Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036755.t1 | RHN63957.1 | 95.8 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 3.40E-99 | 370.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036755.t1 | Q8GW46 | 75.8 | 165 | 34 | 2 | 8 | 172 | 5 | 163 | 8.1e-65 | 248.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036755.t1 | A0A396IM32 | 95.8 | 191 | 6 | 1 | 1 | 189 | 1 | 191 | 2.5e-99 | 370.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene036755.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036755.t1 | MTR_4g114730 | 95.288 | 191 | 7 | 1 | 1 | 189 | 1 | 191 | 5.41e-136 | 378 |
| MS.gene036755.t1 | MTR_2g087740 | 56.667 | 180 | 67 | 4 | 5 | 173 | 2 | 181 | 4.45e-60 | 186 |
| MS.gene036755.t1 | MTR_4g025900 | 53.403 | 191 | 63 | 4 | 14 | 184 | 25 | 209 | 2.64e-54 | 172 |
| MS.gene036755.t1 | MTR_4g050300 | 56.000 | 175 | 61 | 6 | 5 | 173 | 2 | 166 | 1.27e-52 | 166 |
| MS.gene036755.t1 | MTR_4g101660 | 54.971 | 171 | 59 | 4 | 8 | 163 | 14 | 181 | 2.31e-50 | 162 |
| MS.gene036755.t1 | MTR_5g034030 | 49.686 | 159 | 58 | 4 | 12 | 156 | 12 | 162 | 5.58e-45 | 148 |
| MS.gene036755.t1 | MTR_5g046230 | 41.875 | 160 | 72 | 3 | 5 | 155 | 8 | 155 | 1.10e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036755.t1 | AT2G26580 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 6.88e-88 | 255 |
| MS.gene036755.t1 | AT2G26580 | 75.301 | 166 | 35 | 2 | 7 | 172 | 4 | 163 | 6.88e-88 | 255 |
| MS.gene036755.t1 | AT1G08465 | 53.631 | 179 | 60 | 5 | 5 | 171 | 2 | 169 | 5.25e-56 | 175 |
| MS.gene036755.t1 | AT2G45190 | 54.802 | 177 | 63 | 6 | 4 | 163 | 14 | 190 | 2.23e-54 | 172 |
| MS.gene036755.t1 | AT4G00180 | 50.811 | 185 | 57 | 4 | 12 | 165 | 23 | 204 | 1.41e-47 | 155 |
| MS.gene036755.t1 | AT4G00180 | 48.864 | 176 | 56 | 4 | 21 | 165 | 1 | 173 | 2.75e-39 | 133 |
| MS.gene036755.t1 | AT1G23420 | 47.205 | 161 | 71 | 3 | 13 | 159 | 20 | 180 | 1.01e-38 | 132 |
| MS.gene036755.t1 | AT1G23420 | 47.205 | 161 | 71 | 3 | 13 | 159 | 51 | 211 | 2.96e-38 | 132 |
| MS.gene036755.t1 | AT2G45190 | 92.982 | 57 | 4 | 0 | 107 | 163 | 70 | 126 | 4.29e-34 | 119 |
| MS.gene036755.t1 | AT1G69180 | 42.069 | 145 | 78 | 2 | 11 | 155 | 18 | 156 | 3.92e-32 | 114 |
Find 38 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATCCTATCGTTGCATT+TGG | 0.296610 | 8.3:-13021507 | None:intergenic |
| GCTTCTCTGTGACTGATATC+AGG | 0.363234 | 8.3:-13022017 | None:intergenic |
| GCAATCCTATCGTTGCATTT+GGG | 0.399881 | 8.3:-13021506 | None:intergenic |
| ACTGTCATGGCAAGATGTTC+AGG | 0.423195 | 8.3:+13020209 | MS.gene036755:CDS |
| GTGGTCACTGCACAAATCTA+TGG | 0.424333 | 8.3:+13020157 | MS.gene036755:CDS |
| AGGTACACGTTGCCTCTTCT+CGG | 0.458670 | 8.3:-13021828 | None:intergenic |
| ATCAGCCCAAAATGAATATG+AGG | 0.476928 | 8.3:-13022158 | None:intergenic |
| CACCCATGTTACTGAGGAAA+GGG | 0.483814 | 8.3:+13021547 | MS.gene036755:CDS |
| GAGCAACAATCAAGCTAAGA+TGG | 0.499438 | 8.3:+13022187 | MS.gene036755:CDS |
| TCCTCAGTAACATGGGTGGT+TGG | 0.501150 | 8.3:-13021542 | None:intergenic |
| ACTGCATGAATCCAGAGTAT+AGG | 0.501971 | 8.3:+13021465 | MS.gene036755:CDS |
| GGTACACGTTGCCTCTTCTC+GGG | 0.503039 | 8.3:-13021827 | None:intergenic |
| CAACCCTTTCCTCAGTAACA+TGG | 0.504380 | 8.3:-13021550 | None:intergenic |
| TGAGAAGCGTTTGATGTCTA+CGG | 0.515736 | 8.3:+13022318 | MS.gene036755:CDS |
| ATGTAGCAGAGTTGTTCAGC+AGG | 0.519727 | 8.3:-13019062 | None:intergenic |
| CCTATCGTTGCATTTGGGAG+TGG | 0.533061 | 8.3:-13021501 | None:intergenic |
| ACAATATTGCAAAAGTTGCA+AGG | 0.540036 | 8.3:-13019086 | None:intergenic |
| AATTTCCAGCTCCCGAGAAG+AGG | 0.540719 | 8.3:+13021816 | MS.gene036755:intron |
| AAATCTATGGTCTGTAAACA+TGG | 0.552321 | 8.3:+13020170 | MS.gene036755:CDS |
| CCGCGTTTCAGTCACTGTCA+TGG | 0.556178 | 8.3:+13020196 | MS.gene036755:CDS |
| TCTGGATTCATGCAGTGGCT+AGG | 0.562771 | 8.3:-13021458 | None:intergenic |
| CTAGTTCGAATCCTATACTC+TGG | 0.567724 | 8.3:-13021476 | None:intergenic |
| GGAAGAGATTCAGAGGATCA+AGG | 0.576711 | 8.3:+13021986 | MS.gene036755:CDS |
| CAATATTGCAAAAGTTGCAA+GGG | 0.579397 | 8.3:-13019085 | None:intergenic |
| CCACCCATGTTACTGAGGAA+AGG | 0.581614 | 8.3:+13021546 | MS.gene036755:CDS |
| ATGAACTGATTATAAGCAGA+AGG | 0.586762 | 8.3:-13021848 | None:intergenic |
| CCACTCCCAAATGCAACGAT+AGG | 0.592244 | 8.3:+13021501 | MS.gene036755:CDS |
| AGACATGTCTAGCTGTAGCA+TGG | 0.594915 | 8.3:+13019031 | None:intergenic |
| ATTTCAAACAAGCTACTGCA+TGG | 0.595371 | 8.3:-13020120 | None:intergenic |
| TATGCAGGGAAGAGATTCAG+AGG | 0.621557 | 8.3:+13021979 | MS.gene036755:intron |
| AACCCTTTCCTCAGTAACAT+GGG | 0.626838 | 8.3:-13021549 | None:intergenic |
| TATACTCTGGATTCATGCAG+TGG | 0.629931 | 8.3:-13021463 | None:intergenic |
| TGTGCAGTGACCACATCGAA+CGG | 0.632060 | 8.3:-13020148 | None:intergenic |
| ACCAACCACCCATGTTACTG+AGG | 0.669098 | 8.3:+13021541 | MS.gene036755:CDS |
| GAAATAGTGACCGTTCGATG+TGG | 0.670282 | 8.3:+13020138 | MS.gene036755:CDS |
| CCTTTCCTCAGTAACATGGG+TGG | 0.674444 | 8.3:-13021546 | None:intergenic |
| CCATGACAGTGACTGAAACG+CGG | 0.691630 | 8.3:-13020196 | None:intergenic |
| TGACAGTGACTGAAACGCGG+CGG | 0.753574 | 8.3:-13020193 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGATTGAAAAATTAAAT+TGG | - | chr8.3:13022235-13022254 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTTATTTTTTAG+TGG | + | chr8.3:13022126-13022145 | MS.gene036755:intron | 10.0% |
| !!! | TGATTATTTTTATTATATTC+AGG | + | chr8.3:13022291-13022310 | MS.gene036755:intron | 10.0% |
| !!! | TTATTTCTTTATTTTTTAGT+GGG | + | chr8.3:13022127-13022146 | MS.gene036755:intron | 10.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr8.3:13020363-13020382 | MS.gene036755:intron | 15.0% |
| !! | TAAACAAGAGAAAATTAATT+AGG | - | chr8.3:13019802-13019821 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr8.3:13020362-13020381 | MS.gene036755:intron | 15.0% |
| !! | TTTAAATAGATAGGAAAAAA+AGG | - | chr8.3:13021612-13021631 | None:intergenic | 15.0% |
| !!! | CATAATTTTATATATATGCA+GGG | + | chr8.3:13021965-13021984 | MS.gene036755:intron | 15.0% |
| !!! | TCATAATTTTATATATATGC+AGG | + | chr8.3:13021964-13021983 | MS.gene036755:intron | 15.0% |
| !!! | TTTTTATTTTAATTGCAAGA+AGG | + | chr8.3:13019213-13019232 | MS.gene036755:intron | 15.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr8.3:13020322-13020341 | MS.gene036755:intron | 20.0% |
| !! | AATTTAGAAAATAAACTACG+TGG | - | chr8.3:13021714-13021733 | None:intergenic | 20.0% |
| !! | ATAATTAATTACTACTAGCT+AGG | - | chr8.3:13020993-13021012 | None:intergenic | 20.0% |
| !! | ATCAATGAAACAATAAAGTA+AGG | - | chr8.3:13021426-13021445 | None:intergenic | 20.0% |
| !! | TAATTAATTACTACTAGCTA+GGG | - | chr8.3:13020992-13021011 | None:intergenic | 20.0% |
| !! | TGTTTAAACTTAAACATACA+AGG | + | chr8.3:13019816-13019835 | MS.gene036755:intron | 20.0% |
| !!! | AGTTTTGATGATAAACATAA+TGG | + | chr8.3:13019657-13019676 | MS.gene036755:intron | 20.0% |
| !!! | ATATACTTGATAGTTTTCTT+TGG | + | chr8.3:13019257-13019276 | MS.gene036755:intron | 20.0% |
| !!! | ATATTTTAATTCTCTCTTTC+TGG | + | chr8.3:13019412-13019431 | MS.gene036755:intron | 20.0% |
| !!! | ATTTTCCTCATATTCATTTT+GGG | + | chr8.3:13022153-13022172 | MS.gene036755:CDS | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr8.3:13020432-13020451 | MS.gene036755:intron | 20.0% |
| !!! | GTATATATAGTTGATTCAAT+TGG | + | chr8.3:13021910-13021929 | MS.gene036755:intron | 20.0% |
| !!! | TATCATTTAGTGATTTGTTT+TGG | - | chr8.3:13019702-13019721 | None:intergenic | 20.0% |
| !!! | TATTTTAATTCTCTCTTTCT+GGG | + | chr8.3:13019413-13019432 | MS.gene036755:intron | 20.0% |
| ! | AAAACTCCTTATAGTTTACT+TGG | + | chr8.3:13019137-13019156 | MS.gene036755:intron | 25.0% |
| ! | AATTAATTACTACTAGCTAG+GGG | - | chr8.3:13020991-13021010 | None:intergenic | 25.0% |
| ! | AGTCTATGAAAAAGGAAAAT+AGG | - | chr8.3:13020796-13020815 | None:intergenic | 25.0% |
| ! | ATGAAACAATAAAGTAAGGA+AGG | - | chr8.3:13021422-13021441 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr8.3:13020321-13020340 | MS.gene036755:intron | 25.0% |
| ! | GCTAGTTAGTAATTAATCAA+AGG | + | chr8.3:13020069-13020088 | MS.gene036755:intron | 25.0% |
| ! | TAGGAAAAGATCATATATCT+AGG | + | chr8.3:13020923-13020942 | MS.gene036755:intron | 25.0% |
| ! | TGAATGAATTCCTTTATACT+TGG | - | chr8.3:13019325-13019344 | None:intergenic | 25.0% |
| !! | AAAACATTTTCAGTATGGTT+TGG | - | chr8.3:13020846-13020865 | None:intergenic | 25.0% |
| !! | AAGAAAAGTGTGTAAATGAA+TGG | + | chr8.3:13020298-13020317 | MS.gene036755:intron | 25.0% |
| !! | AGAAAAGTGTGTAAATGAAT+GGG | + | chr8.3:13020299-13020318 | MS.gene036755:intron | 25.0% |
| !! | CATTTTCCTCATATTCATTT+TGG | + | chr8.3:13022152-13022171 | MS.gene036755:CDS | 25.0% |
| !! | TAAGCAAAACATTTTCAGTA+TGG | - | chr8.3:13020851-13020870 | None:intergenic | 25.0% |
| !! | TAGTATTTCTATGTTCGTTA+AGG | - | chr8.3:13021746-13021765 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | + | chr8.3:13020409-13020428 | MS.gene036755:intron | 25.0% |
| !!! | AAATAGGTTTGTTTTTATGG+CGG | - | chr8.3:13020780-13020799 | None:intergenic | 25.0% |
| !!! | ATTCTTTATTTTCTACCTCT+TGG | + | chr8.3:13019765-13019784 | MS.gene036755:intron | 25.0% |
| !!! | GATGTGGATTTTTTTTTTGT+GGG | + | chr8.3:13019934-13019953 | MS.gene036755:intron | 25.0% |
| !!! | GGAAAATAGGTTTGTTTTTA+TGG | - | chr8.3:13020783-13020802 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr8.3:13020431-13020450 | MS.gene036755:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | + | chr8.3:13020410-13020429 | MS.gene036755:intron | 25.0% |
| !!! | TGATGTGGATTTTTTTTTTG+TGG | + | chr8.3:13019933-13019952 | MS.gene036755:intron | 25.0% |
| !!! | TTGTTTCATTGATTTTCTTC+AGG | + | chr8.3:13021433-13021452 | MS.gene036755:intron | 25.0% |
| AAAACAAGGCATATAGAGAA+AGG | + | chr8.3:13019586-13019605 | MS.gene036755:intron | 30.0% | |
| AAAATAGATCTATCCTAGCT+AGG | + | chr8.3:13020538-13020557 | MS.gene036755:intron | 30.0% | |
| AAACAAGGCATATAGAGAAA+GGG | + | chr8.3:13019587-13019606 | MS.gene036755:intron | 30.0% | |
| AAATCTATGGTCTGTAAACA+TGG | + | chr8.3:13020170-13020189 | MS.gene036755:CDS | 30.0% | |
| AATTCATTCAGATCCTGAAA+AGG | + | chr8.3:13019335-13019354 | MS.gene036755:intron | 30.0% | |
| ACAATATTGCAAAAGTTGCA+AGG | - | chr8.3:13019089-13019108 | None:intergenic | 30.0% | |
| ATATATATGTAGCATGCAAG+AGG | - | chr8.3:13019176-13019195 | None:intergenic | 30.0% | |
| ATGAACTGATTATAAGCAGA+AGG | - | chr8.3:13021851-13021870 | None:intergenic | 30.0% | |
| ATTAATTACTACTAGCTAGG+GGG | - | chr8.3:13020990-13021009 | None:intergenic | 30.0% | |
| CAATATTGCAAAAGTTGCAA+GGG | - | chr8.3:13019088-13019107 | None:intergenic | 30.0% | |
| CTTTCTTTCAAGCTAAAACA+AGG | + | chr8.3:13019572-13019591 | MS.gene036755:intron | 30.0% | |
| GAAAGAAAGAGAAAGAGAAA+GGG | - | chr8.3:13019561-13019580 | None:intergenic | 30.0% | |
| GTGTACATATCCAAGTATAA+AGG | + | chr8.3:13019312-13019331 | MS.gene036755:intron | 30.0% | |
| TAAAGAATAGAGAAGAAGAG+AGG | - | chr8.3:13019753-13019772 | None:intergenic | 30.0% | |
| TCAGATCCAAGTAAACTATA+AGG | - | chr8.3:13019146-13019165 | None:intergenic | 30.0% | |
| TGAAAGAAAGAGAAAGAGAA+AGG | - | chr8.3:13019562-13019581 | None:intergenic | 30.0% | |
| ! | AAAATCGAAGTATCTTGGTT+TGG | + | chr8.3:13020621-13020640 | MS.gene036755:intron | 30.0% |
| ! | ATCACATTTCACACTTGTTA+TGG | - | chr8.3:13019917-13019936 | None:intergenic | 30.0% |
| ! | ATTTGATAACCTTGATGAGA+GGG | - | chr8.3:13019512-13019531 | None:intergenic | 30.0% |
| ! | CTTTTGCAATATTGTTCTTG+CGG | + | chr8.3:13019094-13019113 | MS.gene036755:CDS | 30.0% |
| ! | GAGAGTATATAGTAAACTCA+CGG | - | chr8.3:13021583-13021602 | None:intergenic | 30.0% |
| ! | TATTTGATAACCTTGATGAG+AGG | - | chr8.3:13019513-13019532 | None:intergenic | 30.0% |
| ! | TCTTTGAAAAAGAGTTGAGA+AGG | - | chr8.3:13019867-13019886 | None:intergenic | 30.0% |
| ! | TTGAGAAAATCGAAGTATCT+TGG | + | chr8.3:13020616-13020635 | MS.gene036755:intron | 30.0% |
| !! | CTTGTTAAGTTGGAAATACT+AGG | - | chr8.3:13021361-13021380 | None:intergenic | 30.0% |
| !! | TCACATTTCACACTTGTTAT+GGG | - | chr8.3:13019916-13019935 | None:intergenic | 30.0% |
| !! | TGATAGTTTTCTTTGGTCTT+TGG | + | chr8.3:13019264-13019283 | MS.gene036755:intron | 30.0% |
| !!! | AATCCTCATTTTTCAAGATC+AGG | + | chr8.3:13019889-13019908 | MS.gene036755:intron | 30.0% |
| AACAAGTGTGAAATGTGATG+TGG | + | chr8.3:13019918-13019937 | MS.gene036755:intron | 35.0% | |
| ACACACACACAAAAAGTCAA+CGG | - | chr8.3:13019995-13020014 | None:intergenic | 35.0% | |
| ACAGTTGTTGGTATGAATGA+AGG | - | chr8.3:13021187-13021206 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr8.3:13020445-13020464 | MS.gene036755:intron | 35.0% | |
| AGCTACAAAGCTAGTTAGTT+AGG | + | chr8.3:13020652-13020671 | MS.gene036755:intron | 35.0% | |
| AGTATATAGTAAACTCACGG+CGG | - | chr8.3:13021580-13021599 | None:intergenic | 35.0% | |
| ATCAATGCTTTGTACAGAGA+TGG | - | chr8.3:13021308-13021327 | None:intergenic | 35.0% | |
| ATCAGCCCAAAATGAATATG+AGG | - | chr8.3:13022161-13022180 | None:intergenic | 35.0% | |
| ATTTCAAACAAGCTACTGCA+TGG | - | chr8.3:13020123-13020142 | None:intergenic | 35.0% | |
| CATACCAACAACTGTCAATT+GGG | + | chr8.3:13021192-13021211 | MS.gene036755:intron | 35.0% | |
| TAAACTACGTGGCTATGATA+TGG | - | chr8.3:13021703-13021722 | None:intergenic | 35.0% | |
| TCATACCAACAACTGTCAAT+TGG | + | chr8.3:13021191-13021210 | MS.gene036755:intron | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr8.3:13020276-13020295 | None:intergenic | 35.0% | |
| TGTGTAAATGAATGGGAAAG+TGG | + | chr8.3:13020306-13020325 | MS.gene036755:intron | 35.0% | |
| TTCTGACGAGTCTATGAAAA+AGG | - | chr8.3:13020804-13020823 | None:intergenic | 35.0% | |
| TTGAAAAAGAGTTGAGAAGG+TGG | - | chr8.3:13019864-13019883 | None:intergenic | 35.0% | |
| ! | AAAGACTTTTGCCTTTGCTT+TGG | + | chr8.3:13020872-13020891 | MS.gene036755:intron | 35.0% |
| ! | AAGACTTTTGCCTTTGCTTT+GGG | + | chr8.3:13020873-13020892 | MS.gene036755:intron | 35.0% |
| ! | ACACATCAAATCAGTTCTGA+AGG | - | chr8.3:13020904-13020923 | None:intergenic | 35.0% |
| ! | ACAGTTCTGTCTTGTTAAGT+TGG | - | chr8.3:13021371-13021390 | None:intergenic | 35.0% |
| ! | TATTCATTTTGGGCTGATGT+TGG | + | chr8.3:13022163-13022182 | MS.gene036755:CDS | 35.0% |
| !! | AAGTATCTTGGTTTGGCTTT+GGG | + | chr8.3:13020628-13020647 | MS.gene036755:intron | 35.0% |
| !! | ATTTTCAGTATGGTTTGGCT+TGG | - | chr8.3:13020841-13020860 | None:intergenic | 35.0% |
| !! | TCAGAACTGATTTGATGTGT+AGG | + | chr8.3:13020904-13020923 | MS.gene036755:intron | 35.0% |
| !!! | ATTTTTGGTGTAGATCCCTA+AGG | + | chr8.3:13021161-13021180 | MS.gene036755:intron | 35.0% |
| AAAGTCATACCCTCTCATCA+AGG | + | chr8.3:13019500-13019519 | MS.gene036755:intron | 40.0% | |
| AACCCTTTCCTCAGTAACAT+GGG | - | chr8.3:13021552-13021571 | None:intergenic | 40.0% | |
| AATACACACACACACTCACA+TGG | + | chr8.3:13019529-13019548 | MS.gene036755:intron | 40.0% | |
| ACTGCATGAATCCAGAGTAT+AGG | + | chr8.3:13021465-13021484 | MS.gene036755:CDS | 40.0% | |
| ATCAAAACTAGCAAGCTCAG+TGG | - | chr8.3:13019646-13019665 | None:intergenic | 40.0% | |
| CAAAGTAGGTCACTTATACC+GGG | - | chr8.3:13020262-13020281 | None:intergenic | 40.0% | |
| CCAAAGTAGGTCACTTATAC+CGG | - | chr8.3:13020263-13020282 | None:intergenic | 40.0% | |
| CTAGTTCGAATCCTATACTC+TGG | - | chr8.3:13021479-13021498 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr8.3:13020446-13020465 | MS.gene036755:intron | 40.0% | |
| GAAATCAAAGAAGCCTAGCT+AGG | - | chr8.3:13020554-13020573 | None:intergenic | 40.0% | |
| GAAGGTAATACCCAAAGCAA+AGG | - | chr8.3:13020886-13020905 | None:intergenic | 40.0% | |
| GACTGCAAAAGAAAAGTCCA+GGG | - | chr8.3:13019474-13019493 | None:intergenic | 40.0% | |
| GAGCAACAATCAAGCTAAGA+TGG | + | chr8.3:13022187-13022206 | MS.gene036755:CDS | 40.0% | |
| GCAATCCTATCGTTGCATTT+GGG | - | chr8.3:13021509-13021528 | None:intergenic | 40.0% | |
| GGACCTGATCTTGAAAAATG+AGG | - | chr8.3:13019895-13019914 | None:intergenic | 40.0% | |
| TAGGTCATATAGTAGCCAAG+AGG | - | chr8.3:13019783-13019802 | None:intergenic | 40.0% | |
| TATACTCTGGATTCATGCAG+TGG | - | chr8.3:13021466-13021485 | None:intergenic | 40.0% | |
| TGACTGCAAAAGAAAAGTCC+AGG | - | chr8.3:13019475-13019494 | None:intergenic | 40.0% | |
| TGAGAAGGTGGAATGATCAA+GGG | - | chr8.3:13019852-13019871 | None:intergenic | 40.0% | |
| TGCAATCCTATCGTTGCATT+TGG | - | chr8.3:13021510-13021529 | None:intergenic | 40.0% | |
| TGGTATGAATGAAGGCCTTA+GGG | - | chr8.3:13021179-13021198 | None:intergenic | 40.0% | |
| TTGAGAAGGTGGAATGATCA+AGG | - | chr8.3:13019853-13019872 | None:intergenic | 40.0% | |
| TTGGTATGAATGAAGGCCTT+AGG | - | chr8.3:13021180-13021199 | None:intergenic | 40.0% | |
| ! | AGCTAGGCTTCTTTGATTTC+TGG | + | chr8.3:13020554-13020573 | MS.gene036755:intron | 40.0% |
| ! | ATTTTCCAGAAACCCTAGCT+AGG | - | chr8.3:13020587-13020606 | None:intergenic | 40.0% |
| ! | CACAACATGCTTTCCTTTTC+AGG | - | chr8.3:13019351-13019370 | None:intergenic | 40.0% |
| ! | TTTTATGGCGGCTTACTTAC+AGG | - | chr8.3:13020768-13020787 | None:intergenic | 40.0% |
| !! | AGGTTGATTTGACTTGATGC+AGG | + | chr8.3:13020089-13020108 | MS.gene036755:intron | 40.0% |
| !! | AGTATCTTGGTTTGGCTTTG+GGG | + | chr8.3:13020629-13020648 | MS.gene036755:intron | 40.0% |
| !! | GAAGTATCTTGGTTTGGCTT+TGG | + | chr8.3:13020627-13020646 | MS.gene036755:intron | 40.0% |
| !! | TGAGAAGCGTTTGATGTCTA+CGG | + | chr8.3:13022318-13022337 | MS.gene036755:CDS | 40.0% |
| ACTGTCATGGCAAGATGTTC+AGG | + | chr8.3:13020209-13020228 | MS.gene036755:CDS | 45.0% | |
| AGAAAGGGAGGACAAAGTGA+AGG | + | chr8.3:13019602-13019621 | MS.gene036755:intron | 45.0% | |
| AGCTACTGCCTAACTAGCTA+GGG | - | chr8.3:13020735-13020754 | None:intergenic | 45.0% | |
| ATGTAGCAGAGTTGTTCAGC+AGG | - | chr8.3:13019065-13019084 | None:intergenic | 45.0% | |
| ATTATATACTCCCTCCGTCC+CGG | + | chr8.3:13020241-13020260 | MS.gene036755:intron | 45.0% | |
| CAACAACTGTCAATTGGGCT+AGG | + | chr8.3:13021197-13021216 | MS.gene036755:intron | 45.0% | |
| CAACCCTTTCCTCAGTAACA+TGG | - | chr8.3:13021553-13021572 | None:intergenic | 45.0% | |
| CAAGGCATATAGAGAAAGGG+AGG | + | chr8.3:13019590-13019609 | MS.gene036755:intron | 45.0% | |
| CACCCATGTTACTGAGGAAA+GGG | + | chr8.3:13021547-13021566 | MS.gene036755:CDS | 45.0% | |
| CCGGTATAAGTGACCTACTT+TGG | + | chr8.3:13020260-13020279 | MS.gene036755:intron | 45.0% | |
| CTAGCCCAATTGACAGTTGT+TGG | - | chr8.3:13021199-13021218 | None:intergenic | 45.0% | |
| GAAATAGTGACCGTTCGATG+TGG | + | chr8.3:13020138-13020157 | MS.gene036755:CDS | 45.0% | |
| GCTTCTCTGTGACTGATATC+AGG | - | chr8.3:13022020-13022039 | None:intergenic | 45.0% | |
| GGAAGAGATTCAGAGGATCA+AGG | + | chr8.3:13021986-13022005 | MS.gene036755:CDS | 45.0% | |
| GTGGTCACTGCACAAATCTA+TGG | + | chr8.3:13020157-13020176 | MS.gene036755:CDS | 45.0% | |
| TATGCAGGGAAGAGATTCAG+AGG | + | chr8.3:13021979-13021998 | MS.gene036755:intron | 45.0% | |
| TCTGGATCCTAACCTAGCTA+GGG | + | chr8.3:13020572-13020591 | MS.gene036755:intron | 45.0% | |
| TTCTCTCTTTCTGGGCTTGA+TGG | + | chr8.3:13019421-13019440 | MS.gene036755:intron | 45.0% | |
| TTCTGGATCCTAACCTAGCT+AGG | + | chr8.3:13020571-13020590 | MS.gene036755:intron | 45.0% | |
| !! | TCAGTATGGTTTGGCTTGGT+GGG | - | chr8.3:13020837-13020856 | None:intergenic | 45.0% |
| !! | TTCAGTATGGTTTGGCTTGG+TGG | - | chr8.3:13020838-13020857 | None:intergenic | 45.0% |
| !! | TTTAAATATAAAATAACTAA+TGG | + | chr8.3:13021626-13021645 | MS.gene036755:intron | 5.0% |
| !!! | ATATTTTTTATAATAAAGAT+TGG | - | chr8.3:13021041-13021060 | None:intergenic | 5.0% |
| !!! | TATTTTATATTTAAATAGAT+AGG | - | chr8.3:13021621-13021640 | None:intergenic | 5.0% |
| !!! | TTTTGTTTATTATATATTTT+TGG | + | chr8.3:13021146-13021165 | MS.gene036755:intron | 5.0% |
| AATTTCCAGCTCCCGAGAAG+AGG | + | chr8.3:13021816-13021835 | MS.gene036755:intron | 50.0% | |
| ACCAACCACCCATGTTACTG+AGG | + | chr8.3:13021541-13021560 | MS.gene036755:CDS | 50.0% | |
| AGGTACACGTTGCCTCTTCT+CGG | - | chr8.3:13021831-13021850 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr8.3:13020450-13020469 | MS.gene036755:intron | 50.0% | |
| CAGCTACTGCCTAACTAGCT+AGG | - | chr8.3:13020736-13020755 | None:intergenic | 50.0% | |
| CCACCCATGTTACTGAGGAA+AGG | + | chr8.3:13021546-13021565 | MS.gene036755:CDS | 50.0% | |
| CCACTCCCAAATGCAACGAT+AGG | + | chr8.3:13021501-13021520 | MS.gene036755:CDS | 50.0% | |
| CCAGAAACCCTAGCTAGGTT+AGG | - | chr8.3:13020582-13020601 | None:intergenic | 50.0% | |
| CCATGACAGTGACTGAAACG+CGG | - | chr8.3:13020199-13020218 | None:intergenic | 50.0% | |
| CCTAACCTAGCTAGGGTTTC+TGG | + | chr8.3:13020579-13020598 | MS.gene036755:intron | 50.0% | |
| CCTATCGTTGCATTTGGGAG+TGG | - | chr8.3:13021504-13021523 | None:intergenic | 50.0% | |
| CCTTTCCTCAGTAACATGGG+TGG | - | chr8.3:13021549-13021568 | None:intergenic | 50.0% | |
| GAGTCAAGTCTCAATCTCCC+TGG | + | chr8.3:13019454-13019473 | MS.gene036755:intron | 50.0% | |
| GTAGGTCACTTATACCGGGA+CGG | - | chr8.3:13020258-13020277 | None:intergenic | 50.0% | |
| TATGGCGGCTTACTTACAGG+TGG | - | chr8.3:13020765-13020784 | None:intergenic | 50.0% | |
| TCCTCAGTAACATGGGTGGT+TGG | - | chr8.3:13021545-13021564 | None:intergenic | 50.0% | |
| TCTGGATTCATGCAGTGGCT+AGG | - | chr8.3:13021461-13021480 | None:intergenic | 50.0% | |
| TGAGCTAGCCCTAGCTAGTT+AGG | + | chr8.3:13020724-13020743 | MS.gene036755:intron | 50.0% | |
| TGTGCAGTGACCACATCGAA+CGG | - | chr8.3:13020151-13020170 | None:intergenic | 50.0% | |
| !! | ACTACTAGCTAGGGGGTGTT+TGG | - | chr8.3:13020983-13021002 | None:intergenic | 50.0% |
| !! | ATGGTTTGGCTTGGTGGGTT+AGG | - | chr8.3:13020832-13020851 | None:intergenic | 50.0% |
| CCGCGTTTCAGTCACTGTCA+TGG | + | chr8.3:13020196-13020215 | MS.gene036755:CDS | 55.0% | |
| GGGAGGACAAAGTGAAGGTG+TGG | + | chr8.3:13019607-13019626 | MS.gene036755:intron | 55.0% | |
| GGTACACGTTGCCTCTTCTC+GGG | - | chr8.3:13021830-13021849 | None:intergenic | 55.0% | |
| GTCACTTATACCGGGACGGA+GGG | - | chr8.3:13020254-13020273 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr8.3:13020454-13020473 | MS.gene036755:intron | 55.0% | |
| TGACAGTGACTGAAACGCGG+CGG | - | chr8.3:13020196-13020215 | None:intergenic | 55.0% | |
| !! | CTAGCTAGGGCTAGCTCATC+AGG | - | chr8.3:13020722-13020741 | None:intergenic | 55.0% |
| GGTCACTTATACCGGGACGG+AGG | - | chr8.3:13020255-13020274 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr8.3:13020453-13020472 | MS.gene036755:intron | 60.0% | |
| GTGTAGTACTCCCTCCGTCC+CGG | - | chr8.3:13020467-13020486 | None:intergenic | 60.0% | |
| !! | AGGGGGTGTTTGGCTGGATG+AGG | - | chr8.3:13020973-13020992 | None:intergenic | 60.0% |
| !! | CTAGCTAGGGGGTGTTTGGC+TGG | - | chr8.3:13020979-13020998 | None:intergenic | 60.0% |
| CGTTGCCTCTTCTCGGGAGC+TGG | - | chr8.3:13021824-13021843 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 13019035 | 13022360 | 13019035 | ID=MS.gene036755 |
| chr8.3 | mRNA | 13019035 | 13022360 | 13019035 | ID=MS.gene036755.t1;Parent=MS.gene036755 |
| chr8.3 | exon | 13019035 | 13019115 | 13019035 | ID=MS.gene036755.t1.exon1;Parent=MS.gene036755.t1 |
| chr8.3 | CDS | 13019035 | 13019115 | 13019035 | ID=cds.MS.gene036755.t1;Parent=MS.gene036755.t1 |
| chr8.3 | exon | 13020111 | 13020230 | 13020111 | ID=MS.gene036755.t1.exon2;Parent=MS.gene036755.t1 |
| chr8.3 | CDS | 13020111 | 13020230 | 13020111 | ID=cds.MS.gene036755.t1;Parent=MS.gene036755.t1 |
| chr8.3 | exon | 13021455 | 13021581 | 13021455 | ID=MS.gene036755.t1.exon3;Parent=MS.gene036755.t1 |
| chr8.3 | CDS | 13021455 | 13021581 | 13021455 | ID=cds.MS.gene036755.t1;Parent=MS.gene036755.t1 |
| chr8.3 | exon | 13021825 | 13021873 | 13021825 | ID=MS.gene036755.t1.exon4;Parent=MS.gene036755.t1 |
| chr8.3 | CDS | 13021825 | 13021873 | 13021825 | ID=cds.MS.gene036755.t1;Parent=MS.gene036755.t1 |
| chr8.3 | exon | 13021986 | 13022061 | 13021986 | ID=MS.gene036755.t1.exon5;Parent=MS.gene036755.t1 |
| chr8.3 | CDS | 13021986 | 13022061 | 13021986 | ID=cds.MS.gene036755.t1;Parent=MS.gene036755.t1 |
| chr8.3 | exon | 13022146 | 13022214 | 13022146 | ID=MS.gene036755.t1.exon6;Parent=MS.gene036755.t1 |
| chr8.3 | CDS | 13022146 | 13022214 | 13022146 | ID=cds.MS.gene036755.t1;Parent=MS.gene036755.t1 |
| chr8.3 | exon | 13022313 | 13022360 | 13022313 | ID=MS.gene036755.t1.exon7;Parent=MS.gene036755.t1 |
| chr8.3 | CDS | 13022313 | 13022360 | 13022313 | ID=cds.MS.gene036755.t1;Parent=MS.gene036755.t1 |
| Gene Sequence |
| Protein sequence |
