Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036871.t1 | XP_024637584.1 | 91.9 | 755 | 59 | 2 | 1 | 753 | 1 | 755 | 0.00E+00 | 1360.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036871.t1 | Q9FUY2 | 35.8 | 939 | 409 | 16 | 1 | 753 | 1 | 931 | 3.0e-134 | 480.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036871.t1 | G7JU56 | 88.5 | 781 | 62 | 4 | 1 | 753 | 1 | 781 | 0.0e+00 | 1336.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene036871.t1 | TR | LUG |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036871.t1 | MTR_4g113080 | 89.117 | 781 | 57 | 4 | 1 | 753 | 1 | 781 | 0.0 | 1404 |
MS.gene036871.t1 | MTR_1g050340 | 38.662 | 807 | 420 | 20 | 1 | 753 | 1 | 786 | 2.18e-148 | 453 |
MS.gene036871.t1 | MTR_1g050340 | 38.490 | 808 | 421 | 20 | 1 | 753 | 1 | 787 | 1.81e-147 | 451 |
MS.gene036871.t1 | MTR_1g011610 | 51.807 | 415 | 173 | 8 | 365 | 753 | 480 | 893 | 3.31e-124 | 393 |
MS.gene036871.t1 | MTR_1g011610 | 37.759 | 241 | 133 | 7 | 132 | 365 | 182 | 412 | 2.86e-29 | 125 |
MS.gene036871.t1 | MTR_1g011610 | 46.067 | 89 | 46 | 2 | 1 | 88 | 1 | 88 | 1.16e-16 | 85.1 |
MS.gene036871.t1 | MTR_1g011610 | 50.708 | 424 | 173 | 9 | 365 | 753 | 480 | 902 | 3.71e-121 | 385 |
MS.gene036871.t1 | MTR_1g011610 | 37.759 | 241 | 133 | 7 | 132 | 365 | 182 | 412 | 3.08e-29 | 125 |
MS.gene036871.t1 | MTR_1g011610 | 46.067 | 89 | 46 | 2 | 1 | 88 | 1 | 88 | 1.31e-16 | 84.7 |
MS.gene036871.t1 | MTR_7g058460 | 33.785 | 811 | 433 | 25 | 8 | 753 | 13 | 784 | 6.04e-120 | 379 |
MS.gene036871.t1 | MTR_3g107910 | 49.296 | 426 | 174 | 10 | 365 | 753 | 477 | 897 | 4.49e-119 | 379 |
MS.gene036871.t1 | MTR_3g107910 | 36.515 | 241 | 139 | 7 | 132 | 365 | 171 | 404 | 5.17e-29 | 124 |
MS.gene036871.t1 | MTR_3g107910 | 49.296 | 426 | 174 | 10 | 365 | 753 | 484 | 904 | 4.74e-119 | 380 |
MS.gene036871.t1 | MTR_3g107910 | 35.484 | 248 | 139 | 8 | 132 | 365 | 171 | 411 | 7.57e-27 | 117 |
MS.gene036871.t1 | MTR_7g058440 | 34.037 | 805 | 430 | 25 | 8 | 753 | 13 | 775 | 1.49e-118 | 375 |
MS.gene036871.t1 | MTR_2g014020 | 41.611 | 298 | 163 | 6 | 461 | 753 | 233 | 524 | 3.23e-67 | 231 |
MS.gene036871.t1 | MTR_4g088620 | 35.889 | 287 | 177 | 6 | 471 | 753 | 25 | 308 | 1.35e-46 | 168 |
MS.gene036871.t1 | MTR_4g088640 | 36.577 | 298 | 175 | 9 | 462 | 753 | 94 | 383 | 4.11e-45 | 166 |
MS.gene036871.t1 | MTR_4g088660 | 34.564 | 298 | 185 | 8 | 460 | 753 | 190 | 481 | 1.20e-41 | 159 |
MS.gene036871.t1 | MTR_4g088665 | 35.772 | 246 | 151 | 6 | 460 | 702 | 86 | 327 | 6.34e-41 | 154 |
MS.gene036871.t1 | MTR_4g088625 | 35.192 | 287 | 173 | 8 | 473 | 753 | 20 | 299 | 6.76e-41 | 152 |
MS.gene036871.t1 | MTR_2g014020 | 42.778 | 180 | 100 | 3 | 461 | 638 | 233 | 411 | 3.63e-38 | 147 |
MS.gene036871.t1 | MTR_4g088635 | 33.562 | 292 | 176 | 8 | 475 | 753 | 97 | 383 | 8.82e-38 | 145 |
MS.gene036871.t1 | MTR_4g088670 | 34.317 | 271 | 154 | 8 | 482 | 744 | 32 | 286 | 3.19e-32 | 127 |
MS.gene036871.t1 | MTR_5g022690 | 29.470 | 302 | 178 | 12 | 478 | 752 | 182 | 475 | 8.26e-22 | 100 |
MS.gene036871.t1 | MTR_4g088675 | 28.163 | 245 | 131 | 7 | 513 | 753 | 17 | 220 | 1.44e-20 | 91.7 |
MS.gene036871.t1 | MTR_6g004040 | 26.210 | 248 | 173 | 6 | 473 | 714 | 13 | 256 | 2.24e-17 | 87.0 |
MS.gene036871.t1 | MTR_3g106080 | 28.899 | 218 | 141 | 7 | 476 | 687 | 419 | 628 | 2.05e-16 | 84.0 |
MS.gene036871.t1 | MTR_3g045130 | 26.259 | 278 | 153 | 8 | 482 | 752 | 278 | 510 | 1.22e-15 | 80.9 |
MS.gene036871.t1 | MTR_1g072140 | 23.427 | 286 | 204 | 10 | 479 | 752 | 30 | 312 | 2.77e-14 | 75.1 |
MS.gene036871.t1 | MTR_2g012630 | 23.715 | 253 | 183 | 6 | 468 | 714 | 7 | 255 | 7.39e-13 | 72.8 |
MS.gene036871.t1 | MTR_2g012630 | 23.715 | 253 | 183 | 6 | 468 | 714 | 7 | 255 | 8.01e-13 | 72.8 |
MS.gene036871.t1 | MTR_4g119620 | 25.764 | 229 | 152 | 6 | 506 | 719 | 15 | 240 | 1.42e-12 | 70.1 |
MS.gene036871.t1 | MTR_4g119620 | 27.136 | 199 | 131 | 6 | 484 | 671 | 86 | 281 | 1.71e-12 | 69.7 |
MS.gene036871.t1 | MTR_4g119620 | 25.980 | 204 | 139 | 6 | 476 | 668 | 120 | 322 | 1.16e-11 | 67.0 |
MS.gene036871.t1 | MTR_8g106790 | 26.423 | 246 | 159 | 11 | 490 | 720 | 30 | 268 | 1.63e-11 | 66.6 |
MS.gene036871.t1 | MTR_2g060520 | 22.159 | 352 | 231 | 12 | 435 | 753 | 91 | 432 | 3.40e-11 | 66.6 |
MS.gene036871.t1 | MTR_1g044720 | 24.865 | 185 | 131 | 5 | 490 | 667 | 236 | 419 | 3.72e-11 | 66.6 |
MS.gene036871.t1 | MTR_2g436510 | 23.551 | 276 | 195 | 8 | 491 | 753 | 185 | 457 | 7.08e-11 | 65.9 |
MS.gene036871.t1 | MTR_4g071130 | 22.183 | 284 | 181 | 10 | 479 | 727 | 54 | 332 | 7.39e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036871.t1 | AT2G32700 | 36.946 | 812 | 426 | 26 | 1 | 753 | 1 | 785 | 1.94e-135 | 419 |
MS.gene036871.t1 | AT2G32700 | 36.855 | 814 | 426 | 27 | 1 | 753 | 1 | 787 | 7.88e-134 | 415 |
MS.gene036871.t1 | AT2G32700 | 36.855 | 814 | 426 | 27 | 1 | 753 | 1 | 787 | 7.88e-134 | 415 |
MS.gene036871.t1 | AT2G32700 | 36.855 | 814 | 426 | 27 | 1 | 753 | 1 | 787 | 7.88e-134 | 415 |
MS.gene036871.t1 | AT2G32700 | 36.855 | 814 | 426 | 27 | 1 | 753 | 1 | 787 | 7.88e-134 | 415 |
MS.gene036871.t1 | AT2G32700 | 36.855 | 814 | 426 | 27 | 1 | 753 | 1 | 787 | 7.88e-134 | 415 |
MS.gene036871.t1 | AT2G32700 | 36.938 | 823 | 432 | 29 | 1 | 753 | 1 | 806 | 6.46e-132 | 410 |
MS.gene036871.t1 | AT4G32551 | 49.517 | 414 | 180 | 7 | 368 | 753 | 519 | 931 | 2.55e-122 | 389 |
MS.gene036871.t1 | AT4G32551 | 36.508 | 252 | 146 | 8 | 116 | 361 | 195 | 438 | 2.02e-29 | 125 |
MS.gene036871.t1 | AT4G32551 | 47.191 | 89 | 45 | 2 | 1 | 88 | 1 | 88 | 2.40e-17 | 87.4 |
MS.gene036871.t1 | AT4G32551 | 49.517 | 414 | 180 | 7 | 368 | 753 | 557 | 969 | 8.97e-122 | 389 |
MS.gene036871.t1 | AT4G32551 | 32.069 | 290 | 145 | 9 | 116 | 361 | 195 | 476 | 2.90e-24 | 109 |
MS.gene036871.t1 | AT4G32551 | 47.191 | 89 | 45 | 2 | 1 | 88 | 1 | 88 | 2.34e-17 | 87.4 |
MS.gene036871.t1 | AT2G41500 | 29.787 | 282 | 180 | 9 | 482 | 752 | 261 | 535 | 2.84e-22 | 102 |
MS.gene036871.t1 | AT2G41500 | 29.787 | 282 | 180 | 9 | 482 | 752 | 261 | 535 | 2.84e-22 | 102 |
MS.gene036871.t1 | AT1G61210 | 25.483 | 259 | 180 | 7 | 462 | 714 | 4 | 255 | 1.46e-17 | 88.2 |
MS.gene036871.t1 | AT1G61210 | 23.744 | 219 | 149 | 7 | 481 | 684 | 105 | 320 | 5.05e-11 | 67.0 |
MS.gene036871.t1 | AT1G61210 | 25.483 | 259 | 180 | 7 | 462 | 714 | 4 | 255 | 1.60e-17 | 88.2 |
MS.gene036871.t1 | AT1G61210 | 23.744 | 219 | 149 | 7 | 481 | 684 | 105 | 320 | 6.60e-11 | 66.6 |
MS.gene036871.t1 | AT1G61210 | 25.483 | 259 | 180 | 7 | 462 | 714 | 4 | 255 | 1.85e-17 | 87.8 |
MS.gene036871.t1 | AT1G61210 | 23.744 | 219 | 149 | 7 | 481 | 684 | 105 | 320 | 7.36e-11 | 66.6 |
MS.gene036871.t1 | AT5G25150 | 29.091 | 220 | 144 | 5 | 473 | 687 | 415 | 627 | 4.43e-17 | 86.3 |
MS.gene036871.t1 | AT5G25150 | 29.091 | 220 | 144 | 5 | 473 | 687 | 415 | 627 | 4.84e-17 | 85.9 |
MS.gene036871.t1 | AT5G23430 | 27.092 | 251 | 167 | 7 | 473 | 714 | 13 | 256 | 8.12e-17 | 85.5 |
MS.gene036871.t1 | AT5G23430 | 27.092 | 251 | 167 | 7 | 473 | 714 | 13 | 256 | 8.12e-17 | 85.5 |
MS.gene036871.t1 | AT5G23430 | 27.092 | 251 | 167 | 7 | 473 | 714 | 13 | 256 | 9.41e-17 | 85.5 |
MS.gene036871.t1 | AT5G08390 | 26.295 | 251 | 169 | 7 | 473 | 714 | 13 | 256 | 4.43e-16 | 83.2 |
MS.gene036871.t1 | AT3G49660 | 24.658 | 292 | 196 | 12 | 479 | 752 | 27 | 312 | 1.44e-15 | 79.0 |
MS.gene036871.t1 | AT3G49660 | 24.514 | 257 | 174 | 10 | 513 | 753 | 19 | 271 | 2.96e-13 | 72.0 |
MS.gene036871.t1 | AT4G02730 | 23.875 | 289 | 202 | 9 | 479 | 753 | 46 | 330 | 2.97e-15 | 78.2 |
MS.gene036871.t1 | AT1G11160 | 23.552 | 259 | 185 | 7 | 462 | 714 | 4 | 255 | 9.73e-15 | 79.0 |
MS.gene036871.t1 | AT1G11160 | 25.000 | 192 | 138 | 4 | 481 | 668 | 105 | 294 | 4.00e-11 | 67.4 |
MS.gene036871.t1 | AT1G11160 | 23.552 | 259 | 185 | 7 | 462 | 714 | 4 | 255 | 1.16e-14 | 78.6 |
MS.gene036871.t1 | AT1G11160 | 27.215 | 158 | 109 | 4 | 481 | 634 | 105 | 260 | 4.43e-11 | 67.0 |
MS.gene036871.t1 | AT1G11160 | 23.552 | 259 | 185 | 7 | 462 | 714 | 4 | 255 | 1.28e-14 | 78.6 |
MS.gene036871.t1 | AT1G11160 | 25.000 | 192 | 138 | 4 | 481 | 668 | 105 | 294 | 4.29e-11 | 67.0 |
MS.gene036871.t1 | AT5G60940 | 23.934 | 305 | 198 | 11 | 479 | 753 | 126 | 426 | 1.32e-13 | 74.3 |
MS.gene036871.t1 | AT5G13480 | 23.297 | 279 | 199 | 9 | 484 | 752 | 119 | 392 | 3.23e-13 | 73.6 |
MS.gene036871.t1 | AT5G13480 | 23.297 | 279 | 199 | 9 | 484 | 752 | 131 | 404 | 3.28e-13 | 73.6 |
MS.gene036871.t1 | AT5G13480 | 23.297 | 279 | 199 | 9 | 484 | 752 | 119 | 392 | 3.70e-13 | 73.6 |
MS.gene036871.t1 | AT5G60940 | 23.934 | 305 | 198 | 11 | 479 | 753 | 34 | 334 | 3.76e-13 | 72.0 |
MS.gene036871.t1 | AT5G13480 | 23.297 | 279 | 199 | 9 | 484 | 752 | 142 | 415 | 4.46e-13 | 73.2 |
MS.gene036871.t1 | AT2G33340 | 25.668 | 187 | 129 | 4 | 490 | 667 | 236 | 421 | 1.35e-12 | 71.2 |
MS.gene036871.t1 | AT2G33340 | 25.668 | 187 | 129 | 4 | 490 | 667 | 236 | 421 | 1.35e-12 | 71.2 |
MS.gene036871.t1 | AT2G33340 | 25.668 | 187 | 129 | 4 | 490 | 667 | 236 | 421 | 1.46e-12 | 71.2 |
MS.gene036871.t1 | AT5G08560 | 23.904 | 251 | 175 | 8 | 514 | 752 | 270 | 516 | 1.19e-11 | 68.6 |
MS.gene036871.t1 | AT5G08560 | 23.904 | 251 | 175 | 8 | 514 | 752 | 270 | 516 | 1.19e-11 | 68.6 |
MS.gene036871.t1 | AT5G08560 | 23.904 | 251 | 175 | 8 | 514 | 752 | 270 | 516 | 1.19e-11 | 68.6 |
MS.gene036871.t1 | AT1G11160 | 27.215 | 158 | 109 | 4 | 481 | 634 | 63 | 218 | 4.48e-11 | 67.0 |
MS.gene036871.t1 | AT5G67320 | 27.778 | 162 | 104 | 4 | 478 | 627 | 450 | 610 | 7.74e-11 | 65.9 |
MS.gene036871.t1 | AT2G43770 | 20.280 | 286 | 204 | 11 | 484 | 751 | 61 | 340 | 8.82e-11 | 64.7 |
Find 182 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTCTCTTCGGACATTTAC+AGG | 0.170744 | 8.1:+13215706 | MS.gene036871:CDS |
GCTCTTCAAGCGTAGATTTC+AGG | 0.213054 | 8.1:-13214841 | None:intergenic |
CACCATAGGAGCATTGTTTA+TGG | 0.233609 | 8.1:-13210839 | None:intergenic |
CTTCCGGTCAACTTGACTTT+TGG | 0.234717 | 8.1:-13213770 | None:intergenic |
CCTGCTCAGCTGCAGCAATA+TGG | 0.235792 | 8.1:+13210775 | MS.gene036871:CDS |
TATTTGTTCTTGTGATAATA+AGG | 0.238048 | 8.1:+13215777 | MS.gene036871:CDS |
AGTACCATGAACACTGTAAA+TGG | 0.257174 | 8.1:-13211511 | None:intergenic |
AAGTCCAGATGAGGCAATTC+AGG | 0.270725 | 8.1:-13213590 | None:intergenic |
TCAGTGTGCTGGCACTCTTC+TGG | 0.277434 | 8.1:+13216371 | MS.gene036871:CDS |
GCGATTTCATACGCTTTATC+AGG | 0.280157 | 8.1:-13209119 | None:intergenic |
GAACAAATGTAATACCTTAA+AGG | 0.280380 | 8.1:-13210956 | None:intergenic |
GCTTGTCCATAATCAAAATA+TGG | 0.283609 | 8.1:+13213490 | MS.gene036871:CDS |
TTGTGCAGGTGTTACAATAT+TGG | 0.283850 | 8.1:-13213558 | None:intergenic |
TGTGCAGGTGTTACAATATT+GGG | 0.283894 | 8.1:-13213557 | None:intergenic |
CTGCTCAGCTGCAGCAATAT+GGG | 0.293474 | 8.1:+13210776 | MS.gene036871:CDS |
CCATATTGCTGCAGCTGAGC+AGG | 0.294656 | 8.1:-13210775 | None:intergenic |
GAAGGCTGTCCACCAGTTCT+TGG | 0.309028 | 8.1:-13211132 | None:intergenic |
GATGGAAAACTATTTGTTAC+TGG | 0.314915 | 8.1:+13214646 | MS.gene036871:CDS |
TACTGGTGGTCGTGATAAAA+AGG | 0.316571 | 8.1:+13214663 | MS.gene036871:CDS |
TTGCAAATGGTAGTTGTATT+GGG | 0.320162 | 8.1:+13215818 | MS.gene036871:CDS |
TTTCCCTGAATTGCCTCATC+TGG | 0.320474 | 8.1:+13213586 | MS.gene036871:CDS |
CAGGTTGAAGACTCCCCTTC+AGG | 0.322856 | 8.1:+13210912 | MS.gene036871:CDS |
TGTTATTTGGCAGGCTCATA+TGG | 0.330746 | 8.1:+13214312 | MS.gene036871:intron |
AGAACTGGTGGACAGCCTTC+AGG | 0.335242 | 8.1:+13211135 | MS.gene036871:CDS |
ATTGCAAATGGTAGTTGTAT+TGG | 0.340157 | 8.1:+13215817 | MS.gene036871:CDS |
CTCCTATGGTGAGGCAGAAC+CGG | 0.346361 | 8.1:+13210851 | MS.gene036871:CDS |
ATTGTAACACCTGCACAAAT+TGG | 0.348653 | 8.1:+13213563 | MS.gene036871:CDS |
TAATTCAGTCGCTTATGCTC+TGG | 0.350259 | 8.1:+13216646 | MS.gene036871:intron |
GTGAGATTTCAACCTGGTTT+GGG | 0.350453 | 8.1:+13215957 | MS.gene036871:CDS |
CAAATAAGGCCACGTTTACT+TGG | 0.352863 | 8.1:-13215760 | None:intergenic |
TCTCAAGAGCAACGGATCTT+TGG | 0.353331 | 8.1:+13214339 | MS.gene036871:CDS |
TATTATCACAAGAACAAATA+AGG | 0.354896 | 8.1:-13215774 | None:intergenic |
ATGGCAGCAACTTATGTTTC+AGG | 0.355840 | 8.1:+13213409 | MS.gene036871:CDS |
GCACTCTTCTGGAAATTATC+TGG | 0.356961 | 8.1:+13216382 | MS.gene036871:CDS |
CCGATAAAACTGTAAAGGTT+TGG | 0.363852 | 8.1:+13214927 | MS.gene036871:CDS |
GGTGAGATTTCAACCTGGTT+TGG | 0.364221 | 8.1:+13215956 | MS.gene036871:CDS |
TTTATCAGGTTCATCGCATT+TGG | 0.370622 | 8.1:-13209105 | None:intergenic |
GGCAATGTTGAACAGAATAT+TGG | 0.370914 | 8.1:+13209842 | MS.gene036871:CDS |
CTTGGTCAACTCGTCCATTA+TGG | 0.371045 | 8.1:-13214402 | None:intergenic |
ACCAGCATTGTCTTACCTTA+AGG | 0.374324 | 8.1:+13210062 | MS.gene036871:CDS |
ATAATAAGGAAATAAGATAT+TGG | 0.375637 | 8.1:+13215791 | MS.gene036871:CDS |
AATCAAAACCAGCAACTTCC+AGG | 0.378139 | 8.1:+13211328 | MS.gene036871:CDS |
CTTGTAACCCTGGAAGTTGC+TGG | 0.378969 | 8.1:-13211336 | None:intergenic |
AACACAATGGGATCATCTTC+TGG | 0.380898 | 8.1:+13213847 | MS.gene036871:CDS |
ACCATAGGAGCATTGTTTAT+GGG | 0.382702 | 8.1:-13210838 | None:intergenic |
CATATTGCTGCAGCTGAGCA+GGG | 0.392189 | 8.1:-13210774 | None:intergenic |
CGATAAAACTGTAAAGGTTT+GGG | 0.397292 | 8.1:+13214928 | MS.gene036871:CDS |
TGCAGCCTGGTCATTCTCTT+CGG | 0.397318 | 8.1:+13215695 | MS.gene036871:intron |
GTTTGCAGTTCCAGAGCTAT+TGG | 0.397684 | 8.1:-13213827 | None:intergenic |
AAGGTTGGTTGATACCTTAT+GGG | 0.400769 | 8.1:-13213621 | None:intergenic |
GGATCCATTTACAGTGTTCA+TGG | 0.401695 | 8.1:+13211507 | MS.gene036871:CDS |
ACTTGGCAACAGAATGGTTT+CGG | 0.403735 | 8.1:+13213907 | MS.gene036871:CDS |
CCATCAAAACCACTGACAAA+TGG | 0.409375 | 8.1:-13213452 | None:intergenic |
CAGGGCTCTGCAATATGAAC+TGG | 0.414323 | 8.1:-13210756 | None:intergenic |
GGCATCTGTTTGTAATGATC+TGG | 0.417806 | 8.1:+13216403 | MS.gene036871:CDS |
GAGTTGCAGATTTAAATTGC+AGG | 0.422031 | 8.1:+13216037 | MS.gene036871:CDS |
CTGCCATGGTGAAAATTGAT+TGG | 0.424275 | 8.1:-13213393 | None:intergenic |
CTTGCTGATTCAGACCATAA+TGG | 0.437173 | 8.1:+13214388 | MS.gene036871:CDS |
ATGATAGGACTTTCAAGATC+TGG | 0.438220 | 8.1:+13216769 | MS.gene036871:CDS |
AATTCAGTCGCTTATGCTCT+GGG | 0.438597 | 8.1:+13216647 | MS.gene036871:intron |
TTTACAAGAGAAACTTCAAC+AGG | 0.441555 | 8.1:+13211300 | MS.gene036871:CDS |
ATGAGATTCAGGCTTCTCTA+TGG | 0.444675 | 8.1:+13214801 | MS.gene036871:intron |
CTCTGGGCCATTGGATCTGA+TGG | 0.445049 | 8.1:+13216431 | MS.gene036871:CDS |
AGCCAAAGTCTTACTGCTAA+AGG | 0.448358 | 8.1:-13212480 | None:intergenic |
CCATTGGATCTGATGGCAGC+GGG | 0.448766 | 8.1:+13216438 | MS.gene036871:CDS |
GAACTGGTGGACAGCCTTCA+GGG | 0.451874 | 8.1:+13211136 | MS.gene036871:CDS |
GCTTATGCTCTGGGACTTTG+AGG | 0.454130 | 8.1:+13216656 | MS.gene036871:CDS |
TGCTCAGCTGCAGCAATATG+GGG | 0.454725 | 8.1:+13210777 | MS.gene036871:CDS |
TTGGCAGTATCAGATGTTAC+TGG | 0.456091 | 8.1:+13216726 | MS.gene036871:CDS |
TGGCTTCAGTTAGTCATGAT+AGG | 0.456464 | 8.1:+13216754 | MS.gene036871:CDS |
TAATGATCTGGTTAAACTCT+GGG | 0.456770 | 8.1:+13216415 | MS.gene036871:CDS |
TCCCATAAACAATGCTCCTA+TGG | 0.458377 | 8.1:+13210837 | MS.gene036871:CDS |
GCCTTGTTCGTTCAGTGTGC+TGG | 0.458741 | 8.1:+13216360 | MS.gene036871:CDS |
AACAAGGCACAATCCTCGTT+TGG | 0.460063 | 8.1:-13211093 | None:intergenic |
CTGGTTAAACTCTGGGCCAT+TGG | 0.460194 | 8.1:+13216422 | MS.gene036871:CDS |
GTAATGATCTGGTTAAACTC+TGG | 0.461731 | 8.1:+13216414 | MS.gene036871:CDS |
TGCACTCATGCCACTGTGCA+TGG | 0.464962 | 8.1:-13211454 | None:intergenic |
TGATTATGGACAAGCAAACT+TGG | 0.465215 | 8.1:-13213482 | None:intergenic |
AACCACCTACAGAATTTGAT+TGG | 0.466272 | 8.1:-13213529 | None:intergenic |
ATAATCAAAATATGGTTCCT+TGG | 0.467781 | 8.1:+13213498 | MS.gene036871:CDS |
TCAGGTCTTGCCAATAGCTC+TGG | 0.469604 | 8.1:+13213817 | MS.gene036871:CDS |
CGAAAAGTAGGATCAAGTTC+AGG | 0.470472 | 8.1:+13213799 | MS.gene036871:CDS |
TCAAAATATTGTAGCTAGGA+TGG | 0.471613 | 8.1:-13216514 | None:intergenic |
TGCAGACACGACTGCCAACT+TGG | 0.472292 | 8.1:+13213890 | MS.gene036871:CDS |
GGCAGTCGTGTCTGCATAGT+TGG | 0.473371 | 8.1:-13213883 | None:intergenic |
TTCTGTTTGCAGACAAACAT+TGG | 0.483931 | 8.1:+13211261 | MS.gene036871:intron |
TTGTAAAATGCCAAGTGCAC+TGG | 0.484005 | 8.1:-13211284 | None:intergenic |
GCAAGAATATTTCATGATGA+AGG | 0.484394 | 8.1:+13209821 | MS.gene036871:CDS |
ACTTATGTTTCAGGCACAGC+AGG | 0.484632 | 8.1:+13213418 | MS.gene036871:CDS |
ATCAGATGTTACTGGATTGG+TGG | 0.488563 | 8.1:+13216734 | MS.gene036871:CDS |
AAACCATTCTGTTGCCAAGT+TGG | 0.494388 | 8.1:-13213904 | None:intergenic |
AACGAAATAGCACCAAGAAC+TGG | 0.496303 | 8.1:+13211120 | MS.gene036871:CDS |
GCCATTGGATCTGATGGCAG+CGG | 0.497982 | 8.1:+13216437 | MS.gene036871:CDS |
TCCTATGGTGAGGCAGAACC+GGG | 0.500407 | 8.1:+13210852 | MS.gene036871:CDS |
AGATATTGGAATATTGCAAA+TGG | 0.505994 | 8.1:+13215805 | MS.gene036871:CDS |
TGCATCAACACAGAATCAAT+TGG | 0.506774 | 8.1:+13213936 | MS.gene036871:CDS |
TCTGGAACTGCAAACACAAT+GGG | 0.508959 | 8.1:+13213835 | MS.gene036871:CDS |
TAATGAGATCAAGCATGGAT+TGG | 0.510535 | 8.1:+13214585 | MS.gene036871:CDS |
GATACAAGCTTGTCGTGTGC+AGG | 0.517006 | 8.1:-13216699 | None:intergenic |
TGTTGTCACTTCTCCTCGGA+TGG | 0.520645 | 8.1:+13214628 | MS.gene036871:CDS |
CTGCCAACTTGGCAACAGAA+TGG | 0.522284 | 8.1:+13213901 | MS.gene036871:CDS |
CCCGCTGCCATCAGATCCAA+TGG | 0.526518 | 8.1:-13216438 | None:intergenic |
TCATTTAATGAGATCAAGCA+TGG | 0.527559 | 8.1:+13214580 | MS.gene036871:CDS |
ATTTCAACCTGGTTTGGGAA+AGG | 0.527606 | 8.1:+13215962 | MS.gene036871:CDS |
CAAACATTGGCCAGTGCACT+TGG | 0.528318 | 8.1:+13211274 | MS.gene036871:CDS |
TAGCAACATAGAACATGCTT+GGG | 0.529135 | 8.1:-13214895 | None:intergenic |
TCAGGGAAACCAATTTGTGC+AGG | 0.529698 | 8.1:-13213572 | None:intergenic |
CAAGAGCAACGGATCTTTGG+CGG | 0.529755 | 8.1:+13214342 | MS.gene036871:CDS |
GCAAGAACCTTTCCCAAACC+AGG | 0.531493 | 8.1:-13215969 | None:intergenic |
CATACAATTGATTCTTCATG+AGG | 0.532585 | 8.1:-13209793 | None:intergenic |
GTTGTTCTCTCTTCGAGTGG+TGG | 0.533117 | 8.1:+13209989 | MS.gene036871:CDS |
AGTCCAGATGAGGCAATTCA+GGG | 0.534232 | 8.1:-13213589 | None:intergenic |
ATGATCAAAATATTGTAGCT+AGG | 0.535188 | 8.1:-13216518 | None:intergenic |
CTCAGCCGATAAAACTGTAA+AGG | 0.537151 | 8.1:+13214922 | MS.gene036871:CDS |
CATCAAAAGCATTTCCCTGA+AGG | 0.539630 | 8.1:-13210927 | None:intergenic |
GTAGCAACATAGAACATGCT+TGG | 0.539825 | 8.1:-13214896 | None:intergenic |
TGCTATTTCGTTCAACAACA+AGG | 0.543891 | 8.1:-13211109 | None:intergenic |
CTCGTTTGGAAGCTGACCGC+GGG | 0.545244 | 8.1:-13211079 | None:intergenic |
CCGGGTTACTTCTAATACAA+TGG | 0.545781 | 8.1:+13210870 | MS.gene036871:CDS |
AATGGCAACAAAACTAAATG+AGG | 0.546151 | 8.1:+13210888 | MS.gene036871:CDS |
GGACTTAGATATGACCCATA+AGG | 0.547552 | 8.1:+13213607 | MS.gene036871:CDS |
CCATTGTATTAGAAGTAACC+CGG | 0.548960 | 8.1:-13210870 | None:intergenic |
CGACAAGCTTGTATCTGCAT+TGG | 0.551855 | 8.1:+13216707 | MS.gene036871:CDS |
TCTCAAGCTGTTGTTTCAGA+AGG | 0.560493 | 8.1:+13211486 | MS.gene036871:CDS |
TTTGATTGGCCATCGTTCCA+AGG | 0.560547 | 8.1:-13213515 | None:intergenic |
GTCTGCATAGTTGGTGTAGA+GGG | 0.561086 | 8.1:-13213874 | None:intergenic |
CTTCCAAAAGTCAAGTTGAC+CGG | 0.561136 | 8.1:+13213767 | MS.gene036871:CDS |
TGACTGTTGTCACTTCTCCT+CGG | 0.561258 | 8.1:+13214624 | MS.gene036871:CDS |
AGGTTGAAGACTCCCCTTCA+GGG | 0.566579 | 8.1:+13210913 | MS.gene036871:CDS |
GGTAGCGACTTGACTCTGAA+AGG | 0.568593 | 8.1:+13212453 | MS.gene036871:CDS |
GTAGCGACTTGACTCTGAAA+GGG | 0.570038 | 8.1:+13212454 | MS.gene036871:CDS |
ATCAAAAGCATTTCCCTGAA+GGG | 0.572579 | 8.1:-13210926 | None:intergenic |
CTCTGGAACTGCAAACACAA+TGG | 0.574440 | 8.1:+13213834 | MS.gene036871:CDS |
TTATCAGGGTGGTGTAACTC+AGG | 0.575396 | 8.1:+13215935 | MS.gene036871:intron |
CTGGTTGTTCTCTCTTCGAG+TGG | 0.576679 | 8.1:+13209986 | MS.gene036871:CDS |
CAACAAAACTAAATGAGGAC+AGG | 0.577019 | 8.1:+13210893 | MS.gene036871:CDS |
CGCTTGAAGAGCACACTCAA+CGG | 0.586936 | 8.1:+13214852 | MS.gene036871:CDS |
TTTACGATTACTTGTAACCC+TGG | 0.588248 | 8.1:-13211346 | None:intergenic |
GAATTGTTTATGGCCAAACA+AGG | 0.589606 | 8.1:+13210024 | MS.gene036871:CDS |
CTGAACGAACAAGGCTCATG+TGG | 0.591408 | 8.1:-13216352 | None:intergenic |
TTAGTTAATCCATTTGTCAG+TGG | 0.592463 | 8.1:+13213443 | MS.gene036871:CDS |
AAGATCCGTTGCTCTTGAGA+TGG | 0.593548 | 8.1:-13214336 | None:intergenic |
AGTATCAGATGTTACTGGAT+TGG | 0.595920 | 8.1:+13216731 | MS.gene036871:CDS |
ACCTTAAGGTAAGACAATGC+TGG | 0.597102 | 8.1:-13210063 | None:intergenic |
AATATGGTTCCTTGGAACGA+TGG | 0.597683 | 8.1:+13213506 | MS.gene036871:CDS |
ATTCTCTTCGGACATTTACA+GGG | 0.599684 | 8.1:+13215707 | MS.gene036871:CDS |
ACCCGGTTCTGCCTCACCAT+AGG | 0.601611 | 8.1:-13210853 | None:intergenic |
GCCAGCACACTGAACGAACA+AGG | 0.603185 | 8.1:-13216361 | None:intergenic |
AGGTGTTACAATATTGGGAA+TGG | 0.603227 | 8.1:-13213552 | None:intergenic |
ATCGCATTTGGATTGAGACA+TGG | 0.604361 | 8.1:-13209093 | None:intergenic |
TCAAAAGCATTTCCCTGAAG+GGG | 0.605318 | 8.1:-13210925 | None:intergenic |
GGAAAACTATTTGTTACTGG+TGG | 0.605813 | 8.1:+13214649 | MS.gene036871:CDS |
ATCAAAACCAGCAACTTCCA+GGG | 0.612502 | 8.1:+13211329 | MS.gene036871:CDS |
TGAAACATAAGTTGCTGCCA+TGG | 0.615754 | 8.1:-13213407 | None:intergenic |
GTTTATGGGACAGAGAACAT+TGG | 0.619165 | 8.1:-13210824 | None:intergenic |
GGCCAATCAAATTCTGTAGG+TGG | 0.625840 | 8.1:+13213527 | MS.gene036871:CDS |
CCGCGGTCAGCTTCCAAACG+AGG | 0.626261 | 8.1:+13211080 | MS.gene036871:CDS |
TGTCTGCATAGTTGGTGTAG+AGG | 0.626946 | 8.1:-13213875 | None:intergenic |
GATGGCCAATCAAATTCTGT+AGG | 0.638312 | 8.1:+13213524 | MS.gene036871:CDS |
CATTGGATCTGATGGCAGCG+GGG | 0.639120 | 8.1:+13216439 | MS.gene036871:CDS |
GAAATAGCACCAAGAACTGG+TGG | 0.641067 | 8.1:+13211123 | MS.gene036871:CDS |
ATGGACCATCTCAAGAGCAA+CGG | 0.642745 | 8.1:+13214331 | MS.gene036871:CDS |
AATTGATTGGAAGATTGTGA+AGG | 0.646797 | 8.1:-13213380 | None:intergenic |
GCGACTTGACTCTGAAAGGG+TGG | 0.648057 | 8.1:+13212457 | MS.gene036871:CDS |
ATGATTAGTAGGCACCCTGA+AGG | 0.649924 | 8.1:-13211150 | None:intergenic |
GTCATATCTAAGTCCAGATG+AGG | 0.650884 | 8.1:-13213599 | None:intergenic |
GGGATTGGATGAGCATCATG+CGG | 0.660736 | 8.1:+13213328 | MS.gene036871:intron |
TAAACAATGCTCCTATGGTG+AGG | 0.661726 | 8.1:+13210842 | MS.gene036871:CDS |
CCTCGTTTGGAAGCTGACCG+CGG | 0.663224 | 8.1:-13211080 | None:intergenic |
TTTGATCATTTGCTGCAGTG+AGG | 0.663983 | 8.1:+13216532 | MS.gene036871:CDS |
AAATTTAGGCTCAAGAAATG+CGG | 0.670041 | 8.1:+13210707 | MS.gene036871:intron |
TATGGGGCTGAAACTCAAGA+AGG | 0.670598 | 8.1:+13210793 | MS.gene036871:CDS |
ACTCAGGTGAGATTTCAACC+TGG | 0.671694 | 8.1:+13215951 | MS.gene036871:CDS |
AATGTCCGAAGAGAATGACC+AGG | 0.680463 | 8.1:-13215700 | None:intergenic |
CACTCGAAGAGAGAACAACC+AGG | 0.686015 | 8.1:-13209985 | None:intergenic |
GACTTTCATCCAAGTAAACG+TGG | 0.686140 | 8.1:+13215751 | MS.gene036871:CDS |
GGTGTAGTTATGGATGCACC+TGG | 0.690437 | 8.1:+13209967 | MS.gene036871:intron |
CATAATGGACGAGTTGACCA+AGG | 0.691350 | 8.1:+13214403 | MS.gene036871:CDS |
GTGGCATGAGTGCAATGATG+AGG | 0.712221 | 8.1:+13211463 | MS.gene036871:CDS |
CTGAATCAGGCCATGCACAG+TGG | 0.713979 | 8.1:+13211444 | MS.gene036871:intron |
ATAATGAATGCTTATACCCG+CGG | 0.714622 | 8.1:+13211063 | MS.gene036871:CDS |
GTAGCTAGGATGGAAAACGC+AGG | 0.717458 | 8.1:-13216504 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 13209095 | 13216797 | 13209095 | ID=MS.gene036871 |
chr8.1 | mRNA | 13209095 | 13216797 | 13209095 | ID=MS.gene036871.t1;Parent=MS.gene036871 |
chr8.1 | exon | 13209095 | 13209129 | 13209095 | ID=MS.gene036871.t1.exon1;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13209095 | 13209129 | 13209095 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13209769 | 13209863 | 13209769 | ID=MS.gene036871.t1.exon2;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13209769 | 13209863 | 13209769 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13209974 | 13210083 | 13209974 | ID=MS.gene036871.t1.exon3;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13209974 | 13210083 | 13209974 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13210715 | 13210963 | 13210715 | ID=MS.gene036871.t1.exon4;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13210715 | 13210963 | 13210715 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13211063 | 13211157 | 13211063 | ID=MS.gene036871.t1.exon5;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13211063 | 13211157 | 13211063 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13211273 | 13211357 | 13211273 | ID=MS.gene036871.t1.exon6;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13211273 | 13211357 | 13211273 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13211453 | 13211528 | 13211453 | ID=MS.gene036871.t1.exon7;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13211453 | 13211528 | 13211453 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13212439 | 13212488 | 13212439 | ID=MS.gene036871.t1.exon8;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13212439 | 13212488 | 13212439 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13213329 | 13213628 | 13213329 | ID=MS.gene036871.t1.exon9;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13213329 | 13213628 | 13213329 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13213766 | 13213957 | 13213766 | ID=MS.gene036871.t1.exon10;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13213766 | 13213957 | 13213766 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13214325 | 13214424 | 13214325 | ID=MS.gene036871.t1.exon11;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13214325 | 13214424 | 13214325 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13214575 | 13214684 | 13214575 | ID=MS.gene036871.t1.exon12;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13214575 | 13214684 | 13214575 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13214812 | 13214961 | 13214812 | ID=MS.gene036871.t1.exon13;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13214812 | 13214961 | 13214812 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13215700 | 13215849 | 13215700 | ID=MS.gene036871.t1.exon14;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13215700 | 13215849 | 13215700 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13215942 | 13216058 | 13215942 | ID=MS.gene036871.t1.exon15;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13215942 | 13216058 | 13215942 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13216350 | 13216553 | 13216350 | ID=MS.gene036871.t1.exon16;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13216350 | 13216553 | 13216350 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
chr8.1 | exon | 13216654 | 13216797 | 13216654 | ID=MS.gene036871.t1.exon17;Parent=MS.gene036871.t1 |
chr8.1 | CDS | 13216654 | 13216797 | 13216654 | ID=cds.MS.gene036871.t1;Parent=MS.gene036871.t1 |
Gene Sequence |
Protein sequence |