AlfalfaGEDB | MS.gene036949

M. sativa cultivar XinJiangDaYe / MS.gene036949

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036949.t1	XP_003623638.1	91.9	283	15	2	1	275	1	283	4.50E-148	533.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036949.t1	Q9LY00	37.1	248	119	8	13	247	10	233	3.2e-30	133.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036949.t1	G7KY68	91.9	283	15	2	1	275	1	283	3.2e-148	533.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene036949.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036949.t1	MTR_7g073430	91.873	283	15	2	1	275	1	283	0.0	536
MS.gene036949.t1	MTR_7g073380	81.973	294	34	4	1	275	1	294	9.51e-176	486
MS.gene036949.t1	MTR_0002s1250	43.548	248	122	7	12	253	5	240	1.30e-61	196
MS.gene036949.t1	MTR_8g005750	49.515	206	89	4	15	218	6	198	4.61e-60	192
MS.gene036949.t1	MTR_8g032510	46.262	214	102	4	13	218	7	215	1.69e-56	183
MS.gene036949.t1	MTR_2g075690	38.783	263	124	8	1	229	1	260	6.48e-48	161
MS.gene036949.t1	MTR_2g075700	38.735	253	126	5	6	229	7	259	2.03e-43	150
MS.gene036949.t1	MTR_2g075680	38.372	258	122	7	10	231	12	268	4.60e-39	139
MS.gene036949.t1	MTR_5g067700	38.362	232	109	13	1	228	1	202	2.14e-37	132
MS.gene036949.t1	MTR_3g093830	43.386	189	84	9	20	195	23	201	3.89e-35	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene036949.t1	AT3G56400	41.436	181	82	4	13	180	10	179	1.99e-38	137
MS.gene036949.t1	AT2G40750	36.364	209	101	8	3	180	4	211	3.22e-27	108
MS.gene036949.t1	AT1G66550	33.500	200	115	6	13	210	8	191	1.47e-26	104
MS.gene036949.t1	AT5G01900	35.417	192	102	5	13	197	7	183	8.78e-26	102
MS.gene036949.t1	AT1G66550	33.000	200	111	6	13	210	8	186	1.28e-25	102
MS.gene036949.t1	AT2G46400	30.894	246	117	8	14	234	8	225	7.20e-25	100
MS.gene036949.t1	AT5G22570	34.637	179	98	5	13	185	9	174	1.55e-24	100
MS.gene036949.t1	AT1G66560	35.673	171	93	5	15	183	10	165	5.56e-24	97.8
MS.gene036949.t1	AT4G11070	36.041	197	95	6	11	180	8	200	1.27e-23	98.2
MS.gene036949.t1	AT4G11070	37.079	178	87	5	11	180	8	168	5.05e-22	93.2

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Find 58 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGACAGTCTTGTTTGGC+TGG	0.470880	7.3:-31391823	None:intergenic
AAATCAGAGCCCTCAGAAGT+AGG	0.513880	7.3:-31389889	None:intergenic
AACAATAACCCTACTTCTGA+GGG	0.553155	7.3:+31389880	MS.gene036949:CDS
AACACGGAAGAGTGATCGGT+AGG	0.657967	7.3:-31391772	None:intergenic
AAGAAACACGGAAGAGTGAT+CGG	0.578189	7.3:-31391776	None:intergenic
AATCAGAGCCCTCAGAAGTA+GGG	0.528391	7.3:-31389888	None:intergenic
AATCTAGCTCATGGTGGTCG+TGG	0.489503	7.3:+31389691	MS.gene036949:CDS
AATGAAAATCTAGCTCATGG+TGG	0.721998	7.3:+31389685	MS.gene036949:CDS
AATTTCACAAACATGGGAGA+AGG	0.598123	7.3:+31390743	MS.gene036949:CDS
ACAAGTATGATGGCCAGAAT+AGG	0.508994	7.3:-31391713	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAGGAAAATTTCACAAACA+TGG	+	chr7.3:31390736-31390755	MS.gene036949:intron	30.0%
CACTATTTGTACAAATTGTC+CGG	+	chr7.3:31391308-31391327	MS.gene036949:intron	30.0%
CAGGAAAATTTCACAAACAT+GGG	+	chr7.3:31390737-31390756	MS.gene036949:intron	30.0%
GAACAATAGGGAATTAGTAA+AGG	-	chr7.3:31389857-31389876	None:intergenic	30.0%
GGTTATTGTTCAAGAACAAT+AGG	-	chr7.3:31389870-31389889	None:intergenic	30.0%
GTTGTCAAAACTAAGAAACA+CGG	-	chr7.3:31391791-31391810	None:intergenic	30.0%
TAGAAACTCCCTTGTAAAAA+AGG	-	chr7.3:31390879-31390898	None:intergenic	30.0%
TGTGTCGTATAAATATACCT+TGG	-	chr7.3:31390843-31390862	None:intergenic	30.0%
TTAACTGTTGAGATTTGACT+TGG	+	chr7.3:31391367-31391386	MS.gene036949:intron	30.0%
TTCAAAAGATCTTCAGCAAA+TGG	-	chr7.3:31389820-31389839	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	31389679	31392023	31389679	ID=MS.gene036949
chr7.3	mRNA	31389679	31392023	31389679	ID=MS.gene036949.t1;Parent=MS.gene036949
chr7.3	exon	31389679	31389995	31389679	ID=MS.gene036949.t1.exon1;Parent=MS.gene036949.t1
chr7.3	CDS	31389679	31389995	31389679	ID=cds.MS.gene036949.t1;Parent=MS.gene036949.t1
chr7.3	exon	31390740	31390844	31390740	ID=MS.gene036949.t1.exon2;Parent=MS.gene036949.t1
chr7.3	CDS	31390740	31390844	31390740	ID=cds.MS.gene036949.t1;Parent=MS.gene036949.t1
chr7.3	exon	31391618	31392023	31391618	ID=MS.gene036949.t1.exon3;Parent=MS.gene036949.t1
chr7.3	CDS	31391618	31392023	31391618	ID=cds.MS.gene036949.t1;Parent=MS.gene036949.t1

Gene Sequence

>MS.gene036949

ATGGAAAATGAAAATCTAGCTCATGGTGGTCGTGGAAAGATAGTTGATGAGTTGTTAAGAGGCCATCAACTTGCAAACCAACTTAGAAATATTCTTAATGAAAGTGGTGATATTGATAATACTGATGGATCAACAATACCATTTGCTGAAGATCTTTTGAAGGAAGTGCTTACCACCTTTACTAATTCCCTATTGTTCTTGAACAATAACCCTACTTCTGAGGGCTCTGATTTGCAACTCACCAAATCTGAAGACTCTTTGGAAAGTAATTGCAAGAGTTCCATTGTTAAGGAACGAAGAGGCTGTTACAAAAGAAGGTAATTATTATTACTTAGTAATTTTTCTTATATTTCTTATTGTTTTATAAATCTTTGCATATGTGTGCGCATCTGAGATCCATTTAAGAGTCGACTTCTTTTAACATATATTTTTTCAAACACACTGCTTAGGGATTGAATCCCTAACTCTCCCATTATATCTATATCCACATTTCTACATCTACAATTTGTACATGATTTACTATATAGTTTTGTTTAGGAATATAGTGCTTTTTTCCTTCTTTTTTTTTTTAAGAAAATATTTTATTTTGGCTGATATATTTTTTTCCTCTTATTTATTGACTAATGTAATTTCACTTATATTTGAACTTTTGGATGAGGTAATGTATGCTTTGTTATTTAATTTGATTACAGACTATTAGCCAATTAATACTTTTGTTGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGGTGACCATACTTTTGTTATTGTTTGTCTTTTACATATGAGTAATATTGGACCCCATCAATTATTGTTCATCATCATTGAAGGACTATGTTATATAATTAGGAACGTCCTCTTTATTAATTTGCTCGTTTCTAAAGTTTGTTAGTTATGGTTTGAGCTGGCACAGTAAAATTATTTGATTATATATATGTGTCTACACACACACACACACATATCATTTCTTGGTTGAGTTTTTTTTTTTTGTTACAATTGGAAAACTTATCAGAAAATATATACAATTCTTGTTTACAGGAAAATTTCACAAACATGGGAGAAGGAGTCTGAGCTGCCTGAGGAAGATGGTCATCAGTGGAGAAAGTATGGCCAAAAAAAGATTTTGCACACCGATTTTCCAAGGTATATTTATACGACACATTAACCGCACAAACCTTTTTTACAAGGGAGTTTCTACTACACACTTGTAAATTGATGTGTATCGATGCACTTGTTTCCTAATTCAATAAATTAACTAACATTTTTATTAATTAAAAAAGTTATTTGTCGATTTTATATTTTAGAAAACACTATTTCATAAGAAAAAAAATATCATTTCATTGTTTATTAAGAATCATACTGAATATTTTACATTTTATAGCAAAAATAAATAAATCAGTATTCACTATTATGAGTAATAAATATTTAAAACAATAAAATTTTATTTCATTGAAACCTTTAATAAATAAGATTTAGTTATTATAATTGTAAATGATAGAAAATAATTTAAAAAAAAAATTCAGGTATTAATTTAAGGACTCAATGCACTCGAATTTTCAAGTGTAAACTAGAAATGACCTTTTTACAAGGTCATTCAATTAAATTTCACTATTTGTACAAATTGTCCGGTTAATTAATTTTCAAAACAATTAATCTAAATTATCATTAACTGTTGAGATTTGACTTGGTTTAATTTATGTATGTCTCTTATATCTGTTTATATGAAATTTATTTATTAGCTAGCATCTTAGGGTTGAGTAGGTCCAGTGATTTAGGTCAAAGGTTAATTGAACTGAAAGAGTTTCTGATGGATAAATAGACATGACAACTAATTACAATTTGTTAATACAAACTAAGATCCTCTACTTCTTACTAATCAATATCACTAAATGAATATGTACTTATGTGCTTTGCAGAAACTACTACAGGTGCACTCACAAACATGATCAAGGTTGCAAAGCAACAAAACAAGTCCAAAGAATTCAAGAAGATCCACCTCTTCACAAGACAACCTATTCTGGCCATCATACTTGTAGAATCTTGCAAAACCCTGAAATCATGGTGGATTATCCTACCGATCACTCTTCCGTGTTTCTTAGTTTTGACAACTCTTTCCCAACACCAGCCAAACAAGACTGTCCTTTTCTCTCAGTGAAAAAGGAGGAGTGCAAGGAAGATATTGTTCATCCACTCTCTGGACTCACTTTTGATGATCCAGAAAAGGATGTCACACTATCATCAACACTTGATTCTCATGATCACCTAGGTGTCCATATTTCTGATATCATGTATGATGATGTCCTTAATTGGCCTCTTTCTTAA

Protein sequence

>MS.gene036949.t1

MENENLAHGGRGKIVDELLRGHQLANQLRNILNESGDIDNTDGSTIPFAEDLLKEVLTTFTNSLLFLNNNPTSEGSDLQLTKSEDSLESNCKSSIVKERRGCYKRRKISQTWEKESELPEEDGHQWRKYGQKKILHTDFPRNYYRCTHKHDQGCKATKQVQRIQEDPPLHKTTYSGHHTCRILQNPEIMVDYPTDHSSVFLSFDNSFPTPAKQDCPFLSVKKEECKEDIVHPLSGLTFDDPEKDVTLSSTLDSHDHLGVHISDIMYDDVLNWPLS