AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036949

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036949.t1 MTR_7g073430 91.873 283 15 2 1 275 1 283 0.0 536
MS.gene036949.t1 MTR_7g073380 81.973 294 34 4 1 275 1 294 9.51e-176 486
MS.gene036949.t1 MTR_0002s1250 43.548 248 122 7 12 253 5 240 1.30e-61 196
MS.gene036949.t1 MTR_8g005750 49.515 206 89 4 15 218 6 198 4.61e-60 192
MS.gene036949.t1 MTR_8g032510 46.262 214 102 4 13 218 7 215 1.69e-56 183
MS.gene036949.t1 MTR_2g075690 38.783 263 124 8 1 229 1 260 6.48e-48 161
MS.gene036949.t1 MTR_2g075700 38.735 253 126 5 6 229 7 259 2.03e-43 150
MS.gene036949.t1 MTR_2g075680 38.372 258 122 7 10 231 12 268 4.60e-39 139
MS.gene036949.t1 MTR_5g067700 38.362 232 109 13 1 228 1 202 2.14e-37 132
MS.gene036949.t1 MTR_3g093830 43.386 189 84 9 20 195 23 201 3.89e-35 128
MS.gene036949.t1 MTR_2g075750 55.446 101 44 1 106 205 13 113 6.19e-35 124
MS.gene036949.t1 MTR_2g075610 47.727 132 62 3 106 232 14 143 2.00e-34 123
MS.gene036949.t1 MTR_7g117200 34.848 198 100 5 11 194 9 191 8.78e-28 109
MS.gene036949.t1 MTR_3g090860 33.990 203 101 4 9 185 2 197 5.57e-27 107
MS.gene036949.t1 MTR_8g099350 33.663 202 101 7 1 180 1 191 1.00e-23 99.0
MS.gene036949.t1 MTR_8g027860 52.941 85 32 1 104 180 111 195 2.95e-23 97.4
MS.gene036949.t1 MTR_5g067680 41.667 108 57 2 74 180 159 261 2.70e-19 86.7
MS.gene036949.t1 MTR_7g028415 55.932 59 23 1 121 179 93 148 6.00e-16 73.9
MS.gene036949.t1 MTR_7g028710 55.932 59 23 1 121 179 93 148 6.00e-16 73.9
MS.gene036949.t1 MTR_5g073620 42.667 75 42 1 117 190 668 742 6.06e-15 75.1
MS.gene036949.t1 MTR_8g092140 42.169 83 38 3 96 178 142 214 6.29e-14 69.7
MS.gene036949.t1 MTR_5g043880 38.710 93 53 2 121 212 124 213 1.26e-13 69.7
MS.gene036949.t1 MTR_1g086790 50.847 59 26 1 121 179 158 213 1.67e-13 69.7
MS.gene036949.t1 MTR_7g110720 39.316 117 65 3 65 178 158 271 2.07e-13 70.1
MS.gene036949.t1 MTR_7g079010 50.000 58 26 1 121 178 141 195 2.95e-13 67.8
MS.gene036949.t1 MTR_3g095080 49.153 59 27 1 121 179 168 223 3.37e-13 68.2
MS.gene036949.t1 MTR_3g095080 49.153 59 27 1 121 179 144 199 5.10e-13 67.0
MS.gene036949.t1 MTR_7g109800 50.847 59 26 1 121 179 145 200 5.70e-13 68.2
MS.gene036949.t1 MTR_8g096730 48.276 58 27 1 121 178 70 124 6.72e-13 65.1
MS.gene036949.t1 MTR_2g088000 36.449 107 65 2 96 202 325 428 7.46e-13 68.6
MS.gene036949.t1 MTR_8g028565 44.872 78 39 2 104 179 136 211 1.08e-12 67.4
MS.gene036949.t1 MTR_4g094588 51.724 58 25 1 121 178 178 232 1.28e-12 67.4
MS.gene036949.t1 MTR_3g053330 38.384 99 58 2 104 202 235 330 1.53e-12 67.4
MS.gene036949.t1 MTR_5g091390 50.000 58 26 1 121 178 157 211 1.93e-12 66.6
MS.gene036949.t1 MTR_8g087000 36.893 103 53 2 115 217 71 161 2.04e-12 65.9
MS.gene036949.t1 MTR_8g087000 36.893 103 53 2 115 217 70 160 2.25e-12 65.5
MS.gene036949.t1 MTR_7g110720 46.053 76 38 2 103 178 172 244 5.42e-12 65.9
MS.gene036949.t1 MTR_8g007270 43.529 85 43 2 94 178 129 208 5.81e-12 64.3
MS.gene036949.t1 MTR_4g049790 38.835 103 52 3 76 178 276 367 6.55e-12 65.9
MS.gene036949.t1 MTR_2g033820 47.458 59 28 1 121 179 203 258 7.15e-12 65.5
MS.gene036949.t1 MTR_1g009613 36.842 95 56 3 85 178 226 317 7.16e-12 65.1
MS.gene036949.t1 MTR_2g032030 35.185 108 56 2 83 178 217 322 8.57e-12 65.1
MS.gene036949.t1 MTR_4g122530 44.828 58 29 1 121 178 208 262 9.92e-12 65.1
MS.gene036949.t1 MTR_2g032030 35.185 108 56 2 83 178 217 322 1.04e-11 65.1
MS.gene036949.t1 MTR_7g062220 51.724 58 25 1 121 178 124 178 1.82e-11 63.9
MS.gene036949.t1 MTR_3g104750 47.458 59 28 1 121 179 104 159 1.94e-11 61.6
MS.gene036949.t1 MTR_4g127040 40.000 85 40 3 102 178 219 300 2.01e-11 63.5
MS.gene036949.t1 MTR_4g082580 36.364 88 53 1 121 208 278 362 2.11e-11 63.9
MS.gene036949.t1 MTR_2g023930 38.384 99 50 2 80 178 273 360 3.14e-11 63.5
MS.gene036949.t1 MTR_1g015140 32.800 125 68 4 66 179 38 157 3.46e-11 60.8
MS.gene036949.t1 MTR_2g016770 39.785 93 52 3 87 178 1 90 6.48e-11 61.2
MS.gene036949.t1 MTR_2g016770 40.741 81 45 2 99 178 4 82 8.69e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036949.t1 AT3G56400 41.436 181 82 4 13 180 10 179 1.99e-38 137
MS.gene036949.t1 AT2G40750 36.364 209 101 8 3 180 4 211 3.22e-27 108
MS.gene036949.t1 AT1G66550 33.500 200 115 6 13 210 8 191 1.47e-26 104
MS.gene036949.t1 AT5G01900 35.417 192 102 5 13 197 7 183 8.78e-26 102
MS.gene036949.t1 AT1G66550 33.000 200 111 6 13 210 8 186 1.28e-25 102
MS.gene036949.t1 AT2G46400 30.894 246 117 8 14 234 8 225 7.20e-25 100
MS.gene036949.t1 AT5G22570 34.637 179 98 5 13 185 9 174 1.55e-24 100
MS.gene036949.t1 AT1G66560 35.673 171 93 5 15 183 10 165 5.56e-24 97.8
MS.gene036949.t1 AT4G11070 36.041 197 95 6 11 180 8 200 1.27e-23 98.2
MS.gene036949.t1 AT4G11070 37.079 178 87 5 11 180 8 168 5.05e-22 93.2
MS.gene036949.t1 AT2G40740 31.414 191 104 5 15 180 44 232 6.09e-22 93.2
MS.gene036949.t1 AT2G40740 31.414 191 104 5 15 180 53 241 7.13e-22 93.2
MS.gene036949.t1 AT1G66600 33.889 180 88 7 13 183 8 165 1.47e-21 90.9
MS.gene036949.t1 AT4G23810 49.412 85 35 1 104 180 133 217 1.50e-19 87.0
MS.gene036949.t1 AT1G80590 29.648 199 102 5 12 208 7 169 2.94e-19 84.7
MS.gene036949.t1 AT5G24110 33.146 178 92 4 23 185 12 177 1.33e-18 84.0
MS.gene036949.t1 AT5G45260 40.000 105 58 2 79 178 1161 1265 2.59e-15 76.3
MS.gene036949.t1 AT1G69310 38.017 121 57 5 68 178 89 201 3.88e-15 73.9
MS.gene036949.t1 AT1G69310 38.017 121 57 5 68 178 89 201 3.88e-15 73.9
MS.gene036949.t1 AT1G69310 38.017 121 57 5 68 178 89 201 3.88e-15 73.9
MS.gene036949.t1 AT5G13080 47.761 67 32 1 121 187 67 130 1.42e-13 67.0
MS.gene036949.t1 AT5G41570 51.724 58 25 1 121 178 98 152 1.59e-13 67.8
MS.gene036949.t1 AT4G04450 37.719 114 68 2 90 202 166 277 1.61e-13 70.5
MS.gene036949.t1 AT2G34830 35.246 122 65 3 62 178 158 270 2.12e-13 70.1
MS.gene036949.t1 AT4G04450 37.719 114 68 2 90 202 260 371 2.28e-13 70.1
MS.gene036949.t1 AT2G34830 35.246 122 65 3 62 178 167 279 2.41e-13 70.1
MS.gene036949.t1 AT5G49520 49.153 59 27 1 121 179 221 276 3.46e-13 69.3
MS.gene036949.t1 AT3G01970 42.045 88 40 2 121 208 65 141 3.54e-13 65.9
MS.gene036949.t1 AT1G64000 50.000 58 26 1 121 178 114 168 7.22e-13 66.2
MS.gene036949.t1 AT2G47260 37.634 93 54 2 88 179 140 229 8.44e-13 67.8
MS.gene036949.t1 AT1G29860 42.308 78 41 2 106 182 120 194 8.80e-13 67.4
MS.gene036949.t1 AT4G18170 47.692 65 31 1 121 185 172 233 1.30e-12 67.4
MS.gene036949.t1 AT2G37260 46.970 66 32 1 121 186 349 411 1.62e-12 67.4
MS.gene036949.t1 AT2G37260 46.970 66 32 1 121 186 267 329 2.05e-12 67.0
MS.gene036949.t1 AT2G23320 38.462 104 53 3 83 178 195 295 2.06e-12 66.6
MS.gene036949.t1 AT2G37260 46.970 66 32 1 121 186 269 331 2.13e-12 66.6
MS.gene036949.t1 AT4G39410 40.000 90 49 2 89 178 193 277 2.44e-12 66.2
MS.gene036949.t1 AT5G46350 46.154 65 32 1 121 185 183 244 2.57e-12 66.2
MS.gene036949.t1 AT2G46130 46.552 58 28 1 121 178 30 84 2.73e-12 62.4
MS.gene036949.t1 AT1G62300 48.649 74 35 2 106 178 296 367 4.36e-12 66.2
MS.gene036949.t1 AT2G44745 48.276 58 27 1 121 178 145 199 4.39e-12 64.3
MS.gene036949.t1 AT5G52830 38.596 114 54 4 126 235 170 271 6.38e-12 65.5
MS.gene036949.t1 AT4G01250 36.364 110 62 3 71 178 80 183 8.38e-12 64.7
MS.gene036949.t1 AT1G29280 46.667 60 30 1 119 178 72 129 1.29e-11 63.5
MS.gene036949.t1 AT1G68150 34.307 137 76 4 122 250 236 366 1.81e-11 64.3
MS.gene036949.t1 AT3G62340 43.590 78 36 2 121 198 118 187 2.33e-11 63.2
MS.gene036949.t1 AT5G26170 44.828 58 29 1 121 178 113 167 3.42e-11 61.2
MS.gene036949.t1 AT4G22070 54.386 57 24 1 122 178 298 352 3.57e-11 63.5
MS.gene036949.t1 AT4G22070 54.386 57 24 1 122 178 298 352 3.57e-11 63.5
MS.gene036949.t1 AT4G22070 54.386 57 24 1 122 178 298 352 3.57e-11 63.5
MS.gene036949.t1 AT4G22070 54.386 57 24 1 122 178 298 352 3.57e-11 63.5
MS.gene036949.t1 AT5G45050 35.185 108 56 3 81 178 993 1096 7.37e-11 63.2
MS.gene036949.t1 AT5G45050 35.185 108 56 3 81 178 1132 1235 7.56e-11 62.8
MS.gene036949.t1 AT5G45050 35.185 108 56 3 81 178 1104 1207 8.57e-11 62.8
MS.gene036949.t1 AT1G30650 46.774 62 31 1 117 178 213 272 8.63e-11 62.4

Find 58 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATAATCCACCATGATTTC+AGG 0.223815 7.3:-31391751 None:intergenic
GTGGATCTTCTTGAATTCTT+TGG 0.233438 7.3:-31391675 None:intergenic
TTTAAGAAAGAGGCCAATTA+AGG 0.247289 7.3:-31392002 None:intergenic
CACCAAATCTGAAGACTCTT+TGG 0.292085 7.3:+31389918 MS.gene036949:CDS
CATACATGATATCAGAAATA+TGG 0.313913 7.3:-31391972 None:intergenic
CTTCACAAGACAACCTATTC+TGG 0.318721 7.3:+31391700 MS.gene036949:CDS
TTCCAAAGAGTCTTCAGATT+TGG 0.321094 7.3:-31389920 None:intergenic
GGTTATTGTTCAAGAACAAT+AGG 0.331883 7.3:-31389867 None:intergenic
TAAGTTGGTTTGCAAGTTGA+TGG 0.334142 7.3:-31389741 None:intergenic
TGTATGATGATGTCCTTAAT+TGG 0.354460 7.3:+31391989 MS.gene036949:CDS
TTGCAAGAGTTCCATTGTTA+AGG 0.357033 7.3:+31389948 MS.gene036949:CDS
ATAAATATACCTTGGAAAAT+CGG 0.383422 7.3:-31390832 None:intergenic
GGTCATCAGTGGAGAAAGTA+TGG 0.398881 7.3:+31390789 MS.gene036949:CDS
CATTAAGAATATTTCTAAGT+TGG 0.405861 7.3:-31389756 None:intergenic
TTCAAAAGATCTTCAGCAAA+TGG 0.413114 7.3:-31389817 None:intergenic
AGAAATATTCTTAATGAAAG+TGG 0.420955 7.3:+31389763 MS.gene036949:CDS
GAGAAAAGGACAGTCTTGTT+TGG 0.421010 7.3:-31391827 None:intergenic
GTTATTGTTCAAGAACAATA+GGG 0.426826 7.3:-31389866 None:intergenic
CAGTCTTGTTTGGCTGGTGT+TGG 0.428837 7.3:-31391817 None:intergenic
ATAGTTGATGAGTTGTTAAG+AGG 0.433990 7.3:+31389718 MS.gene036949:CDS
GCAAGATTCTACAAGTATGA+TGG 0.441895 7.3:-31391723 None:intergenic
GATAATCCACCATGATTTCA+GGG 0.452507 7.3:-31391750 None:intergenic
AGTCTTGTTTGGCTGGTGTT+GGG 0.452762 7.3:-31391816 None:intergenic
CTTGCAAAACCCTGAAATCA+TGG 0.466864 7.3:+31391741 MS.gene036949:CDS
AAAGGACAGTCTTGTTTGGC+TGG 0.470880 7.3:-31391823 None:intergenic
GATATTGTTCATCCACTCTC+TGG 0.472425 7.3:+31391877 MS.gene036949:CDS
CACTGATGACCATCTTCCTC+AGG 0.473789 7.3:-31390777 None:intergenic
AATCTAGCTCATGGTGGTCG+TGG 0.489503 7.3:+31389691 MS.gene036949:CDS
CAGGAAAATTTCACAAACAT+GGG 0.503777 7.3:+31390737 MS.gene036949:intron
ACAAGTATGATGGCCAGAAT+AGG 0.508994 7.3:-31391713 None:intergenic
AAATCAGAGCCCTCAGAAGT+AGG 0.513880 7.3:-31389889 None:intergenic
TCTGAGCTGCCTGAGGAAGA+TGG 0.519536 7.3:+31390768 MS.gene036949:CDS
ACAGGAAAATTTCACAAACA+TGG 0.526761 7.3:+31390736 MS.gene036949:intron
AATCAGAGCCCTCAGAAGTA+GGG 0.528391 7.3:-31389888 None:intergenic
GAACAATAGGGAATTAGTAA+AGG 0.532955 7.3:-31389854 None:intergenic
GAAGAGGCTGTTACAAAAGA+AGG 0.533769 7.3:+31389974 MS.gene036949:CDS
GAAAATGAAAATCTAGCTCA+TGG 0.549115 7.3:+31389682 MS.gene036949:CDS
AACAATAACCCTACTTCTGA+GGG 0.553155 7.3:+31389880 MS.gene036949:CDS
GAACAATAACCCTACTTCTG+AGG 0.557215 7.3:+31389879 MS.gene036949:CDS
GCCTCTTCGTTCCTTAACAA+TGG 0.560157 7.3:-31389959 None:intergenic
CAATAGGGAATTAGTAAAGG+TGG 0.561256 7.3:-31389851 None:intergenic
TGCACTCACAAACATGATCA+AGG 0.563442 7.3:+31391631 MS.gene036949:CDS
GGTGATATTGATAATACTGA+TGG 0.570618 7.3:+31389784 MS.gene036949:CDS
TGCTTTGCAGAAACTACTAC+AGG 0.577466 7.3:+31391608 MS.gene036949:intron
AAGAAACACGGAAGAGTGAT+CGG 0.578189 7.3:-31391776 None:intergenic
TAGGTTGTCTTGTGAAGAGG+TGG 0.580386 7.3:-31391694 None:intergenic
GAAGGAGTCTGAGCTGCCTG+AGG 0.592747 7.3:+31390761 MS.gene036949:CDS
AATTTCACAAACATGGGAGA+AGG 0.598123 7.3:+31390743 MS.gene036949:CDS
GAATAGGTTGTCTTGTGAAG+AGG 0.606524 7.3:-31391697 None:intergenic
TCAAAAGTGAGTCCAGAGAG+TGG 0.622190 7.3:-31391889 None:intergenic
TATCAGAAATATGGACACCT+AGG 0.634267 7.3:-31391963 None:intergenic
TCCATTGTTAAGGAACGAAG+AGG 0.645691 7.3:+31389958 MS.gene036949:CDS
AACACGGAAGAGTGATCGGT+AGG 0.657967 7.3:-31391772 None:intergenic
CTTGATTCTCATGATCACCT+AGG 0.662285 7.3:+31391946 MS.gene036949:CDS
CTGAGGAAGATGGTCATCAG+TGG 0.677795 7.3:+31390778 MS.gene036949:CDS
GTTGTCAAAACTAAGAAACA+CGG 0.709857 7.3:-31391788 None:intergenic
AATGAAAATCTAGCTCATGG+TGG 0.721998 7.3:+31389685 MS.gene036949:CDS
GCAAAACCCTGAAATCATGG+TGG 0.724951 7.3:+31391744 MS.gene036949:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTATTATTATTATTT+TGG + chr7.3:31390429-31390448 MS.gene036949:intron 0.0%
!!! AACTAAATCTTATTTATTAA+AGG - chr7.3:31391160-31391179 None:intergenic 10.0%
!!! TTTTCTTAAAAAAAAAAAGA+AGG - chr7.3:31390236-31390255 None:intergenic 10.0%
!!! TTTTTTTTTTTTGTTACAAT+TGG + chr7.3:31390679-31390698 MS.gene036949:intron 10.0%
!! AAAATTCAGGTATTAATTTA+AGG + chr7.3:31391216-31391235 MS.gene036949:intron 15.0%
!! GTTAGTTAATTTATTGAATT+AGG - chr7.3:31390942-31390961 None:intergenic 15.0%
!!! ATAACAACAAAAGTATTAAT+TGG - chr7.3:31390382-31390401 None:intergenic 15.0%
!!! TGTTTTGAAAATTAATTAAC+CGG - chr7.3:31391330-31391349 None:intergenic 15.0%
!!! TTTACTATATAGTTTTGTTT+AGG + chr7.3:31390194-31390213 MS.gene036949:intron 15.0%
!! AAATGTGGATATAGATATAA+TGG - chr7.3:31390151-31390170 None:intergenic 20.0%
!! AAGGACTATGTTATATAATT+AGG + chr7.3:31390529-31390548 MS.gene036949:intron 20.0%
!! AATGTGGATATAGATATAAT+GGG - chr7.3:31390150-31390169 None:intergenic 20.0%
!! AGAAATATTCTTAATGAAAG+TGG + chr7.3:31389763-31389782 MS.gene036949:CDS 20.0%
!! ATAAATATACCTTGGAAAAT+CGG - chr7.3:31390835-31390854 None:intergenic 20.0%
!! TACATTAGTCAATAAATAAG+AGG - chr7.3:31390287-31390306 None:intergenic 20.0%
!!! CATTAAGAATATTTCTAAGT+TGG - chr7.3:31389759-31389778 None:intergenic 20.0%
!!! CTTTTACATATGAGTAATAT+TGG + chr7.3:31390477-31390496 MS.gene036949:intron 20.0%
!!! TATATACAATTCTTGTTTAC+AGG + chr7.3:31390718-31390737 MS.gene036949:intron 20.0%
!!! TTCACTTATATTTGAACTTT+TGG + chr7.3:31390309-31390328 MS.gene036949:intron 20.0%
!!! TTTCTAAAGTTTGTTAGTTA+TGG + chr7.3:31390577-31390596 MS.gene036949:intron 20.0%
! AAACGAGCAAATTAATAAAG+AGG - chr7.3:31390560-31390579 None:intergenic 25.0%
! AAATTGTAGATGTAGAAATG+TGG - chr7.3:31390166-31390185 None:intergenic 25.0%
! AATTGAATGACCTTGTAAAA+AGG - chr7.3:31391282-31391301 None:intergenic 25.0%
! ATGATGAACAATAATTGATG+GGG - chr7.3:31390504-31390523 None:intergenic 25.0%
! ATTTATTAGCTAGCATCTTA+GGG + chr7.3:31391432-31391451 MS.gene036949:intron 25.0%
! CATACATGATATCAGAAATA+TGG - chr7.3:31391975-31391994 None:intergenic 25.0%
! GACAAACAATAACAAAAGTA+TGG - chr7.3:31390458-31390477 None:intergenic 25.0%
! GATGATGAACAATAATTGAT+GGG - chr7.3:31390505-31390524 None:intergenic 25.0%
! GTTATTGTTCAAGAACAATA+GGG - chr7.3:31389869-31389888 None:intergenic 25.0%
! TATTTATTAGCTAGCATCTT+AGG + chr7.3:31391431-31391450 MS.gene036949:intron 25.0%
! TTATTGTTCATCATCATTGA+AGG + chr7.3:31390510-31390529 MS.gene036949:intron 25.0%
!! TATATTTGAACTTTTGGATG+AGG + chr7.3:31390315-31390334 MS.gene036949:intron 25.0%
!! TATTGATTAGTAAGAAGTAG+AGG - chr7.3:31391564-31391583 None:intergenic 25.0%
!! TGATGATGAACAATAATTGA+TGG - chr7.3:31390506-31390525 None:intergenic 25.0%
ACAGGAAAATTTCACAAACA+TGG + chr7.3:31390736-31390755 MS.gene036949:intron 30.0%
CACTATTTGTACAAATTGTC+CGG + chr7.3:31391308-31391327 MS.gene036949:intron 30.0%
CAGGAAAATTTCACAAACAT+GGG + chr7.3:31390737-31390756 MS.gene036949:intron 30.0%
GAACAATAGGGAATTAGTAA+AGG - chr7.3:31389857-31389876 None:intergenic 30.0%
GGTTATTGTTCAAGAACAAT+AGG - chr7.3:31389870-31389889 None:intergenic 30.0%
GTTGTCAAAACTAAGAAACA+CGG - chr7.3:31391791-31391810 None:intergenic 30.0%
TAGAAACTCCCTTGTAAAAA+AGG - chr7.3:31390879-31390898 None:intergenic 30.0%
TGTGTCGTATAAATATACCT+TGG - chr7.3:31390843-31390862 None:intergenic 30.0%
TTAACTGTTGAGATTTGACT+TGG + chr7.3:31391367-31391386 MS.gene036949:intron 30.0%
TTCAAAAGATCTTCAGCAAA+TGG - chr7.3:31389820-31389839 None:intergenic 30.0%
! AAAAGAAGTCGACTCTTAAA+TGG - chr7.3:31390078-31390097 None:intergenic 30.0%
! ATAGATATAATGGGAGAGTT+AGG - chr7.3:31390141-31390160 None:intergenic 30.0%
! CTAGAAATGACCTTTTTACA+AGG + chr7.3:31391269-31391288 MS.gene036949:intron 30.0%
! GAAAATGAAAATCTAGCTCA+TGG + chr7.3:31389682-31389701 MS.gene036949:CDS 30.0%
! GGTGATATTGATAATACTGA+TGG + chr7.3:31389784-31389803 MS.gene036949:CDS 30.0%
! TAGATATAATGGGAGAGTTA+GGG - chr7.3:31390140-31390159 None:intergenic 30.0%
! TGTATGATGATGTCCTTAAT+TGG + chr7.3:31391989-31392008 MS.gene036949:CDS 30.0%
!! ATAGTTGATGAGTTGTTAAG+AGG + chr7.3:31389718-31389737 MS.gene036949:CDS 30.0%
!! ATTTGCTGAAGATCTTTTGA+AGG + chr7.3:31389819-31389838 MS.gene036949:CDS 30.0%
!! TTTTTCAAACACACTGCTTA+GGG + chr7.3:31390107-31390126 MS.gene036949:intron 30.0%
!!! TTTTTTCAAACACACTGCTT+AGG + chr7.3:31390106-31390125 MS.gene036949:intron 30.0%
AACAATAACCCTACTTCTGA+GGG + chr7.3:31389880-31389899 MS.gene036949:CDS 35.0%
AATTTCACAAACATGGGAGA+AGG + chr7.3:31390743-31390762 MS.gene036949:CDS 35.0%
CAATAGGGAATTAGTAAAGG+TGG - chr7.3:31389854-31389873 None:intergenic 35.0%
CACACACACATATCATTTCT+TGG + chr7.3:31390651-31390670 MS.gene036949:intron 35.0%
CCTTGTAAAAAAGGTTTGTG+CGG - chr7.3:31390870-31390889 None:intergenic 35.0%
GATAATCCACCATGATTTCA+GGG - chr7.3:31391753-31391772 None:intergenic 35.0%
GCAAGATTCTACAAGTATGA+TGG - chr7.3:31391726-31391745 None:intergenic 35.0%
GTGGATCTTCTTGAATTCTT+TGG - chr7.3:31391678-31391697 None:intergenic 35.0%
TAACCTTTGACCTAAATCAC+TGG - chr7.3:31391468-31391487 None:intergenic 35.0%
TATCAGAAATATGGACACCT+AGG - chr7.3:31391966-31391985 None:intergenic 35.0%
TGAACTGAAAGAGTTTCTGA+TGG + chr7.3:31391490-31391509 MS.gene036949:intron 35.0%
TTCCAAAGAGTCTTCAGATT+TGG - chr7.3:31389923-31389942 None:intergenic 35.0%
TTGCAAGAGTTCCATTGTTA+AGG + chr7.3:31389948-31389967 MS.gene036949:CDS 35.0%
TTGTTAGTTATGGTTTGAGC+TGG + chr7.3:31390587-31390606 MS.gene036949:intron 35.0%
! AATGAAAATCTAGCTCATGG+TGG + chr7.3:31389685-31389704 MS.gene036949:CDS 35.0%
! TCCTTTTCTCTCAGTGAAAA+AGG + chr7.3:31391840-31391859 MS.gene036949:CDS 35.0%
! TTTTCTCTCAGTGAAAAAGG+AGG + chr7.3:31391843-31391862 MS.gene036949:CDS 35.0%
!! CACTTTTGATGATCCAGAAA+AGG + chr7.3:31391903-31391922 MS.gene036949:CDS 35.0%
!! TAAGTTGGTTTGCAAGTTGA+TGG - chr7.3:31389744-31389763 None:intergenic 35.0%
!! TCCTTTTTCACTGAGAGAAA+AGG - chr7.3:31391844-31391863 None:intergenic 35.0%
!!! CGCACAAACCTTTTTTACAA+GGG + chr7.3:31390868-31390887 MS.gene036949:intron 35.0%
!!! CGGTGTGCAAAATCTTTTTT+TGG - chr7.3:31390815-31390834 None:intergenic 35.0%
AAGAAACACGGAAGAGTGAT+CGG - chr7.3:31391779-31391798 None:intergenic 40.0%
ACAAGTATGATGGCCAGAAT+AGG - chr7.3:31391716-31391735 None:intergenic 40.0%
CACCAAATCTGAAGACTCTT+TGG + chr7.3:31389918-31389937 MS.gene036949:CDS 40.0%
CTTCACAAGACAACCTATTC+TGG + chr7.3:31391700-31391719 MS.gene036949:CDS 40.0%
CTTGATTCTCATGATCACCT+AGG + chr7.3:31391946-31391965 MS.gene036949:CDS 40.0%
CTTGCAAAACCCTGAAATCA+TGG + chr7.3:31391741-31391760 MS.gene036949:CDS 40.0%
GAACAATAACCCTACTTCTG+AGG + chr7.3:31389879-31389898 MS.gene036949:CDS 40.0%
GAAGAGGCTGTTACAAAAGA+AGG + chr7.3:31389974-31389993 MS.gene036949:CDS 40.0%
GAATAGGTTGTCTTGTGAAG+AGG - chr7.3:31391700-31391719 None:intergenic 40.0%
GATATTGTTCATCCACTCTC+TGG + chr7.3:31391877-31391896 MS.gene036949:CDS 40.0%
GGATAATCCACCATGATTTC+AGG - chr7.3:31391754-31391773 None:intergenic 40.0%
TCCATTGTTAAGGAACGAAG+AGG + chr7.3:31389958-31389977 MS.gene036949:CDS 40.0%
TGCACTCACAAACATGATCA+AGG + chr7.3:31391631-31391650 MS.gene036949:CDS 40.0%
TGCTTTGCAGAAACTACTAC+AGG + chr7.3:31391608-31391627 MS.gene036949:intron 40.0%
TTGAGTAGGTCCAGTGATTT+AGG + chr7.3:31391455-31391474 MS.gene036949:intron 40.0%
! GATAGTGTGACATCCTTTTC+TGG - chr7.3:31391919-31391938 None:intergenic 40.0%
!! GAGAAAAGGACAGTCTTGTT+TGG - chr7.3:31391830-31391849 None:intergenic 40.0%
!!! CCGCACAAACCTTTTTTACA+AGG + chr7.3:31390867-31390886 MS.gene036949:intron 40.0%
!!! TTTTGCACACCGATTTTCCA+AGG + chr7.3:31390823-31390842 MS.gene036949:CDS 40.0%
AAATCAGAGCCCTCAGAAGT+AGG - chr7.3:31389892-31389911 None:intergenic 45.0%
AATCAGAGCCCTCAGAAGTA+GGG - chr7.3:31389891-31389910 None:intergenic 45.0%
CTAGCATCTTAGGGTTGAGT+AGG + chr7.3:31391441-31391460 MS.gene036949:intron 45.0%
GCAAAACCCTGAAATCATGG+TGG + chr7.3:31391744-31391763 MS.gene036949:CDS 45.0%
GCCTCTTCGTTCCTTAACAA+TGG - chr7.3:31389962-31389981 None:intergenic 45.0%
GGTCATCAGTGGAGAAAGTA+TGG + chr7.3:31390789-31390808 MS.gene036949:CDS 45.0%
GGTCCAGTGATTTAGGTCAA+AGG + chr7.3:31391462-31391481 MS.gene036949:intron 45.0%
TAGGTTGTCTTGTGAAGAGG+TGG - chr7.3:31391697-31391716 None:intergenic 45.0%
TCAAAAGTGAGTCCAGAGAG+TGG - chr7.3:31391892-31391911 None:intergenic 45.0%
! AGTGAAAAAGGAGGAGTGCA+AGG + chr7.3:31391852-31391871 MS.gene036949:CDS 45.0%
!! AAAGGACAGTCTTGTTTGGC+TGG - chr7.3:31391826-31391845 None:intergenic 45.0%
!! AGTCTTGTTTGGCTGGTGTT+GGG - chr7.3:31391819-31391838 None:intergenic 45.0%
!! ATAATTTAAAAAAAAAATTC+AGG + chr7.3:31391203-31391222 MS.gene036949:intron 5.0%
!!! TTTAAGAAAATATTTTATTT+TGG + chr7.3:31390246-31390265 MS.gene036949:intron 5.0%
AACACGGAAGAGTGATCGGT+AGG - chr7.3:31391775-31391794 None:intergenic 50.0%
CACTGATGACCATCTTCCTC+AGG - chr7.3:31390780-31390799 None:intergenic 50.0%
CTGAGGAAGATGGTCATCAG+TGG + chr7.3:31390778-31390797 MS.gene036949:CDS 50.0%
! AATCTAGCTCATGGTGGTCG+TGG + chr7.3:31389691-31389710 MS.gene036949:CDS 50.0%
!! CAGTCTTGTTTGGCTGGTGT+TGG - chr7.3:31391820-31391839 None:intergenic 50.0%
TCTGAGCTGCCTGAGGAAGA+TGG + chr7.3:31390768-31390787 MS.gene036949:CDS 55.0%
GAAGGAGTCTGAGCTGCCTG+AGG + chr7.3:31390761-31390780 MS.gene036949:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 31389679 31392023 31389679 ID=MS.gene036949
chr7.3 mRNA 31389679 31392023 31389679 ID=MS.gene036949.t1;Parent=MS.gene036949
chr7.3 exon 31389679 31389995 31389679 ID=MS.gene036949.t1.exon1;Parent=MS.gene036949.t1
chr7.3 CDS 31389679 31389995 31389679 ID=cds.MS.gene036949.t1;Parent=MS.gene036949.t1
chr7.3 exon 31390740 31390844 31390740 ID=MS.gene036949.t1.exon2;Parent=MS.gene036949.t1
chr7.3 CDS 31390740 31390844 31390740 ID=cds.MS.gene036949.t1;Parent=MS.gene036949.t1
chr7.3 exon 31391618 31392023 31391618 ID=MS.gene036949.t1.exon3;Parent=MS.gene036949.t1
chr7.3 CDS 31391618 31392023 31391618 ID=cds.MS.gene036949.t1;Parent=MS.gene036949.t1
Gene Sequence

>MS.gene036949

ATGGAAAATGAAAATCTAGCTCATGGTGGTCGTGGAAAGATAGTTGATGAGTTGTTAAGAGGCCATCAACTTGCAAACCAACTTAGAAATATTCTTAATGAAAGTGGTGATATTGATAATACTGATGGATCAACAATACCATTTGCTGAAGATCTTTTGAAGGAAGTGCTTACCACCTTTACTAATTCCCTATTGTTCTTGAACAATAACCCTACTTCTGAGGGCTCTGATTTGCAACTCACCAAATCTGAAGACTCTTTGGAAAGTAATTGCAAGAGTTCCATTGTTAAGGAACGAAGAGGCTGTTACAAAAGAAGGTAATTATTATTACTTAGTAATTTTTCTTATATTTCTTATTGTTTTATAAATCTTTGCATATGTGTGCGCATCTGAGATCCATTTAAGAGTCGACTTCTTTTAACATATATTTTTTCAAACACACTGCTTAGGGATTGAATCCCTAACTCTCCCATTATATCTATATCCACATTTCTACATCTACAATTTGTACATGATTTACTATATAGTTTTGTTTAGGAATATAGTGCTTTTTTCCTTCTTTTTTTTTTTAAGAAAATATTTTATTTTGGCTGATATATTTTTTTCCTCTTATTTATTGACTAATGTAATTTCACTTATATTTGAACTTTTGGATGAGGTAATGTATGCTTTGTTATTTAATTTGATTACAGACTATTAGCCAATTAATACTTTTGTTGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTGGTGACCATACTTTTGTTATTGTTTGTCTTTTACATATGAGTAATATTGGACCCCATCAATTATTGTTCATCATCATTGAAGGACTATGTTATATAATTAGGAACGTCCTCTTTATTAATTTGCTCGTTTCTAAAGTTTGTTAGTTATGGTTTGAGCTGGCACAGTAAAATTATTTGATTATATATATGTGTCTACACACACACACACACATATCATTTCTTGGTTGAGTTTTTTTTTTTTGTTACAATTGGAAAACTTATCAGAAAATATATACAATTCTTGTTTACAGGAAAATTTCACAAACATGGGAGAAGGAGTCTGAGCTGCCTGAGGAAGATGGTCATCAGTGGAGAAAGTATGGCCAAAAAAAGATTTTGCACACCGATTTTCCAAGGTATATTTATACGACACATTAACCGCACAAACCTTTTTTACAAGGGAGTTTCTACTACACACTTGTAAATTGATGTGTATCGATGCACTTGTTTCCTAATTCAATAAATTAACTAACATTTTTATTAATTAAAAAAGTTATTTGTCGATTTTATATTTTAGAAAACACTATTTCATAAGAAAAAAAATATCATTTCATTGTTTATTAAGAATCATACTGAATATTTTACATTTTATAGCAAAAATAAATAAATCAGTATTCACTATTATGAGTAATAAATATTTAAAACAATAAAATTTTATTTCATTGAAACCTTTAATAAATAAGATTTAGTTATTATAATTGTAAATGATAGAAAATAATTTAAAAAAAAAATTCAGGTATTAATTTAAGGACTCAATGCACTCGAATTTTCAAGTGTAAACTAGAAATGACCTTTTTACAAGGTCATTCAATTAAATTTCACTATTTGTACAAATTGTCCGGTTAATTAATTTTCAAAACAATTAATCTAAATTATCATTAACTGTTGAGATTTGACTTGGTTTAATTTATGTATGTCTCTTATATCTGTTTATATGAAATTTATTTATTAGCTAGCATCTTAGGGTTGAGTAGGTCCAGTGATTTAGGTCAAAGGTTAATTGAACTGAAAGAGTTTCTGATGGATAAATAGACATGACAACTAATTACAATTTGTTAATACAAACTAAGATCCTCTACTTCTTACTAATCAATATCACTAAATGAATATGTACTTATGTGCTTTGCAGAAACTACTACAGGTGCACTCACAAACATGATCAAGGTTGCAAAGCAACAAAACAAGTCCAAAGAATTCAAGAAGATCCACCTCTTCACAAGACAACCTATTCTGGCCATCATACTTGTAGAATCTTGCAAAACCCTGAAATCATGGTGGATTATCCTACCGATCACTCTTCCGTGTTTCTTAGTTTTGACAACTCTTTCCCAACACCAGCCAAACAAGACTGTCCTTTTCTCTCAGTGAAAAAGGAGGAGTGCAAGGAAGATATTGTTCATCCACTCTCTGGACTCACTTTTGATGATCCAGAAAAGGATGTCACACTATCATCAACACTTGATTCTCATGATCACCTAGGTGTCCATATTTCTGATATCATGTATGATGATGTCCTTAATTGGCCTCTTTCTTAA
Protein sequence

>MS.gene036949.t1

MENENLAHGGRGKIVDELLRGHQLANQLRNILNESGDIDNTDGSTIPFAEDLLKEVLTTFTNSLLFLNNNPTSEGSDLQLTKSEDSLESNCKSSIVKERRGCYKRRKISQTWEKESELPEEDGHQWRKYGQKKILHTDFPRNYYRCTHKHDQGCKATKQVQRIQEDPPLHKTTYSGHHTCRILQNPEIMVDYPTDHSSVFLSFDNSFPTPAKQDCPFLSVKKEECKEDIVHPLSGLTFDDPEKDVTLSSTLDSHDHLGVHISDIMYDDVLNWPLS