.3:8250546-8250565 None:intergenic 35.0%
ATGAGAGCTAGTGTTTCTTC+GGG + chr8.3:8250045-8250064 None:intergenic 40.0%
CTTATGGATTCCATGGAGAA+AGG - chr8.3:8250297-8250316 MS.gene036569:CDS 40.0%
GAGAATGGAGCAAAAGAAGA+TGG - chr8.3:8250722-8250741 MS.gene036569:CDS 40.0%
GATGAGAGCTAGTGTTTCTT+CGG + chr8.3:8250046-8250065 None:intergenic 40.0%
GCGATTAAATTGTTGGGTGA+TGG - chr8.3:8250693-8250712 MS.gene036569:CDS 40.0%
GGAGATTGAAACTATGAGGA+TGG - chr8.3:8250755-8250774 MS.gene036569:CDS 40.0%
GTGGGTTCACTTTAAGCTTA+TGG - chr8.3:8250281-8250300 MS.gene036569:CDS 40.0%
TGAAACTATGAGGATGGAGA+TGG - chr8.3:8250761-8250780 MS.gene036569:CDS 40.0%
TGAATCTCAACAGCGAATTG+TGG - chr8.3:8250809-8250828 MS.gene036569:CDS 40.0%
TTGTATAAGAACGGTTTCGG+TGG - chr8.3:8250450-8250469 MS.gene036569:CDS 40.0%
! CATTGAACAGGAGTTTTCGA+CGG + chr8.3:8250174-8250193 None:intergenic 40.0%
! TTGGTGGAGGATTTAGGATT+AGG - chr8.3:8250514-8250533 MS.gene036569:CDS 40.0%
! TTTTCGACGGAGTAACGTTA+GGG + chr8.3:8250161-8250180 None:intergenic 40.0%
!! CAAGAGAGTACCATTTGTCA+CGG + chr8.3:8250077-8250096 None:intergenic 40.0%
AAAAGAAGATGGAGATGGCG+AGG - chr8.3:8250733-8250752 MS.gene036569:CDS 45.0%
AAAGAAGATGGAGATGGCGA+GGG - chr8.3:8250734-8250753 MS.gene036569:CDS 45.0%
ATCTCAACAGCGAATTGTGG+AGG - chr8.3:8250812-8250831 MS.gene036569:CDS 45.0%
ATTCGAGATTCAATTCGGCG+TGG - chr8.3:8250262-8250281 MS.gene036569:CDS 45.0%
CGAGGGAGATTGAAACTATG+AGG - chr8.3:8250751-8250770 MS.gene036569:CDS 45.0%
CGTGACAAATGGTACTCTCT+TGG - chr8.3:8250075-8250094 MS.gene036569:CDS 45.0%
GAACTACCATACTCCACCAA+TGG - chr8.3:8250608-8250627 MS.gene036569:CDS 45.0%
GAAGCTTCTCCATCTTGTGA+CGG + chr8.3:8250197-8250216 None:intergenic 45.0%
GCAGATACAACCTCAGTCAA+TGG + chr8.3:8250675-8250694 None:intergenic 45.0%
GCCGAATTGAATCTCGAATG+AGG + chr8.3:8250261-8250280 None:intergenic 45.0%
GGAGCAAAAGAAGATGGAGA+TGG - chr8.3:8250728-8250747 MS.gene036569:CDS 45.0%
GTAATCTCAAAGCCACTCAC+TGG - chr8.3:8250103-8250122 MS.gene036569:CDS 45.0%
GTCACAAGATGGAGAAGCTT+CGG - chr8.3:8250196-8250215 MS.gene036569:CDS 45.0%
TATAAGAACGGTTTCGGTGG+CGG - chr8.3:8250453-8250472 MS.gene036569:CDS 45.0%
TGAGAGCTAGTGTTTCTTCG+GGG + chr8.3:8250044-8250063 None:intergenic 45.0%
TGTTCAATGCCGTCACAAGA+TGG - chr8.3:8250185-8250204 MS.gene036569:CDS 45.0%
TTCGAGATTCAATTCGGCGT+GGG - chr8.3:8250263-8250282 MS.gene036569:CDS 45.0%
! AGAGTACCATTTGTCACGGT+AGG + chr8.3:8250073-8250092 None:intergenic 45.0%
! ATCTTGTGACGGCATTGAAC+AGG + chr8.3:8250186-8250205 None:intergenic 45.0%
! GTTTTCGACGGAGTAACGTT+AGG + chr8.3:8250162-8250181 None:intergenic 45.0%
AAATGGTACTCTCTTGGCCG+CGG - chr8.3:8250081-8250100 MS.gene036569:CDS 50.0%
AGGAGAAGGACCTTTCTCCA+TGG + chr8.3:8250310-8250329 None:intergenic 50.0%
CCATACTCCACCAATGGCAA+CGG - chr8.3:8250614-8250633 MS.gene036569:CDS 50.0%
GAAGGGATTGGGGAACAAGA+GGG - chr8.3:8250641-8250660 MS.gene036569:CDS 50.0%
GAGAGCTAGTGTTTCTTCGG+GGG + chr8.3:8250043-8250062 None:intergenic 50.0%
TCGACTCCTACCGTGACAAA+TGG - chr8.3:8250064-8250083 MS.gene036569:CDS 50.0%
! GGAGAGAGATCCATTGACTG+AGG - chr8.3:8250662-8250681 MS.gene036569:CDS 50.0%
!! AATTGTGGAGGCATTCGCCA+AGG - chr8.3:8250824-8250843 MS.gene036569:CDS 50.0%
!! GAGTGGCTTTGAGATTACCG+CGG + chr8.3:8250101-8250120 None:intergenic 50.0%
!! GGGTGATGGGTTTGTGAGAA+TGG - chr8.3:8250707-8250726 MS.gene036569:CDS 50.0%
!! GTGGTGTTGGTGGAGGATTT+AGG - chr8.3:8250508-8250527 MS.gene036569:CDS 50.0%
!! TTTAGTGGTGGTGGTAGTGG+TGG - chr8.3:8250489-8250508 MS.gene036569:CDS 50.0%
!! TTTGATTCAGGTTGTGCCGG+TGG + chr8.3:8250543-8250562 None:intergenic 50.0%
!!! ATCGGTGGTGGTTTTAGTGG+TGG - chr8.3:8250477-8250496 MS.gene036569:CDS 50.0%
!!! GGAATCGGTGGTGGTTTTAG+TGG - chr8.3:8250474-8250493 MS.gene036569:CDS 50.0%
!!! GGTTTTAGTGGTGGTGGTAG+TGG - chr8.3:8250486-8250505 MS.gene036569:CDS 50.0%
AGCGACTTCTTGCCAGTGAG+TGG + chr8.3:8250118-8250137 None:intergenic 55.0%
AGGAGTGGTGGTTGAAGGAG+GGG + chr8.3:8249917-8249936 None:intergenic 55.0%
CCGTTGCCATTGGTGGAGTA+TGG + chr8.3:8250617-8250636 None:intergenic 55.0%
CGAAGGGATTGGGGAACAAG+AGG - chr8.3:8250640-8250659 MS.gene036569:CDS 55.0%
CTTGTTCCCCAATCCCTTCG+TGG + chr8.3:8250640-8250659 None:intergenic 55.0%
GAGGAGTGGTGGTTGAAGGA+GGG + chr8.3:8249918-8249937 None:intergenic 55.0%
GCTGTCATCGGAAACTGCCT+TGG + chr8.3:8250844-8250863 None:intergenic 55.0%
!! AACGGTTTCGGTGGCGGAAT+CGG - chr8.3:8250459-8250478 MS.gene036569:CDS 55.0%
!!! GGTGGTGGTTTTAGTGGTGG+TGG - chr8.3:8250480-8250499 MS.gene036569:CDS 55.0%
ACCAATGGCAACGGCCACGA+AGG - chr8.3:8250623-8250642 MS.gene036569:CDS 60.0%
ATCGGAGAGAGGAGGAGGAG+TGG + chr8.3:8249932-8249951 None:intergenic 60.0%
CAACGGCCACGAAGGGATTG+GGG - chr8.3:8250631-8250650 MS.gene036569:CDS 60.0%
CCAATGGCAACGGCCACGAA+GGG - chr8.3:8250624-8250643 MS.gene036569:CDS 60.0%
GCAACGGCCACGAAGGGATT+GGG - chr8.3:8250630-8250649 MS.gene036569:CDS 60.0%
GGAGGAGGAGTGGTGGTTGA+AGG + chr8.3:8249922-8249941 None:intergenic 60.0%
GGAGGAGTGGTGGTTGAAGG+AGG + chr8.3:8249919-8249938 None:intergenic 60.0%
GTGGGATAGGGAGTGGAGCA+GGG + chr8.3:8249987-8250006 None:intergenic 60.0%
GTTTCTTCGGGGGACCAGCA+GGG + chr8.3:8250033-8250052 None:intergenic 60.0%
TGTTTCTTCGGGGGACCAGC+AGG + chr8.3:8250034-8250053 None:intergenic 60.0%
TTCGTGGCCGTTGCCATTGG+TGG + chr8.3:8250624-8250643 None:intergenic 60.0%
!! GGTAGTGGTGGTGTTGGTGG+AGG - chr8.3:8250501-8250520 MS.gene036569:CDS 60.0%
!! GGTGGTAGTGGTGGTGTTGG+TGG - chr8.3:8250498-8250517 MS.gene036569:CDS 60.0%
!! GGTGGTGGTAGTGGTGGTGT+TGG - chr8.3:8250495-8250514 MS.gene036569:CDS 60.0%
ACCAGCAGGGAGGAGGGAGA+CGG + chr8.3:8250020-8250039 None:intergenic 65.0%
AGCAGGGAGAGCGAGAGGGA+GGG + chr8.3:8249971-8249990 None:intergenic 65.0%
AGTGGAGCAGGGAGAGCGAG+AGG + chr8.3:8249976-8249995 None:intergenic 65.0%
CCCTTCGTGGCCGTTGCCAT+TGG + chr8.3:8250627-8250646 None:intergenic 65.0%
GGAGAGAGGAGGAGGAGTGG+TGG + chr8.3:8249929-8249948 None:intergenic 65.0%
GGCAACGGCCACGAAGGGAT+TGG - chr8.3:8250629-8250648 MS.gene036569:CDS 65.0%
GGTGGGATAGGGAGTGGAGC+AGG + chr8.3:8249988-8250007 None:intergenic 65.0%
GTGGAGCAGGGAGAGCGAGA+GGG + chr8.3:8249975-8249994 None:intergenic 65.0%
GTGGAGGGTGGGATAGGGAG+TGG + chr8.3:8249994-8250013 None:intergenic 65.0%
!! GGTTTCGGTGGCGGAATCGG+TGG - chr8.3:8250462-8250481 MS.gene036569:CDS 65.0%
!! TTCGGTGGCGGAATCGGTGG+TGG - chr8.3:8250465-8250484 MS.gene036569:CDS 65.0%
AGCAGGGAGGAGGGAGACGG+CGG + chr8.3:8250017-8250036 None:intergenic 70.0%
CAGGGAGAGCGAGAGGGAGG+GGG + chr8.3:8249969-8249988 None:intergenic 70.0%
GAGAGCGAGAGGGAGGGGGA+CGG + chr8.3:8249965-8249984 None:intergenic 70.0%
GAGCAGGGAGAGCGAGAGGG+AGG + chr8.3:8249972-8249991 None:intergenic 70.0%
GCAGGGAGAGCGAGAGGGAG+GGG + chr8.3:8249970-8249989 None:intergenic 70.0%
GGCGGGTGGAGGGTGGGATA+GGG + chr8.3:8249999-8250018 None:intergenic 70.0%
GGGGGATCGGAGAGAGGAGG+AGG + chr8.3:8249937-8249956 None:intergenic 70.0%
GTGGGGGGATCGGAGAGAGG+AGG + chr8.3:8249940-8249959 None:intergenic 70.0%
TCTTCGGGGGACCAGCAGGG+AGG + chr8.3:8250030-8250049 None:intergenic 70.0%
AGAGGGAGGGGGACGGCGGT+GGG + chr8.3:8249958-8249977 None:intergenic 75.0%
AGCGAGAGGGAGGGGGACGG+CGG + chr8.3:8249962-8249981 None:intergenic 75.0%
AGGAGGGAGACGGCGGGTGG+AGG + chr8.3:8250010-8250029 None:intergenic 75.0%
CGGCGGGTGGAGGGTGGGAT+AGG + chr8.3:8250000-8250019 None:intergenic 75.0%
CGGGGGACCAGCAGGGAGGA+GGG + chr8.3:8250026-8250045 None:intergenic 75.0%
GCAGGGAGGAGGGAGACGGC+GGG + chr8.3:8250016-8250035 None:intergenic 75.0%
GCCGTCTCCCTCCTCCCTGC+TGG - chr8.3:8250016-8250035 MS.gene036569:CDS 75.0%
GCGGTGGGGGGATCGGAGAG+AGG + chr8.3:8249943-8249962 None:intergenic 75.0%
GGAGACGGCGGGTGGAGGGT+GGG + chr8.3:8250005-8250024 None:intergenic 75.0%
GGAGGGAGACGGCGGGTGGA+GGG + chr8.3:8250009-8250028 None:intergenic 75.0%
TCGGGGGACCAGCAGGGAGG+AGG + chr8.3:8250027-8250046 None:intergenic 75.0%
! AGGGAGGGGGACGGCGGTGG+GGG + chr8.3:8249956-8249975 None:intergenic 80.0%
! GAGAGGGAGGGGGACGGCGG+TGG + chr8.3:8249959-8249978 None:intergenic 80.0%
! GAGGGAGGGGGACGGCGGTG+GGG + chr8.3:8249957-8249976 None:intergenic 80.0%
! GGGAGACGGCGGGTGGAGGG+TGG + chr8.3:8250006-8250025 None:intergenic 80.0%
! GGGAGGAGGGAGACGGCGGG+TGG + chr8.3:8250013-8250032 None:intergenic 80.0%
! GGGGACGGCGGTGGGGGGAT+CGG + chr8.3:8249950-8249969 None:intergenic 80.0%
! GGGAGGGGGACGGCGGTGGG+GGG + chr8.3:8249955-8249974 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 8249907 8250929 8249907 ID=MS.gene036569
chr8.3 mRNA 8249907 8250929 8249907 ID=MS.gene036569.t1;Parent=MS.gene036569
chr8.3 exon 8249907 8250929 8249907 ID=MS.gene036569.t1.exon1;Parent=MS.gene036569.t1
chr8.3 CDS 8249907 8250929 8249907 ID=cds.MS.gene036569.t1;Parent=MS.gene036569.t1
Gene Sequence

>MS.gene036569

ATGTCTTCCCCTCCTTCAACCACCACTCCTCCTCCTCTCTCCGATCCCCCCACCGCCGTCCCCCTCCCTCTCGCTCTCCCTGCTCCACTCCCTATCCCACCCTCCACCCGCCGTCTCCCTCCTCCCTGCTGGTCCCCCGAAGAAACACTAGCTCTCATCGACTCCTACCGTGACAAATGGTACTCTCTTGGCCGCGGTAATCTCAAAGCCACTCACTGGCAAGAAGTCGCTGACGCTGTTTCAAATCGTTGCCCTAACGTTACTCCGTCGAAAACTCCTGTTCAATGCCGTCACAAGATGGAGAAGCTTCGGAAACGTTATCGTACTGAGATTCAACGTGCTCGCTCGCTTCCTCATTCGAGATTCAATTCGGCGTGGGTTCACTTTAAGCTTATGGATTCCATGGAGAAAGGTCCTTCTCCTGTTAAATCTGAAAACAATGATTCTGATAGTGCTGATGATGATGAAGATGAAGATCATGATCAAAATCTGTATTTAGATATCAAAAACGGTCATGGATCTAATACTAGAAGTATCAATAAGTTGTATAAGAACGGTTTCGGTGGCGGAATCGGTGGTGGTTTTAGTGGTGGTGGTAGTGGTGGTGTTGGTGGAGGATTTAGGATTAGGTATCCACCGGCACAACCTGAATCAAAATTTTCTTCTGATCAGAAATATAACCCTAATCCTAATCTGAATCAGAACTACCATACTCCACCAATGGCAACGGCCACGAAGGGATTGGGGAACAAGAGGGAGAGAGATCCATTGACTGAGGTTGTATCTGCGATTAAATTGTTGGGTGATGGGTTTGTGAGAATGGAGCAAAAGAAGATGGAGATGGCGAGGGAGATTGAAACTATGAGGATGGAGATGGAAATGAAACGTACTGAGATGATTCTTGAATCTCAACAGCGAATTGTGGAGGCATTCGCCAAGGCAGTTTCCGATGACAGCAATAACAACAGTAACAAGATGATGAAGCCTATCAATAAGAGAATTCCATCACCACAACAATCATAA
Protein sequence

>MS.gene036569.t1

MSSPPSTTTPPPLSDPPTAVPLPLALPAPLPIPPSTRRLPPPCWSPEETLALIDSYRDKWYSLGRGNLKATHWQEVADAVSNRCPNVTPSKTPVQCRHKMEKLRKRYRTEIQRARSLPHSRFNSAWVHFKLMDSMEKGPSPVKSENNDSDSADDDEDEDHDQNLYLDIKNGHGSNTRSINKLYKNGFGGGIGGGFSGGGSGGVGGGFRIRYPPAQPESKFSSDQKYNPNPNLNQNYHTPPMATATKGLGNKRERDPLTEVVSAIKLLGDGFVRMEQKKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSDDSNNNSNKMMKPINKRIPSPQQS