Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03706.t1 | XP_003606331.2 | 78.2 | 325 | 18 | 1 | 1 | 272 | 11 | 335 | 2.30E-104 | 388.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03706.t1 | Q0V7X4 | 49.4 | 318 | 112 | 6 | 1 | 270 | 1 | 317 | 8.1e-50 | 198.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03706.t1 | G7JN98 | 78.2 | 325 | 18 | 1 | 1 | 272 | 11 | 335 | 1.7e-104 | 388.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene03706.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03706.t1 | MTR_4g057270 | 79.385 | 325 | 14 | 1 | 1 | 272 | 11 | 335 | 3.59e-168 | 468 |
| MS.gene03706.t1 | MTR_2g084280 | 56.918 | 318 | 75 | 5 | 7 | 270 | 4 | 313 | 2.66e-109 | 318 |
| MS.gene03706.t1 | MTR_8g064700 | 30.108 | 186 | 119 | 5 | 77 | 256 | 235 | 415 | 2.21e-18 | 84.3 |
| MS.gene03706.t1 | MTR_3g030700 | 33.529 | 170 | 101 | 5 | 75 | 239 | 185 | 347 | 1.54e-17 | 81.6 |
| MS.gene03706.t1 | MTR_3g104100 | 32.121 | 165 | 95 | 5 | 85 | 239 | 194 | 351 | 2.64e-16 | 78.2 |
| MS.gene03706.t1 | MTR_2g038040 | 31.707 | 164 | 95 | 4 | 85 | 234 | 51 | 211 | 3.39e-16 | 76.3 |
| MS.gene03706.t1 | MTR_1g112680 | 32.414 | 145 | 71 | 3 | 80 | 197 | 311 | 455 | 6.19e-16 | 77.8 |
| MS.gene03706.t1 | MTR_8g067280 | 30.000 | 160 | 101 | 4 | 90 | 239 | 466 | 624 | 2.48e-15 | 75.9 |
| MS.gene03706.t1 | MTR_3g498695 | 34.746 | 118 | 77 | 0 | 35 | 152 | 247 | 364 | 1.90e-14 | 73.2 |
| MS.gene03706.t1 | MTR_3g498695 | 34.746 | 118 | 77 | 0 | 35 | 152 | 247 | 364 | 2.07e-14 | 73.2 |
| MS.gene03706.t1 | MTR_2g081040 | 31.515 | 165 | 96 | 6 | 85 | 239 | 176 | 333 | 4.14e-14 | 71.6 |
| MS.gene03706.t1 | MTR_8g027495 | 33.140 | 172 | 96 | 8 | 90 | 259 | 462 | 616 | 4.52e-14 | 72.4 |
| MS.gene03706.t1 | MTR_5g030430 | 31.333 | 150 | 92 | 4 | 90 | 229 | 497 | 645 | 5.32e-14 | 72.0 |
| MS.gene03706.t1 | MTR_4g091910 | 32.278 | 158 | 90 | 5 | 85 | 237 | 46 | 191 | 7.86e-14 | 68.9 |
| MS.gene03706.t1 | MTR_8g024790 | 27.488 | 211 | 113 | 8 | 43 | 229 | 239 | 433 | 1.32e-12 | 67.8 |
| MS.gene03706.t1 | MTR_7g083900 | 51.724 | 58 | 28 | 0 | 85 | 142 | 285 | 342 | 2.42e-12 | 67.0 |
| MS.gene03706.t1 | MTR_7g083900 | 51.724 | 58 | 28 | 0 | 85 | 142 | 285 | 342 | 2.42e-12 | 67.0 |
| MS.gene03706.t1 | MTR_7g117670 | 51.923 | 52 | 25 | 0 | 90 | 141 | 406 | 457 | 6.49e-12 | 65.9 |
| MS.gene03706.t1 | MTR_4g097950 | 28.571 | 133 | 89 | 2 | 88 | 214 | 72 | 204 | 2.59e-11 | 62.8 |
| MS.gene03706.t1 | MTR_5g014640 | 30.380 | 158 | 89 | 5 | 88 | 241 | 156 | 296 | 5.50e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03706.t1 | AT2G28160 | 48.171 | 328 | 101 | 7 | 1 | 270 | 1 | 317 | 3.87e-86 | 260 |
| MS.gene03706.t1 | AT2G28160 | 47.205 | 322 | 101 | 7 | 1 | 264 | 1 | 311 | 7.91e-82 | 249 |
| MS.gene03706.t1 | AT5G57150 | 39.490 | 157 | 85 | 4 | 85 | 233 | 54 | 208 | 9.18e-24 | 96.3 |
| MS.gene03706.t1 | AT5G57150 | 39.490 | 157 | 85 | 4 | 85 | 233 | 53 | 207 | 9.80e-24 | 96.3 |
| MS.gene03706.t1 | AT5G57150 | 39.490 | 157 | 85 | 4 | 85 | 233 | 54 | 208 | 1.14e-23 | 96.3 |
| MS.gene03706.t1 | AT5G57150 | 39.490 | 157 | 85 | 4 | 85 | 233 | 53 | 207 | 1.41e-23 | 96.7 |
| MS.gene03706.t1 | AT5G57150 | 39.490 | 157 | 85 | 4 | 85 | 233 | 54 | 208 | 3.66e-23 | 95.9 |
| MS.gene03706.t1 | AT4G29930 | 35.366 | 164 | 92 | 4 | 76 | 239 | 48 | 197 | 9.69e-21 | 88.6 |
| MS.gene03706.t1 | AT2G16910 | 35.838 | 173 | 85 | 5 | 84 | 231 | 312 | 483 | 1.07e-20 | 91.7 |
| MS.gene03706.t1 | AT4G29930 | 34.132 | 167 | 97 | 4 | 76 | 241 | 48 | 202 | 1.09e-20 | 88.2 |
| MS.gene03706.t1 | AT4G29930 | 34.337 | 166 | 95 | 4 | 76 | 241 | 48 | 199 | 3.58e-20 | 86.7 |
| MS.gene03706.t1 | AT4G29930 | 34.031 | 191 | 87 | 6 | 76 | 239 | 48 | 226 | 4.43e-19 | 84.7 |
| MS.gene03706.t1 | AT4G29930 | 34.031 | 191 | 87 | 6 | 76 | 239 | 48 | 226 | 4.43e-19 | 84.7 |
| MS.gene03706.t1 | AT4G29930 | 34.444 | 180 | 79 | 6 | 76 | 228 | 48 | 215 | 1.33e-18 | 83.2 |
| MS.gene03706.t1 | AT4G29930 | 42.202 | 109 | 45 | 3 | 85 | 182 | 53 | 154 | 1.02e-16 | 76.6 |
| MS.gene03706.t1 | AT1G10610 | 33.333 | 120 | 77 | 2 | 80 | 196 | 161 | 280 | 8.73e-15 | 73.6 |
| MS.gene03706.t1 | AT1G10610 | 33.333 | 120 | 77 | 2 | 80 | 196 | 228 | 347 | 1.28e-14 | 73.6 |
| MS.gene03706.t1 | AT1G10610 | 33.333 | 120 | 77 | 2 | 80 | 196 | 258 | 377 | 1.43e-14 | 73.6 |
| MS.gene03706.t1 | AT1G01260 | 32.500 | 160 | 81 | 4 | 79 | 235 | 423 | 558 | 3.34e-14 | 72.8 |
| MS.gene03706.t1 | AT1G01260 | 32.500 | 160 | 81 | 4 | 79 | 235 | 423 | 558 | 3.34e-14 | 72.8 |
| MS.gene03706.t1 | AT1G01260 | 32.500 | 160 | 81 | 4 | 79 | 235 | 423 | 558 | 3.34e-14 | 72.8 |
| MS.gene03706.t1 | AT2G46510 | 48.101 | 79 | 38 | 1 | 79 | 154 | 385 | 463 | 4.37e-14 | 72.4 |
| MS.gene03706.t1 | AT4G17880 | 30.282 | 142 | 93 | 4 | 90 | 229 | 420 | 557 | 6.11e-14 | 72.0 |
| MS.gene03706.t1 | AT5G46760 | 28.472 | 144 | 97 | 4 | 90 | 229 | 419 | 560 | 2.92e-13 | 69.7 |
| MS.gene03706.t1 | AT3G26744 | 37.500 | 104 | 60 | 1 | 39 | 142 | 265 | 363 | 1.17e-12 | 67.8 |
| MS.gene03706.t1 | AT3G26744 | 37.500 | 104 | 60 | 1 | 39 | 142 | 265 | 363 | 1.19e-12 | 67.8 |
| MS.gene03706.t1 | AT3G26744 | 37.500 | 104 | 60 | 1 | 39 | 142 | 265 | 363 | 1.19e-12 | 67.8 |
| MS.gene03706.t1 | AT3G26744 | 37.500 | 104 | 60 | 1 | 39 | 142 | 265 | 363 | 1.19e-12 | 67.8 |
| MS.gene03706.t1 | AT1G12860 | 40.964 | 83 | 46 | 1 | 85 | 167 | 266 | 345 | 1.29e-12 | 67.8 |
| MS.gene03706.t1 | AT1G12860 | 40.964 | 83 | 46 | 1 | 85 | 167 | 266 | 345 | 1.48e-12 | 67.4 |
| MS.gene03706.t1 | AT1G32640 | 27.586 | 203 | 126 | 8 | 38 | 229 | 402 | 594 | 2.87e-12 | 67.0 |
| MS.gene03706.t1 | AT4G21330 | 26.178 | 191 | 132 | 5 | 54 | 241 | 4 | 188 | 6.28e-12 | 63.9 |
Find 51 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTTCAGAATTCAAATT+TGG | 0.160318 | 4.3:+43847677 | MS.gene03706:CDS |
| AAATTTGGCAGGTTGATTTC+TGG | 0.184628 | 4.3:-43848036 | None:intergenic |
| AACCTCAGCCTTAAGCTTCT+TGG | 0.225200 | 4.3:-43847321 | None:intergenic |
| AATTGATCCTTGATGAGTTT+TGG | 0.235753 | 4.3:-43847372 | None:intergenic |
| ATCACCCATAGCTTTAAATT+TGG | 0.237169 | 4.3:-43848051 | None:intergenic |
| TGTTAAAATAGTATGCAATA+AGG | 0.282684 | 4.3:+43847602 | MS.gene03706:CDS |
| GAAGTGTACCTTAGTTATAT+TGG | 0.288057 | 4.3:-43846826 | None:intergenic |
| GCTTTACGCATTGCGTTCTT+TGG | 0.305835 | 4.3:+43846800 | MS.gene03706:CDS |
| AAGCTTAAGGCTGAGGTTGC+AGG | 0.310327 | 4.3:+43847326 | MS.gene03706:CDS |
| TTGATGAATTGATCAAAGTT+TGG | 0.317687 | 4.3:-43846411 | None:intergenic |
| AAGTGTACCTTAGTTATATT+GGG | 0.358633 | 4.3:-43846825 | None:intergenic |
| ATTATATTTATAGATGGATA+AGG | 0.392223 | 4.3:+43847247 | MS.gene03706:intron |
| ATGCTTGTTGTAGTTGTTGC+AGG | 0.393956 | 4.3:-43846675 | None:intergenic |
| ACCTGCCAAATTTAAAGCTA+TGG | 0.396521 | 4.3:+43848046 | MS.gene03706:CDS |
| TTAATGTTTGCAAGTGTCTC+TGG | 0.404175 | 4.3:-43846354 | None:intergenic |
| ATTACAAGCCAAGAAGCTTA+AGG | 0.413672 | 4.3:+43847313 | MS.gene03706:CDS |
| GTTAAAATAGTATGCAATAA+GGG | 0.416472 | 4.3:+43847603 | MS.gene03706:CDS |
| ATGGATAAGGCTTCTATCAT+TGG | 0.423797 | 4.3:+43847260 | MS.gene03706:CDS |
| CCCATAGCTTTAAATTTGGC+AGG | 0.425488 | 4.3:-43848047 | None:intergenic |
| TTTGGTTCCCAATATAACTA+AGG | 0.432332 | 4.3:+43846818 | MS.gene03706:CDS |
| GCTTCTATCATTGGAGATGC+TGG | 0.446595 | 4.3:+43847269 | MS.gene03706:CDS |
| CAATTCATCAATTTGATTCG+TGG | 0.448543 | 4.3:+43846423 | MS.gene03706:CDS |
| CGTAAAGCTTATCCTTCATT+CGG | 0.448572 | 4.3:-43846785 | None:intergenic |
| AATTCATCAATTTGATTCGT+GGG | 0.449395 | 4.3:+43846424 | MS.gene03706:CDS |
| AAGGTATGAATTCAAAGCCT+TGG | 0.451801 | 4.3:-43848089 | None:intergenic |
| TGAAAATAGGTGAAAGACTC+TGG | 0.451976 | 4.3:+43848012 | MS.gene03706:intron |
| GCATATTGAAGCATTGTTGT+TGG | 0.458900 | 4.3:-43847420 | None:intergenic |
| TAGTATGCAATAAGGGAGAA+AGG | 0.463194 | 4.3:+43847610 | MS.gene03706:CDS |
| AATATGCAAGAAAATTGTCC+AGG | 0.466755 | 4.3:+43847436 | MS.gene03706:CDS |
| AAATGATAGATCCAAGACTT+TGG | 0.473297 | 4.3:+43846740 | MS.gene03706:CDS |
| CTTTGGTTTCTGAGAGGAGG+AGG | 0.477163 | 4.3:+43846757 | MS.gene03706:CDS |
| AATTTGGCCACTGTTTCTGA+TGG | 0.483700 | 4.3:+43847693 | MS.gene03706:CDS |
| CCTCTCAGAAACCAAAGTCT+TGG | 0.490550 | 4.3:-43846751 | None:intergenic |
| CATCAATTTGATTCGTGGGG+AGG | 0.498663 | 4.3:+43846428 | MS.gene03706:CDS |
| GAGGAGGCGCAGCCGAATGA+AGG | 0.515398 | 4.3:+43846773 | MS.gene03706:CDS |
| ATGTGTCAAGCGTGAAAAGA+AGG | 0.518768 | 4.3:-43848108 | None:intergenic |
| ATGTTTCAAGTGGATGAAAG+AGG | 0.519776 | 4.3:+43847573 | MS.gene03706:CDS |
| AGTATGCAATAAGGGAGAAA+GGG | 0.525003 | 4.3:+43847611 | MS.gene03706:CDS |
| CCTGCCAAATTTAAAGCTAT+GGG | 0.525800 | 4.3:+43848047 | MS.gene03706:CDS |
| TGTTTCAAGTGGATGAAAGA+GGG | 0.533128 | 4.3:+43847574 | MS.gene03706:CDS |
| TGTTGTAGTTGTTGCAGGAG+AGG | 0.541935 | 4.3:-43846670 | None:intergenic |
| ATCAACACTTGTAGTTGTTG+TGG | 0.544215 | 4.3:-43846700 | None:intergenic |
| AGCCAAGAAGCTTAAGGCTG+AGG | 0.549244 | 4.3:+43847319 | MS.gene03706:CDS |
| AGACTTTGGTTTCTGAGAGG+AGG | 0.567716 | 4.3:+43846754 | MS.gene03706:CDS |
| GAAATAAGAGTAGAAAATGA+TGG | 0.570766 | 4.3:+43846636 | MS.gene03706:CDS |
| GTAGATTGATATGTTTCAAG+TGG | 0.578490 | 4.3:+43847563 | MS.gene03706:intron |
| GCAGTGTCCAAAACTCATCA+AGG | 0.579680 | 4.3:+43847365 | MS.gene03706:CDS |
| CCAAGACTTTGGTTTCTGAG+AGG | 0.603254 | 4.3:+43846751 | MS.gene03706:CDS |
| TAGAAAACCATCAGAAACAG+TGG | 0.631132 | 4.3:-43847700 | None:intergenic |
| ATTCATCAATTTGATTCGTG+GGG | 0.631333 | 4.3:+43846425 | MS.gene03706:CDS |
| ATGCAATAAGGGAGAAAGGG+TGG | 0.649433 | 4.3:+43847614 | MS.gene03706:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTTAACCTTAAATAG+AGG | - | chr4.3:43847757-43847776 | None:intergenic | 15.0% |
| !! | ATTATATTTATAGATGGATA+AGG | + | chr4.3:43847247-43847266 | MS.gene03706:intron | 15.0% |
| !! | TATATTTAACCTTAAATAGA+GGG | - | chr4.3:43847756-43847775 | None:intergenic | 15.0% |
| !!! | TTTTTATTACCATAACATTT+AGG | - | chr4.3:43847929-43847948 | None:intergenic | 15.0% |
| !! | CAAAACTTTGATTCATTATA+AGG | - | chr4.3:43846491-43846510 | None:intergenic | 20.0% |
| !! | CAGATAATGAAATAGAATAA+TGG | - | chr4.3:43847962-43847981 | None:intergenic | 20.0% |
| !! | CTAAAAAAACCTAAATGTTA+TGG | + | chr4.3:43847917-43847936 | MS.gene03706:intron | 20.0% |
| !! | GTTAAAATAGTATGCAATAA+GGG | + | chr4.3:43847603-43847622 | MS.gene03706:CDS | 20.0% |
| !! | TCATGTTATTATGTGAAAAT+AGG | + | chr4.3:43847999-43848018 | MS.gene03706:intron | 20.0% |
| !! | TGTTAAAATAGTATGCAATA+AGG | + | chr4.3:43847602-43847621 | MS.gene03706:CDS | 20.0% |
| !!! | AAACAAAATTACATGCTTTT+AGG | + | chr4.3:43847842-43847861 | MS.gene03706:intron | 20.0% |
| !!! | ACAATGAATCTTAACTATTT+TGG | - | chr4.3:43847103-43847122 | None:intergenic | 20.0% |
| !!! | ATTGTAATTTGTAACATCTT+TGG | + | chr4.3:43847528-43847547 | MS.gene03706:intron | 20.0% |
| !!! | TATTTTGGATAGTAACATAT+AGG | - | chr4.3:43847088-43847107 | None:intergenic | 20.0% |
| !!! | TTGGTAAATTGAATGTTTTT+GGG | - | chr4.3:43847404-43847423 | None:intergenic | 20.0% |
| ! | AAGTGTACCTTAGTTATATT+GGG | - | chr4.3:43846828-43846847 | None:intergenic | 25.0% |
| ! | ATGCTTGTATGAAATTTACA+AGG | - | chr4.3:43847138-43847157 | None:intergenic | 25.0% |
| ! | CAATGTTCAGAATTCAAATT+TGG | + | chr4.3:43847677-43847696 | MS.gene03706:CDS | 25.0% |
| ! | CTCAAATAAAAAGCAAGTAA+AGG | - | chr4.3:43847196-43847215 | None:intergenic | 25.0% |
| ! | GAAATAAGAGTAGAAAATGA+TGG | + | chr4.3:43846636-43846655 | MS.gene03706:CDS | 25.0% |
| ! | TATCTATGTTGTGATCAAAT+GGG | - | chr4.3:43846545-43846564 | None:intergenic | 25.0% |
| ! | TGATATTTATCAAACAAACC+TGG | - | chr4.3:43847457-43847476 | None:intergenic | 25.0% |
| ! | TTATAAGATGAAAATCGCTT+CGG | + | chr4.3:43847043-43847062 | MS.gene03706:intron | 25.0% |
| ! | TTATCTATGTTGTGATCAAA+TGG | - | chr4.3:43846546-43846565 | None:intergenic | 25.0% |
| ! | TTGATGAATTGATCAAAGTT+TGG | - | chr4.3:43846414-43846433 | None:intergenic | 25.0% |
| !! | AATTCATCAATTTGATTCGT+GGG | + | chr4.3:43846424-43846443 | MS.gene03706:CDS | 25.0% |
| !! | AGCGATTTTCATCTTATAAA+TGG | - | chr4.3:43847042-43847061 | None:intergenic | 25.0% |
| !! | TTTATCATAATTTGAAGCAG+CGG | - | chr4.3:43846973-43846992 | None:intergenic | 25.0% |
| !!! | ATGGTTTTAAATTGTTGTTG+CGG | + | chr4.3:43846849-43846868 | MS.gene03706:intron | 25.0% |
| !!! | GTAATTTTGTTTTGTAGAGA+CGG | - | chr4.3:43847834-43847853 | None:intergenic | 25.0% |
| !!! | GTTGGTAAATTGAATGTTTT+TGG | - | chr4.3:43847405-43847424 | None:intergenic | 25.0% |
| !!! | TGGTAAATTGAATGTTTTTG+GGG | - | chr4.3:43847403-43847422 | None:intergenic | 25.0% |
| AAAGAACCAAGTTAAGAAGT+AGG | - | chr4.3:43846588-43846607 | None:intergenic | 30.0% | |
| AAATGATAGATCCAAGACTT+TGG | + | chr4.3:43846740-43846759 | MS.gene03706:CDS | 30.0% | |
| AATATGCAAGAAAATTGTCC+AGG | + | chr4.3:43847436-43847455 | MS.gene03706:CDS | 30.0% | |
| AATTCGTAGAGACTAAAATG+TGG | + | chr4.3:43847886-43847905 | MS.gene03706:intron | 30.0% | |
| AGCTATATTCCCTCTATTTA+AGG | + | chr4.3:43847744-43847763 | MS.gene03706:intron | 30.0% | |
| ATTTGTAACATCTTTGGATG+TGG | + | chr4.3:43847534-43847553 | MS.gene03706:intron | 30.0% | |
| GAAGTGTACCTTAGTTATAT+TGG | - | chr4.3:43846829-43846848 | None:intergenic | 30.0% | |
| GTAACATATAGGCTAAATAG+TGG | - | chr4.3:43847077-43847096 | None:intergenic | 30.0% | |
| GTAGATTGATATGTTTCAAG+TGG | + | chr4.3:43847563-43847582 | MS.gene03706:intron | 30.0% | |
| TATAACTAAGGTACACTTCA+TGG | + | chr4.3:43846830-43846849 | MS.gene03706:intron | 30.0% | |
| TTTGATCCTACTTCTTAACT+TGG | + | chr4.3:43846579-43846598 | MS.gene03706:intron | 30.0% | |
| ! | AATTGATCCTTGATGAGTTT+TGG | - | chr4.3:43847375-43847394 | None:intergenic | 30.0% |
| ! | ATTAGTGCTTTTCTAAACCA+AGG | + | chr4.3:43848072-43848091 | MS.gene03706:CDS | 30.0% |
| ! | ATTCATCAATTTGATTCGTG+GGG | + | chr4.3:43846425-43846444 | MS.gene03706:CDS | 30.0% |
| ! | CAATTCATCAATTTGATTCG+TGG | + | chr4.3:43846423-43846442 | MS.gene03706:CDS | 30.0% |
| ! | TTTGGTTCCCAATATAACTA+AGG | + | chr4.3:43846818-43846837 | MS.gene03706:CDS | 30.0% |
| !! | ATCACCCATAGCTTTAAATT+TGG | - | chr4.3:43848054-43848073 | None:intergenic | 30.0% |
| !! | GAGAAATTTTGACGACATTT+TGG | - | chr4.3:43846900-43846919 | None:intergenic | 30.0% |
| !! | GATCTATCATTTTTCGACTT+TGG | - | chr4.3:43846732-43846751 | None:intergenic | 30.0% |
| AAGGTATGAATTCAAAGCCT+TGG | - | chr4.3:43848092-43848111 | None:intergenic | 35.0% | |
| AGTATGCAATAAGGGAGAAA+GGG | + | chr4.3:43847611-43847630 | MS.gene03706:CDS | 35.0% | |
| ATCAACACTTGTAGTTGTTG+TGG | - | chr4.3:43846703-43846722 | None:intergenic | 35.0% | |
| ATGGATAAGGCTTCTATCAT+TGG | + | chr4.3:43847260-43847279 | MS.gene03706:CDS | 35.0% | |
| ATTACAAGCCAAGAAGCTTA+AGG | + | chr4.3:43847313-43847332 | MS.gene03706:CDS | 35.0% | |
| ATTTCTCTCGTGAAACCATT+AGG | + | chr4.3:43846913-43846932 | MS.gene03706:intron | 35.0% | |
| CGTAAAGCTTATCCTTCATT+CGG | - | chr4.3:43846788-43846807 | None:intergenic | 35.0% | |
| TAGAAAACCATCAGAAACAG+TGG | - | chr4.3:43847703-43847722 | None:intergenic | 35.0% | |
| TAGTATGCAATAAGGGAGAA+AGG | + | chr4.3:43847610-43847629 | MS.gene03706:CDS | 35.0% | |
| TGAAAATAGGTGAAAGACTC+TGG | + | chr4.3:43848012-43848031 | MS.gene03706:intron | 35.0% | |
| TTAATGTTTGCAAGTGTCTC+TGG | - | chr4.3:43846357-43846376 | None:intergenic | 35.0% | |
| TTTCTCTCGTGAAACCATTA+GGG | + | chr4.3:43846914-43846933 | MS.gene03706:intron | 35.0% | |
| ! | ACCTGCCAAATTTAAAGCTA+TGG | + | chr4.3:43848046-43848065 | MS.gene03706:CDS | 35.0% |
| ! | ATGTTGTGATCAAATGGGTT+TGG | - | chr4.3:43846540-43846559 | None:intergenic | 35.0% |
| ! | ATGTTTCAAGTGGATGAAAG+AGG | + | chr4.3:43847573-43847592 | MS.gene03706:CDS | 35.0% |
| ! | CCTGCCAAATTTAAAGCTAT+GGG | + | chr4.3:43848047-43848066 | MS.gene03706:CDS | 35.0% |
| ! | TGTTTCAAGTGGATGAAAGA+GGG | + | chr4.3:43847574-43847593 | MS.gene03706:CDS | 35.0% |
| !! | AAATTTGGCAGGTTGATTTC+TGG | - | chr4.3:43848039-43848058 | None:intergenic | 35.0% |
| !! | GACATTTTGGCGCAATATAA+AGG | - | chr4.3:43846887-43846906 | None:intergenic | 35.0% |
| !! | GCATATTGAAGCATTGTTGT+TGG | - | chr4.3:43847423-43847442 | None:intergenic | 35.0% |
| !!! | AGATTTTGAAGTCTCCCTAA+TGG | - | chr4.3:43846931-43846950 | None:intergenic | 35.0% |
| !!! | GGTTCTTTCTCTTGTTTTGA+TGG | + | chr4.3:43846600-43846619 | MS.gene03706:intron | 35.0% |
| !!! | TGTTTTGATGGAGAAGCTAA+GGG | + | chr4.3:43846612-43846631 | MS.gene03706:intron | 35.0% |
| !!! | TTGTTTTGATGGAGAAGCTA+AGG | + | chr4.3:43846611-43846630 | MS.gene03706:intron | 35.0% |
| ! | GTTTTGTAGAGACGGAAAAG+TGG | - | chr4.3:43847826-43847845 | None:intergenic | 40.0% |
| ! | TTGTGATCAAATGGGTTTGG+AGG | - | chr4.3:43846537-43846556 | None:intergenic | 40.0% |
| ! | TTTTGATGGAGAAGCTAAGG+GGG | + | chr4.3:43846614-43846633 | MS.gene03706:intron | 40.0% |
| !! | AATTTGGCCACTGTTTCTGA+TGG | + | chr4.3:43847693-43847712 | MS.gene03706:CDS | 40.0% |
| !! | ATGCTTGTTGTAGTTGTTGC+AGG | - | chr4.3:43846678-43846697 | None:intergenic | 40.0% |
| !! | CCCATAGCTTTAAATTTGGC+AGG | - | chr4.3:43848050-43848069 | None:intergenic | 40.0% |
| !! | GTTTTGATGGAGAAGCTAAG+GGG | + | chr4.3:43846613-43846632 | MS.gene03706:intron | 40.0% |
| AACCTCAGCCTTAAGCTTCT+TGG | - | chr4.3:43847324-43847343 | None:intergenic | 45.0% | |
| ATGCAATAAGGGAGAAAGGG+TGG | + | chr4.3:43847614-43847633 | MS.gene03706:CDS | 45.0% | |
| CCTCTCAGAAACCAAAGTCT+TGG | - | chr4.3:43846754-43846773 | None:intergenic | 45.0% | |
| GCAGTGTCCAAAACTCATCA+AGG | + | chr4.3:43847365-43847384 | MS.gene03706:CDS | 45.0% | |
| GCTTCTATCATTGGAGATGC+TGG | + | chr4.3:43847269-43847288 | MS.gene03706:CDS | 45.0% | |
| GCTTTACGCATTGCGTTCTT+TGG | + | chr4.3:43846800-43846819 | MS.gene03706:CDS | 45.0% | |
| TGTTGTAGTTGTTGCAGGAG+AGG | - | chr4.3:43846673-43846692 | None:intergenic | 45.0% | |
| ! | AGACTTTGGTTTCTGAGAGG+AGG | + | chr4.3:43846754-43846773 | MS.gene03706:CDS | 45.0% |
| ! | CATCAATTTGATTCGTGGGG+AGG | + | chr4.3:43846428-43846447 | MS.gene03706:CDS | 45.0% |
| ! | CCAAGACTTTGGTTTCTGAG+AGG | + | chr4.3:43846751-43846770 | MS.gene03706:CDS | 45.0% |
| !! | TATTTAATTATATTTATAGA+TGG | + | chr4.3:43847241-43847260 | MS.gene03706:intron | 5.0% |
| AAGCTTAAGGCTGAGGTTGC+AGG | + | chr4.3:43847326-43847345 | MS.gene03706:CDS | 50.0% | |
| AGCCAAGAAGCTTAAGGCTG+AGG | + | chr4.3:43847319-43847338 | MS.gene03706:CDS | 50.0% | |
| ! | CTTTGGTTTCTGAGAGGAGG+AGG | + | chr4.3:43846757-43846776 | MS.gene03706:CDS | 50.0% |
| ! | GAGGAGGCGCAGCCGAATGA+AGG | + | chr4.3:43846773-43846792 | MS.gene03706:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 43846342 | 43848125 | 43846342 | ID=MS.gene03706 |
| chr4.3 | mRNA | 43846342 | 43848125 | 43846342 | ID=MS.gene03706.t1;Parent=MS.gene03706 |
| chr4.3 | exon | 43846342 | 43846471 | 43846342 | ID=MS.gene03706.t1.exon1;Parent=MS.gene03706.t1 |
| chr4.3 | CDS | 43846342 | 43846471 | 43846342 | ID=cds.MS.gene03706.t1;Parent=MS.gene03706.t1 |
| chr4.3 | exon | 43846628 | 43846839 | 43846628 | ID=MS.gene03706.t1.exon2;Parent=MS.gene03706.t1 |
| chr4.3 | CDS | 43846628 | 43846839 | 43846628 | ID=cds.MS.gene03706.t1;Parent=MS.gene03706.t1 |
| chr4.3 | exon | 43847260 | 43847457 | 43847260 | ID=MS.gene03706.t1.exon3;Parent=MS.gene03706.t1 |
| chr4.3 | CDS | 43847260 | 43847457 | 43847260 | ID=cds.MS.gene03706.t1;Parent=MS.gene03706.t1 |
| chr4.3 | exon | 43847567 | 43847740 | 43847567 | ID=MS.gene03706.t1.exon4;Parent=MS.gene03706.t1 |
| chr4.3 | CDS | 43847567 | 43847740 | 43847567 | ID=cds.MS.gene03706.t1;Parent=MS.gene03706.t1 |
| chr4.3 | exon | 43848021 | 43848125 | 43848021 | ID=MS.gene03706.t1.exon5;Parent=MS.gene03706.t1 |
| chr4.3 | CDS | 43848021 | 43848125 | 43848021 | ID=cds.MS.gene03706.t1;Parent=MS.gene03706.t1 |
| Gene Sequence |
| Protein sequence |
