AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037066

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037066.t1 MTR_2g038040 93.056 216 15 0 1 216 1 216 1.61e-149 415
MS.gene037066.t1 MTR_1g112680 32.911 237 128 7 6 213 258 492 1.52e-21 92.4
MS.gene037066.t1 MTR_8g064700 30.120 166 108 2 51 216 243 400 1.77e-20 89.0
MS.gene037066.t1 MTR_3g030700 37.736 159 83 6 51 205 195 341 1.41e-18 83.2
MS.gene037066.t1 MTR_3g498695 32.927 164 97 4 48 206 294 449 1.26e-17 80.9
MS.gene037066.t1 MTR_3g498695 32.927 164 97 4 48 206 294 449 1.40e-17 80.9
MS.gene037066.t1 MTR_4g057270 30.588 170 101 3 51 217 148 303 2.80e-16 76.6
MS.gene037066.t1 MTR_2g084280 28.402 169 100 3 51 216 132 282 1.03e-15 74.7
MS.gene037066.t1 MTR_2g081040 33.537 164 90 6 51 206 176 328 2.16e-15 74.3
MS.gene037066.t1 MTR_7g083900 34.756 164 94 6 49 206 283 439 3.87e-15 73.9
MS.gene037066.t1 MTR_7g083900 34.756 164 94 6 49 206 283 439 3.87e-15 73.9
MS.gene037066.t1 MTR_7g117670 60.000 55 22 0 53 107 403 457 6.56e-15 73.2
MS.gene037066.t1 MTR_5g030430 27.439 164 117 2 53 216 494 655 1.15e-14 72.8
MS.gene037066.t1 MTR_4g091990 31.515 165 81 3 51 215 44 176 1.83e-14 69.7
MS.gene037066.t1 MTR_8g027495 55.932 59 26 0 53 111 459 517 1.98e-14 72.0
MS.gene037066.t1 MTR_8g067280 29.487 156 96 3 53 202 463 610 5.13e-14 70.9
MS.gene037066.t1 MTR_7g096350 42.308 104 46 4 53 156 356 445 6.19e-14 70.5
MS.gene037066.t1 MTR_3g104100 31.902 163 92 6 51 205 194 345 1.81e-13 68.6
MS.gene037066.t1 MTR_2g104560 23.182 220 130 5 12 214 4 201 5.00e-13 66.2
MS.gene037066.t1 MTR_8g024790 28.049 164 106 4 53 216 292 443 5.64e-13 67.4
MS.gene037066.t1 MTR_4g091910 29.341 167 98 3 50 215 45 192 8.35e-13 65.1
MS.gene037066.t1 MTR_8g024770 60.000 45 18 0 53 97 280 324 9.57e-13 66.6
MS.gene037066.t1 MTR_4g092700 29.448 163 100 4 53 214 159 307 8.58e-12 63.5
MS.gene037066.t1 MTR_2g010450 28.221 163 103 3 53 214 178 327 3.34e-11 62.0
MS.gene037066.t1 MTR_3g111290 55.882 68 29 1 48 115 169 235 3.84e-11 62.0
MS.gene037066.t1 MTR_5g014600 26.702 191 111 7 37 216 136 308 4.73e-11 61.6
MS.gene037066.t1 MTR_5g030770 34.320 169 89 4 48 216 152 298 5.18e-11 61.2
MS.gene037066.t1 MTR_8g009020 26.506 166 108 4 53 214 144 299 6.14e-11 61.2
MS.gene037066.t1 MTR_2g104490 28.659 164 88 5 53 209 138 279 7.73e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037066.t1 AT5G57150 65.138 218 68 6 1 215 1 213 3.56e-84 249
MS.gene037066.t1 AT5G57150 64.545 220 70 6 1 217 1 215 3.78e-84 250
MS.gene037066.t1 AT5G57150 64.091 220 70 6 1 216 1 215 1.02e-83 248
MS.gene037066.t1 AT5G57150 63.636 220 71 6 1 216 1 215 1.31e-83 248
MS.gene037066.t1 AT5G57150 63.636 220 71 6 1 216 1 215 8.62e-82 244
MS.gene037066.t1 AT4G29930 54.386 228 90 3 1 216 1 226 1.21e-79 239
MS.gene037066.t1 AT4G29930 54.386 228 90 3 1 216 1 226 1.21e-79 239
MS.gene037066.t1 AT4G29930 53.712 229 92 3 1 217 1 227 2.49e-79 238
MS.gene037066.t1 AT4G29930 53.425 219 82 2 1 217 1 201 3.78e-76 229
MS.gene037066.t1 AT4G29930 54.128 218 77 3 1 216 1 197 1.16e-75 228
MS.gene037066.t1 AT4G29930 53.425 219 79 3 1 217 1 198 1.82e-75 227
MS.gene037066.t1 AT4G29930 53.714 175 67 3 1 163 1 173 6.15e-54 171
MS.gene037066.t1 AT3G26744 34.884 172 101 5 49 216 304 468 3.29e-17 79.7
MS.gene037066.t1 AT2G28160 31.646 158 92 4 51 205 130 274 4.59e-17 78.6
MS.gene037066.t1 AT2G28160 31.646 158 92 4 51 205 130 274 5.58e-17 78.2
MS.gene037066.t1 AT2G16910 30.636 173 108 3 51 213 313 483 7.57e-17 79.0
MS.gene037066.t1 AT1G12860 35.088 171 98 6 49 216 264 424 1.20e-16 78.2
MS.gene037066.t1 AT3G26744 35.185 162 94 5 49 206 304 458 1.23e-16 78.2
MS.gene037066.t1 AT3G26744 35.185 162 94 5 49 206 304 458 1.23e-16 78.2
MS.gene037066.t1 AT3G26744 35.185 162 94 5 49 206 304 458 1.23e-16 78.2
MS.gene037066.t1 AT1G01260 29.381 194 102 4 24 217 405 563 1.69e-16 77.8
MS.gene037066.t1 AT1G01260 29.381 194 102 4 24 217 405 563 1.69e-16 77.8
MS.gene037066.t1 AT1G01260 29.381 194 102 4 24 217 405 563 1.69e-16 77.8
MS.gene037066.t1 AT1G12860 35.404 161 91 6 49 206 264 414 4.37e-16 76.6
MS.gene037066.t1 AT2G46510 61.818 55 21 0 53 107 396 450 1.06e-15 75.5
MS.gene037066.t1 AT4G17880 28.977 176 88 5 53 216 417 567 3.99e-15 73.9
MS.gene037066.t1 AT5G46760 33.333 153 87 6 53 202 416 556 1.06e-14 72.8
MS.gene037066.t1 AT4G16430 46.053 76 40 1 53 127 321 396 1.77e-14 72.0
MS.gene037066.t1 AT1G32640 31.333 150 91 3 53 202 453 590 2.06e-14 72.0
MS.gene037066.t1 AT4G21330 29.940 167 107 4 51 217 31 187 5.64e-13 65.9
MS.gene037066.t1 AT5G46830 28.667 150 92 2 53 202 344 478 1.76e-12 66.2
MS.gene037066.t1 AT1G63650 30.061 163 107 3 56 212 409 570 6.50e-12 64.7
MS.gene037066.t1 AT1G63650 30.061 163 107 3 56 212 409 570 6.50e-12 64.7
MS.gene037066.t1 AT1G63650 30.061 163 107 3 56 212 409 570 6.50e-12 64.7
MS.gene037066.t1 AT4G37850 29.586 169 100 5 53 217 153 306 1.72e-11 62.8
MS.gene037066.t1 AT4G37850 29.586 169 100 5 53 217 153 306 1.72e-11 62.8
MS.gene037066.t1 AT4G00870 43.333 60 34 0 53 112 250 309 2.01e-11 62.8
MS.gene037066.t1 AT1G10610 31.210 157 89 4 51 202 263 405 6.99e-11 61.2
MS.gene037066.t1 AT1G10610 31.210 157 89 4 51 202 233 375 8.44e-11 61.2
MS.gene037066.t1 AT1G10610 31.210 157 89 4 51 202 166 308 9.78e-11 60.8

Find 42 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATCTGTTCTCTTCTTCT+TGG 0.200519 2.1:-52455219 None:intergenic
GGATAAAGCTTCAATTATTA+AGG 0.255192 2.1:+52455058 MS.gene037066:CDS
AAGAGGAGGAAGAAGCTTAA+TGG 0.285606 2.1:+52454385 MS.gene037066:CDS
ACCTATCAAGCTCTTGGGTT+TGG 0.289916 2.1:-52454156 None:intergenic
GTGATGAGTACAAGCTTTAC+TGG 0.315934 2.1:+52454116 MS.gene037066:CDS
CCTGATGATGCTGCACCATC+TGG 0.327488 2.1:-52454331 None:intergenic
TAGATTGGATTAATACTATT+AGG 0.340877 2.1:-52455161 None:intergenic
GAGATAATGGAACTTGAATC+TGG 0.344427 2.1:+52455134 MS.gene037066:CDS
ATGTTTACCTTGCTAATGTT+TGG 0.350291 2.1:-52454436 None:intergenic
TGTTTACCTTGCTAATGTTT+GGG 0.357210 2.1:-52454435 None:intergenic
GATTATTCAAGCAGAGATAA+TGG 0.360892 2.1:+52455121 MS.gene037066:CDS
TTTACCTCAAGAACTTCAAT+TGG 0.370892 2.1:-52455272 None:intergenic
ATTGTTACCTATCAAGCTCT+TGG 0.383647 2.1:-52454162 None:intergenic
TTGTGGTTGCAGCTGGGGAT+TGG 0.412240 2.1:+52454273 MS.gene037066:intron
TTGTTACCTATCAAGCTCTT+GGG 0.420680 2.1:-52454161 None:intergenic
TCCAAACCCAAGAGCTTGAT+AGG 0.430262 2.1:+52454155 MS.gene037066:CDS
TATCAAGCTCTTGGGTTTGG+AGG 0.453409 2.1:-52454153 None:intergenic
CCAGATGGTGCAGCATCATC+AGG 0.460325 2.1:+52454331 MS.gene037066:CDS
TCTTGATCAAAATCATAGAT+TGG 0.462231 2.1:-52455176 None:intergenic
TGAGCTTGACATGTAACAAA+AGG 0.468788 2.1:+52456372 MS.gene037066:CDS
CTGATGATGCTGCACCATCT+GGG 0.496200 2.1:-52454330 None:intergenic
GCAGCTTAGGGTTACATACA+TGG 0.504078 2.1:+52456331 MS.gene037066:intron
CTTTCCAATTGAAGTTCTTG+AGG 0.510871 2.1:+52455268 MS.gene037066:CDS
ACATTGACTCTGAGAGGAAG+AGG 0.514432 2.1:+52454368 MS.gene037066:CDS
AAGAGCTTCCTGTGTTGCTA+AGG 0.527358 2.1:+52455195 MS.gene037066:CDS
TTGGGTTTGGAGGAACATGT+TGG 0.533281 2.1:-52454143 None:intergenic
GAGCTTGACATGTAACAAAA+GGG 0.547151 2.1:+52456373 MS.gene037066:CDS
TGATGATGCTGCACCATCTG+GGG 0.561453 2.1:-52454329 None:intergenic
TTCTTGGACCTTAGCAACAC+AGG 0.566724 2.1:-52455203 None:intergenic
CTCATCACCAATGTTCTCCA+TGG 0.572679 2.1:-52454101 None:intergenic
TGATGAGTACAAGCTTTACT+GGG 0.584970 2.1:+52454117 MS.gene037066:CDS
TTTGAAGACAGTCTTCATTG+AGG 0.586246 2.1:+52456484 MS.gene037066:CDS
AGATAATGGAACTTGAATCT+GGG 0.592460 2.1:+52455135 MS.gene037066:CDS
TTAACAACCATGGAGAACAT+TGG 0.592898 2.1:+52454094 None:intergenic
CTAAGAACATTGACTCTGAG+AGG 0.615826 2.1:+52454362 MS.gene037066:CDS
TTGACTCTGAGAGGAAGAGG+AGG 0.620990 2.1:+52454371 MS.gene037066:CDS
TAACAAAAGGGCAGACACAA+TGG 0.621554 2.1:+52456385 MS.gene037066:CDS
ACTCTTTGCACTTAGAGCAG+TGG 0.626022 2.1:+52454411 MS.gene037066:CDS
TATGATTCAAGCTCCCCAGA+TGG 0.634637 2.1:+52454316 MS.gene037066:CDS
CAGCTTAGGGTTACATACAT+GGG 0.636587 2.1:+52456332 MS.gene037066:intron
AGTGGTCCCAAACATTAGCA+AGG 0.661525 2.1:+52454429 MS.gene037066:CDS
ATACATGGGAGAGAATACAA+TGG 0.777577 2.1:+52456346 MS.gene037066:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTAATAATTAAATAA+TGG - chr2.1:52454478-52454497 None:intergenic 0.0%
!! CCAATTTAAAAAAAAAAAAA+AGG + chr2.1:52455382-52455401 MS.gene037066:intron 10.0%
!!! AAAAAATTCTGAATTTTTTT+TGG + chr2.1:52455704-52455723 MS.gene037066:intron 10.0%
!!! CCTTTTTTTTTTTTTTAAAT+TGG - chr2.1:52455385-52455404 None:intergenic 10.0%
!!! TAGGTAATTTAATTTTTTAA+GGG + chr2.1:52454703-52454722 MS.gene037066:intron 10.0%
!! TATTTAACCCTAAAAAAAAT+AGG + chr2.1:52455913-52455932 MS.gene037066:intron 15.0%
!!! ATCTATTTCCTATTTTTTTT+AGG - chr2.1:52455924-52455943 None:intergenic 15.0%
!!! GTAATATATTTTCTCTATTA+GGG - chr2.1:52456081-52456100 None:intergenic 15.0%
!!! GTAGGTAATTTAATTTTTTA+AGG + chr2.1:52454702-52454721 MS.gene037066:intron 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr2.1:52455506-52455525 None:intergenic 15.0%
!!! TCTATTTCCTATTTTTTTTA+GGG - chr2.1:52455923-52455942 None:intergenic 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG + chr2.1:52455820-52455839 MS.gene037066:intron 15.0%
!!! TGCTTATATTTTATTACAAA+CGG + chr2.1:52454652-52454671 MS.gene037066:intron 15.0%
!! AACTTCAAAAAAATAGATAG+TGG + chr2.1:52455980-52455999 MS.gene037066:intron 20.0%
!! AATTTCTTTCTAATTATGAG+TGG + chr2.1:52455012-52455031 MS.gene037066:intron 20.0%
!! ACTTCAAAAAAATAGATAGT+GGG + chr2.1:52455981-52456000 MS.gene037066:intron 20.0%
!! AGAAAGTGAAATGAAATTAA+AGG - chr2.1:52456522-52456541 None:intergenic 20.0%
!! ATGCTAAAAAAATAAATGTG+GGG + chr2.1:52456227-52456246 MS.gene037066:intron 20.0%
!! CTAACAACATGTTTAAAAAA+TGG - chr2.1:52454899-52454918 None:intergenic 20.0%
!! CTACTATCTTCATAAAATAT+AGG + chr2.1:52454575-52454594 MS.gene037066:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG + chr2.1:52455880-52455899 MS.gene037066:intron 20.0%
!! GAAATAATTAAACCATATGA+TGG - chr2.1:52454971-52454990 None:intergenic 20.0%
!! GATGCTAAAAAAATAAATGT+GGG + chr2.1:52456226-52456245 MS.gene037066:intron 20.0%
!! GTTAGCAAAAAAAATAATAG+TGG - chr2.1:52456139-52456158 None:intergenic 20.0%
!! TAGATTGGATTAATACTATT+AGG - chr2.1:52455164-52455183 None:intergenic 20.0%
!! TGATGCTAAAAAAATAAATG+TGG + chr2.1:52456225-52456244 MS.gene037066:intron 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr2.1:52455510-52455529 MS.gene037066:intron 20.0%
!!! AAATTTTCAATCTTCACTTT+AGG - chr2.1:52455816-52455835 None:intergenic 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr2.1:52455788-52455807 MS.gene037066:intron 20.0%
!!! ATTAGTACTACTCAATTTTT+TGG + chr2.1:52454495-52454514 MS.gene037066:intron 20.0%
!!! GGTAATATATTTTCTCTATT+AGG - chr2.1:52456082-52456101 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr2.1:52455507-52455526 None:intergenic 20.0%
!!! GTGAAGATTGAAAATTTTAT+AGG + chr2.1:52455819-52455838 MS.gene037066:intron 20.0%
!!! TCTTTAATCTATTTGTTGTT+GGG - chr2.1:52456170-52456189 None:intergenic 20.0%
!!! TTAGTACTACTCAATTTTTT+GGG + chr2.1:52454496-52454515 MS.gene037066:intron 20.0%
!!! TTCTTTAATCTATTTGTTGT+TGG - chr2.1:52456171-52456190 None:intergenic 20.0%
!!! TTGTTTGAATTAAGTGTTTT+GGG + chr2.1:52454546-52454565 MS.gene037066:intron 20.0%
!!! TTTAACCCTTTTTTTTAAGT+TGG - chr2.1:52455411-52455430 None:intergenic 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG - chr2.1:52455907-52455926 None:intergenic 20.0%
!!! TTTGTTTGAATTAAGTGTTT+TGG + chr2.1:52454545-52454564 MS.gene037066:intron 20.0%
!!! TTTTTTAAACATGTTGTTAG+AGG + chr2.1:52454899-52454918 MS.gene037066:intron 20.0%
! AATGCAAAATTGCTCTATTT+AGG - chr2.1:52454767-52454786 None:intergenic 25.0%
! ACCTACAAAGCAAATTAAAT+AGG - chr2.1:52456601-52456620 None:intergenic 25.0%
! AGATTAAAGAAGAGATTGTA+AGG + chr2.1:52456180-52456199 MS.gene037066:intron 25.0%
! AGGAAACCAACTTAAAAAAA+AGG + chr2.1:52455402-52455421 MS.gene037066:intron 25.0%
! ATCATGGTAATTGAGATATA+TGG + chr2.1:52454250-52454269 MS.gene037066:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG + chr2.1:52455879-52455898 MS.gene037066:intron 25.0%
! GAAAACTATTAACCATCATA+TGG + chr2.1:52454956-52454975 MS.gene037066:intron 25.0%
! GAAAAGTTGACATATTTACA+GGG - chr2.1:52455446-52455465 None:intergenic 25.0%
! GGAAACCAACTTAAAAAAAA+GGG + chr2.1:52455403-52455422 MS.gene037066:intron 25.0%
! GGATAAAGCTTCAATTATTA+AGG + chr2.1:52455058-52455077 MS.gene037066:CDS 25.0%
! GGTACAAAAGTAAATGAATT+TGG + chr2.1:52454596-52454615 MS.gene037066:intron 25.0%
! TATAAATCACCACCTTAATA+AGG + chr2.1:52456030-52456049 MS.gene037066:intron 25.0%
! TCTTGATCAAAATCATAGAT+TGG - chr2.1:52455179-52455198 None:intergenic 25.0%
! TGAGTGTGTAATTTGATATA+TGG + chr2.1:52456302-52456321 MS.gene037066:intron 25.0%
! TTAAGGTGGTGATTTATATT+TGG - chr2.1:52456028-52456047 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + chr2.1:52455848-52455867 MS.gene037066:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + chr2.1:52455849-52455868 MS.gene037066:intron 25.0%
!! TAAATAGAGCAATTTTGCAT+TGG + chr2.1:52454766-52454785 MS.gene037066:intron 25.0%
!!! CTTTAATCTATTTGTTGTTG+GGG - chr2.1:52456169-52456188 None:intergenic 25.0%
!!! TCCTATTTAATTTGCTTTGT+AGG + chr2.1:52456597-52456616 MS.gene037066:intron 25.0%
!!! TTTAATCTATTTGTTGTTGG+GGG - chr2.1:52456168-52456187 None:intergenic 25.0%
!!! TTTATATTTGGTTCTAAGCA+TGG - chr2.1:52456016-52456035 None:intergenic 25.0%
ACTAATATTATGTGACACAG+TGG + chr2.1:52454679-52454698 MS.gene037066:intron 30.0%
ATGTTTACCTTGCTAATGTT+TGG - chr2.1:52454439-52454458 None:intergenic 30.0%
CGAAAAGTTGACATATTTAC+AGG - chr2.1:52455447-52455466 None:intergenic 30.0%
CTAATATTATGTGACACAGT+GGG + chr2.1:52454680-52454699 MS.gene037066:intron 30.0%
GATTATTCAAGCAGAGATAA+TGG + chr2.1:52455121-52455140 MS.gene037066:CDS 30.0%
GTAATTGAGATATATGGTTG+TGG + chr2.1:52454256-52454275 MS.gene037066:intron 30.0%
GTGATGTCTTTGATATCTAT+TGG + chr2.1:52454934-52454953 MS.gene037066:intron 30.0%
TCACTTTGATTCAAGTATGA+AGG + chr2.1:52454195-52454214 MS.gene037066:intron 30.0%
TGGTATTTGATAGGTTGTAA+TGG - chr2.1:52456103-52456122 None:intergenic 30.0%
TGTTTACCTTGCTAATGTTT+GGG - chr2.1:52454438-52454457 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr2.1:52455835-52455854 MS.gene037066:intron 30.0%
TTGAAGTTCTTGAGGTAAAT+TGG + chr2.1:52455276-52455295 MS.gene037066:intron 30.0%
TTTACCTCAAGAACTTCAAT+TGG - chr2.1:52455275-52455294 None:intergenic 30.0%
! AAGTCGAAGGAAAATTTTAG+AGG - chr2.1:52455478-52455497 None:intergenic 30.0%
! AGTCGAAGGAAAATTTTAGA+GGG - chr2.1:52455477-52455496 None:intergenic 30.0%
!! AGATAATGGAACTTGAATCT+GGG + chr2.1:52455135-52455154 MS.gene037066:CDS 30.0%
!! AGTCTGATTTGGTATTTGAT+AGG - chr2.1:52456112-52456131 None:intergenic 30.0%
!! ATAGTGGATAAAGTCTGATT+TGG - chr2.1:52456123-52456142 None:intergenic 30.0%
!!! GTGACTTTTTCTTTTTCAGA+TGG + chr2.1:52455037-52455056 MS.gene037066:intron 30.0%
AAAGATGATGATAGAGAGAG+TGG - chr2.1:52455303-52455322 None:intergenic 35.0%
AAGATGATGATAGAGAGAGT+GGG - chr2.1:52455302-52455321 None:intergenic 35.0%
ATACATGGGAGAGAATACAA+TGG + chr2.1:52456346-52456365 MS.gene037066:CDS 35.0%
ATTGTTACCTATCAAGCTCT+TGG - chr2.1:52454165-52454184 None:intergenic 35.0%
CTTTCCAATTGAAGTTCTTG+AGG + chr2.1:52455268-52455287 MS.gene037066:CDS 35.0%
GAGCTTGACATGTAACAAAA+GGG + chr2.1:52456373-52456392 MS.gene037066:CDS 35.0%
GCATCAATAATACAAGAGAG+AGG - chr2.1:52456211-52456230 None:intergenic 35.0%
TATCTTAACATGTGCCTTGA+GGG + chr2.1:52454857-52454876 MS.gene037066:intron 35.0%
TGAGCTTGACATGTAACAAA+AGG + chr2.1:52456372-52456391 MS.gene037066:CDS 35.0%
TGATGAGTACAAGCTTTACT+GGG + chr2.1:52454117-52454136 MS.gene037066:CDS 35.0%
TTATAGGGACTAAAAGTCGA+AGG - chr2.1:52455491-52455510 None:intergenic 35.0%
TTGCTTAACATGTGCTCTAA+GGG - chr2.1:52454744-52454763 None:intergenic 35.0%
TTGTTACCTATCAAGCTCTT+GGG - chr2.1:52454164-52454183 None:intergenic 35.0%
TTTGAAGACAGTCTTCATTG+AGG + chr2.1:52456484-52456503 MS.gene037066:CDS 35.0%
!! ATTTTCTCTATTAGGGTACC+TGG - chr2.1:52456074-52456093 None:intergenic 35.0%
!! GAGATAATGGAACTTGAATC+TGG + chr2.1:52455134-52455153 MS.gene037066:CDS 35.0%
!!! AATTTTAACTTGTGCCCTCA+AGG - chr2.1:52454874-52454893 None:intergenic 35.0%
AAGAGGAGGAAGAAGCTTAA+TGG + chr2.1:52454385-52454404 MS.gene037066:CDS 40.0%
ATATGGTTGAGTGCAGCTTA+GGG + chr2.1:52456319-52456338 MS.gene037066:intron 40.0%
CAGCTTAGGGTTACATACAT+GGG + chr2.1:52456332-52456351 MS.gene037066:intron 40.0%
CTGATCTGTTCTCTTCTTCT+TGG - chr2.1:52455222-52455241 None:intergenic 40.0%
GTATCTTAACATGTGCCTTG+AGG + chr2.1:52454856-52454875 MS.gene037066:intron 40.0%
GTGATGAGTACAAGCTTTAC+TGG + chr2.1:52454116-52454135 MS.gene037066:CDS 40.0%
GTTGCTTAACATGTGCTCTA+AGG - chr2.1:52454745-52454764 None:intergenic 40.0%
TAACAAAAGGGCAGACACAA+TGG + chr2.1:52456385-52456404 MS.gene037066:CDS 40.0%
TATATGGTTGAGTGCAGCTT+AGG + chr2.1:52456318-52456337 MS.gene037066:intron 40.0%
TATTATGTGACACAGTGGGT+AGG + chr2.1:52454684-52454703 MS.gene037066:intron 40.0%
!! AATGGTAGGCCTTATTAAGG+TGG - chr2.1:52456042-52456061 None:intergenic 40.0%
!! ATCTATTTGTTGTTGGGGGT+TGG - chr2.1:52456164-52456183 None:intergenic 40.0%
!! CTAAGAACATTGACTCTGAG+AGG + chr2.1:52454362-52454381 MS.gene037066:CDS 40.0%
!! GGATTGGATGAAGCTTTTTC+AGG + chr2.1:52454289-52454308 MS.gene037066:CDS 40.0%
ACCTATCAAGCTCTTGGGTT+TGG - chr2.1:52454159-52454178 None:intergenic 45.0%
ACTCTTTGCACTTAGAGCAG+TGG + chr2.1:52454411-52454430 MS.gene037066:CDS 45.0%
AGTGGTCCCAAACATTAGCA+AGG + chr2.1:52454429-52454448 MS.gene037066:CDS 45.0%
ATATGGTTGTGGTTGCAGCT+GGG + chr2.1:52454267-52454286 MS.gene037066:intron 45.0%
CAAAAGCCTGCCTGAAAAAG+AGG - chr2.1:52456468-52456487 None:intergenic 45.0%
GCAGCTTAGGGTTACATACA+TGG + chr2.1:52456331-52456350 MS.gene037066:intron 45.0%
GCCTGAAAAAGAGGTGATGT+TGG - chr2.1:52456459-52456478 None:intergenic 45.0%
TATATGGTTGTGGTTGCAGC+TGG + chr2.1:52454266-52454285 MS.gene037066:intron 45.0%
TATCAAGCTCTTGGGTTTGG+AGG - chr2.1:52454156-52454175 None:intergenic 45.0%
TATGATTCAAGCTCCCCAGA+TGG + chr2.1:52454316-52454335 MS.gene037066:CDS 45.0%
TCCAAACCCAAGAGCTTGAT+AGG + chr2.1:52454155-52454174 MS.gene037066:CDS 45.0%
TTCTTGGACCTTAGCAACAC+AGG - chr2.1:52455206-52455225 None:intergenic 45.0%
TTGGGTTTGGAGGAACATGT+TGG - chr2.1:52454146-52454165 None:intergenic 45.0%
! AAGAGCTTCCTGTGTTGCTA+AGG + chr2.1:52455195-52455214 MS.gene037066:CDS 45.0%
! GCCAACATCACCTCTTTTTC+AGG + chr2.1:52456455-52456474 MS.gene037066:CDS 45.0%
! TTCTCTATTAGGGTACCTGG+TGG - chr2.1:52456071-52456090 None:intergenic 45.0%
!! ACATTGACTCTGAGAGGAAG+AGG + chr2.1:52454368-52454387 MS.gene037066:CDS 45.0%
!! GGCAATGGTAGGCCTTATTA+AGG - chr2.1:52456045-52456064 None:intergenic 45.0%
!!! ACATCACCTCTTTTTCAGGC+AGG + chr2.1:52456459-52456478 MS.gene037066:CDS 45.0%
!! ACAAAAATTAAATTAAAAAT+AGG - chr2.1:52455538-52455557 None:intergenic 5.0%
!! CAAAAATTAAATTAAAAATA+GGG - chr2.1:52455537-52455556 None:intergenic 5.0%
!! TAATTAATTATAATTAATCA+TGG + chr2.1:52454234-52454253 MS.gene037066:intron 5.0%
!!! AATATATATTTTTAATAAAG+AGG - chr2.1:52456575-52456594 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+CGG - chr2.1:52455665-52455684 None:intergenic 5.0%
!!! TATAATATTTTAAATTTTTC+TGG + chr2.1:52455736-52455755 MS.gene037066:intron 5.0%
TATGGTTGTGGTTGCAGCTG+GGG + chr2.1:52454268-52454287 MS.gene037066:intron 50.0%
! CTGATGATGCTGCACCATCT+GGG - chr2.1:52454333-52454352 None:intergenic 50.0%
! TATTAGGGTACCTGGTGGTG+TGG - chr2.1:52456066-52456085 None:intergenic 50.0%
! TGATGATGCTGCACCATCTG+GGG - chr2.1:52454332-52454351 None:intergenic 50.0%
! TTGACTCTGAGAGGAAGAGG+AGG + chr2.1:52454371-52454390 MS.gene037066:CDS 50.0%
CCAGATGGTGCAGCATCATC+AGG + chr2.1:52454331-52454350 MS.gene037066:CDS 55.0%
TTGTGGTTGCAGCTGGGGAT+TGG + chr2.1:52454273-52454292 MS.gene037066:intron 55.0%
! CCTGATGATGCTGCACCATC+TGG - chr2.1:52454334-52454353 None:intergenic 55.0%
CCTACCATTGCCACACCACC+AGG + chr2.1:52456053-52456072 MS.gene037066:intron 60.0%
! CCTGGTGGTGTGGCAATGGT+AGG - chr2.1:52456056-52456075 None:intergenic 60.0%
! GGTACCTGGTGGTGTGGCAA+TGG - chr2.1:52456060-52456079 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 52454103 52456627 52454103 ID=MS.gene037066
chr2.1 mRNA 52454103 52456627 52454103 ID=MS.gene037066.t1;Parent=MS.gene037066
chr2.1 exon 52454103 52454176 52454103 ID=MS.gene037066.t1.exon1;Parent=MS.gene037066.t1
chr2.1 CDS 52454103 52454176 52454103 ID=cds.MS.gene037066.t1;Parent=MS.gene037066.t1
chr2.1 exon 52454285 52454450 52454285 ID=MS.gene037066.t1.exon2;Parent=MS.gene037066.t1
chr2.1 CDS 52454285 52454450 52454285 ID=cds.MS.gene037066.t1;Parent=MS.gene037066.t1
chr2.1 exon 52455056 52455289 52455056 ID=MS.gene037066.t1.exon3;Parent=MS.gene037066.t1
chr2.1 CDS 52455056 52455289 52455056 ID=cds.MS.gene037066.t1;Parent=MS.gene037066.t1
chr2.1 exon 52456335 52456505 52456335 ID=MS.gene037066.t1.exon4;Parent=MS.gene037066.t1
chr2.1 CDS 52456335 52456505 52456335 ID=cds.MS.gene037066.t1;Parent=MS.gene037066.t1
chr2.1 exon 52456619 52456627 52456619 ID=MS.gene037066.t1.exon5;Parent=MS.gene037066.t1
chr2.1 CDS 52456619 52456627 52456619 ID=cds.MS.gene037066.t1;Parent=MS.gene037066.t1
Gene Sequence

>MS.gene037066

ATGGAGAACATTGGTGATGAGTACAAGCTTTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGATAGGTAACAATATCATTTAATTCACTTTGATTCAAGTATGAAGGTACAATTAGTGAAATTTAATTAATTATAATTAATCATGGTAATTGAGATATATGGTTGTGGTTGCAGCTGGGGATTGGATGAAGCTTTTTCAGGATATTATGATTCAAGCTCCCCAGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGACTCTGAGAGGAAGAGGAGGAAGAAGCTTAATGGAAGACTCTTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGGTAAACATCACAAATTTTAGTAGTCCATTATTTAATTATTAATAATTAGTACTACTCAATTTTTTGGGTGCAATTTTGCTATTGATTTTTTTGTTTTGTTTGAATTAAGTGTTTTGGGTGAAAACTACTATCTTCATAAAATATAGGTACAAAAGTAAATGAATTTGGTTCATATTTAGACTATATATACATGTATTATTTTGCTTATATTTTATTACAAACGGAGTAACTAATATTATGTGACACAGTGGGTAGGTAATTTAATTTTTTAAGGGTCATGTTAACTTGTGCCCTTAGAGCACATGTTAAGCAACCTAAATAGAGCAATTTTGCATTGGAAAACACAATATAACAACTTTTAAGAAGTTGAATGCACGTCTTTTGATATGTATATTTCTATAATGAGTATCTTAACATGTGCCTTGAGGGCACAAGTTAAAATTAGCCATTTTTTAAACATGTTGTTAGAGGTTTGATCTTAGAGTGATGTCTTTGATATCTATTGGAAAACTATTAACCATCATATGGTTTAATTATTTCGAATGATTAGTCTATGACGTCAATTTCTTTCTAATTATGAGTGGTAGTGACTTTTTCTTTTTCAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATAAAGCACTTGCATGAACAAGAGAAGATTATTCAAGCAGAGATAATGGAACTTGAATCTGGGATGCCTAATAGTATTAATCCAATCTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAGTTATATGATTCTGTCACTTCAAGAAACTTTCCAATTGAAGTTCTTGAGGTAAATTGGCCCACTCTCTCTATCATCATCTTTTTCTCTTTCATGAAATTTTTTAAGAATCAAAATGAATGAATATATTAAGAAACATTATTCCAATTTAAAAAAAAAAAAAAGGAAACCAACTTAAAAAAAAGGGTTAAATATGTTTTTAGTCCCTGTAAATATGTCAACTTTTCGTTTTAGTCCCTCTAAAATTTTCCTTCGACTTTTAGTCCCTATAAAATTTTCAATCACTACTTTTGGTCCCTATTTTTAATTTAATTTTTGTATTTTTTAATGAAATTGTGCAGAAATGTGTAGAGTATTCTAAAAAAATTTACTAAAAAAAATTAGAATTTTTTAACAAAAGACAAATTAAATATGAATTTTTAACCGTAAAAAATATAAAAATTCATATTAAATTCAAGTTTTGTTAAAAAATTCTGAATTTTTTTTGGAGTGATTCTTATAATATTTTAAATTTTTCTGGAAAATTTTATTAAATAATATGAATTCTACATATGAGTTTACTTTAAAAGAGGAACCTAAAGTGAAGATTGAAAATTTTATAGGGACTAAAAGTTGAAGGAAAATTTTAGAGGGACTAAAACGAAAAGTTGACATATTTATAGGGACCAAAAACATATTTAACCCTAAAAAAAATAGGAAATAGATAAATTATTATCAAATTGTCATTATCACTGAGCTCACAACTTCAAAAAAATAGATAGTGGGATTTTCAAACCATGCTTAGAACCAAATATAAATCACCACCTTAATAAGGCCTACCATTGCCACACCACCAGGTACCCTAATAGAGAAAATATATTACCATTACAACCTATCAAATACCAAATCAGACTTTATCCACTATTATTTTTTTTGCTAACAACCAACCCCCAACAACAAATAGATTAAAGAAGAGATTGTAAGGCATAACCTCTCTCTTGTATTATTGATGCTAAAAAAATAAATGTGGGGTGTGATGATTATAATTTTATAATTATCTTTGAATTTCTAAAGCAATTAATTATGAGTGTGTAATTTGATATATGGTTGAGTGCAGCTTAGGGTTACATACATGGGAGAGAATACAATGGTAGTGAGCTTGACATGTAACAAAAGGGCAGACACAATGGTGAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTTAAAATTATTACTGCCAACATCACCTCTTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGTTACTTTTTTATCCTTTAATTTCATTTCACTTTCTTTATTTTATAATAAATATATGATAGTTCATCCTCTTTATTAAAAATATATATTATTCCTATTTAATTTGCTTTGTAGGTAGAGTAG
Protein sequence

>MS.gene037066.t1

MENIGDEYKLYWETNMFLQTQELDSWGLDEAFSGYYDSSSPDGAASSGVSSKNIDSERKRRKKLNGRLFALRAVVPNISKMDKASIIKDAIEYIKHLHEQEKIIQAEIMELESGMPNSINPIYDFDQELPVLLRSKKKRTDQLYDSVTSRNFPIEVLELRVTYMGENTMVVSLTCNKRADTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEVE