AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036950.t1 MTR_7g073380 91.156 294 15 2 1 283 1 294 0.0 548
MS.gene036950.t1 MTR_7g073430 87.719 285 31 4 1 283 1 283 0.0 506
MS.gene036950.t1 MTR_0002s1250 40.458 262 131 6 13 264 5 251 1.99e-60 192
MS.gene036950.t1 MTR_8g005750 48.077 208 94 5 14 220 4 198 1.97e-57 186
MS.gene036950.t1 MTR_8g032510 46.009 213 105 5 14 220 7 215 1.57e-56 183
MS.gene036950.t1 MTR_2g075690 39.683 252 118 8 11 231 12 260 6.76e-49 164
MS.gene036950.t1 MTR_2g075700 41.152 243 115 5 17 231 17 259 1.15e-44 154
MS.gene036950.t1 MTR_2g075680 37.838 259 123 6 11 233 12 268 8.48e-42 146
MS.gene036950.t1 MTR_5g067700 39.407 236 108 12 5 238 4 206 2.89e-39 137
MS.gene036950.t1 MTR_3g093830 41.530 183 86 6 21 191 23 196 4.81e-38 136
MS.gene036950.t1 MTR_2g075750 55.446 101 44 1 108 207 13 113 4.83e-35 125
MS.gene036950.t1 MTR_2g075610 54.369 103 46 1 108 209 14 116 6.35e-34 122
MS.gene036950.t1 MTR_7g117200 31.980 197 106 4 12 195 9 190 1.38e-26 106
MS.gene036950.t1 MTR_3g090860 33.503 197 95 5 15 184 7 194 1.75e-26 106
MS.gene036950.t1 MTR_8g027860 51.765 85 33 1 106 182 111 195 4.20e-23 97.4
MS.gene036950.t1 MTR_8g099350 31.863 204 104 7 1 182 1 191 4.51e-21 92.0
MS.gene036950.t1 MTR_5g067680 38.889 108 61 1 75 182 159 261 6.00e-18 83.2
MS.gene036950.t1 MTR_5g073620 46.875 64 34 0 121 184 670 733 1.87e-14 73.9
MS.gene036950.t1 MTR_7g028415 51.667 60 26 1 122 181 92 148 1.92e-14 70.1
MS.gene036950.t1 MTR_7g028710 51.667 60 26 1 122 181 92 148 1.92e-14 70.1
MS.gene036950.t1 MTR_8g092140 40.964 83 39 3 98 180 142 214 3.22e-13 68.2
MS.gene036950.t1 MTR_8g096730 35.088 114 68 3 76 189 26 133 4.50e-13 65.9
MS.gene036950.t1 MTR_7g110720 35.345 116 72 2 66 180 158 271 1.73e-12 67.4
MS.gene036950.t1 MTR_3g095080 41.176 85 37 3 98 181 151 223 2.27e-12 65.9
MS.gene036950.t1 MTR_7g079010 43.077 65 34 1 116 180 134 195 4.11e-12 64.7
MS.gene036950.t1 MTR_3g095080 41.176 85 37 3 98 181 127 199 4.24e-12 64.7
MS.gene036950.t1 MTR_1g086790 46.667 60 29 1 122 181 157 213 4.34e-12 65.9
MS.gene036950.t1 MTR_5g043880 47.458 59 28 1 122 180 123 178 5.01e-12 65.1
MS.gene036950.t1 MTR_2g088000 34.579 107 67 2 98 204 325 428 5.29e-12 66.2
MS.gene036950.t1 MTR_8g007270 33.813 139 62 6 73 205 113 227 5.30e-12 64.3
MS.gene036950.t1 MTR_7g109800 46.667 60 29 1 122 181 144 200 1.26e-11 64.3
MS.gene036950.t1 MTR_3g053330 36.364 99 60 2 106 204 235 330 1.64e-11 64.7
MS.gene036950.t1 MTR_4g094588 47.458 59 28 1 122 180 177 232 3.61e-11 63.2
MS.gene036950.t1 MTR_5g091390 45.763 59 29 1 122 180 156 211 3.71e-11 62.8
MS.gene036950.t1 MTR_8g028565 39.744 78 43 2 106 181 136 211 4.96e-11 62.8
MS.gene036950.t1 MTR_4g122530 37.838 74 42 2 108 180 192 262 9.92e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036950.t1 AT3G56400 41.758 182 81 5 14 182 10 179 3.28e-37 134
MS.gene036950.t1 AT2G40750 37.500 200 92 8 14 182 14 211 7.96e-28 110
MS.gene036950.t1 AT1G66550 34.158 202 112 7 14 212 8 191 1.25e-26 105
MS.gene036950.t1 AT2G46400 34.239 184 91 5 15 189 8 170 5.93e-26 104
MS.gene036950.t1 AT5G01900 34.392 189 96 5 10 187 3 174 3.87e-25 101
MS.gene036950.t1 AT1G66550 33.333 201 110 7 14 212 8 186 4.65e-25 100
MS.gene036950.t1 AT5G22570 32.432 185 103 5 14 191 9 178 4.47e-24 99.0
MS.gene036950.t1 AT4G11070 31.959 194 108 4 12 182 8 200 8.21e-23 95.9
MS.gene036950.t1 AT1G66560 33.721 172 98 5 15 185 9 165 5.29e-22 92.4
MS.gene036950.t1 AT1G66600 33.523 176 95 5 14 185 8 165 2.82e-21 90.5
MS.gene036950.t1 AT5G24110 33.333 180 83 4 16 182 17 172 1.57e-20 89.7
MS.gene036950.t1 AT2G40740 30.244 205 115 5 16 195 44 245 5.24e-20 87.8
MS.gene036950.t1 AT2G40740 30.244 205 115 5 16 195 53 254 6.83e-20 87.8
MS.gene036950.t1 AT4G11070 32.948 173 102 3 12 182 8 168 3.80e-19 85.5
MS.gene036950.t1 AT1G80590 36.522 115 65 2 124 233 86 197 6.17e-18 81.3
MS.gene036950.t1 AT4G23810 45.882 85 38 1 106 182 133 217 1.38e-17 81.6
MS.gene036950.t1 AT1G69310 37.097 124 71 4 69 188 89 209 1.41e-14 72.8
MS.gene036950.t1 AT1G69310 37.097 124 71 4 69 188 89 209 1.41e-14 72.8
MS.gene036950.t1 AT1G69310 37.097 124 71 4 69 188 89 209 1.41e-14 72.8
MS.gene036950.t1 AT5G45260 52.632 57 27 0 124 180 1209 1265 2.25e-13 70.9
MS.gene036950.t1 AT5G13080 45.070 71 36 1 122 192 66 133 1.21e-12 64.7
MS.gene036950.t1 AT5G41570 40.964 83 44 2 98 180 75 152 1.30e-12 65.5
MS.gene036950.t1 AT2G37260 45.833 72 35 2 117 188 344 411 2.01e-12 67.4
MS.gene036950.t1 AT2G37260 45.833 72 35 2 117 188 264 331 2.61e-12 66.6
MS.gene036950.t1 AT2G37260 45.833 72 35 2 117 188 262 329 2.71e-12 66.6
MS.gene036950.t1 AT5G49520 41.791 67 36 1 122 188 220 283 3.87e-12 66.2
MS.gene036950.t1 AT2G46130 45.763 59 29 1 122 180 29 84 4.71e-12 62.0
MS.gene036950.t1 AT1G64000 43.077 65 34 1 116 180 107 168 6.14e-12 63.9
MS.gene036950.t1 AT3G01970 38.202 89 44 2 122 210 64 141 8.01e-12 62.4
MS.gene036950.t1 AT4G04450 33.929 112 71 2 94 204 168 277 1.73e-11 64.7
MS.gene036950.t1 AT2G47260 46.667 60 29 1 122 181 173 229 1.99e-11 63.9
MS.gene036950.t1 AT4G04450 33.929 112 71 2 94 204 262 371 2.44e-11 64.3
MS.gene036950.t1 AT4G39410 38.542 96 44 4 93 188 201 281 2.45e-11 63.5
MS.gene036950.t1 AT2G44745 41.667 84 42 3 98 180 122 199 2.90e-11 62.4
MS.gene036950.t1 AT4G18170 36.538 104 54 4 80 180 132 226 3.28e-11 63.2
MS.gene036950.t1 AT1G62300 44.595 74 38 2 108 180 296 367 4.46e-11 63.5
MS.gene036950.t1 AT1G29860 44.444 63 32 1 122 184 135 194 5.48e-11 62.4

Find 57 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATTGATGAATTGTTAAA+AGG 0.184934 7.3:+31397444 MS.gene036950:CDS
TTCAAGAAAGTGGCCAATTA+AGG 0.251647 7.3:-31399547 None:intergenic
GGTGATATTGATAACATTAA+TGG 0.251913 7.3:+31397510 MS.gene036950:CDS
TCCATTTCTCTCAGTGAAAA+AGG 0.266907 7.3:+31399367 MS.gene036950:CDS
TGCTTTGCAGGAACTATTAC+AGG 0.282092 7.3:+31399135 MS.gene036950:intron
GATTATTGTTCAAGAACAAT+AGG 0.331883 7.3:-31397593 None:intergenic
CAAGAGTACTTCCATTGTTA+AGG 0.344618 7.3:+31397677 MS.gene036950:CDS
CTTTACAAAACAACCTACTA+TGG 0.350539 7.3:+31399227 MS.gene036950:CDS
TGTATGATGATGTCCTTAAT+TGG 0.353206 7.3:+31399534 MS.gene036950:CDS
ACATCATCATACATGATATC+AGG 0.372411 7.3:-31399524 None:intergenic
TTTAAAAGATCTTCAGCAAC+TGG 0.373083 7.3:-31397543 None:intergenic
ATAAATATACCTTGGGAAAT+CGG 0.385972 7.3:-31398714 None:intergenic
CTCTAAAGAATCCTCAGATT+TGG 0.392364 7.3:-31397646 None:intergenic
TCTAATTAATTTCAAGAAAG+TGG 0.395509 7.3:-31399557 None:intergenic
GGTCATCAATGGAGAAAGTA+TGG 0.401550 7.3:+31398671 MS.gene036950:CDS
CTTGATTCTCATGATCAGTT+AGG 0.404590 7.3:+31399491 MS.gene036950:CDS
GGAGAATCCTCTATGATCTC+AGG 0.407384 7.3:-31399278 None:intergenic
CAGTCTTGTTTGGCTGGTGT+TGG 0.412342 7.3:-31399344 None:intergenic
ATTATTGTTCAAGAACAATA+GGG 0.414455 7.3:-31397592 None:intergenic
CCTTCAAATGATTACCTCTC+TGG 0.419974 7.3:+31399422 MS.gene036950:CDS
GAGAAATGGACAGTCTTGTT+TGG 0.445787 7.3:-31399354 None:intergenic
AGTCTTGTTTGGCTGGTGTT+GGG 0.452762 7.3:-31399343 None:intergenic
AGGTAATCATTTGAAGGAGG+AGG 0.457187 7.3:-31399416 None:intergenic
CCAGAGAGGTAATCATTTGA+AGG 0.470477 7.3:-31399422 None:intergenic
TGATTGATGAATTGTTAAAA+GGG 0.474553 7.3:+31397445 MS.gene036950:CDS
CAGAAAAGTTTCACAAACAT+GGG 0.477292 7.3:+31398619 MS.gene036950:intron
AATGGACAGTCTTGTTTGGC+TGG 0.477532 7.3:-31399350 None:intergenic
AGAAATATTCTGAATGAAAG+TGG 0.485810 7.3:+31397489 MS.gene036950:CDS
TCAGAAAAGTTTCACAAACA+TGG 0.494934 7.3:+31398618 MS.gene036950:intron
CTAGCTCATGGTAGTGGTCG+TGG 0.509082 7.3:+31397417 MS.gene036950:CDS
ACAAGTGTGATGGCCATAGT+AGG 0.510474 7.3:-31399240 None:intergenic
AACAATAATCCTACTTCTGA+GGG 0.511593 7.3:+31397606 MS.gene036950:CDS
TCTGATCGTCCCGTGGAAGA+TGG 0.520055 7.3:+31398650 MS.gene036950:CDS
GAAAATCTAGCTCATGGTAG+TGG 0.526481 7.3:+31397411 MS.gene036950:CDS
CCGTGGAAGATGGTCATCAA+TGG 0.528577 7.3:+31398660 MS.gene036950:CDS
AGCTAAGGAACATGGAAGAC+TGG 0.529377 7.3:-31399307 None:intergenic
GTAGAGGCTGTTACAAAAGA+AGG 0.531049 7.3:+31397703 MS.gene036950:CDS
GTTGTCAAAGCTAAGGAACA+TGG 0.540400 7.3:-31399315 None:intergenic
AAATCAGAGCCCTCAGAAGT+AGG 0.544337 7.3:-31397615 None:intergenic
GAACAATAATCCTACTTCTG+AGG 0.546015 7.3:+31397605 MS.gene036950:CDS
GGAAAGAGTTGTCAAAGCTA+AGG 0.561012 7.3:-31399322 None:intergenic
TGCACTCACAAACATGATCA+AGG 0.563442 7.3:+31399158 MS.gene036950:CDS
GAGAATCCTCTATGATCTCA+GGG 0.568526 7.3:-31399277 None:intergenic
CCATTGATGACCATCTTCCA+CGG 0.575191 7.3:-31398660 None:intergenic
GCAAGATTCTACAAGTGTGA+TGG 0.576779 7.3:-31399250 None:intergenic
GCCTCTACGTTCCTTAACAA+TGG 0.594370 7.3:-31397688 None:intergenic
AGTTTCACAAACATGGGAGA+AGG 0.598123 7.3:+31398625 MS.gene036950:CDS
ACAAGTGCAACAAATTCAAG+AGG 0.601952 7.3:+31399196 MS.gene036950:CDS
AACATGGAAGACTGGTCACA+AGG 0.611016 7.3:-31399299 None:intergenic
CATTGATGACCATCTTCCAC+GGG 0.612085 7.3:-31398659 None:intergenic
TTTGCAACTCACCAAATCTG+AGG 0.616026 7.3:+31397635 MS.gene036950:CDS
GCAAAGCCCTGAGATCATAG+AGG 0.632964 7.3:+31399271 MS.gene036950:CDS
TCTTGCACACCGATTTCCCA+AGG 0.637507 7.3:+31398705 MS.gene036950:CDS
GAGAGGTAATCATTTGAAGG+AGG 0.645608 7.3:-31399419 None:intergenic
TCCATTGTTAAGGAACGTAG+AGG 0.656442 7.3:+31397687 MS.gene036950:CDS
GAAGGAGTCTGATCGTCCCG+TGG 0.657169 7.3:+31398643 MS.gene036950:CDS
CATCAAAAGTGAGTCCAGAG+AGG 0.707648 7.3:-31399436 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAATAAATAAAAATGAG+AGG - chr7.3:31398434-31398453 None:intergenic 15.0%
!! CAAAATAAATAAAAATGAGA+GGG - chr7.3:31398433-31398452 None:intergenic 15.0%
!! TTAATTTCTTTACATCTTAA+AGG + chr7.3:31398923-31398942 MS.gene036950:intron 15.0%
!!! TTTTGATAAGAGAAAATTAT+TGG - chr7.3:31398232-31398251 None:intergenic 15.0%
!! ATAGTGAAATTTGATTGTAT+TGG - chr7.3:31398786-31398805 None:intergenic 20.0%
!! ATATAGAATTATAGATGTGT+TGG - chr7.3:31397857-31397876 None:intergenic 20.0%
!! ATATTACTCATATGTTGTAA+AGG - chr7.3:31398152-31398171 None:intergenic 20.0%
!! ATGATGAACAATAATTGATA+GGG - chr7.3:31398360-31398379 None:intergenic 20.0%
!! ATTATTGTTCAAGAACAATA+GGG - chr7.3:31397595-31397614 None:intergenic 20.0%
!! TACAACATATGAGTAATATT+GGG + chr7.3:31398153-31398172 MS.gene036950:intron 20.0%
!! TATAGAATTATAGATGTGTT+GGG - chr7.3:31397856-31397875 None:intergenic 20.0%
!! TATTAAGAAAGAAGAATTAG+AGG - chr7.3:31399077-31399096 None:intergenic 20.0%
!! TGAAAAAGAATTGCATAATT+GGG - chr7.3:31398601-31398620 None:intergenic 20.0%
!! TGATTGATGAATTGTTAAAA+GGG + chr7.3:31397445-31397464 MS.gene036950:CDS 20.0%
!! TTACAACATATGAGTAATAT+TGG + chr7.3:31398152-31398171 MS.gene036950:intron 20.0%
!!! AATTTTAGATGTATGAAAAG+TGG - chr7.3:31397880-31397899 None:intergenic 20.0%
!!! ATAAGAGAAAATTATTGGTT+AGG - chr7.3:31398227-31398246 None:intergenic 20.0%
!!! TAAAATGTTAAATGAGTTGA+AGG + chr7.3:31398997-31399016 MS.gene036950:intron 20.0%
!!! TTATTTGAACTTTTAAGATG+AGG + chr7.3:31398072-31398091 MS.gene036950:intron 20.0%
!!! TTTGTTGTGTTTTTTTTTTG+TGG + chr7.3:31398449-31398468 MS.gene036950:intron 20.0%
!!! TTTTCCTTTTTTTTCTTCTT+CGG + chr7.3:31397962-31397981 MS.gene036950:intron 20.0%
! AAACTCGTATAAATATACCT+TGG - chr7.3:31398725-31398744 None:intergenic 25.0%
! AACTCGTATAAATATACCTT+GGG - chr7.3:31398724-31398743 None:intergenic 25.0%
! ACAACATATGAGTAATATTG+GGG + chr7.3:31398154-31398173 MS.gene036950:intron 25.0%
! AGAAATATTCTGAATGAAAG+TGG + chr7.3:31397489-31397508 MS.gene036950:CDS 25.0%
! AGTAAAAAGAGTTGAATATG+TGG - chr7.3:31397762-31397781 None:intergenic 25.0%
! ATAAATATACCTTGGGAAAT+CGG - chr7.3:31398717-31398736 None:intergenic 25.0%
! CTGAAAAAGAATTGCATAAT+TGG - chr7.3:31398602-31398621 None:intergenic 25.0%
! GAAAAACCATAGGTTAAAAT+AGG - chr7.3:31397810-31397829 None:intergenic 25.0%
! GACAATCTTAAAAGTAAACT+GGG - chr7.3:31398761-31398780 None:intergenic 25.0%
! GATGATGAACAATAATTGAT+AGG - chr7.3:31398361-31398380 None:intergenic 25.0%
! GATTATTGTTCAAGAACAAT+AGG - chr7.3:31397596-31397615 None:intergenic 25.0%
! GTGATTGATGAATTGTTAAA+AGG + chr7.3:31397444-31397463 MS.gene036950:CDS 25.0%
! TGAATATTTATATGCTTTGC+AGG + chr7.3:31399123-31399142 MS.gene036950:intron 25.0%
! TGACAATCTTAAAAGTAAAC+TGG - chr7.3:31398762-31398781 None:intergenic 25.0%
!! AAAAATGAAAATCTAGCTCA+TGG + chr7.3:31397405-31397424 MS.gene036950:CDS 25.0%
!! GGTGATATTGATAACATTAA+TGG + chr7.3:31397510-31397529 MS.gene036950:CDS 25.0%
!! TTTCATAGTCTTACATTGAT+TGG + chr7.3:31398541-31398560 MS.gene036950:intron 25.0%
!! TTTTTCATACACACTATTCA+TGG + chr7.3:31397824-31397843 MS.gene036950:intron 25.0%
!!! GATTGGTTTTGAGTTTTTTT+TGG + chr7.3:31398558-31398577 MS.gene036950:intron 25.0%
AACAATAATCCTACTTCTGA+GGG + chr7.3:31397606-31397625 MS.gene036950:CDS 30.0%
AATTGATAGGGTCCAATATT+AGG - chr7.3:31398348-31398367 None:intergenic 30.0%
ACATCATCATACATGATATC+AGG - chr7.3:31399527-31399546 None:intergenic 30.0%
ATTGATAGGGTCCAATATTA+GGG - chr7.3:31398347-31398366 None:intergenic 30.0%
CAGAAAAGTTTCACAAACAT+GGG + chr7.3:31398619-31398638 MS.gene036950:intron 30.0%
CTTTACAAAACAACCTACTA+TGG + chr7.3:31399227-31399246 MS.gene036950:CDS 30.0%
CTTTCCGAAGAAGAAAAAAA+AGG - chr7.3:31397969-31397988 None:intergenic 30.0%
TAGTGTGTATGAAAAACCAT+AGG - chr7.3:31397820-31397839 None:intergenic 30.0%
TCAGAAAAGTTTCACAAACA+TGG + chr7.3:31398618-31398637 MS.gene036950:intron 30.0%
TTTAAAAGATCTTCAGCAAC+TGG - chr7.3:31397546-31397565 None:intergenic 30.0%
! AGTTGCTGAAGATCTTTTAA+AGG + chr7.3:31397545-31397564 MS.gene036950:CDS 30.0%
! GTTGTTTCCTCTAGTTATTA+TGG + chr7.3:31398487-31398506 MS.gene036950:intron 30.0%
! TCCTCTAGTTATTATGGTTT+TGG + chr7.3:31398493-31398512 MS.gene036950:intron 30.0%
! TGTATGATGATGTCCTTAAT+TGG + chr7.3:31399534-31399553 MS.gene036950:CDS 30.0%
!! GTGACTTTAGTGTATTTTAG+AGG - chr7.3:31398290-31398309 None:intergenic 30.0%
!! TAGTAGGTTGTTTTGTAAAG+AGG - chr7.3:31399227-31399246 None:intergenic 30.0%
!!! AGTTGACCTATTTTAACCTA+TGG + chr7.3:31397801-31397820 MS.gene036950:intron 30.0%
ACAAGTGCAACAAATTCAAG+AGG + chr7.3:31399196-31399215 MS.gene036950:CDS 35.0%
ACATATGAGTAATATTGGGG+TGG + chr7.3:31398157-31398176 MS.gene036950:intron 35.0%
ATATGAGTAATATTGGGGTG+GGG + chr7.3:31398159-31398178 MS.gene036950:intron 35.0%
ATTTCTCTCAGTGAAAAAGG+AGG + chr7.3:31399370-31399389 MS.gene036950:CDS 35.0%
CATATGAGTAATATTGGGGT+GGG + chr7.3:31398158-31398177 MS.gene036950:intron 35.0%
CTTGATTCTCATGATCAGTT+AGG + chr7.3:31399491-31399510 MS.gene036950:CDS 35.0%
GAACAATAATCCTACTTCTG+AGG + chr7.3:31397605-31397624 MS.gene036950:CDS 35.0%
GCCAAAACCATAATAACTAG+AGG - chr7.3:31398497-31398516 None:intergenic 35.0%
TATCCACTACATGTGATGAA+AGG + chr7.3:31398391-31398410 MS.gene036950:intron 35.0%
TCCATTTCTCTCAGTGAAAA+AGG + chr7.3:31399367-31399386 MS.gene036950:CDS 35.0%
! CTCTAAAGAATCCTCAGATT+TGG - chr7.3:31397649-31397668 None:intergenic 35.0%
!! AGTCGATCAACTGATTTGAA+AGG + chr7.3:31398950-31398969 MS.gene036950:intron 35.0%
!! CAAGAGTACTTCCATTGTTA+AGG + chr7.3:31397677-31397696 MS.gene036950:CDS 35.0%
!! CACTTTTGATGATCCAGAAA+AGG + chr7.3:31399448-31399467 MS.gene036950:CDS 35.0%
!! TAGGTTGTTTTGTAAAGAGG+TGG - chr7.3:31399224-31399243 None:intergenic 35.0%
!! TCCTTTTTCACTGAGAGAAA+TGG - chr7.3:31399371-31399390 None:intergenic 35.0%
AGGTAATCATTTGAAGGAGG+AGG - chr7.3:31399419-31399438 None:intergenic 40.0%
AGTCCTTTCATCACATGTAG+TGG - chr7.3:31398397-31398416 None:intergenic 40.0%
AGTGAAAAAGGAGGATTGCA+AGG + chr7.3:31399379-31399398 MS.gene036950:CDS 40.0%
AGTTTCACAAACATGGGAGA+AGG + chr7.3:31398625-31398644 MS.gene036950:CDS 40.0%
CCAGAGAGGTAATCATTTGA+AGG - chr7.3:31399425-31399444 None:intergenic 40.0%
CCTTCAAATGATTACCTCTC+TGG + chr7.3:31399422-31399441 MS.gene036950:CDS 40.0%
GAGAATCCTCTATGATCTCA+GGG - chr7.3:31399280-31399299 None:intergenic 40.0%
GAGAGGTAATCATTTGAAGG+AGG - chr7.3:31399422-31399441 None:intergenic 40.0%
GCAAGATTCTACAAGTGTGA+TGG - chr7.3:31399253-31399272 None:intergenic 40.0%
GGAAAGAGTTGTCAAAGCTA+AGG - chr7.3:31399325-31399344 None:intergenic 40.0%
GGTCATCAATGGAGAAAGTA+TGG + chr7.3:31398671-31398690 MS.gene036950:CDS 40.0%
GTAGAGGCTGTTACAAAAGA+AGG + chr7.3:31397703-31397722 MS.gene036950:CDS 40.0%
GTTGTCAAAGCTAAGGAACA+TGG - chr7.3:31399318-31399337 None:intergenic 40.0%
TAGGAGAGAGATAGAGACAA+AGG - chr7.3:31398208-31398227 None:intergenic 40.0%
TCCATTGTTAAGGAACGTAG+AGG + chr7.3:31397687-31397706 MS.gene036950:CDS 40.0%
TGCACTCACAAACATGATCA+AGG + chr7.3:31399158-31399177 MS.gene036950:CDS 40.0%
TGCTTTGCAGGAACTATTAC+AGG + chr7.3:31399135-31399154 MS.gene036950:intron 40.0%
TTTGCAACTCACCAAATCTG+AGG + chr7.3:31397635-31397654 MS.gene036950:CDS 40.0%
! GAAAATCTAGCTCATGGTAG+TGG + chr7.3:31397411-31397430 MS.gene036950:CDS 40.0%
! GATAGTGTGACATCCTTTTC+TGG - chr7.3:31399464-31399483 None:intergenic 40.0%
! GGCTTTAGTGACTTTGTGTT+GGG - chr7.3:31398321-31398340 None:intergenic 40.0%
!! GAGAAATGGACAGTCTTGTT+TGG - chr7.3:31399357-31399376 None:intergenic 40.0%
!!! CGGTGTGCAAGATCTTTTTT+TGG - chr7.3:31398697-31398716 None:intergenic 40.0%
AAATCAGAGCCCTCAGAAGT+AGG - chr7.3:31397618-31397637 None:intergenic 45.0%
ACAAGTGTGATGGCCATAGT+AGG - chr7.3:31399243-31399262 None:intergenic 45.0%
AGCTAAGGAACATGGAAGAC+TGG - chr7.3:31399310-31399329 None:intergenic 45.0%
ATAGGGTCCAATATTAGGGC+GGG - chr7.3:31398343-31398362 None:intergenic 45.0%
CATCAAAAGTGAGTCCAGAG+AGG - chr7.3:31399439-31399458 None:intergenic 45.0%
GACTTTGTGTTGGGTGACTT+TGG - chr7.3:31398312-31398331 None:intergenic 45.0%
GATAGGGTCCAATATTAGGG+CGG - chr7.3:31398344-31398363 None:intergenic 45.0%
GCCTCTACGTTCCTTAACAA+TGG - chr7.3:31397691-31397710 None:intergenic 45.0%
GGAGAATCCTCTATGATCTC+AGG - chr7.3:31399281-31399300 None:intergenic 45.0%
! AACATGGAAGACTGGTCACA+AGG - chr7.3:31399302-31399321 None:intergenic 45.0%
! CATTGATGACCATCTTCCAC+GGG - chr7.3:31398662-31398681 None:intergenic 45.0%
! CCATTGATGACCATCTTCCA+CGG - chr7.3:31398663-31398682 None:intergenic 45.0%
! GGGCTTTAGTGACTTTGTGT+TGG - chr7.3:31398322-31398341 None:intergenic 45.0%
!! AATGGACAGTCTTGTTTGGC+TGG - chr7.3:31399353-31399372 None:intergenic 45.0%
!! AGTCTTGTTTGGCTGGTGTT+GGG - chr7.3:31399346-31399365 None:intergenic 45.0%
CCGTGGAAGATGGTCATCAA+TGG + chr7.3:31398660-31398679 MS.gene036950:CDS 50.0%
CTAAAGCCCCGCCCTAATAT+TGG + chr7.3:31398333-31398352 MS.gene036950:intron 50.0%
GCAAAGCCCTGAGATCATAG+AGG + chr7.3:31399271-31399290 MS.gene036950:CDS 50.0%
TAGGGTCCAATATTAGGGCG+GGG - chr7.3:31398342-31398361 None:intergenic 50.0%
!! CAGTCTTGTTTGGCTGGTGT+TGG - chr7.3:31399347-31399366 None:intergenic 50.0%
!! TCTTGCACACCGATTTCCCA+AGG + chr7.3:31398705-31398724 MS.gene036950:CDS 50.0%
TCTGATCGTCCCGTGGAAGA+TGG + chr7.3:31398650-31398669 MS.gene036950:CDS 55.0%
! GGCTTCCGTGACTTTGGCTT+CGG + chr7.3:31398180-31398199 MS.gene036950:intron 55.0%
!! AGGCACCGAAGCCAAAGTCA+CGG - chr7.3:31398188-31398207 None:intergenic 55.0%
!! CTAGCTCATGGTAGTGGTCG+TGG + chr7.3:31397417-31397436 MS.gene036950:CDS 55.0%
GAAGGAGTCTGATCGTCCCG+TGG + chr7.3:31398643-31398662 MS.gene036950:CDS 60.0%
GGGTGGGGCTTCCGTGACTT+TGG + chr7.3:31398174-31398193 MS.gene036950:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 31397402 31399568 31397402 ID=MS.gene036950
chr7.3 mRNA 31397402 31399568 31397402 ID=MS.gene036950.t1;Parent=MS.gene036950
chr7.3 exon 31397402 31397724 31397402 ID=MS.gene036950.t1.exon1;Parent=MS.gene036950.t1
chr7.3 CDS 31397402 31397724 31397402 ID=cds.MS.gene036950.t1;Parent=MS.gene036950.t1
chr7.3 exon 31398622 31398726 31398622 ID=MS.gene036950.t1.exon2;Parent=MS.gene036950.t1
chr7.3 CDS 31398622 31398726 31398622 ID=cds.MS.gene036950.t1;Parent=MS.gene036950.t1
chr7.3 exon 31399145 31399568 31399145 ID=MS.gene036950.t1.exon3;Parent=MS.gene036950.t1
chr7.3 CDS 31399145 31399568 31399145 ID=cds.MS.gene036950.t1;Parent=MS.gene036950.t1
Gene Sequence

>MS.gene036950

ATGAAAAATGAAAATCTAGCTCATGGTAGTGGTCGTGGAAAAGTGATTGATGAATTGTTAAAAGGGCGTGAACTTGCACACAAACTTAGAAATATTCTGAATGAAAGTGGTGATATTGATAACATTAATGGATCAACAACACCAGTTGCTGAAGATCTTTTAAAGGAAGTGCTTACAACTTTTACTAATTCCCTATTGTTCTTGAACAATAATCCTACTTCTGAGGGCTCTGATTTGCAACTCACCAAATCTGAGGATTCTTTAGAGAGTAATTGCAAGAGTACTTCCATTGTTAAGGAACGTAGAGGCTGTTACAAAAGAAGGTATTTTTTTTTTTACTAATTACTAATTTTGCTTCCACATATTCAACTCTTTTTACTATATGAGATCTATATAAATAGTTGACCTATTTTAACCTATGGTTTTTCATACACACTATTCATGGATCTCTCCCAACACATCTATAATTCTATATCCACTTTTCATACATCTAAAATTTTTATATGATTTTTTTTATTCTTTTTTTTATTCATACATGCATAGTTTTATATATATAGTGTTTTTCCTTTTTTTTCTTCTTCGGAAAGTATTTTATTTTAGCTGATTTTTTAATTTTATTTTTCTTCTCTTATTTTTCTTCTCTTATTTCTTGACTTATATAATTTCAATTTTATTTGAACTTTTAAGATGAGGTAATGTATAGTTTGTTCTTTAGTATGATTAGCGATTATAATTGCTAATTAATGTCCTTTACAACATATGAGTAATATTGGGGTGGGGCTTCCGTGACTTTGGCTTCGGTGCCTTTGTCTCTATCTCTCTCCTAACCAATAATTTTCTCTTATCAAAATAATTTATTTTAATCATTCAATCATCACTCTCTTTCCTCTAAAATACACTAAAGTCACCAAAGTCACCCAACACAAAGTCACTAAAGCCCCGCCCTAATATTGGACCCTATCAATTATTGTTCATCATCATTGTCATCATATCCACTACATGTGATGAAAGGACTATGTTGCAATTATCCCTCTCATTTTTATTTATTTTGTTGTGTTTTTTTTTTGTGGTGCTTTATTTATTTTGTTGTTTCCTCTAGTTATTATGGTTTTGGCTGACACAGTAAAATTATTTGATTGTTTCATAGTCTTACATTGATTGGTTTTGAGTTTTTTTTGGTAAACTTATAAAACTTACCCAATTATGCAATTCTTTTTCAGAAAAGTTTCACAAACATGGGAGAAGGAGTCTGATCGTCCCGTGGAAGATGGTCATCAATGGAGAAAGTATGGCCAAAAAAAGATCTTGCACACCGATTTCCCAAGGTATATTTATACGAGTTTAATTAAGTACAAACCCAGTTTACTTTTAAGATTGTCATCCAATACAATCAAATTTCACTATTTGAACACATTATCATGTTAACTGATTTTTAAATTAATTAATTTAATTACTACGATGTCGAGATTTGATTTAATAATTAATTAGTAAAATGATTTATAATATCAATGTATATATAATTTAATTTCTTTACATCTTAAAGGATTGAGTCGATCAACTGATTTGAAAGGATTGAGTCGATCAACTGATTTGAATAAAATGTTAAATGAGTTGAAGGAGTATCTTAGTTCAAATTTTAAAACTTATATTTAGTTTTATACAAAAAAAAATTCCTCTAATTCTTCTTTCTTAATATCTCTTCTATATGCTAAGAAGCTAAATGAATATTTATATGCTTTGCAGGAACTATTACAGGTGCACTCACAAACATGATCAAGGTTGCAAAGCAACAAAACAAGTGCAACAAATTCAAGAGGAACCACCTCTTTACAAAACAACCTACTATGGCCATCACACTTGTAGAATCTTGCAAAGCCCTGAGATCATAGAGGATTCTCCTTGTGACCAGTCTTCCATGTTCCTTAGCTTTGACAACTCTTTCCCAACACCAGCCAAACAAGACTGTCCATTTCTCTCAGTGAAAAAGGAGGATTGCAAGGAAGAGATTGTTCATCCTCCTCCTTCAAATGATTACCTCTCTGGACTCACTTTTGATGATCCAGAAAAGGATGTCACACTATCATCAACACTTGATTCTCATGATCAGTTAGGTGTCAACATTCCTGATATCATGTATGATGATGTCCTTAATTGGCCACTTTCTTGA
Protein sequence

>MS.gene036950.t1

MKNENLAHGSGRGKVIDELLKGRELAHKLRNILNESGDIDNINGSTTPVAEDLLKEVLTTFTNSLLFLNNNPTSEGSDLQLTKSEDSLESNCKSTSIVKERRGCYKRRKVSQTWEKESDRPVEDGHQWRKYGQKKILHTDFPRNYYRCTHKHDQGCKATKQVQQIQEEPPLYKTTYYGHHTCRILQSPEIIEDSPCDQSSMFLSFDNSFPTPAKQDCPFLSVKKEDCKEEIVHPPPSNDYLSGLTFDDPEKDVTLSSTLDSHDQLGVNIPDIMYDDVLNWPLS