AlfalfaGEDB | MS.gene036749

M. sativa cultivar XinJiangDaYe / MS.gene036749

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036749.t1	XP_024636802.1	64.1	117	42	0	1	117	64	180	4.90E-27	130.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036749.t1	A0A396IJH9	64.1	117	42	0	1	117	64	180	3.5e-27	130.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene036749.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036749.t1	MTR_3g084720	64.000	75	26	1	44	117	106	180	5.23e-26	97.4
MS.gene036749.t1	MTR_6g465230	67.857	56	18	0	1	56	163	218	1.13e-12	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036749.t1	AT2G18490	59.649	57	23	0	58	114	155	211	1.66e-20	83.6
MS.gene036749.t1	AT2G18490	54.688	64	29	0	51	114	198	261	2.40e-20	84.0
MS.gene036749.t1	AT5G22990	61.905	63	23	1	53	114	227	289	2.26e-19	81.6
MS.gene036749.t1	AT2G15740	56.897	58	25	0	57	114	229	286	5.37e-19	80.5
MS.gene036749.t1	AT5G42640	56.140	57	25	0	58	114	229	285	8.55e-19	79.7

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Find 16 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAAATTGTTGATGA+TGG	0.494936	8.3:+12901158	MS.gene036749:CDS
AAAGTGAAGACGAGCCTCCA+AGG	0.567472	8.3:-12901046	None:intergenic
AACAATATTGTTGCTACTAA+TGG	0.346446	8.3:+12901092	MS.gene036749:CDS
ACAATATTGTTTACCTCAGA+TGG	0.468933	8.3:-12901080	None:intergenic
ATATTGTTTACCTCAGATGG+CGG	0.654185	8.3:-12901077	None:intergenic
CTAATAATATCAACATGAAG+CGG	0.561821	8.3:+12901132	MS.gene036749:CDS
CTACTAATGGTGATGAAATC+CGG	0.385370	8.3:+12901105	MS.gene036749:CDS
GACGAGCCTCCAAGGAGATC+AGG	0.460583	8.3:-12901038	None:intergenic
GAGATCAGGATGAGCATAAG+CGG	0.608512	8.3:-12901024	None:intergenic
GCTAGTACTTTGTTACACTT+TGG	0.466837	8.3:-12901227	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAATATTGTTTACCTCAGA+TGG	-	chr8.3:12901083-12901102	None:intergenic	30.0%
AGTCTACCACACAATAAAAA+TGG	+	chr8.3:12901191-12901210	MS.gene036749:CDS	30.0%
GAAAAAAGAGATACAAGTCT+AGG	+	chr8.3:12901312-12901331	MS.gene036749:CDS	30.0%
TGTTGATATTATTAGAAGCC+CGG	-	chr8.3:12901127-12901146	None:intergenic	30.0%
ATATTGTTTACCTCAGATGG+CGG	-	chr8.3:12901080-12901099	None:intergenic	35.0%
GCTAGTACTTTGTTACACTT+TGG	-	chr8.3:12901230-12901249	None:intergenic	35.0%
TTACACTTTGGACACGTATA+CGG	-	chr8.3:12901218-12901237	None:intergenic	35.0%
GAGATCAGGATGAGCATAAG+CGG	-	chr8.3:12901027-12901046	None:intergenic	45.0%
TATGCTCATCCTGATCTCCT+TGG	+	chr8.3:12901029-12901048	MS.gene036749:CDS	45.0%
AAAGTGAAGACGAGCCTCCA+AGG	-	chr8.3:12901049-12901068	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	12901005	12901358	12901005	ID=MS.gene036749
chr8.3	mRNA	12901005	12901358	12901005	ID=MS.gene036749.t1;Parent=MS.gene036749
chr8.3	exon	12901005	12901358	12901005	ID=MS.gene036749.t1.exon1;Parent=MS.gene036749.t1
chr8.3	CDS	12901005	12901358	12901005	ID=cds.MS.gene036749.t1;Parent=MS.gene036749.t1

Gene Sequence	>MS.gene036749 ATGGTGTTGAATACTTCTTCCGCTTATGCTCATCCTGATCTCCTTGGAGGCTCGTCTTCACTTTCACAACAACCGCCATCTGAGGTAAACAATATTGTTGCTACTAATGGTGATGAAATCCGGGCTTCTAATAATATCAACATGAAGCGGAAAAAAGAAGAAATTGTTGATGATGGTAGAATCCACAGTCTACCACACAATAAAAATGGACCGTATACGTGTCCAAAGTGTAACAAAGTACTAGCAACATCACAAAAAATTGCTAGTCATGCATCAAAACACTACAAGTCTGAAAGTGAAGAAGAGAGAAAAAAGAGATACAAGTCTAGGATTCGAAAGAGACCAGATCTTTGA
Protein sequence	>MS.gene036749.t1 MVLNTSSAYAHPDLLGGSSSLSQQPPSEVNNIVATNGDEIRASNNINMKRKKEEIVDDGRIHSLPHNKNGPYTCPKCNKVLATSQKIASHASKHYKSESEEERKKRYKSRIRKRPDL