AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036944

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036944.t1 MTR_7g073530 97.810 411 9 0 1 411 81 491 0.0 830
MS.gene036944.t1 MTR_8g005720 78.554 415 71 3 1 411 86 486 0.0 611
MS.gene036944.t1 MTR_5g053450 40.102 394 195 9 6 392 106 465 6.01e-91 286
MS.gene036944.t1 MTR_7g073560 97.458 118 3 0 294 411 21 138 1.96e-77 236
MS.gene036944.t1 MTR_7g073610 97.458 118 3 0 294 411 21 138 1.96e-77 236
MS.gene036944.t1 MTR_7g073540 57.416 209 47 5 204 411 1 168 5.54e-62 197
MS.gene036944.t1 MTR_7g073580 87.234 47 6 0 204 250 1 47 5.13e-22 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036944.t1 AT5G01920 74.155 414 100 2 2 409 82 494 0.0 606
MS.gene036944.t1 AT5G01920 74.155 414 100 2 2 409 82 494 0.0 606
MS.gene036944.t1 AT1G68830 39.599 399 200 9 16 406 101 466 1.92e-85 271

Find 83 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATTAAACTCATTGATTT+TGG 0.192635 7.3:-31351431 MS.gene036944:CDS
CATAATTCTTTCCTATTCTA+AGG 0.205369 7.3:+31351396 None:intergenic
AGGAACTTGGCACATGTTTC+AGG 0.208561 7.3:+31352237 None:intergenic
GCAAGACCAGGTGTTCTTAT+TGG 0.255792 7.3:-31352965 MS.gene036944:CDS
TCTTCTTTCAGAACTTCTTT+TGG 0.256149 7.3:+31350259 None:intergenic
ATTGAAGGGGCTAAAGAATT+TGG 0.281260 7.3:-31352303 MS.gene036944:CDS
TGCTATTGATGCATATCTTT+TGG 0.286774 7.3:-31352942 MS.gene036944:CDS
AATTCACAAAAGGTGGAAAA+TGG 0.296536 7.3:-31352182 MS.gene036944:CDS
GGATAAAGTCATTCTTAAAA+AGG 0.305148 7.3:-31352735 MS.gene036944:intron
TGCTTTGAAGAATTTCAATT+TGG 0.305364 7.3:-31350402 MS.gene036944:CDS
CAGAATCACTATCGAGGATT+TGG 0.305864 7.3:+31350315 None:intergenic
TGTTGTTTATTCTGCTGTTT+TGG 0.310233 7.3:-31352822 MS.gene036944:CDS
CAAATCCTCGATAGTGATTC+TGG 0.313026 7.3:-31350314 MS.gene036944:CDS
AAGGTGGAAAATGGCTTGTT+TGG 0.317886 7.3:-31352173 MS.gene036944:CDS
GGATCCAAAGGTGTATAATT+AGG 0.325357 7.3:+31351371 None:intergenic
CAAAGCAGCTTGAGACCTTA+AGG 0.325974 7.3:+31350418 None:intergenic
AATTTGGAAATGAGGACATA+TGG 0.340412 7.3:-31350386 MS.gene036944:CDS
AGCAAAGCTGCAATTGGTTC+TGG 0.351901 7.3:+31351293 None:intergenic
TCACCACCTAGAAGAAAATA+AGG 0.353507 7.3:+31350203 None:intergenic
TTTGTTGTGGATAGTTTATC+TGG 0.355447 7.3:-31352908 MS.gene036944:CDS
TCTTAAGAGATGTAATGATT+TGG 0.373158 7.3:+31351522 None:intergenic
TGTGCCTAATTATACACCTT+TGG 0.381947 7.3:-31351375 MS.gene036944:CDS
TTCTTGATTGGTGGTAAGAT+AGG 0.387351 7.3:-31352860 MS.gene036944:CDS
AAGAGGAGTGATTTCTTGAT+TGG 0.402107 7.3:-31352872 MS.gene036944:CDS
TAAGTTGGATGCTAAATCTA+AGG 0.404865 7.3:-31352756 MS.gene036944:CDS
CTTAAGAAAATTCACGATAC+TGG 0.413330 7.3:-31351506 MS.gene036944:CDS
GCTCTCACCAATCTTGTGGC+AGG 0.413652 7.3:-31351273 MS.gene036944:intron
TATCTGCTGCTTCTGCTTTG+AGG 0.415054 7.3:-31350229 MS.gene036944:CDS
AGAATTTCAATTTGGAAATG+AGG 0.423421 7.3:-31350394 MS.gene036944:CDS
TGTGGTAGAACATATAGTTC+AGG 0.425025 7.3:+31351335 None:intergenic
CAGGTGAAGGTTGGAATTGA+AGG 0.425995 7.3:-31352318 MS.gene036944:CDS
ATGATGCTTAAGAGTGGAAA+AGG 0.429785 7.3:-31352779 MS.gene036944:CDS
AATAAAACCTGCCACAAGAT+TGG 0.430494 7.3:+31351266 None:intergenic
GGTGAGAGCAAAGCTGCAAT+TGG 0.448894 7.3:+31351287 None:intergenic
GAAACATGTGCCAAGTTCCT+TGG 0.452194 7.3:-31352234 MS.gene036944:CDS
ACGATACTGGCATTGTTCAC+AGG 0.453178 7.3:-31351493 MS.gene036944:CDS
AGTTCAGGAGGACAGTAATC+AGG 0.454008 7.3:+31351350 None:intergenic
ATGGATATGATTTGAACAAA+TGG 0.455978 7.3:-31350367 MS.gene036944:CDS
AAGATAGGAGAAGGGTCATT+TGG 0.457236 7.3:-31352845 MS.gene036944:CDS
AAATGGCAATACCAACCTTA+AGG 0.473712 7.3:-31350433 MS.gene036944:CDS
CTCGATAGTGATTCTGGTAG+AGG 0.476912 7.3:-31350308 MS.gene036944:CDS
TACAAAACTTCCAAGGAACT+TGG 0.480257 7.3:+31352224 None:intergenic
TAAGAGTGGAAAAGGTAAGT+TGG 0.483976 7.3:-31352771 MS.gene036944:CDS
AGGAGTGATTTCTTGATTGG+TGG 0.486103 7.3:-31352869 MS.gene036944:CDS
ACCAATTCACAATTCACAAA+AGG 0.486126 7.3:-31352192 MS.gene036944:CDS
CTTTGCTCTCACCAATCTTG+TGG 0.487689 7.3:-31351277 MS.gene036944:CDS
TAGTGATTCTGGTAGAGGTT+GGG 0.495339 7.3:-31350303 MS.gene036944:CDS
TTTATCAGACATGCAGAGGT+TGG 0.500221 7.3:-31353029 None:intergenic
TGGAAAATGCAGGTGAAGGT+TGG 0.503897 7.3:-31352327 MS.gene036944:intron
ATGACAGATTCTAAGTTTGA+AGG 0.504582 7.3:+31351614 None:intergenic
ATTGGTGGTAAGATAGGAGA+AGG 0.514578 7.3:-31352854 MS.gene036944:CDS
CTGGAAGGAGAGATTTGAAG+AGG 0.517706 7.3:-31352889 MS.gene036944:CDS
TATCAGCTACAAAACTTCCA+AGG 0.517815 7.3:+31352217 None:intergenic
TGACAGATTCTAAGTTTGAA+GGG 0.525444 7.3:+31351615 None:intergenic
ATGGCTTGTTTGGAAATTTG+AGG 0.527072 7.3:-31352163 MS.gene036944:intron
GGATGTAAAGCCTTCCAACT+TGG 0.528793 7.3:-31351471 MS.gene036944:CDS
TTCGTAACAACCAAGTTGGA+AGG 0.529719 7.3:+31351461 None:intergenic
CGATACTGGCATTGTTCACA+GGG 0.533903 7.3:-31351492 MS.gene036944:CDS
GCAGCAACAGACCTTAGAAT+AGG 0.534028 7.3:-31351407 MS.gene036944:CDS
CTATCCACAACAAATTGCAT+TGG 0.535736 7.3:+31352917 None:intergenic
GGCTCCAATGCAATTTGTTG+TGG 0.536387 7.3:-31352921 MS.gene036944:CDS
TTGTGGATAGTTTATCTGGA+AGG 0.538024 7.3:-31352904 MS.gene036944:CDS
AATTCACAATTCACAAAAGG+TGG 0.543613 7.3:-31352189 MS.gene036944:CDS
TGGAATTGTACTCTTGCAAA+TGG 0.555729 7.3:-31350450 MS.gene036944:CDS
ATAGTGATTCTGGTAGAGGT+TGG 0.562052 7.3:-31350304 MS.gene036944:CDS
GCAGCTTGAGACCTTAAGGT+TGG 0.570427 7.3:+31350422 None:intergenic
GATATGATTTGAACAAATGG+AGG 0.576550 7.3:-31350364 MS.gene036944:CDS
AGGTGAAGGTTGGAATTGAA+GGG 0.576855 7.3:-31352317 MS.gene036944:CDS
GGAAGACTTTGTGTTTCTTG+TGG 0.591105 7.3:+31351317 None:intergenic
TCTTCTAGGTGGTGATCAGG+CGG 0.592233 7.3:-31350195 MS.gene036944:CDS
AGGATTTATCAGACATGCAG+AGG 0.603674 7.3:-31353033 None:intergenic
AATTTGGTGATTGTGAAGAG+TGG 0.607180 7.3:-31352287 MS.gene036944:CDS
ATGTTTCGAAATGCGTTGCA+AGG 0.615252 7.3:-31351593 MS.gene036944:CDS
AAAGCTGCAATTGGTTCTGG+AGG 0.616137 7.3:+31351296 None:intergenic
GGACAGTAATCAGGATCCAA+AGG 0.623204 7.3:+31351359 None:intergenic
AAAGAGATGATGCTTAAGAG+TGG 0.625247 7.3:-31352785 MS.gene036944:CDS
ATAGCACCAATAAGAACACC+TGG 0.641228 7.3:+31352959 None:intergenic
TTGGTGGTAAGATAGGAGAA+GGG 0.647730 7.3:-31352853 MS.gene036944:CDS
ATATGATTTGAACAAATGGA+GGG 0.648335 7.3:-31350363 MS.gene036944:CDS
GGTGAAGGTTGGAATTGAAG+GGG 0.652761 7.3:-31352316 MS.gene036944:CDS
GGTAGAACATATAGTTCAGG+AGG 0.667620 7.3:+31351338 None:intergenic
TCATGTAATCAGCAAGAGTG+CGG 0.675765 7.3:+31351651 None:intergenic
CTCTACCAGAATCACTATCG+AGG 0.676113 7.3:+31350309 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATTATGTAATAAAG+TGG - chr7.3:31352646-31352665 MS.gene036944:intron 10.0%
!! ATCATAATCATTTAATAATT+AGG - chr7.3:31352284-31352303 MS.gene036944:CDS 10.0%
!!! TAATTTAATGGTTTTATTGT+TGG - chr7.3:31350500-31350519 MS.gene036944:intron 15.0%
!!! TTTAACTTTTGTTATGAAAA+TGG + chr7.3:31352030-31352049 None:intergenic 15.0%
!! AATTATTTAGTAAGACTACT+AGG + chr7.3:31351046-31351065 None:intergenic 20.0%
!! ATGACTTAAATTAGATACAT+AGG - chr7.3:31350765-31350784 MS.gene036944:intron 20.0%
!! ATTTATATTTCAAACAGACA+AGG + chr7.3:31352634-31352653 None:intergenic 20.0%
!! GATGTTATAAAAGCTTAATT+AGG + chr7.3:31351976-31351995 None:intergenic 20.0%
!! TTCATTGCTTCTTAATTTAA+TGG - chr7.3:31350488-31350507 MS.gene036944:CDS 20.0%
!!! ACTAAATAATTTGTATCCAT+AGG - chr7.3:31351055-31351074 MS.gene036944:intron 20.0%
!!! TTCTACTTAAGATATTTCTA+AGG + chr7.3:31352210-31352229 None:intergenic 20.0%
!!! TTTTATTGTTGGAATAGTTA+TGG - chr7.3:31350511-31350530 MS.gene036944:intron 20.0%
! AGAATTTCAATTTGGAAATG+AGG - chr7.3:31352782-31352801 MS.gene036944:CDS 25.0%
! ATATGATTTGAACAAATGGA+GGG - chr7.3:31352813-31352832 MS.gene036944:CDS 25.0%
! ATGGATATGATTTGAACAAA+TGG - chr7.3:31352809-31352828 MS.gene036944:CDS 25.0%
! CAATTAGTATAAAGAACAGT+TGG + chr7.3:31351480-31351499 None:intergenic 25.0%
! CATAATTCTTTCCTATTCTA+AGG + chr7.3:31351783-31351802 None:intergenic 25.0%
! GAATACATATCAAAAAGATC+AGG + chr7.3:31352703-31352722 None:intergenic 25.0%
! GGATAAAGTCATTCTTAAAA+AGG - chr7.3:31350441-31350460 MS.gene036944:CDS 25.0%
! TCTTAAGAGATGTAATGATT+TGG + chr7.3:31351657-31351676 None:intergenic 25.0%
! TGATTCTTCTATCAATATCT+TGG + chr7.3:31352143-31352162 None:intergenic 25.0%
! TGTTCTTTATACTAATTGCA+GGG - chr7.3:31351482-31351501 MS.gene036944:CDS 25.0%
! TTCTGTTATCCTATTCATAT+AGG - chr7.3:31351932-31351951 MS.gene036944:intron 25.0%
!! AGAATGCATTAGTAGTATTT+TGG - chr7.3:31352176-31352195 MS.gene036944:CDS 25.0%
!! ATTAGTTCTTGAGTAAATGA+AGG + chr7.3:31351163-31351182 None:intergenic 25.0%
!! CATTTCAGTAACAAAGTATT+AGG + chr7.3:31350730-31350749 None:intergenic 25.0%
!! TATCAGCAAAAGAAGTATAT+AGG - chr7.3:31352117-31352136 MS.gene036944:intron 25.0%
!!! CAGATTAAACTCATTGATTT+TGG - chr7.3:31351745-31351764 MS.gene036944:intron 25.0%
!!! TGCTTTGAAGAATTTCAATT+TGG - chr7.3:31352774-31352793 MS.gene036944:CDS 25.0%
!!! TTGGAGATTTTACTTTTTGT+TGG - chr7.3:31350166-31350185 MS.gene036944:CDS 25.0%
AACTTGGTTGTTACGAAAAA+AGG - chr7.3:31351721-31351740 MS.gene036944:intron 30.0%
AATTCACAAAAGGTGGAAAA+TGG - chr7.3:31350994-31351013 MS.gene036944:intron 30.0%
AATTCACAATTCACAAAAGG+TGG - chr7.3:31350987-31351006 MS.gene036944:intron 30.0%
AATTTGGAAATGAGGACATA+TGG - chr7.3:31352790-31352809 MS.gene036944:CDS 30.0%
ACCAATTCACAATTCACAAA+AGG - chr7.3:31350984-31351003 MS.gene036944:intron 30.0%
ACTTGGTTGTTACGAAAAAA+GGG - chr7.3:31351722-31351741 MS.gene036944:intron 30.0%
ATGACAGATTCTAAGTTTGA+AGG + chr7.3:31351565-31351584 None:intergenic 30.0%
ATGTAAGATATACGCATCTT+AGG - chr7.3:31351444-31351463 MS.gene036944:CDS 30.0%
CTGTTCTTTATACTAATTGC+AGG - chr7.3:31351481-31351500 MS.gene036944:CDS 30.0%
CTTAAGAAAATTCACGATAC+TGG - chr7.3:31351670-31351689 MS.gene036944:intron 30.0%
GATATGATTTGAACAAATGG+AGG - chr7.3:31352812-31352831 MS.gene036944:CDS 30.0%
TGACAGATTCTAAGTTTGAA+GGG + chr7.3:31351564-31351583 None:intergenic 30.0%
TTTACTATTGTGTTTGCATC+AGG - chr7.3:31352241-31352260 MS.gene036944:CDS 30.0%
! ACCTTTTGTGAATTGTGAAT+TGG + chr7.3:31350988-31351007 None:intergenic 30.0%
! CTTTTTGATATGTATTCTGC+TGG - chr7.3:31352706-31352725 MS.gene036944:intron 30.0%
! GTAAATGAAGGAGTATAGTA+TGG + chr7.3:31351151-31351170 None:intergenic 30.0%
! TAAGTTGGATGCTAAATCTA+AGG - chr7.3:31350420-31350439 MS.gene036944:CDS 30.0%
! TAGCAGAAAAAGAGAGTTTT+AGG - chr7.3:31351384-31351403 MS.gene036944:CDS 30.0%
! TCTAGAAATTCTGAAGAGAA+AGG + chr7.3:31352525-31352544 None:intergenic 30.0%
! TCTTCTTTCAGAACTTCTTT+TGG + chr7.3:31352920-31352939 None:intergenic 30.0%
! TGCTATTGATGCATATCTTT+TGG - chr7.3:31350234-31350253 MS.gene036944:CDS 30.0%
! TTTGTTGTGGATAGTTTATC+TGG - chr7.3:31350268-31350287 MS.gene036944:CDS 30.0%
!! TGTTGTTTATTCTGCTGTTT+TGG - chr7.3:31350354-31350373 MS.gene036944:CDS 30.0%
!!! GATTTTACTTTTTGTTGGAC+TGG - chr7.3:31350171-31350190 MS.gene036944:CDS 30.0%
!!! GTTGGTTTTAACTTTATCCT+TGG - chr7.3:31351116-31351135 MS.gene036944:intron 30.0%
!!! TTTTTTCGTAACAACCAAGT+TGG + chr7.3:31351722-31351741 None:intergenic 30.0%
AAAGAGATGATGCTTAAGAG+TGG - chr7.3:31350391-31350410 MS.gene036944:CDS 35.0%
AAATGGCAATACCAACCTTA+AGG - chr7.3:31352743-31352762 MS.gene036944:CDS 35.0%
AACAGTAGGTGAAATGTGAT+TGG + chr7.3:31351227-31351246 None:intergenic 35.0%
AAGAGGAGTGATTTCTTGAT+TGG - chr7.3:31350304-31350323 MS.gene036944:CDS 35.0%
AATAAAACCTGCCACAAGAT+TGG + chr7.3:31351913-31351932 None:intergenic 35.0%
ATGATGCTTAAGAGTGGAAA+AGG - chr7.3:31350397-31350416 MS.gene036944:CDS 35.0%
ATTAGGCTGTTTATCCAAAC+AGG + chr7.3:31351959-31351978 None:intergenic 35.0%
ATTGAAGGGGCTAAAGAATT+TGG - chr7.3:31350873-31350892 MS.gene036944:intron 35.0%
CAAAAATAGAAGCTGATCGA+TGG - chr7.3:31350829-31350848 MS.gene036944:intron 35.0%
CTATCCACAACAAATTGCAT+TGG + chr7.3:31350262-31350281 None:intergenic 35.0%
GGCACTATAACAATATAGAG+CGG - chr7.3:31351257-31351276 MS.gene036944:intron 35.0%
GTCAAATCCCGTGAAAAAAT+CGG + chr7.3:31350634-31350653 None:intergenic 35.0%
TAAGAGTGGAAAAGGTAAGT+TGG - chr7.3:31350405-31350424 MS.gene036944:CDS 35.0%
TACAAAACTTCCAAGGAACT+TGG + chr7.3:31350955-31350974 None:intergenic 35.0%
TACGCTAATAGAGTGAAACT+AGG + chr7.3:31351320-31351339 None:intergenic 35.0%
TATCAGCTACAAAACTTCCA+AGG + chr7.3:31350962-31350981 None:intergenic 35.0%
TATGAGATTAATCCTCGAGT+TGG - chr7.3:31350597-31350616 MS.gene036944:intron 35.0%
TCACCACCTAGAAGAAAATA+AGG + chr7.3:31352976-31352995 None:intergenic 35.0%
TCTCATAGCAGATTCAAGTA+CGG + chr7.3:31350584-31350603 None:intergenic 35.0%
TGGAATTGTACTCTTGCAAA+TGG - chr7.3:31352726-31352745 MS.gene036944:intron 35.0%
TGTGCCTAATTATACACCTT+TGG - chr7.3:31351801-31351820 MS.gene036944:intron 35.0%
TGTGGTAGAACATATAGTTC+AGG + chr7.3:31351844-31351863 None:intergenic 35.0%
TTAGGCTGTTTATCCAAACA+GGG + chr7.3:31351958-31351977 None:intergenic 35.0%
TTGTGGATAGTTTATCTGGA+AGG - chr7.3:31350272-31350291 MS.gene036944:CDS 35.0%
! AAGAATACGAGTTTGTTTCC+TGG + chr7.3:31350677-31350696 None:intergenic 35.0%
! AATTTGGTGATTGTGAAGAG+TGG - chr7.3:31350889-31350908 MS.gene036944:intron 35.0%
! GGATCCAAAGGTGTATAATT+AGG + chr7.3:31351808-31351827 None:intergenic 35.0%
! TTCTTGATTGGTGGTAAGAT+AGG - chr7.3:31350316-31350335 MS.gene036944:CDS 35.0%
! TTTTACTTAACTGCAAGACC+AGG - chr7.3:31350199-31350218 MS.gene036944:CDS 35.0%
!! ATGGCTTGTTTGGAAATTTG+AGG - chr7.3:31351013-31351032 MS.gene036944:intron 35.0%
!! GTTCTGAACATTTTCAGTGT+TGG - chr7.3:31351098-31351117 MS.gene036944:intron 35.0%
!!! AGAACATCCGATTTTTTCAC+GGG - chr7.3:31350624-31350643 MS.gene036944:intron 35.0%
!!! AGGCATCCTTATTTTCTTCT+AGG - chr7.3:31352967-31352986 MS.gene036944:CDS 35.0%
!!! CAGAACATCCGATTTTTTCA+CGG - chr7.3:31350623-31350642 MS.gene036944:intron 35.0%
!!! CATCCTTATTTTCTTCTAGG+TGG - chr7.3:31352970-31352989 MS.gene036944:CDS 35.0%
!!! TAGCGTCGCATTTTTTCATA+GGG + chr7.3:31351296-31351315 None:intergenic 35.0%
!!! TTCTGCTGTTTTGGTAACAA+AGG - chr7.3:31350363-31350382 MS.gene036944:CDS 35.0%
AAACTCGTATTCTTTGCCTG+AGG - chr7.3:31350683-31350702 MS.gene036944:intron 40.0%
AACTCGTATTCTTTGCCTGA+GGG - chr7.3:31350684-31350703 MS.gene036944:intron 40.0%
AAGATAGGAGAAGGGTCATT+TGG - chr7.3:31350331-31350350 MS.gene036944:CDS 40.0%
AGGAGTGATTTCTTGATTGG+TGG - chr7.3:31350307-31350326 MS.gene036944:CDS 40.0%
AGGTGAAGGTTGGAATTGAA+GGG - chr7.3:31350859-31350878 MS.gene036944:intron 40.0%
ATACACAGTCTGTTTGCTTG+AGG + chr7.3:31352590-31352609 None:intergenic 40.0%
ATAGCACCAATAAGAACACC+TGG + chr7.3:31350220-31350239 None:intergenic 40.0%
ATAGTGATTCTGGTAGAGGT+TGG - chr7.3:31352872-31352891 MS.gene036944:CDS 40.0%
ATGTTTCGAAATGCGTTGCA+AGG - chr7.3:31351583-31351602 MS.gene036944:CDS 40.0%
CAAACAGGGCCTATATGAAT+AGG + chr7.3:31351944-31351963 None:intergenic 40.0%
CAAATCCTCGATAGTGATTC+TGG - chr7.3:31352862-31352881 MS.gene036944:CDS 40.0%
CACCTACTGTTGTCAAATAG+CGG - chr7.3:31351236-31351255 MS.gene036944:intron 40.0%
CAGAATCACTATCGAGGATT+TGG + chr7.3:31352864-31352883 None:intergenic 40.0%
CAGGAAGGATATTCAGATTG+TGG - chr7.3:31352260-31352279 MS.gene036944:CDS 40.0%
CTATTCATATAGGCCCTGTT+TGG - chr7.3:31351942-31351961 MS.gene036944:intron 40.0%
CTATTGTGTTTGCATCAGGA+AGG - chr7.3:31352245-31352264 MS.gene036944:CDS 40.0%
GATGATGCATAGGAAACCTA+TGG + chr7.3:31351074-31351093 None:intergenic 40.0%
GGAAGACTTTGTGTTTCTTG+TGG + chr7.3:31351862-31351881 None:intergenic 40.0%
GGTAGAACATATAGTTCAGG+AGG + chr7.3:31351841-31351860 None:intergenic 40.0%
TACACAGTCTGTTTGCTTGA+GGG + chr7.3:31352589-31352608 None:intergenic 40.0%
TAGTATGGTACTAGACTCCA+AGG + chr7.3:31351136-31351155 None:intergenic 40.0%
TAGTGATTCTGGTAGAGGTT+GGG - chr7.3:31352873-31352892 MS.gene036944:CDS 40.0%
TCATGTAATCAGCAAGAGTG+CGG + chr7.3:31351528-31351547 None:intergenic 40.0%
! ATTGGTGGTAAGATAGGAGA+AGG - chr7.3:31350322-31350341 MS.gene036944:CDS 40.0%
! CAGAACTCATGATGATGCAT+AGG + chr7.3:31351084-31351103 None:intergenic 40.0%
! TTCGTAACAACCAAGTTGGA+AGG + chr7.3:31351718-31351737 None:intergenic 40.0%
! TTGGTGGTAAGATAGGAGAA+GGG - chr7.3:31350323-31350342 MS.gene036944:CDS 40.0%
! TTTTCTTCTAGGTGGTGATC+AGG - chr7.3:31352978-31352997 MS.gene036944:CDS 40.0%
!! AAGGTGGAAAATGGCTTGTT+TGG - chr7.3:31351003-31351022 MS.gene036944:intron 40.0%
!!! AGCGTCGCATTTTTTCATAG+GGG + chr7.3:31351295-31351314 None:intergenic 40.0%
!!! CTAGCGTCGCATTTTTTCAT+AGG + chr7.3:31351297-31351316 None:intergenic 40.0%
!!! TACTTTTTGTTGGACTGGCA+TGG - chr7.3:31350176-31350195 MS.gene036944:CDS 40.0%
ACGATACTGGCATTGTTCAC+AGG - chr7.3:31351683-31351702 MS.gene036944:intron 45.0%
AGCTGATCGATGGAAAATGC+AGG - chr7.3:31350839-31350858 MS.gene036944:intron 45.0%
AGGAACTTGGCACATGTTTC+AGG + chr7.3:31350942-31350961 None:intergenic 45.0%
AGTTCAGGAGGACAGTAATC+AGG + chr7.3:31351829-31351848 None:intergenic 45.0%
CAAAGCAGCTTGAGACCTTA+AGG + chr7.3:31352761-31352780 None:intergenic 45.0%
CAGGTGAAGGTTGGAATTGA+AGG - chr7.3:31350858-31350877 MS.gene036944:intron 45.0%
CGATACTGGCATTGTTCACA+GGG - chr7.3:31351684-31351703 MS.gene036944:intron 45.0%
CTCGATAGTGATTCTGGTAG+AGG - chr7.3:31352868-31352887 MS.gene036944:CDS 45.0%
CTCTACCAGAATCACTATCG+AGG + chr7.3:31352870-31352889 None:intergenic 45.0%
CTGGAAGGAGAGATTTGAAG+AGG - chr7.3:31350287-31350306 MS.gene036944:CDS 45.0%
CTTTGCTCTCACCAATCTTG+TGG - chr7.3:31351899-31351918 MS.gene036944:intron 45.0%
GAAACATGTGCCAAGTTCCT+TGG - chr7.3:31350942-31350961 MS.gene036944:intron 45.0%
GCAAGACCAGGTGTTCTTAT+TGG - chr7.3:31350211-31350230 MS.gene036944:CDS 45.0%
GCAGCAACAGACCTTAGAAT+AGG - chr7.3:31351769-31351788 MS.gene036944:intron 45.0%
GGACAGTAATCAGGATCCAA+AGG + chr7.3:31351820-31351839 None:intergenic 45.0%
GGATGTAAAGCCTTCCAACT+TGG - chr7.3:31351705-31351724 MS.gene036944:intron 45.0%
GGTGAAGGTTGGAATTGAAG+GGG - chr7.3:31350860-31350879 MS.gene036944:intron 45.0%
GTTTCCTGGAGTCACTCATT+TGG + chr7.3:31350663-31350682 None:intergenic 45.0%
TCGATGGAAAATGCAGGTGA+AGG - chr7.3:31350845-31350864 MS.gene036944:intron 45.0%
TGCCGCTATTTGACAACAGT+AGG + chr7.3:31351241-31351260 None:intergenic 45.0%
TGGAAAATGCAGGTGAAGGT+TGG - chr7.3:31350849-31350868 MS.gene036944:intron 45.0%
TTCTGCTAATGCTGCCACAT+CGG + chr7.3:31351372-31351391 None:intergenic 45.0%
! AGCAAAGCTGCAATTGGTTC+TGG + chr7.3:31351886-31351905 None:intergenic 45.0%
! TATCTGCTGCTTCTGCTTTG+AGG - chr7.3:31352947-31352966 MS.gene036944:CDS 45.0%
!! AAAGCTGCAATTGGTTCTGG+AGG + chr7.3:31351883-31351902 None:intergenic 45.0%
!! GGCTCCAATGCAATTTGTTG+TGG - chr7.3:31350255-31350274 MS.gene036944:CDS 45.0%
CCTGGAGTCACTCATTTGGA+AGG + chr7.3:31350659-31350678 None:intergenic 50.0%
CCTTCCAAATGAGTGACTCC+AGG - chr7.3:31350656-31350675 MS.gene036944:intron 50.0%
GCAGCTTGAGACCTTAAGGT+TGG + chr7.3:31352757-31352776 None:intergenic 50.0%
GCAGGGTTGTCCATATCACA+GGG - chr7.3:31351499-31351518 MS.gene036944:CDS 50.0%
GGTGAGAGCAAAGCTGCAAT+TGG + chr7.3:31351892-31351911 None:intergenic 50.0%
TCTTCTAGGTGGTGATCAGG+CGG - chr7.3:31352981-31353000 MS.gene036944:CDS 50.0%
TGCAGGGTTGTCCATATCAC+AGG - chr7.3:31351498-31351517 MS.gene036944:CDS 50.0%
! CCACATCGGCTAGCAAAATC+TGG + chr7.3:31351358-31351377 None:intergenic 50.0%
! CCAGATTTTGCTAGCCGATG+TGG - chr7.3:31351355-31351374 MS.gene036944:CDS 50.0%
! TGATAACGTGACTCTCCCTC+AGG + chr7.3:31350702-31350721 None:intergenic 50.0%
AGTGCGGTCTCCCTGTGATA+TGG + chr7.3:31351512-31351531 None:intergenic 55.0%
GATGTTCTGCTGCCAACTCG+AGG + chr7.3:31350612-31350631 None:intergenic 55.0%
GCTCTCACCAATCTTGTGGC+AGG - chr7.3:31351903-31351922 MS.gene036944:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 31350157 31353041 31350157 ID=MS.gene036944
chr7.3 mRNA 31350157 31353041 31350157 ID=MS.gene036944.t1;Parent=MS.gene036944
chr7.3 exon 31352736 31353041 31352736 ID=MS.gene036944.t1.exon1;Parent=MS.gene036944.t1
chr7.3 CDS 31352736 31353041 31352736 ID=cds.MS.gene036944.t1;Parent=MS.gene036944.t1
chr7.3 exon 31352164 31352337 31352164 ID=MS.gene036944.t1.exon2;Parent=MS.gene036944.t1
chr7.3 CDS 31352164 31352337 31352164 ID=cds.MS.gene036944.t1;Parent=MS.gene036944.t1
chr7.3 exon 31351274 31351678 31351274 ID=MS.gene036944.t1.exon3;Parent=MS.gene036944.t1
chr7.3 CDS 31351274 31351678 31351274 ID=cds.MS.gene036944.t1;Parent=MS.gene036944.t1
chr7.3 exon 31350157 31350507 31350157 ID=MS.gene036944.t1.exon4;Parent=MS.gene036944.t1
chr7.3 CDS 31350157 31350507 31350157 ID=cds.MS.gene036944.t1;Parent=MS.gene036944.t1
Gene Sequence

>MS.gene036944

ATGCAGAGGTTGGAGATTTTACTTTTTGTTGGACTGGCATGGTTTTACTTAACTGCAAGACCAGGTGTTCTTATTGGTGCTATTGATGCATATCTTTTGGCTCCAATGCAATTTGTTGTGGATAGTTTATCTGGAAGGAGAGATTTGAAGAGGAGTGATTTCTTGATTGGTGGTAAGATAGGAGAAGGGTCATTTGGTGTTGTTTATTCTGCTGTTTTGGTAACAAAGGATGTGAAAGAGATGATGCTTAAGAGTGGAAAAGGTAAGTTGGATGCTAAATCTAAGGATAAAGTCATTCTTAAAAAGGTATTATTGAAATGTTCTTTTATTCTTCATTGCTTCTTAATTTAATGGTTTTATTGTTGGAATAGTTATGGCTTTCACTTCATTTGAACTAAATTGATACTATTTGCTGAGCTTGTTTCCGTACTTGAATCTGCTATGAGATTAATCCTCGAGTTGGCAGCAGAACATCCGATTTTTTCACGGGATTTGACTGCCTTCCAAATGAGTGACTCCAGGAAACAAACTCGTATTCTTTGCCTGAGGGAGAGTCACGTTATCAACTCTCCTAATACTTTGTTACTGAAATGTATAAATTTTTTGTAATGACTTAAATTAGATACATAGGATGTATGTATTTCACTATCTTTTCTTGTTATAATTTGAAAGCAAAAATAGAAGCTGATCGATGGAAAATGCAGGTGAAGGTTGGAATTGAAGGGGCTAAAGAATTTGGTGATTGTGAAGAGTGGTTCAATTATAGACTCTCAAGAGCAGCTCCTGAAACATGTGCCAAGTTCCTTGGAAGTTTTGTAGCTGATAAAACCAATTCACAATTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGTGCTCTACCTAGTAGTCTTACTAAATAATTTGTATCCATAGGTTTCCTATGCATCATCATGAGTTCTGAACATTTTCAGTGTTGGTTTTAACTTTATCCTTGGAGTCTAGTACCATACTATACTCCTTCATTTACTCAAGAACTAATAACTTTGCACAAACAAGATAAAAATGTTTTTACATAAGTGTCCAATCACATTTCACCTACTGTTGTCAAATAGCGGCACTATAACAATATAGAGCGGATTTTGATAAATCCCCTATGAAAAAATGCGACGCTAGCCTAGTTTCACTCTATTAGCGTAATTGCGACTGCTATTCCAGATTTTGCTAGCCGATGTGGCAGCATTAGCAGAAAAAGAGAGTTTTAGGTTTTTAAATCTTTATTTGAGTGAATTGCACATATGCTATGTAAGATATACGCATCTTAGGAAGTACATTACCAACTGTTCTTTATACTAATTGCAGGGTTGTCCATATCACAGGGAGACCGCACTCTTGCTGATTACATGACAGATAAAAACTTCCCTTCAAACTTAGAATCTGTCATGTTTCGAAATGCGTTGCAAGGTGTAGACTCTTCTAAAAGAAATGCACTGATCATCAAGCAAATAATGCGCCAAATCATTACATCTCTTAAGAAAATTCACGATACTGGCATTGTTCACAGGGATGTAAAGCCTTCCAACTTGGTTGTTACGAAAAAAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTTAGAATAGGAAAGAATTATGTGCCTAATTATACACCTTTGGATCCTGATTACTGTCCTCCTGAACTATATGTTCTACCACAAGAAACACAAAGTCTTCCTCCAGAACCAATTGCAGCTTTGCTCTCACCAATCTTGTGGCAGGTTTTATTTCTGTTATCCTATTCATATAGGCCCTGTTTGGATAAACAGCCTAATTAAGCTTTTATAACATCAGCGCATATCATATAAGTGCTTATGTATAAACCATTTTCATAACAAAAGTTAAAACAAAATCAAACTGTTTTCATATAAGCTATAAGTTGAAAAAAACTTATGAACATGTGATAAAGCTGATATCAGCAAAAGAAGTATATAGGCCAAGATATTGATAGAAGAATCACACATAACTTTTAAGAATGCATTAGTAGTATTTTGGCTAATGTTCCTTAGAAATATCTTAAGTAGAATTTATATTATTTTTACTATTGTGTTTGCATCAGGAAGGATATTCAGATTGTGGCATCATAATCATTTAATAATTAGGTCTATTATGAATAAGCTTCTAGTTTATGAAAGCATCAACATCAAAATAAGTTTATGTTTCTTTACTTATGCAAAAATGTTTATAAGCTTATAGATGTTTATTGAGAAATTTAATAAGATAGCTTCTGAAAAACTGAACTGTAGAAGCAAATTTCAGCATATATGAGAAGTCTTGCTTAAAAAATGCTTAGTAATTATAAGATTATTTTGATGTTTCCTTTCTCTTCAGAATTTCTAGAGAATTTTATCAAAATGACTCTTAATCTGTATACAGTCATTTCCCTCAAGCAAACAGACTGTGTATGCAACATTCATTAATACTTTTCCTTGTCTGTTTGAAATATAAATTATGTAATAAAGTGGAGATATGTGATAACTGTTGCAGTTAAACAGTCCTGATCTTTTTGATATGTATTCTGCTGGAATTGTACTCTTGCAAATGGCAATACCAACCTTAAGGTCTCAAGCTGCTTTGAAGAATTTCAATTTGGAAATGAGGACATATGGATATGATTTGAACAAATGGAGGGACTCTACTCGCATGAAGTCTAACTTCCAAATCCTCGATAGTGATTCTGGTAGAGGTTGGGACTTAGCATCAAAGCTTATCTCCAAAAGAAGTTCTGAAAGAAGAAAGCGTTTATCTGCTGCTTCTGCTTTGAGGCATCCTTATTTTCTTCTAGGTGGTGATCAGGCGGCTGCAGTTCTTTCAAAATTCAGCTTTAGCACTAAGTGA
Protein sequence

>MS.gene036944.t1

MQRLEILLFVGLAWFYLTARPGVLIGAIDAYLLAPMQFVVDSLSGRRDLKRSDFLIGGKIGEGSFGVVYSAVLVTKDVKEMMLKSGKGKLDAKSKDKVILKKVKVGIEGAKEFGDCEEWFNYRLSRAAPETCAKFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMTDKNFPSNLESVMFRNALQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPSNLVVTKKGQIKLIDFGAATDLRIGKNYVPNYTPLDPDYCPPELYVLPQETQSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSQAALKNFNLEMRTYGYDLNKWRDSTRMKSNFQILDSDSGRGWDLASKLISKRSSERRKRLSAASALRHPYFLLGGDQAAAVLSKFSFSTK