AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036822

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036822.t1 MTR_4g113860 85.802 324 39 3 1 320 1 321 0.0 569
MS.gene036822.t1 MTR_4g113970 59.690 258 79 6 1 241 1 250 2.24e-106 311
MS.gene036822.t1 MTR_4g113940 49.186 307 118 7 1 306 1 270 1.20e-94 281
MS.gene036822.t1 MTR_4g113890 42.295 305 101 5 1 305 1 230 8.73e-74 227
MS.gene036822.t1 MTR_3g050390 46.545 275 101 9 51 319 7 241 1.27e-72 224
MS.gene036822.t1 MTR_8g066730 29.139 302 132 7 77 306 83 374 4.13e-27 109
MS.gene036822.t1 MTR_8g066730 31.628 215 87 5 77 241 83 287 6.58e-21 91.3
MS.gene036822.t1 MTR_3g466460 64.474 76 24 2 240 314 29 102 4.05e-19 82.4
MS.gene036822.t1 MTR_4g113980 61.429 70 23 3 239 306 23 90 6.14e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036822.t1 AT3G19360 38.390 323 132 11 49 309 59 376 3.82e-62 202
MS.gene036822.t1 AT3G19360 38.390 323 132 11 49 309 59 376 3.82e-62 202
MS.gene036822.t1 AT1G32360 25.939 293 149 5 82 306 90 382 2.78e-20 90.9
MS.gene036822.t1 AT2G35430 26.178 191 112 4 139 306 66 250 1.42e-13 69.7

Find 84 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGATCAATCGTGTTTA+TGG 0.098083 8.1:-12696075 MS.gene036822:CDS
TCCTTTGCCACAAGTCTTGC+AGG 0.252708 8.1:+12696141 None:intergenic
GACAGCAGCAGCTGAGAAAT+TGG 0.269527 8.1:-12698030 MS.gene036822:CDS
ATTGGTTCTTCAAAGTCATT+TGG 0.270173 8.1:-12697842 MS.gene036822:CDS
ATGAGGATCCTGCTAAGTTT+AGG 0.284721 8.1:-12697913 MS.gene036822:CDS
TCTATAAGCATTGGGGCTAT+TGG 0.301858 8.1:-12697860 MS.gene036822:CDS
TAAGACTGCCACCACGAAAT+TGG 0.308491 8.1:-12698084 MS.gene036822:CDS
TTGGTTCTTCAAAGTCATTT+GGG 0.308872 8.1:-12697841 MS.gene036822:CDS
GATGGAGGAAGAACCATCTT+TGG 0.330810 8.1:+12698214 None:intergenic
TGAGGATCCTGCTAAGTTTA+GGG 0.331108 8.1:-12697912 MS.gene036822:CDS
TCCACTGCACTTGGCAAGTT+GGG 0.333885 8.1:+12696021 None:intergenic
AATGGTGAGAAATGTTTCTT+TGG 0.334123 8.1:-12697956 MS.gene036822:CDS
TTGCGGCGGTGACATCTTAC+AGG 0.346131 8.1:+12698393 None:intergenic
AGCCAGCTAGAGGCACTTAT+TGG 0.353667 8.1:-12697808 MS.gene036822:CDS
ACTTCACGAAAAGCCTTAAC+AGG 0.358557 8.1:-12696198 MS.gene036822:CDS
TCAATCGTGTTTATGGTGAT+TGG 0.369324 8.1:-12696068 MS.gene036822:CDS
ATCAAGGGAGATGTCCCTTT+GGG 0.372752 8.1:-12697757 MS.gene036822:CDS
GCTAAGTTTAGGGATCATTC+TGG 0.384575 8.1:-12697902 MS.gene036822:CDS
TTCAAAGTCATTTGGGGCTG+TGG 0.389237 8.1:-12697834 MS.gene036822:CDS
ACGTGGTCTGCTCTGTTTGA+TGG 0.398666 8.1:+12698196 None:intergenic
ATCAACCCCATTCCTTCAAA+AGG 0.402198 8.1:-12698285 MS.gene036822:CDS
AGTGTTCTTCTATAAGCATT+GGG 0.403399 8.1:-12697868 MS.gene036822:CDS
AAAGAAACATTTCTCACCAT+TGG 0.440730 8.1:+12697958 None:intergenic
TTACAGGTTGGAATATTGTC+TGG 0.446583 8.1:+12698409 None:intergenic
TTAAGAAGATGCATTTACTT+TGG 0.454114 8.1:-12696107 MS.gene036822:CDS
CTCCACTGCACTTGGCAAGT+TGG 0.458746 8.1:+12696020 None:intergenic
ATCATTGGCAGAACCTGTTA+AGG 0.460853 8.1:+12696185 None:intergenic
CATCAAGGGAGATGTCCCTT+TGG 0.465946 8.1:-12697758 MS.gene036822:CDS
TGCCACAAGTCTTGCAGGGA+AGG 0.471441 8.1:+12696146 None:intergenic
ACAGCAGCAGCTGAGAAATT+GGG 0.480050 8.1:-12698029 MS.gene036822:CDS
CCCTGCAAGACTTGTGGCAA+AGG 0.480562 8.1:-12696142 MS.gene036822:CDS
GGTAGGTGCATATGCATCAT+TGG 0.482923 8.1:+12696170 None:intergenic
GATATGCCCTCCTCCAAAGA+TGG 0.484001 8.1:-12698227 MS.gene036822:CDS
CTAAGTTTAGGGATCATTCT+GGG 0.485241 8.1:-12697901 MS.gene036822:CDS
TGCTGTCCGTCGCTGCTGCA+AGG 0.486679 8.1:+12698046 None:intergenic
AAAGATTGCAACTTTGCTCA+TGG 0.488168 8.1:-12698118 MS.gene036822:CDS
GTTTCTACAAGTACCAAGTC+TGG 0.493005 8.1:+12698144 None:intergenic
AAGATTGCAACTTTGCTCAT+GGG 0.501520 8.1:-12698117 MS.gene036822:CDS
TTCCAATAAGTGCCTCTAGC+TGG 0.502818 8.1:+12697806 None:intergenic
AGTCAGTTCTCCACTGCACT+TGG 0.503719 8.1:+12696012 None:intergenic
TTCACAAGATGAAGCTATGC+AGG 0.506731 8.1:-12697988 MS.gene036822:CDS
CAATTTGCTCATGGAGAAGC+AGG 0.507401 8.1:-12697725 MS.gene036822:intron
ATCTCCCTTGATGCTGCCAA+TGG 0.509822 8.1:+12697768 None:intergenic
AGACTAAGACGTGTTTCCAT+TGG 0.510007 8.1:-12697784 MS.gene036822:CDS
GAATGATCCCTAAACTTAGC+AGG 0.515278 8.1:+12697905 None:intergenic
GAGTGTTCTTCTATAAGCAT+TGG 0.515583 8.1:-12697869 MS.gene036822:CDS
GTTTCCATTGGCAGCATCAA+GGG 0.516368 8.1:-12697772 MS.gene036822:CDS
AGACTTGGTACTTGTAGAAA+CGG 0.521320 8.1:-12698142 MS.gene036822:CDS
GAGGACTGTCAATTTGCTCA+TGG 0.526443 8.1:-12697734 MS.gene036822:CDS
AAGACTTGTGGCAAAGGAAG+AGG 0.529531 8.1:-12696136 MS.gene036822:CDS
TGTTTCCATTGGCAGCATCA+AGG 0.535568 8.1:-12697773 MS.gene036822:CDS
TGTGGCAAAGGAAGAGGAGC+AGG 0.535571 8.1:-12696130 MS.gene036822:CDS
ACTAGCTCCTGCCAATTTCG+TGG 0.541649 8.1:+12698073 None:intergenic
TGGTTCTTCAAAGTCATTTG+GGG 0.545756 8.1:-12697840 MS.gene036822:CDS
CCTTTGCCACAAGTCTTGCA+GGG 0.547135 8.1:+12696142 None:intergenic
AGATTGCAACTTTGCTCATG+GGG 0.548831 8.1:-12698116 MS.gene036822:CDS
TCCCAACTTGCCAAGTGCAG+TGG 0.549943 8.1:-12696022 MS.gene036822:CDS
AGGAGGGCATATCAAAGCAT+TGG 0.555491 8.1:+12698237 None:intergenic
ACTGCCACCACGAAATTGGC+AGG 0.556769 8.1:-12698080 MS.gene036822:CDS
GGAAGAACCATCTTTGGAGG+AGG 0.559899 8.1:+12698220 None:intergenic
AATTGACAGTCCTCCCCAAA+GGG 0.560613 8.1:+12697743 None:intergenic
TCAACCCCATTCCTTCAAAA+GGG 0.563397 8.1:-12698284 MS.gene036822:CDS
GGAGGAAGAACCATCTTTGG+AGG 0.566069 8.1:+12698217 None:intergenic
CACCTTCCCTGCAAGACTTG+TGG 0.570439 8.1:-12696148 MS.gene036822:CDS
GTCTGTAATAAGTCCAGACT+TGG 0.573982 8.1:-12698157 MS.gene036822:CDS
CACAAGTCTTGCAGGGAAGG+TGG 0.574444 8.1:+12696149 None:intergenic
GTTAGTCCTTGCAGCAGCGA+CGG 0.584359 8.1:-12698052 MS.gene036822:CDS
AGTCTTGCAGGGAAGGTGGT+AGG 0.597135 8.1:+12696153 None:intergenic
GGCGGTGACATCTTACAGGT+TGG 0.597501 8.1:+12698397 None:intergenic
GGCAAGTTGGGAAGAACAAG+AGG 0.612688 8.1:+12696033 None:intergenic
GCTGTGGACAAGCCAGCTAG+AGG 0.623188 8.1:-12697818 MS.gene036822:CDS
AAATTGACAGTCCTCCCCAA+AGG 0.626382 8.1:+12697742 None:intergenic
CTGTTTGATGTAGTGAATTG+CGG 0.628943 8.1:+12698376 None:intergenic
GAAGAACCATCTTTGGAGGA+GGG 0.630074 8.1:+12698221 None:intergenic
CACGAGTCTTGTAGAAAACG+TGG 0.640632 8.1:+12698179 None:intergenic
AGGGAGATGTCCCTTTGGGG+AGG 0.652421 8.1:-12697753 MS.gene036822:CDS
CTATGCAGGATGTATTCCAA+TGG 0.653635 8.1:-12697974 MS.gene036822:CDS
GTGTTCTTCTATAAGCATTG+GGG 0.654358 8.1:-12697867 MS.gene036822:CDS
TGGTCTGCTCTGTTTGATGG+AGG 0.659565 8.1:+12698199 None:intergenic
TCAAGGGAGATGTCCCTTTG+GGG 0.666746 8.1:-12697756 MS.gene036822:CDS
AGCTCCTGCCAATTTCGTGG+TGG 0.669372 8.1:+12698076 None:intergenic
GCAGCAGCTGAGAAATTGGG+AGG 0.680326 8.1:-12698026 MS.gene036822:CDS
TTTGATGTAGTGAATTGCGG+CGG 0.699237 8.1:+12698379 None:intergenic
AATATTGTCTGGAAGAACCA+TGG 0.708668 8.1:+12698420 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGCAATATATATTAAAAAA+AGG + chr8.1:12698066-12698085 None:intergenic 10.0%
!! AAAAGATGAATATAACATAA+TGG + chr8.1:12697823-12697842 None:intergenic 15.0%
!! CAAAATCAATAATCAAAATA+GGG + chr8.1:12696768-12696787 None:intergenic 15.0%
!!! ATCCATTTACAAATTTTTTA+TGG + chr8.1:12697318-12697337 None:intergenic 15.0%
!!! TTAATCATCTCAATTTTATA+AGG - chr8.1:12697536-12697555 MS.gene036822:intron 15.0%
!!! TTTTAACAATTTAAACTGTT+TGG - chr8.1:12698139-12698158 MS.gene036822:CDS 15.0%
!! AATAATCAAAATAGGGAAAA+GGG + chr8.1:12696761-12696780 None:intergenic 20.0%
!! AGCCATAAAAAATTTGTAAA+TGG - chr8.1:12697313-12697332 MS.gene036822:intron 20.0%
!! ATATGATGTTCAAATTATAG+TGG - chr8.1:12696882-12696901 MS.gene036822:intron 20.0%
!! CCAAAATCAATAATCAAAAT+AGG + chr8.1:12696769-12696788 None:intergenic 20.0%
!!! CCTATTTTGATTATTGATTT+TGG - chr8.1:12696766-12696785 MS.gene036822:intron 20.0%
!!! GTGTTTATATGTTGTATTTT+TGG - chr8.1:12697371-12697390 MS.gene036822:intron 20.0%
!!! TATTTTTATGTATTGGATCA+CGG + chr8.1:12697779-12697798 None:intergenic 20.0%
!!! TCACATGTATTTTTATGTAT+TGG + chr8.1:12697786-12697805 None:intergenic 20.0%
! AAAACTGTGTTGTCAAATAT+CGG - chr8.1:12696992-12697011 MS.gene036822:intron 25.0%
! AAAGATAAAGTAATCACTAG+TGG + chr8.1:12697158-12697177 None:intergenic 25.0%
! AAGGCATGATTACTATTAAA+TGG - chr8.1:12697555-12697574 MS.gene036822:intron 25.0%
! CAATAATCAAAATAGGGAAA+AGG + chr8.1:12696762-12696781 None:intergenic 25.0%
! CATATTTGACTGCAATATTA+AGG + chr8.1:12697975-12697994 None:intergenic 25.0%
! CTTAATATTGCAGTCAAATA+TGG - chr8.1:12697973-12697992 MS.gene036822:CDS 25.0%
! TCAAATAGAAATTCCTAATG+TGG + chr8.1:12697484-12697503 None:intergenic 25.0%
! TCCAATGAAAAATGAAAACT+TGG - chr8.1:12696106-12696125 MS.gene036822:CDS 25.0%
! TGAGTTAGACATCAAATTAT+AGG + chr8.1:12697892-12697911 None:intergenic 25.0%
! TTAAGAAGATGCATTTACTT+TGG - chr8.1:12698325-12698344 MS.gene036822:CDS 25.0%
!! TACATATCAGTGTTGTTAAA+TGG - chr8.1:12697251-12697270 MS.gene036822:intron 25.0%
!! TATATGTCGATGGATATTTT+GGG - chr8.1:12697746-12697765 MS.gene036822:CDS 25.0%
!!! TAAGTGTTATTTTCTTCATG+AGG - chr8.1:12696502-12696521 MS.gene036822:intron 25.0%
!!! TCCAAGTTTTCATTTTTCAT+TGG + chr8.1:12696110-12696129 None:intergenic 25.0%
!!! TGACTGAAATTTTAGTAGTT+TGG - chr8.1:12697602-12697621 MS.gene036822:intron 25.0%
AAAGAAACATTTCTCACCAT+TGG + chr8.1:12696477-12696496 None:intergenic 30.0%
AACAAGATCAATCGTGTTTA+TGG - chr8.1:12698357-12698376 MS.gene036822:CDS 30.0%
AATGGTGAGAAATGTTTCTT+TGG - chr8.1:12696476-12696495 MS.gene036822:intron 30.0%
ACAACTGCTATGTTTATCTA+AGG - chr8.1:12697226-12697245 MS.gene036822:intron 30.0%
AGTGTTCTTCTATAAGCATT+GGG - chr8.1:12696564-12696583 MS.gene036822:intron 30.0%
ATCATATAATTCTGCTGTAC+TGG - chr8.1:12696793-12696812 MS.gene036822:intron 30.0%
CAATATTAAGGATTGTGACA+TGG + chr8.1:12697963-12697982 None:intergenic 30.0%
CTTGTCGGATAAAAAAAAGT+AGG - chr8.1:12697709-12697728 MS.gene036822:intron 30.0%
CTTTATAGCTGATAACAGAA+AGG + chr8.1:12697647-12697666 None:intergenic 30.0%
TGTTATCAGCTATAAAGCAT+GGG - chr8.1:12697650-12697669 MS.gene036822:intron 30.0%
! ATTGGTTCTTCAAAGTCATT+TGG - chr8.1:12696590-12696609 MS.gene036822:intron 30.0%
! GCGTATGATATTTTCATGTT+TGG - chr8.1:12696930-12696949 MS.gene036822:intron 30.0%
! GTATATGTCGATGGATATTT+TGG - chr8.1:12697745-12697764 MS.gene036822:CDS 30.0%
! TTGGTTCTTCAAAGTCATTT+GGG - chr8.1:12696591-12696610 MS.gene036822:intron 30.0%
!! CTAACTCATCAATAGTTTTG+AGG - chr8.1:12697904-12697923 MS.gene036822:CDS 30.0%
!! TCATTTTTCATTGGAAATCG+AGG + chr8.1:12696101-12696120 None:intergenic 30.0%
AAAGATTGCAACTTTGCTCA+TGG - chr8.1:12696314-12696333 MS.gene036822:intron 35.0%
AAGATTGCAACTTTGCTCAT+GGG - chr8.1:12696315-12696334 MS.gene036822:intron 35.0%
AGGAAAAGGAAAAACAGGTT+TGG + chr8.1:12697846-12697865 None:intergenic 35.0%
ATGAGTCAGAATACGATACA+TGG + chr8.1:12698168-12698187 None:intergenic 35.0%
CATAACCATCCTTCACAAAT+TGG + chr8.1:12697052-12697071 None:intergenic 35.0%
CCAAAAGGAAAAGGAAAAAC+AGG + chr8.1:12697851-12697870 None:intergenic 35.0%
CTAAGTTTAGGGATCATTCT+GGG - chr8.1:12696531-12696550 MS.gene036822:intron 35.0%
CTGTTATCAGCTATAAAGCA+TGG - chr8.1:12697649-12697668 MS.gene036822:intron 35.0%
CTGTTTGATGTAGTGAATTG+CGG + chr8.1:12696059-12696078 None:intergenic 35.0%
GAGTGTTCTTCTATAAGCAT+TGG - chr8.1:12696563-12696582 MS.gene036822:intron 35.0%
GGATCGTTAAATATACTGGA+AGG + chr8.1:12697397-12697416 None:intergenic 35.0%
GTATATTTAACGATCCTCCA+TGG - chr8.1:12697401-12697420 MS.gene036822:intron 35.0%
TAAACCAGTGTTAACGATGA+CGG + chr8.1:12697124-12697143 None:intergenic 35.0%
TCAATCGTGTTTATGGTGAT+TGG - chr8.1:12698364-12698383 MS.gene036822:CDS 35.0%
TCTTTGTGTTCAAATTTCCG+TGG - chr8.1:12697173-12697192 MS.gene036822:intron 35.0%
TGGAGGATCGTTAAATATAC+TGG + chr8.1:12697401-12697420 None:intergenic 35.0%
TGGTTCTTCAAAGTCATTTG+GGG - chr8.1:12696592-12696611 MS.gene036822:intron 35.0%
! AGAAATTCTTGCCCTTTTGA+AGG + chr8.1:12696162-12696181 None:intergenic 35.0%
! AGACTTGGTACTTGTAGAAA+CGG - chr8.1:12696290-12696309 MS.gene036822:intron 35.0%
! ATATCAATGTGTTGCTACCA+CGG + chr8.1:12697193-12697212 None:intergenic 35.0%
! ATTTTCGTGTCAACCACATT+AGG - chr8.1:12697468-12697487 MS.gene036822:intron 35.0%
! GTGTTCTTCTATAAGCATTG+GGG - chr8.1:12696565-12696584 MS.gene036822:intron 35.0%
! TTACAGGTTGGAATATTGTC+TGG + chr8.1:12696026-12696045 None:intergenic 35.0%
!! CCTGTTTTTCCTTTTCCTTT+TGG - chr8.1:12697848-12697867 MS.gene036822:CDS 35.0%
!! TAGGTATCGAAATTGCTTGT+CGG - chr8.1:12697694-12697713 MS.gene036822:intron 35.0%
AAAAGTAGGATGCTGCACTT+TGG - chr8.1:12697723-12697742 MS.gene036822:intron 40.0%
AAACACACCATTGTGACCTA+TGG + chr8.1:12697357-12697376 None:intergenic 40.0%
AAACGTCTATGCAACAATCG+TGG - chr8.1:12698033-12698052 MS.gene036822:CDS 40.0%
ACTGTGTTGTCAAATATCGG+CGG - chr8.1:12696995-12697014 MS.gene036822:intron 40.0%
ACTTCACGAAAAGCCTTAAC+AGG - chr8.1:12698234-12698253 MS.gene036822:CDS 40.0%
AGACTAAGACGTGTTTCCAT+TGG - chr8.1:12696648-12696667 MS.gene036822:intron 40.0%
AGATTGCAACTTTGCTCATG+GGG - chr8.1:12696316-12696335 MS.gene036822:intron 40.0%
ATCAACCCCATTCCTTCAAA+AGG - chr8.1:12696147-12696166 MS.gene036822:CDS 40.0%
ATCATTGGCAGAACCTGTTA+AGG + chr8.1:12698250-12698269 None:intergenic 40.0%
ATGAGGATCCTGCTAAGTTT+AGG - chr8.1:12696519-12696538 MS.gene036822:intron 40.0%
CAGCAGAAACCAAAAGGAAA+AGG + chr8.1:12697860-12697879 None:intergenic 40.0%
CTATGCAGGATGTATTCCAA+TGG - chr8.1:12696458-12696477 MS.gene036822:intron 40.0%
GAATGATCCCTAAACTTAGC+AGG + chr8.1:12696530-12696549 None:intergenic 40.0%
GCTAAGTTTAGGGATCATTC+TGG - chr8.1:12696530-12696549 MS.gene036822:intron 40.0%
GTCTGTAATAAGTCCAGACT+TGG - chr8.1:12696275-12696294 MS.gene036822:intron 40.0%
GTTTCTACAAGTACCAAGTC+TGG + chr8.1:12696291-12696310 None:intergenic 40.0%
TCAACCCCATTCCTTCAAAA+GGG - chr8.1:12696148-12696167 MS.gene036822:CDS 40.0%
TGAGGATCCTGCTAAGTTTA+GGG - chr8.1:12696520-12696539 MS.gene036822:intron 40.0%
TGCACTTTGGTATATGTCGA+TGG - chr8.1:12697736-12697755 MS.gene036822:CDS 40.0%
TTCACAAGATGAAGCTATGC+AGG - chr8.1:12696444-12696463 MS.gene036822:intron 40.0%
TTTGATGTAGTGAATTGCGG+CGG + chr8.1:12696056-12696075 None:intergenic 40.0%
! CGGTCAAATGGCAGATTTTT+AGG - chr8.1:12697015-12697034 MS.gene036822:intron 40.0%
! GTTAAGGCTTTTCGTGAAGT+TGG + chr8.1:12698234-12698253 None:intergenic 40.0%
!! TCTATAAGCATTGGGGCTAT+TGG - chr8.1:12696572-12696591 MS.gene036822:intron 40.0%
!! TCTTGCCCTTTTGAAGGAAT+GGG + chr8.1:12696156-12696175 None:intergenic 40.0%
!! TTCTTGCCCTTTTGAAGGAA+TGG + chr8.1:12696157-12696176 None:intergenic 40.0%
!!! TCCTTTTGGTTTCTGCTGAT+GGG - chr8.1:12697862-12697881 MS.gene036822:CDS 40.0%
!!! TTCCTTTTGGTTTCTGCTGA+TGG - chr8.1:12697861-12697880 MS.gene036822:CDS 40.0%
AAATTGACAGTCCTCCCCAA+AGG + chr8.1:12696693-12696712 None:intergenic 45.0%
AAGACTTGTGGCAAAGGAAG+AGG - chr8.1:12698296-12698315 MS.gene036822:CDS 45.0%
AATTGACAGTCCTCCCCAAA+GGG + chr8.1:12696692-12696711 None:intergenic 45.0%
ACAGCAGCAGCTGAGAAATT+GGG - chr8.1:12696403-12696422 MS.gene036822:intron 45.0%
ACCCATCAGCAGAAACCAAA+AGG + chr8.1:12697866-12697885 None:intergenic 45.0%
ATCAAGGGAGATGTCCCTTT+GGG - chr8.1:12696675-12696694 MS.gene036822:intron 45.0%
CATCCTTCACAAATTGGCCA+TGG + chr8.1:12697046-12697065 None:intergenic 45.0%
CATGGCCAATTTGTGAAGGA+TGG - chr8.1:12697044-12697063 MS.gene036822:intron 45.0%
GATGGAGGAAGAACCATCTT+TGG + chr8.1:12696221-12696240 None:intergenic 45.0%
GGTAGGTGCATATGCATCAT+TGG + chr8.1:12698265-12698284 None:intergenic 45.0%
GTCAAATATCGGCGGTCAAA+TGG - chr8.1:12697003-12697022 MS.gene036822:intron 45.0%
GTTTCCATTGGCAGCATCAA+GGG - chr8.1:12696660-12696679 MS.gene036822:intron 45.0%
TAAGACTGCCACCACGAAAT+TGG - chr8.1:12696348-12696367 MS.gene036822:intron 45.0%
TAAGCCACCATAAAACGCCA+TGG + chr8.1:12697075-12697094 None:intergenic 45.0%
TCTGCCACACTATTCTGTCT+TGG + chr8.1:12697282-12697301 None:intergenic 45.0%
TGTGAAGGATGGTTATGCCA+TGG - chr8.1:12697055-12697074 MS.gene036822:intron 45.0%
TGTTTCCATTGGCAGCATCA+AGG - chr8.1:12696659-12696678 MS.gene036822:intron 45.0%
TTCCAATAAGTGCCTCTAGC+TGG + chr8.1:12696629-12696648 None:intergenic 45.0%
! AGGAGGGCATATCAAAGCAT+TGG + chr8.1:12696198-12696217 None:intergenic 45.0%
! CAATTTGCTCATGGAGAAGC+AGG - chr8.1:12696707-12696726 MS.gene036822:intron 45.0%
! CACGAGTCTTGTAGAAAACG+TGG + chr8.1:12696256-12696275 None:intergenic 45.0%
! GAAGAACCATCTTTGGAGGA+GGG + chr8.1:12696214-12696233 None:intergenic 45.0%
! GAGGACTGTCAATTTGCTCA+TGG - chr8.1:12696698-12696717 MS.gene036822:intron 45.0%
! GGTTATGCCATGGCGTTTTA+TGG - chr8.1:12697065-12697084 MS.gene036822:intron 45.0%
! TATGCCATGGCGTTTTATGG+TGG - chr8.1:12697068-12697087 MS.gene036822:intron 45.0%
! TTCAAAGTCATTTGGGGCTG+TGG - chr8.1:12696598-12696617 MS.gene036822:intron 45.0%
!! CTTGCCCTTTTGAAGGAATG+GGG + chr8.1:12696155-12696174 None:intergenic 45.0%
!!! CAGATTTTTAGGAAGCGCCA+TGG - chr8.1:12697026-12697045 MS.gene036822:intron 45.0%
ACCTACTTGCGTAACCACCA+CGG + chr8.1:12697679-12697698 None:intergenic 50.0%
ACGTGGTCTGCTCTGTTTGA+TGG + chr8.1:12696239-12696258 None:intergenic 50.0%
ACTAGCTCCTGCCAATTTCG+TGG + chr8.1:12696362-12696381 None:intergenic 50.0%
AGCGCCAAGACAGAATAGTG+TGG - chr8.1:12697275-12697294 MS.gene036822:intron 50.0%
AGCGTCACCATAGGTCACAA+TGG - chr8.1:12697347-12697366 MS.gene036822:intron 50.0%
AGTGACAGTGTTGTCCATGG+AGG + chr8.1:12697418-12697437 None:intergenic 50.0%
ATCTCCCTTGATGCTGCCAA+TGG + chr8.1:12696667-12696686 None:intergenic 50.0%
CACAGTGACAGTGTTGTCCA+TGG + chr8.1:12697421-12697440 None:intergenic 50.0%
CATCAAGGGAGATGTCCCTT+TGG - chr8.1:12696674-12696693 MS.gene036822:intron 50.0%
CCATCCGTCATCGTTAACAC+TGG - chr8.1:12697117-12697136 MS.gene036822:intron 50.0%
CCTTTGCCACAAGTCTTGCA+GGG + chr8.1:12698293-12698312 None:intergenic 50.0%
CTATAAAGCATGGGTACCCG+TGG - chr8.1:12697659-12697678 MS.gene036822:intron 50.0%
GACAGCAGCAGCTGAGAAAT+TGG - chr8.1:12696402-12696421 MS.gene036822:intron 50.0%
GATATGCCCTCCTCCAAAGA+TGG - chr8.1:12696205-12696224 MS.gene036822:CDS 50.0%
GGAGGAAGAACCATCTTTGG+AGG + chr8.1:12696218-12696237 None:intergenic 50.0%
TCAAGGGAGATGTCCCTTTG+GGG - chr8.1:12696676-12696695 MS.gene036822:intron 50.0%
TCCACTGCACTTGGCAAGTT+GGG + chr8.1:12698414-12698433 None:intergenic 50.0%
TCCTTTGCCACAAGTCTTGC+AGG + chr8.1:12698294-12698313 None:intergenic 50.0%
TGGTCTGCTCTGTTTGATGG+AGG + chr8.1:12696236-12696255 None:intergenic 50.0%
! GGAAGAACCATCTTTGGAGG+AGG + chr8.1:12696215-12696234 None:intergenic 50.0%
! GGCAAGTTGGGAAGAACAAG+AGG + chr8.1:12698402-12698421 None:intergenic 50.0%
!! AGCCAGCTAGAGGCACTTAT+TGG - chr8.1:12696624-12696643 MS.gene036822:intron 50.0%
!! CCAGTGTTAACGATGACGGA+TGG + chr8.1:12697120-12697139 None:intergenic 50.0%
!! GTGTTAACGATGACGGATGG+TGG + chr8.1:12697117-12697136 None:intergenic 50.0%
ACTGCCACCACGAAATTGGC+AGG - chr8.1:12696352-12696371 MS.gene036822:intron 55.0%
AGCTCCTGCCAATTTCGTGG+TGG + chr8.1:12696359-12696378 None:intergenic 55.0%
AGTCTTGCAGGGAAGGTGGT+AGG + chr8.1:12698282-12698301 None:intergenic 55.0%
CACAAGTCTTGCAGGGAAGG+TGG + chr8.1:12698286-12698305 None:intergenic 55.0%
CACCTTCCCTGCAAGACTTG+TGG - chr8.1:12698284-12698303 MS.gene036822:CDS 55.0%
CCCTGCAAGACTTGTGGCAA+AGG - chr8.1:12698290-12698309 MS.gene036822:CDS 55.0%
CCTACTTGCGTAACCACCAC+GGG + chr8.1:12697678-12697697 None:intergenic 55.0%
CTCCACTGCACTTGGCAAGT+TGG + chr8.1:12698415-12698434 None:intergenic 55.0%
GCAGCAGCTGAGAAATTGGG+AGG - chr8.1:12696406-12696425 MS.gene036822:intron 55.0%
GCGCCATGGCCAATTTGTGA+AGG - chr8.1:12697040-12697059 MS.gene036822:intron 55.0%
GGCGGTGACATCTTACAGGT+TGG + chr8.1:12696038-12696057 None:intergenic 55.0%
GTTAGTCCTTGCAGCAGCGA+CGG - chr8.1:12696380-12696399 MS.gene036822:intron 55.0%
TAAAGCATGGGTACCCGTGG+TGG - chr8.1:12697662-12697681 MS.gene036822:intron 55.0%
TCCCAACTTGCCAAGTGCAG+TGG - chr8.1:12698410-12698429 MS.gene036822:CDS 55.0%
TGCAGCTGCAGTTGCAGTGT+CGG - chr8.1:12698000-12698019 MS.gene036822:CDS 55.0%
TGCCACAAGTCTTGCAGGGA+AGG + chr8.1:12698289-12698308 None:intergenic 55.0%
TGTGGCAAAGGAAGAGGAGC+AGG - chr8.1:12698302-12698321 MS.gene036822:CDS 55.0%
TTGCGGCGGTGACATCTTAC+AGG + chr8.1:12696042-12696061 None:intergenic 55.0%
! TGTGACCTATGGTGACGCTG+TGG + chr8.1:12697346-12697365 None:intergenic 55.0%
CCCGTGGTGGTTACGCAAGT+AGG - chr8.1:12697675-12697694 MS.gene036822:intron 60.0%
GCTGTGGACAAGCCAGCTAG+AGG - chr8.1:12696614-12696633 MS.gene036822:intron 60.0%
GTCTGCCACAGCGTCACCAT+AGG - chr8.1:12697338-12697357 MS.gene036822:intron 60.0%
! AGGGAGATGTCCCTTTGGGG+AGG - chr8.1:12696679-12696698 MS.gene036822:intron 60.0%
TGCTGTCCGTCGCTGCTGCA+AGG + chr8.1:12696389-12696408 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 12696014 12698440 12696014 ID=MS.gene036822
chr8.1 mRNA 12696014 12698440 12696014 ID=MS.gene036822.t1;Parent=MS.gene036822
chr8.1 exon 12697726 12698440 12697726 ID=MS.gene036822.t1.exon1;Parent=MS.gene036822.t1
chr8.1 CDS 12697726 12698440 12697726 ID=cds.MS.gene036822.t1;Parent=MS.gene036822.t1
chr8.1 exon 12696014 12696261 12696014 ID=MS.gene036822.t1.exon2;Parent=MS.gene036822.t1
chr8.1 CDS 12696014 12696261 12696014 ID=cds.MS.gene036822.t1;Parent=MS.gene036822.t1
Gene Sequence

>MS.gene036822

ATGGTTCTTCCAGACAATATTCCAACCTGTAAGATGTCACCGCCGCAATTCACTACATCAAACAGCGATATCATTGAAGTGAGACCTCGATTTCCAATGAAAAATGAAAACTTGGAACAACATTCAACATTGTATCAACCCCATTCCTTCAAAAGGGCAAGAATTTCTGATAACAATCGTTCCAATGCTTTGATATGCCCTCCTCCAAAGATGGTTCTTCCTCCATCAAACAGAGCAGACCACGTTTTCTACAAGACTCGTGTCTGTAATAAGTCCAGACTTGGTACTTGTAGAAACGGTAAAGATTGCAACTTTGCTCATGGGGTTGAAGAACTAAGACTGCCACCACGAAATTGGCAGGAGCTAGTTAGTCCTTGCAGCAGCGACGGACAGCAGCAGCTGAGAAATTGGGAGGAAGATCAAAAAATGATTCACAAGATGAAGCTATGCAGGATGTATTCCAATGGTGAGAAATGTTTCTTTGGTAGTAAGTGTTATTTTCTTCATGAGGATCCTGCTAAGTTTAGGGATCATTCTGGGAAGTCAAGAGAGTGTTCTTCTATAAGCATTGGGGCTATTGGTTCTTCAAAGTCATTTGGGGCTGTGGACAAGCCAGCTAGAGGCACTTATTGGAAGACTAAGACGTGTTTCCATTGGCAGCATCAAGGGAGATGTCCCTTTGGGGAGGACTGTCAATTTGCTCATGGAGAAGCAGGTAATAATAACTCATCTTTGTGTTGATTTCCCTTTTCCCTATTTTGATTATTGATTTTGGTTTTATCATATAATTCTGCTGTACTGGTTTTGTTTTGTATAGAGAATATGTTTGTTGATTTTTTTGATGATGTGCAGAAGATCATTTTATGTTATATGATGTTCAAATTATAGTGGTTGAATGTATGTTATTTTCATTGCTGCGTATGATATTTTCATGTTTGGTATGATATTTTGTTCACACAACAAATGCTAATTCAGTTTAAAACTGTGTTGTCAAATATCGGCGGTCAAATGGCAGATTTTTAGGAAGCGCCATGGCCAATTTGTGAAGGATGGTTATGCCATGGCGTTTTATGGTGGCTTAAAATTACACATTTGATTTTCCACCATCCGTCATCGTTAACACTGGTTTAAAATTAATTTACCACTAGTGATTACTTTATCTTTGTGTTCAAATTTCCGTGGTAGCAACACATTGATATGTGAGATTTTGTGACAACTGCTATGTTTATCTAAGGTTTACATATCAGTGTTGTTAAATGGCAGCGCCAAGACAGAATAGTGTGGCAGATTTTTGACGTCAGCCATAAAAAATTTGTAAATGGATGTCTGCCACAGCGTCACCATAGGTCACAATGGTGTGTTTATATGTTGTATTTTTGGCCTTCCAGTATATTTAACGATCCTCCATGGACAACACTGTCACTGTGTTGCATATAACTTGAATGAAGTTCTGTATTTTCGTGTCAACCACATTAGGAATTTCTATTTGATAGAAATGTCTAGATTTCATAAATTAAAATAGTTAATCATCTCAATTTTATAAGGCATGATTACTATTAAATGGTGTTAAAAGTTTGTGTTTGTTACTTGACTGAAATTTTAGTAGTTTGGAGTAGTCTGCGAAAAATTTCCTTTCTGTTATCAGCTATAAAGCATGGGTACCCGTGGTGGTTACGCAAGTAGGTATCGAAATTGCTTGTCGGATAAAAAAAAGTAGGATGCTGCACTTTGGTATATGTCGATGGATATTTTGGGTATGCATCCGTGATCCAATACATAAAAATACATGTGATTTTGAACAATAAACCATTATGTTATATTCATCTTTTCCAAACCTGTTTTTCCTTTTCCTTTTGGTTTCTGCTGATGGGTGTGCCTATAATTTGATGTCTAACTCATCAATAGTTTTGAGGTACATTGCTCATTTGCAATGTTTTAAACTGCGACCATGTCACAATCCTTAATATTGCAGTCAAATATGGTTAATGCAGCTGCAGTTGCAGTGTCGGAGACTTGAAAAAACGTCTATGCAACAATCGTGGTCACTGTCCTTTTTTTAATATATATTGCTTGTTTGCGTGTGATTACTTGTATTTGCATATTGTGAACAAAAAGTACAAGATGATTTTAACAATTTAAACTGTTTGGTTTCCATGTATCGTATTCTGACTCATTGAAGCTGCAGTTGCAATAGCAAATTCAACAAAAGCTATCATTCCAACTTCACGAAAAGCCTTAACAGGTTCTGCCAATGATGCATATGCACCTACCACCTTCCCTGCAAGACTTGTGGCAAAGGAAGAGGAGCAGGTTAAGAAGATGCATTTACTTTGGTTGAAATTAAACAAGATCAATCGTGTTTATGGTGATTGGATTGATGATTCACCTCTTGTTCTTCCCAACTTGCCAAGTGCAGTGGAGAACTGA
Protein sequence

>MS.gene036822.t1

MVLPDNIPTCKMSPPQFTTSNSDIIEVRPRFPMKNENLEQHSTLYQPHSFKRARISDNNRSNALICPPPKMVLPPSNRADHVFYKTRVCNKSRLGTCRNGKDCNFAHGVEELRLPPRNWQELVSPCSSDGQQQLRNWEEDQKMIHKMKLCRMYSNGEKCFFGSKCYFLHEDPAKFRDHSGKSRECSSISIGAIGSSKSFGAVDKPARGTYWKTKTCFHWQHQGRCPFGEDCQFAHGEAAAVAIANSTKAIIPTSRKALTGSANDAYAPTTFPARLVAKEEEQVKKMHLLWLKLNKINRVYGDWIDDSPLVLPNLPSAVEN