Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036814.t1 | XP_003609280.3 | 89.6 | 327 | 33 | 1 | 1 | 326 | 1 | 327 | 1.70E-170 | 608.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036814.t1 | Q9LT81 | 40.5 | 351 | 144 | 11 | 32 | 326 | 32 | 373 | 2.0e-58 | 227.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036814.t1 | A0A396IEH0 | 90.3 | 248 | 23 | 1 | 1 | 247 | 1 | 248 | 6.5e-132 | 479.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene036814.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036814.t1 | MTR_4g113970 | 94.332 | 247 | 13 | 1 | 1 | 246 | 1 | 247 | 1.83e-176 | 489 |
| MS.gene036814.t1 | MTR_4g113860 | 61.493 | 335 | 92 | 8 | 1 | 326 | 1 | 307 | 2.79e-139 | 397 |
| MS.gene036814.t1 | MTR_4g113940 | 55.793 | 328 | 85 | 10 | 1 | 326 | 1 | 270 | 3.06e-111 | 324 |
| MS.gene036814.t1 | MTR_3g050390 | 51.590 | 283 | 76 | 7 | 44 | 326 | 7 | 228 | 1.57e-87 | 263 |
| MS.gene036814.t1 | MTR_4g113890 | 47.130 | 331 | 68 | 9 | 1 | 325 | 1 | 230 | 7.12e-75 | 230 |
| MS.gene036814.t1 | MTR_8g066730 | 34.106 | 302 | 140 | 10 | 71 | 326 | 86 | 374 | 6.38e-41 | 147 |
| MS.gene036814.t1 | MTR_4g113980 | 89.024 | 82 | 9 | 0 | 245 | 326 | 9 | 90 | 2.55e-33 | 118 |
| MS.gene036814.t1 | MTR_8g066730 | 35.922 | 206 | 91 | 6 | 71 | 244 | 86 | 282 | 1.86e-30 | 117 |
| MS.gene036814.t1 | MTR_3g466460 | 53.763 | 93 | 36 | 2 | 240 | 326 | 3 | 94 | 4.42e-20 | 85.1 |
| MS.gene036814.t1 | MTR_3g028610 | 42.857 | 91 | 47 | 1 | 154 | 244 | 96 | 181 | 6.94e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036814.t1 | AT3G19360 | 44.753 | 324 | 131 | 10 | 42 | 326 | 59 | 373 | 1.37e-76 | 240 |
| MS.gene036814.t1 | AT3G19360 | 44.753 | 324 | 131 | 10 | 42 | 326 | 59 | 373 | 1.37e-76 | 240 |
| MS.gene036814.t1 | AT1G32360 | 32.550 | 298 | 159 | 8 | 71 | 326 | 85 | 382 | 1.88e-36 | 135 |
| MS.gene036814.t1 | AT2G35430 | 30.392 | 204 | 108 | 8 | 138 | 326 | 66 | 250 | 2.47e-16 | 77.8 |
| MS.gene036814.t1 | AT2G35430 | 35.849 | 106 | 46 | 4 | 77 | 168 | 71 | 168 | 2.48e-11 | 63.5 |
Find 101 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGTTCTCCAAAGTCTTT+TGG | 0.221074 | 8.1:-12634509 | MS.gene036814:CDS |
| GCAATAAGCATTGGAAATAT+TGG | 0.228785 | 8.1:-12634527 | MS.gene036814:CDS |
| ATGAGGATCCTGCTAGGTTT+AGG | 0.244285 | 8.1:-12634580 | MS.gene036814:CDS |
| TGGGGATGGTTCTAACAATT+TGG | 0.253072 | 8.1:-12634489 | MS.gene036814:CDS |
| CTAACAATTTGGAAGGCATT+AGG | 0.254194 | 8.1:-12634478 | MS.gene036814:CDS |
| AAGAAGATCAATGGTATTTA+TGG | 0.269407 | 8.1:-12632270 | MS.gene036814:CDS |
| CACTTACTTAGGTTGAAATT+AGG | 0.275359 | 8.1:-12632294 | MS.gene036814:CDS |
| CAAGGCAGCCACCACCAAAT+TGG | 0.283685 | 8.1:-12634697 | MS.gene036814:CDS |
| TGAGGATCCTGCTAGGTTTA+GGG | 0.310738 | 8.1:-12634579 | MS.gene036814:CDS |
| CTAGGTTTAGGGATGATTCT+TGG | 0.317545 | 8.1:-12634568 | MS.gene036814:CDS |
| GCAACACCTGTTGAGGCTTT+TGG | 0.324209 | 8.1:+12632387 | None:intergenic |
| TTCCAATAAGCGCTCCTTGC+TGG | 0.328577 | 8.1:+12634443 | None:intergenic |
| AGCCAGCAAGGAGCGCTTAT+TGG | 0.331978 | 8.1:-12634445 | MS.gene036814:CDS |
| TCAATGGTATTTATGGTGAT+TGG | 0.333200 | 8.1:-12632263 | MS.gene036814:CDS |
| CACTTCAATGATATCGTTGT+TGG | 0.339985 | 8.1:+12635024 | None:intergenic |
| ATACAGGGAGCTGTCCCTTT+GGG | 0.341839 | 8.1:-12634397 | MS.gene036814:CDS |
| ACCTGAACTTAGTGCAGATT+CGG | 0.365276 | 8.1:+12634843 | None:intergenic |
| TAACAATTTGGAAGGCATTA+GGG | 0.381170 | 8.1:-12634477 | MS.gene036814:CDS |
| TAAGGCAGCCACCGCGGAAT+TGG | 0.383871 | 8.1:-12634766 | MS.gene036814:CDS |
| ATGCTGCTTGTTCCTCGGTT+TGG | 0.390724 | 8.1:+12634878 | None:intergenic |
| TCAGAGTGATCGTTATTGAT+TGG | 0.398911 | 8.1:+12634989 | None:intergenic |
| CAGAGTGATCGTTATTGATT+GGG | 0.400279 | 8.1:+12634990 | None:intergenic |
| AACGGTGAGGAATGTCCTTA+TGG | 0.402090 | 8.1:-12634623 | MS.gene036814:CDS |
| AGGTTTGGTACTTGTAGAAA+TGG | 0.405516 | 8.1:-12634824 | MS.gene036814:CDS |
| CCCGAATCTGCACTAAGTTC+AGG | 0.412306 | 8.1:-12634844 | MS.gene036814:CDS |
| ATCTGCACTAAGTTCAGGTT+TGG | 0.426557 | 8.1:-12634839 | MS.gene036814:CDS |
| CCTGAACTTAGTGCAGATTC+GGG | 0.429469 | 8.1:+12634844 | None:intergenic |
| CATACAGGGAGCTGTCCCTT+TGG | 0.435906 | 8.1:-12634398 | MS.gene036814:CDS |
| GATTGATATGCCCTCCTTCA+AGG | 0.436742 | 8.1:-12634916 | MS.gene036814:CDS |
| CTGCTTGTTCCTCGGTTTGG+TGG | 0.444819 | 8.1:+12634881 | None:intergenic |
| GCAGCCACCGCGGAATTGGC+AGG | 0.444919 | 8.1:-12634762 | MS.gene036814:CDS |
| AAGGCAGCCACCACCAAATT+GGG | 0.448398 | 8.1:-12634696 | MS.gene036814:CDS |
| CTGTGTCAATGGCAGCATAC+AGG | 0.450029 | 8.1:-12634413 | MS.gene036814:CDS |
| GAACCATCCCCAAAAGACTT+TGG | 0.450065 | 8.1:+12634500 | None:intergenic |
| CTTGTTCCTCGGTTTGGTGG+AGG | 0.456539 | 8.1:+12634884 | None:intergenic |
| CACTTTGCTCATGGAGAAGC+AGG | 0.457533 | 8.1:-12634365 | MS.gene036814:intron |
| ATAAGAAGAAGCACTTACTT+AGG | 0.466516 | 8.1:-12632305 | MS.gene036814:CDS |
| AGCAATTCTCGCCCTCTTGA+AGG | 0.471550 | 8.1:+12634958 | None:intergenic |
| AATATCGTCTGGAAAATTCA+TGG | 0.472650 | 8.1:+12635084 | None:intergenic |
| CTACAGGTTGGAATATCGTC+TGG | 0.476700 | 8.1:+12635073 | None:intergenic |
| AAAATTGCAATTACGCTCAC+GGG | 0.487194 | 8.1:-12634799 | MS.gene036814:CDS |
| ACTTCACCAAAAGCCTCAAC+AGG | 0.492958 | 8.1:-12632393 | MS.gene036814:CDS |
| TCGTTATTGATTGGGATTTG+AGG | 0.495130 | 8.1:+12634998 | None:intergenic |
| GGAGGCTGAATCATCCTTGA+AGG | 0.501461 | 8.1:+12634902 | None:intergenic |
| GAGACCTGTCACTTTGCTCA+TGG | 0.502581 | 8.1:-12634374 | MS.gene036814:CDS |
| CTCACGGGGCTGATGAGATA+AGG | 0.504892 | 8.1:-12634784 | MS.gene036814:CDS |
| TTGATCCTCGCAACGACGAA+CGG | 0.512205 | 8.1:-12634733 | MS.gene036814:CDS |
| CATGACAAAGGAAGAGGAGC+AGG | 0.513127 | 8.1:-12632328 | MS.gene036814:CDS |
| TGATCTTCATCCCAATTTGG+TGG | 0.514081 | 8.1:+12634686 | None:intergenic |
| GAGTTACAAGCTCCTGGTGG+AGG | 0.514447 | 8.1:-12632471 | MS.gene036814:CDS |
| AAGCTACACTTATCACCATA+AGG | 0.515098 | 8.1:+12634608 | None:intergenic |
| GAAGGTAGGAGTAGAATCAT+TGG | 0.517961 | 8.1:+12632365 | None:intergenic |
| CTTTGTCATGAGTAGACTTG+TGG | 0.519083 | 8.1:+12632341 | None:intergenic |
| TTCTCCATGAGCAAAGTGAC+AGG | 0.523166 | 8.1:+12634370 | None:intergenic |
| TTCTTCATGAGGATCCTGCT+AGG | 0.523992 | 8.1:-12634586 | MS.gene036814:CDS |
| GGAAGACAAAGCTGTGTCAA+TGG | 0.532349 | 8.1:-12634424 | MS.gene036814:CDS |
| ATCATTGGCAACACCTGTTG+AGG | 0.534873 | 8.1:+12632380 | None:intergenic |
| GAATCATCCCTAAACCTAGC+AGG | 0.537317 | 8.1:+12634572 | None:intergenic |
| TCTTCATCCCAATTTGGTGG+TGG | 0.537541 | 8.1:+12634689 | None:intergenic |
| GATGGTTCTAACAATTTGGA+AGG | 0.539743 | 8.1:-12634485 | MS.gene036814:CDS |
| GAGTGTTCTGCAATAAGCAT+TGG | 0.542316 | 8.1:-12634536 | MS.gene036814:CDS |
| AAGTGACAGGTCTCCCCAAA+GGG | 0.549845 | 8.1:+12634383 | None:intergenic |
| TGTGTCAATGGCAGCATACA+GGG | 0.552109 | 8.1:-12634412 | MS.gene036814:CDS |
| CTGCGGTGGTGACATCCTAC+AGG | 0.555913 | 8.1:+12635057 | None:intergenic |
| GAAAATTGCAATTACGCTCA+CGG | 0.559384 | 8.1:-12634800 | MS.gene036814:CDS |
| AAATCAGAGTTACAAGCTCC+TGG | 0.561857 | 8.1:-12632477 | MS.gene036814:intron |
| AAATTAGGCAAGAAGATCAA+TGG | 0.564267 | 8.1:-12632279 | MS.gene036814:CDS |
| AGTAGACTTGTGGTGAAGGT+AGG | 0.573300 | 8.1:+12632351 | None:intergenic |
| CAACGACGAACGGCTTCAGA+TGG | 0.574258 | 8.1:-12634723 | MS.gene036814:CDS |
| TCAGCTTCAATGCCTCCACC+AGG | 0.581762 | 8.1:+12632459 | None:intergenic |
| GGCTGAATCATCCTTGAAGG+AGG | 0.587591 | 8.1:+12634905 | None:intergenic |
| TCTACTCATGACAAAGGAAG+AGG | 0.589668 | 8.1:-12632334 | MS.gene036814:CDS |
| CTCGCCCTCTTGAAGGAATG+TGG | 0.590307 | 8.1:+12634965 | None:intergenic |
| TACAGGGAGCTGTCCCTTTG+GGG | 0.596640 | 8.1:-12634396 | MS.gene036814:CDS |
| CATGAGTAGACTTGTGGTGA+AGG | 0.601665 | 8.1:+12632347 | None:intergenic |
| GGAGGGCATATCAATCCACT+AGG | 0.602999 | 8.1:+12634923 | None:intergenic |
| CTGAGCCACATTCCTTCAAG+AGG | 0.603957 | 8.1:-12634970 | MS.gene036814:CDS |
| GGGCTGTGAACAAGCCAGCA+AGG | 0.614710 | 8.1:-12634457 | MS.gene036814:CDS |
| TAAGTGTAGCTTTCTTCATG+AGG | 0.621800 | 8.1:-12634597 | MS.gene036814:CDS |
| TGAAGCCGTTCGTCGTTGCG+AGG | 0.623112 | 8.1:+12634728 | None:intergenic |
| AAAGTGACAGGTCTCCCCAA+AGG | 0.626382 | 8.1:+12634382 | None:intergenic |
| CAGACGATATTCCAACCTGT+AGG | 0.630277 | 8.1:-12635072 | MS.gene036814:CDS |
| AGCTCCTGCCAATTCCGCGG+TGG | 0.631980 | 8.1:+12634758 | None:intergenic |
| CACAAGTCTACTCATGACAA+AGG | 0.632619 | 8.1:-12632340 | MS.gene036814:CDS |
| GAGGGCATATCAATCCACTA+GGG | 0.647490 | 8.1:+12634924 | None:intergenic |
| AACGGCTTCAGATGGAGACA+AGG | 0.650858 | 8.1:-12634715 | MS.gene036814:CDS |
| GCTGAATCATCCTTGAAGGA+GGG | 0.652254 | 8.1:+12634906 | None:intergenic |
| TGAGCCACATTCCTTCAAGA+GGG | 0.655888 | 8.1:-12634969 | MS.gene036814:CDS |
| ACTAGCTCCTGCCAATTCCG+CGG | 0.663260 | 8.1:+12634755 | None:intergenic |
| GGTGGTGACATCCTACAGGT+TGG | 0.681473 | 8.1:+12635061 | None:intergenic |
| ATGAGATAAGGCAGCCACCG+CGG | 0.683865 | 8.1:-12634772 | MS.gene036814:CDS |
| TCAGAGTTACAAGCTCCTGG+TGG | 0.696701 | 8.1:-12632474 | MS.gene036814:intron |
| GGGCATATCAATCCACTAGG+GGG | 0.701239 | 8.1:+12634926 | None:intergenic |
| ACAACGATATCATTGAAGTG+AGG | 0.706867 | 8.1:-12635021 | MS.gene036814:CDS |
| ATTCAGCCTCCACCAAACCG+AGG | 0.710090 | 8.1:-12634890 | MS.gene036814:CDS |
| CAAGAAGTATTACAACGGTG+AGG | 0.717786 | 8.1:-12634636 | MS.gene036814:CDS |
| AAATTGCAATTACGCTCACG+GGG | 0.722741 | 8.1:-12634798 | MS.gene036814:CDS |
| AGGGCATATCAATCCACTAG+GGG | 0.727577 | 8.1:+12634925 | None:intergenic |
| CTGTGCAAGAAGTATTACAA+CGG | 0.729247 | 8.1:-12634641 | MS.gene036814:CDS |
| TTGGATGAAGCAAACTGCGG+TGG | 0.740311 | 8.1:+12635043 | None:intergenic |
| TTGTTGGATGAAGCAAACTG+CGG | 0.811729 | 8.1:+12635040 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTTTTTTGCATATT+TGG | - | chr8.1:12634735-12634754 | MS.gene036814:CDS | 10.0% |
| !! | GTGATTGAATATTTAAATTT+AGG | + | chr8.1:12633781-12633800 | None:intergenic | 15.0% |
| !!! | TTCTAATTCAAAAGTAATTT+TGG | + | chr8.1:12634009-12634028 | None:intergenic | 15.0% |
| !! | AAATAAAAATTCCTGACAAT+GGG | + | chr8.1:12633738-12633757 | None:intergenic | 20.0% |
| !! | AATCATCCATTATAATATGA+AGG | + | chr8.1:12633803-12633822 | None:intergenic | 20.0% |
| !! | ACAATTACAATAGATAAGAA+AGG | - | chr8.1:12634762-12634781 | MS.gene036814:CDS | 20.0% |
| !! | CAAAACCATTAATCAAAATA+GGG | + | chr8.1:12633029-12633048 | None:intergenic | 20.0% |
| !! | TCAAAACCATTAATCAAAAT+AGG | + | chr8.1:12633030-12633049 | None:intergenic | 20.0% |
| !!! | TTATATGTCATGCTTATTTT+TGG | - | chr8.1:12634208-12634227 | MS.gene036814:intron | 20.0% |
| ! | AAAAATCTGGTATAGAAACA+TGG | + | chr8.1:12633440-12633459 | None:intergenic | 25.0% |
| ! | AAGAAGATCAATGGTATTTA+TGG | - | chr8.1:12635063-12635082 | MS.gene036814:CDS | 25.0% |
| ! | AATAAAAATTCCTGACAATG+GGG | + | chr8.1:12633737-12633756 | None:intergenic | 25.0% |
| ! | AATGTTTGACCGTAAAATTA+AGG | + | chr8.1:12634597-12634616 | None:intergenic | 25.0% |
| ! | ATTAATCAAAATAGGGAGAA+TGG | + | chr8.1:12633022-12633041 | None:intergenic | 25.0% |
| ! | CAAATAAAAATTCCTGACAA+TGG | + | chr8.1:12633739-12633758 | None:intergenic | 25.0% |
| ! | CAATCACCTTCATATTATAA+TGG | - | chr8.1:12633794-12633813 | MS.gene036814:intron | 25.0% |
| ! | TTATAACAATTGAAGCTGTT+TGG | - | chr8.1:12634788-12634807 | MS.gene036814:CDS | 25.0% |
| !!! | AAGTAATTTTGGTACATACT+TGG | + | chr8.1:12633998-12634017 | None:intergenic | 25.0% |
| !!! | ATGTTTCTATACCAGATTTT+TGG | - | chr8.1:12633439-12633458 | MS.gene036814:intron | 25.0% |
| !!! | ATTCTCCCTATTTTGATTAA+TGG | - | chr8.1:12633021-12633040 | MS.gene036814:intron | 25.0% |
| !!! | TTCTTTCAGTTTTGAAGTAA+TGG | - | chr8.1:12633287-12633306 | MS.gene036814:intron | 25.0% |
| AAAGATAAAAGCAGTCACTT+CGG | + | chr8.1:12634369-12634388 | None:intergenic | 30.0% | |
| AAATTAGGCAAGAAGATCAA+TGG | - | chr8.1:12635054-12635073 | MS.gene036814:CDS | 30.0% | |
| AATATAAAACCTCGCAAATG+AGG | + | chr8.1:12634558-12634577 | None:intergenic | 30.0% | |
| AATCAACAAATGTAAAGCTG+TGG | + | chr8.1:12633860-12633879 | None:intergenic | 30.0% | |
| ATATCATACACAACAACGAT+AGG | + | chr8.1:12633268-12633287 | None:intergenic | 30.0% | |
| ATGATACCAAGTACGAATAT+CGG | + | chr8.1:12634305-12634324 | None:intergenic | 30.0% | |
| TCAATGGTATTTATGGTGAT+TGG | - | chr8.1:12635070-12635089 | MS.gene036814:CDS | 30.0% | |
| TCTTAGTGTTGTCAAATTCA+TGG | - | chr8.1:12633342-12633361 | MS.gene036814:intron | 30.0% | |
| TGTCCGACTCATAAAAAAAT+TGG | - | chr8.1:12634523-12634542 | MS.gene036814:CDS | 30.0% | |
| TGTTGTGTATGATATTTCCA+TGG | - | chr8.1:12633175-12633194 | MS.gene036814:intron | 30.0% | |
| TTCTATGATGATTGTGTAGA+AGG | - | chr8.1:12633094-12633113 | MS.gene036814:intron | 30.0% | |
| TTGTTAAATAGCGACTATAG+CGG | + | chr8.1:12633671-12633690 | None:intergenic | 30.0% | |
| ! | AATGGATGATTGCTATTGTA+TGG | - | chr8.1:12633812-12633831 | MS.gene036814:intron | 30.0% |
| ! | CTTTACATTTGTTGATTGAC+TGG | - | chr8.1:12633863-12633882 | MS.gene036814:intron | 30.0% |
| ! | TATCCTAAAAAGCATATCAC+TGG | - | chr8.1:12633607-12633626 | MS.gene036814:intron | 30.0% |
| ! | TCAAACATTTTTAATGCAGC+TGG | - | chr8.1:12634608-12634627 | MS.gene036814:CDS | 30.0% |
| ! | TGTCGCAATCCTTAATTTTA+CGG | - | chr8.1:12634585-12634604 | MS.gene036814:CDS | 30.0% |
| ! | TTTTGATCTTCATCCCAATT+TGG | + | chr8.1:12632653-12632672 | None:intergenic | 30.0% |
| !! | ATAAGAAGAAGCACTTACTT+AGG | - | chr8.1:12635028-12635047 | MS.gene036814:CDS | 30.0% |
| !! | CACTTACTTAGGTTGAAATT+AGG | - | chr8.1:12635039-12635058 | MS.gene036814:CDS | 30.0% |
| !! | GATACACTAGGATAGTTTTA+CGG | - | chr8.1:12634048-12634067 | MS.gene036814:intron | 30.0% |
| !! | GCAATAAGCATTGGAAATAT+TGG | - | chr8.1:12632806-12632825 | MS.gene036814:intron | 30.0% |
| !! | TAACAATTTGGAAGGCATTA+GGG | - | chr8.1:12632856-12632875 | MS.gene036814:intron | 30.0% |
| !!! | CCTCCAATTTTTTTATGAGT+CGG | + | chr8.1:12634529-12634548 | None:intergenic | 30.0% |
| AAAATTGCAATTACGCTCAC+GGG | - | chr8.1:12632534-12632553 | MS.gene036814:intron | 35.0% | |
| AAGCTACACTTATCACCATA+AGG | + | chr8.1:12632728-12632747 | None:intergenic | 35.0% | |
| ACAACGATATCATTGAAGTG+AGG | - | chr8.1:12632312-12632331 | MS.gene036814:CDS | 35.0% | |
| AGCTATTACACTGTTGCATA+GGG | + | chr8.1:12633570-12633589 | None:intergenic | 35.0% | |
| AGTTTATGTCAAACCAACCA+TGG | + | chr8.1:12633195-12633214 | None:intergenic | 35.0% | |
| ATACACAGTGTTGTCAATTG+TGG | - | chr8.1:12633514-12633533 | MS.gene036814:intron | 35.0% | |
| ATCAGCCAGAACAAAATACA+TGG | + | chr8.1:12634817-12634836 | None:intergenic | 35.0% | |
| ATCATACACAACAACGAAAG+TGG | + | chr8.1:12633168-12633187 | None:intergenic | 35.0% | |
| CACTTCAATGATATCGTTGT+TGG | + | chr8.1:12632312-12632331 | None:intergenic | 35.0% | |
| CCGACTCATAAAAAAATTGG+AGG | - | chr8.1:12634526-12634545 | MS.gene036814:CDS | 35.0% | |
| GAAAATTGCAATTACGCTCA+CGG | - | chr8.1:12632533-12632552 | MS.gene036814:intron | 35.0% | |
| GAGTCGGACATTAAATTTAC+AGG | + | chr8.1:12634513-12634532 | None:intergenic | 35.0% | |
| GTGTATGATATTTCCATGGT+TGG | - | chr8.1:12633179-12633198 | MS.gene036814:intron | 35.0% | |
| TAACCTTATCCATGCAACAT+AGG | - | chr8.1:12634326-12634345 | MS.gene036814:intron | 35.0% | |
| TAAGTGTAGCTTTCTTCATG+AGG | - | chr8.1:12632736-12632755 | MS.gene036814:intron | 35.0% | |
| TATGGTAGCTGGAACATAAT+CGG | + | chr8.1:12633368-12633387 | None:intergenic | 35.0% | |
| TCAGAGTGATCGTTATTGAT+TGG | + | chr8.1:12632347-12632366 | None:intergenic | 35.0% | |
| TGTCAAAAACCTTAACGTCT+TGG | - | chr8.1:12634655-12634674 | MS.gene036814:CDS | 35.0% | |
| TGTTAAATAGCGACTATAGC+GGG | + | chr8.1:12633670-12633689 | None:intergenic | 35.0% | |
| TTGTATCCGATATTCGTACT+TGG | - | chr8.1:12634296-12634315 | MS.gene036814:intron | 35.0% | |
| ! | AAAAAATGCTGCTTGTTCCT+CGG | + | chr8.1:12632463-12632482 | None:intergenic | 35.0% |
| ! | AGCTTTTGTTGAGCTTACTA+TGG | + | chr8.1:12634911-12634930 | None:intergenic | 35.0% |
| ! | AGGTTTGGTACTTGTAGAAA+TGG | - | chr8.1:12632509-12632528 | MS.gene036814:intron | 35.0% |
| ! | CAGAGTGATCGTTATTGATT+GGG | + | chr8.1:12632346-12632365 | None:intergenic | 35.0% |
| ! | GACTGGAACTTTTAGATGTT+TGG | - | chr8.1:12633880-12633899 | MS.gene036814:intron | 35.0% |
| ! | GGAAAACTTGTTTGTACGAT+CGG | - | chr8.1:12633308-12633327 | MS.gene036814:intron | 35.0% |
| ! | GGTTTCCATGTATTTTGTTC+TGG | - | chr8.1:12634809-12634828 | MS.gene036814:CDS | 35.0% |
| ! | TCGTTATTGATTGGGATTTG+AGG | + | chr8.1:12632338-12632357 | None:intergenic | 35.0% |
| ! | TTATGATAATGCTGCCCTAT+TGG | - | chr8.1:12633487-12633506 | MS.gene036814:intron | 35.0% |
| !! | ATTGGTTCTCCAAAGTCTTT+TGG | - | chr8.1:12632824-12632843 | MS.gene036814:intron | 35.0% |
| !! | CTAACAATTTGGAAGGCATT+AGG | - | chr8.1:12632855-12632874 | MS.gene036814:intron | 35.0% |
| !! | CTGTGCAAGAAGTATTACAA+CGG | - | chr8.1:12632692-12632711 | MS.gene036814:intron | 35.0% |
| !! | GATGGTTCTAACAATTTGGA+AGG | - | chr8.1:12632848-12632867 | MS.gene036814:intron | 35.0% |
| !! | TGTCCAGTGATATGCTTTTT+AGG | + | chr8.1:12633613-12633632 | None:intergenic | 35.0% |
| !! | TTGGTTCTCCAAAGTCTTTT+GGG | - | chr8.1:12632825-12632844 | MS.gene036814:intron | 35.0% |
| AAATCAGAGTTACAAGCTCC+TGG | - | chr8.1:12634856-12634875 | MS.gene036814:CDS | 40.0% | |
| AAATTGCAATTACGCTCACG+GGG | - | chr8.1:12632535-12632554 | MS.gene036814:intron | 40.0% | |
| AAGGTATGCGACAAAAACTG+TGG | + | chr8.1:12634681-12634700 | None:intergenic | 40.0% | |
| ACACCTATGTTGCATGGATA+AGG | + | chr8.1:12634332-12634351 | None:intergenic | 40.0% | |
| ACACTGTGTATACCTCCAAT+AGG | + | chr8.1:12633505-12633524 | None:intergenic | 40.0% | |
| ACCAAAAGACGAAACAGGAT+TGG | + | chr8.1:12634475-12634494 | None:intergenic | 40.0% | |
| ACCTGAACTTAGTGCAGATT+CGG | + | chr8.1:12632493-12632512 | None:intergenic | 40.0% | |
| ACTATCCTAGTGTATCCAAG+TGG | + | chr8.1:12634044-12634063 | None:intergenic | 40.0% | |
| ATAATAGCCATTGCAGCCTA+TGG | + | chr8.1:12633386-12633405 | None:intergenic | 40.0% | |
| ATACTCCACTTGGATACACT+AGG | - | chr8.1:12634036-12634055 | MS.gene036814:intron | 40.0% | |
| CACAAGTCTACTCATGACAA+AGG | - | chr8.1:12634993-12635012 | MS.gene036814:CDS | 40.0% | |
| CACTGTGTATACCTCCAATA+GGG | + | chr8.1:12633504-12633523 | None:intergenic | 40.0% | |
| CAGAAACCAAAAGACGAAAC+AGG | + | chr8.1:12634480-12634499 | None:intergenic | 40.0% | |
| CAGCTATTACACTGTTGCAT+AGG | + | chr8.1:12633571-12633590 | None:intergenic | 40.0% | |
| CATACACAACAACGATAGGA+AGG | + | chr8.1:12633264-12633283 | None:intergenic | 40.0% | |
| CTAGGTTTAGGGATGATTCT+TGG | - | chr8.1:12632765-12632784 | MS.gene036814:intron | 40.0% | |
| CTGCATAGTCGATCAAAAGA+AGG | + | chr8.1:12633925-12633944 | None:intergenic | 40.0% | |
| CTTTGTCATGAGTAGACTTG+TGG | + | chr8.1:12634995-12635014 | None:intergenic | 40.0% | |
| GAAGGTAGGAGTAGAATCAT+TGG | + | chr8.1:12634971-12634990 | None:intergenic | 40.0% | |
| GAGTGTTCTGCAATAAGCAT+TGG | - | chr8.1:12632797-12632816 | MS.gene036814:intron | 40.0% | |
| GATTATGTTCCAGCTACCAT+AGG | - | chr8.1:12633367-12633386 | MS.gene036814:intron | 40.0% | |
| GCAGCATTATCATAAGTGGA+AGG | + | chr8.1:12633482-12633501 | None:intergenic | 40.0% | |
| GCATTATCATAAGTGGAAGG+TGG | + | chr8.1:12633479-12633498 | None:intergenic | 40.0% | |
| GCTGCAATGGCTATTATATC+TGG | - | chr8.1:12633389-12633408 | MS.gene036814:intron | 40.0% | |
| GTTAAATAGCGACTATAGCG+GGG | + | chr8.1:12633669-12633688 | None:intergenic | 40.0% | |
| TAGGGCAGCATTATCATAAG+TGG | + | chr8.1:12633486-12633505 | None:intergenic | 40.0% | |
| TATCCATGCAACATAGGTGT+CGG | - | chr8.1:12634332-12634351 | MS.gene036814:intron | 40.0% | |
| TCACACTCTTACTGTACTTG+TGG | - | chr8.1:12633965-12633984 | MS.gene036814:intron | 40.0% | |
| TCTACTCATGACAAAGGAAG+AGG | - | chr8.1:12634999-12635018 | MS.gene036814:CDS | 40.0% | |
| TGATCTTCATCCCAATTTGG+TGG | + | chr8.1:12632650-12632669 | None:intergenic | 40.0% | |
| TTGTTGGATGAAGCAAACTG+CGG | + | chr8.1:12632296-12632315 | None:intergenic | 40.0% | |
| ! | ATCTGCACTAAGTTCAGGTT+TGG | - | chr8.1:12632494-12632513 | MS.gene036814:intron | 40.0% |
| ! | TCCAATCCTGTTTCGTCTTT+TGG | - | chr8.1:12634471-12634490 | MS.gene036814:CDS | 40.0% |
| ! | TGGTTCTCCAAAGTCTTTTG+GGG | - | chr8.1:12632826-12632845 | MS.gene036814:intron | 40.0% |
| ! | TGTTCTGGCTGATGAAGTAT+TGG | - | chr8.1:12634824-12634843 | MS.gene036814:CDS | 40.0% |
| ! | TTTTGATCGACTATGCAGCA+TGG | - | chr8.1:12633927-12633946 | MS.gene036814:intron | 40.0% |
| !! | CAAGAAGTATTACAACGGTG+AGG | - | chr8.1:12632697-12632716 | MS.gene036814:intron | 40.0% |
| !! | TGGGGATGGTTCTAACAATT+TGG | - | chr8.1:12632844-12632863 | MS.gene036814:intron | 40.0% |
| !!! | CGTCTTTTGGTTTCTGCTAA+TGG | - | chr8.1:12634484-12634503 | MS.gene036814:CDS | 40.0% |
| AAACATGGCATTGCAGCCTA+TGG | + | chr8.1:12633425-12633444 | None:intergenic | 45.0% | |
| AAACTGTGGCCAAGACGTTA+AGG | + | chr8.1:12634667-12634686 | None:intergenic | 45.0% | |
| AACGGTGAGGAATGTCCTTA+TGG | - | chr8.1:12632710-12632729 | MS.gene036814:intron | 45.0% | |
| ACAGCAGCTAGCCAAAAATC+TGG | + | chr8.1:12633453-12633472 | None:intergenic | 45.0% | |
| ACTTCACCAAAAGCCTCAAC+AGG | - | chr8.1:12634940-12634959 | MS.gene036814:CDS | 45.0% | |
| AGGGCATATCAATCCACTAG+GGG | + | chr8.1:12632411-12632430 | None:intergenic | 45.0% | |
| AGGTACATTCCTCATTTGCG+AGG | - | chr8.1:12634546-12634565 | MS.gene036814:CDS | 45.0% | |
| AGTAGACTTGTGGTGAAGGT+AGG | + | chr8.1:12634985-12635004 | None:intergenic | 45.0% | |
| ATCATTGGCAACACCTGTTG+AGG | + | chr8.1:12634956-12634975 | None:intergenic | 45.0% | |
| ATGAGGATCCTGCTAGGTTT+AGG | - | chr8.1:12632753-12632772 | MS.gene036814:intron | 45.0% | |
| ATTCCTGACAATGGGGTTGA+TGG | + | chr8.1:12633730-12633749 | None:intergenic | 45.0% | |
| CAGACGATATTCCAACCTGT+AGG | - | chr8.1:12632261-12632280 | MS.gene036814:CDS | 45.0% | |
| CATGAGTAGACTTGTGGTGA+AGG | + | chr8.1:12634989-12635008 | None:intergenic | 45.0% | |
| CCTGAACTTAGTGCAGATTC+GGG | + | chr8.1:12632492-12632511 | None:intergenic | 45.0% | |
| GAAACGCTAGATACTCCACT+TGG | - | chr8.1:12634026-12634045 | MS.gene036814:intron | 45.0% | |
| GAACCATCCCCAAAAGACTT+TGG | + | chr8.1:12632836-12632855 | None:intergenic | 45.0% | |
| GAATCATCCCTAAACCTAGC+AGG | + | chr8.1:12632764-12632783 | None:intergenic | 45.0% | |
| GATTGATATGCCCTCCTTCA+AGG | - | chr8.1:12632417-12632436 | MS.gene036814:CDS | 45.0% | |
| GCTGAATCATCCTTGAAGGA+GGG | + | chr8.1:12632430-12632449 | None:intergenic | 45.0% | |
| GGAAGACAAAGCTGTGTCAA+TGG | - | chr8.1:12632909-12632928 | MS.gene036814:intron | 45.0% | |
| TAAAAGCAGTCACTTCGGTG+TGG | + | chr8.1:12634364-12634383 | None:intergenic | 45.0% | |
| TGAGCCACATTCCTTCAAGA+GGG | - | chr8.1:12632364-12632383 | MS.gene036814:CDS | 45.0% | |
| TGAGGATCCTGCTAGGTTTA+GGG | - | chr8.1:12632754-12632773 | MS.gene036814:intron | 45.0% | |
| TGTGTCAATGGCAGCATACA+GGG | - | chr8.1:12632921-12632940 | MS.gene036814:intron | 45.0% | |
| TTACCGACACCTATGTTGCA+TGG | + | chr8.1:12634338-12634357 | None:intergenic | 45.0% | |
| TTCTCCATGAGCAAAGTGAC+AGG | + | chr8.1:12632966-12632985 | None:intergenic | 45.0% | |
| TTCTTCATGAGGATCCTGCT+AGG | - | chr8.1:12632747-12632766 | MS.gene036814:intron | 45.0% | |
| ! | AAAAGCAGTCACTTCGGTGT+GGG | + | chr8.1:12634363-12634382 | None:intergenic | 45.0% |
| ! | CTACAGGTTGGAATATCGTC+TGG | + | chr8.1:12632263-12632282 | None:intergenic | 45.0% |
| ! | GAGGGCATATCAATCCACTA+GGG | + | chr8.1:12632412-12632431 | None:intergenic | 45.0% |
| ! | GTTGAGGCTTTTGGTGAAGT+TGG | + | chr8.1:12634940-12634959 | None:intergenic | 45.0% |
| ! | TCTTCATCCCAATTTGGTGG+TGG | + | chr8.1:12632647-12632666 | None:intergenic | 45.0% |
| ! | TGATAATGCTGCCCTATTGG+AGG | - | chr8.1:12633490-12633509 | MS.gene036814:intron | 45.0% |
| ! | TTCCTGACAATGGGGTTGAT+GGG | + | chr8.1:12633729-12633748 | None:intergenic | 45.0% |
| !! | ATCTGGCTTGTTTCCACCAT+AGG | - | chr8.1:12633406-12633425 | MS.gene036814:intron | 45.0% |
| !! | TCTCCAAAGTCTTTTGGGGA+TGG | - | chr8.1:12632830-12632849 | MS.gene036814:intron | 45.0% |
| !!! | GATTTTATTTTTTTAAATAA+AGG | + | chr8.1:12634700-12634719 | None:intergenic | 5.0% |
| AAAGTGACAGGTCTCCCCAA+AGG | + | chr8.1:12632954-12632973 | None:intergenic | 50.0% | |
| AACGGCTTCAGATGGAGACA+AGG | - | chr8.1:12632618-12632637 | MS.gene036814:intron | 50.0% | |
| AAGGCAAAGGGGCAACAAAC+AGG | + | chr8.1:12633225-12633244 | None:intergenic | 50.0% | |
| AAGGCAGCCACCACCAAATT+GGG | - | chr8.1:12632637-12632656 | MS.gene036814:intron | 50.0% | |
| AAGTGACAGGTCTCCCCAAA+GGG | + | chr8.1:12632953-12632972 | None:intergenic | 50.0% | |
| AGCAATTCTCGCCCTCTTGA+AGG | + | chr8.1:12632378-12632397 | None:intergenic | 50.0% | |
| ATACAGGGAGCTGTCCCTTT+GGG | - | chr8.1:12632936-12632955 | MS.gene036814:intron | 50.0% | |
| CAAAGGGGCAACAAACAGGA+GGG | + | chr8.1:12633221-12633240 | None:intergenic | 50.0% | |
| CACTTTGCTCATGGAGAAGC+AGG | - | chr8.1:12632968-12632987 | MS.gene036814:intron | 50.0% | |
| CATGACAAAGGAAGAGGAGC+AGG | - | chr8.1:12635005-12635024 | MS.gene036814:CDS | 50.0% | |
| CCCGAATCTGCACTAAGTTC+AGG | - | chr8.1:12632489-12632508 | MS.gene036814:intron | 50.0% | |
| CTGAGCCACATTCCTTCAAG+AGG | - | chr8.1:12632363-12632382 | MS.gene036814:CDS | 50.0% | |
| CTGTGTCAATGGCAGCATAC+AGG | - | chr8.1:12632920-12632939 | MS.gene036814:intron | 50.0% | |
| GCTGATAACAATCCCCCTAG+TGG | - | chr8.1:12632395-12632414 | MS.gene036814:CDS | 50.0% | |
| GGAGGCTGAATCATCCTTGA+AGG | + | chr8.1:12632434-12632453 | None:intergenic | 50.0% | |
| GGCTGAATCATCCTTGAAGG+AGG | + | chr8.1:12632431-12632450 | None:intergenic | 50.0% | |
| GGGCATATCAATCCACTAGG+GGG | + | chr8.1:12632410-12632429 | None:intergenic | 50.0% | |
| TCAGAGTTACAAGCTCCTGG+TGG | - | chr8.1:12634859-12634878 | MS.gene036814:CDS | 50.0% | |
| TTCCAATAAGCGCTCCTTGC+TGG | + | chr8.1:12632893-12632912 | None:intergenic | 50.0% | |
| TTCCCATCAACCCCATTGTC+AGG | - | chr8.1:12633724-12633743 | MS.gene036814:intron | 50.0% | |
| TTCCGCGAAGACAAGGCAAA+GGG | + | chr8.1:12633237-12633256 | None:intergenic | 50.0% | |
| TTGATCCTCGCAACGACGAA+CGG | - | chr8.1:12632600-12632619 | MS.gene036814:intron | 50.0% | |
| TTGGATGAAGCAAACTGCGG+TGG | + | chr8.1:12632293-12632312 | None:intergenic | 50.0% | |
| TTTCCGCGAAGACAAGGCAA+AGG | + | chr8.1:12633238-12633257 | None:intergenic | 50.0% | |
| ! | ATAGCGGGGCTACTGCATAT+AGG | + | chr8.1:12633655-12633674 | None:intergenic | 50.0% |
| ! | ATGCTGCTTGTTCCTCGGTT+TGG | + | chr8.1:12632458-12632477 | None:intergenic | 50.0% |
| ! | GCAACACCTGTTGAGGCTTT+TGG | + | chr8.1:12634949-12634968 | None:intergenic | 50.0% |
| ! | GGAGGGCATATCAATCCACT+AGG | + | chr8.1:12632413-12632432 | None:intergenic | 50.0% |
| !! | GAGACCTGTCACTTTGCTCA+TGG | - | chr8.1:12632959-12632978 | MS.gene036814:intron | 50.0% |
| ACTAGCTCCTGCCAATTCCG+CGG | + | chr8.1:12632581-12632600 | None:intergenic | 55.0% | |
| AGGCACTTTCCGCGAAGACA+AGG | + | chr8.1:12633244-12633263 | None:intergenic | 55.0% | |
| ATGAGATAAGGCAGCCACCG+CGG | - | chr8.1:12632561-12632580 | MS.gene036814:intron | 55.0% | |
| ATTCAGCCTCCACCAAACCG+AGG | - | chr8.1:12632443-12632462 | MS.gene036814:CDS | 55.0% | |
| CAACGACGAACGGCTTCAGA+TGG | - | chr8.1:12632610-12632629 | MS.gene036814:intron | 55.0% | |
| CAAGGCAGCCACCACCAAAT+TGG | - | chr8.1:12632636-12632655 | MS.gene036814:intron | 55.0% | |
| CATACAGGGAGCTGTCCCTT+TGG | - | chr8.1:12632935-12632954 | MS.gene036814:intron | 55.0% | |
| CATGGCATTGCAGCCTATGG+TGG | + | chr8.1:12633422-12633441 | None:intergenic | 55.0% | |
| CCAGCTACCATAGGCTGCAA+TGG | - | chr8.1:12633376-12633395 | MS.gene036814:intron | 55.0% | |
| CCATTGCAGCCTATGGTAGC+TGG | + | chr8.1:12633379-12633398 | None:intergenic | 55.0% | |
| CTCACGGGGCTGATGAGATA+AGG | - | chr8.1:12632549-12632568 | MS.gene036814:intron | 55.0% | |
| CTCGCCCTCTTGAAGGAATG+TGG | + | chr8.1:12632371-12632390 | None:intergenic | 55.0% | |
| GAGTTACAAGCTCCTGGTGG+AGG | - | chr8.1:12634862-12634881 | MS.gene036814:CDS | 55.0% | |
| GCAAAGGGGCAACAAACAGG+AGG | + | chr8.1:12633222-12633241 | None:intergenic | 55.0% | |
| GGTGGTGACATCCTACAGGT+TGG | + | chr8.1:12632275-12632294 | None:intergenic | 55.0% | |
| TACAGGGAGCTGTCCCTTTG+GGG | - | chr8.1:12632937-12632956 | MS.gene036814:intron | 55.0% | |
| TCAGCTTCAATGCCTCCACC+AGG | + | chr8.1:12634877-12634896 | None:intergenic | 55.0% | |
| TCCGCGAAGACAAGGCAAAG+GGG | + | chr8.1:12633236-12633255 | None:intergenic | 55.0% | |
| !! | AGCCAGCAAGGAGCGCTTAT+TGG | - | chr8.1:12632888-12632907 | MS.gene036814:intron | 55.0% |
| !! | CTGCTTGTTCCTCGGTTTGG+TGG | + | chr8.1:12632455-12632474 | None:intergenic | 55.0% |
| !! | CTTGTTCCTCGGTTTGGTGG+AGG | + | chr8.1:12632452-12632471 | None:intergenic | 55.0% |
| CTGCGGTGGTGACATCCTAC+AGG | + | chr8.1:12632279-12632298 | None:intergenic | 60.0% | |
| GCCCCTTTGCCTTGTCTTCG+CGG | - | chr8.1:12633232-12633251 | MS.gene036814:intron | 60.0% | |
| GGGCTGTGAACAAGCCAGCA+AGG | - | chr8.1:12632876-12632895 | MS.gene036814:intron | 60.0% | |
| TAAGGCAGCCACCGCGGAAT+TGG | - | chr8.1:12632567-12632586 | MS.gene036814:intron | 60.0% | |
| TGAAGCCGTTCGTCGTTGCG+AGG | + | chr8.1:12632608-12632627 | None:intergenic | 60.0% | |
| AGCTCCTGCCAATTCCGCGG+TGG | + | chr8.1:12632578-12632597 | None:intergenic | 65.0% | |
| GCAGCCACCGCGGAATTGGC+AGG | - | chr8.1:12632571-12632590 | MS.gene036814:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 12632251 | 12635104 | 12632251 | ID=MS.gene036814 |
| chr8.1 | mRNA | 12632251 | 12635104 | 12632251 | ID=MS.gene036814.t1;Parent=MS.gene036814 |
| chr8.1 | exon | 12634366 | 12635104 | 12634366 | ID=MS.gene036814.t1.exon1;Parent=MS.gene036814.t1 |
| chr8.1 | CDS | 12634366 | 12635104 | 12634366 | ID=cds.MS.gene036814.t1;Parent=MS.gene036814.t1 |
| chr8.1 | exon | 12632251 | 12632492 | 12632251 | ID=MS.gene036814.t1.exon2;Parent=MS.gene036814.t1 |
| chr8.1 | CDS | 12632251 | 12632492 | 12632251 | ID=cds.MS.gene036814.t1;Parent=MS.gene036814.t1 |
| Gene Sequence |
| Protein sequence |
