AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037068

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037068.t1 MTR_2g038040 83.516 182 21 1 1 173 1 182 8.20e-108 308
MS.gene037068.t1 MTR_2g084280 32.558 129 67 3 42 168 132 242 4.31e-16 74.7
MS.gene037068.t1 MTR_8g064700 33.835 133 80 2 42 174 243 367 5.23e-16 75.1
MS.gene037068.t1 MTR_4g057270 54.839 62 28 0 42 103 148 209 8.27e-16 73.9
MS.gene037068.t1 MTR_1g112680 41.667 96 50 2 12 101 280 375 1.26e-15 73.9
MS.gene037068.t1 MTR_3g498695 62.000 50 19 0 39 88 294 343 7.85e-14 68.9
MS.gene037068.t1 MTR_3g498695 62.000 50 19 0 39 88 294 343 7.85e-14 68.9
MS.gene037068.t1 MTR_7g117670 58.182 55 23 0 44 98 403 457 1.15e-13 68.6
MS.gene037068.t1 MTR_8g027495 55.932 59 26 0 44 102 459 517 1.57e-13 68.2
MS.gene037068.t1 MTR_7g096350 49.367 79 29 3 44 122 356 423 4.72e-13 66.6
MS.gene037068.t1 MTR_8g067280 51.667 60 29 0 44 103 463 522 7.80e-13 66.2
MS.gene037068.t1 MTR_3g030700 36.986 146 72 7 42 179 195 328 2.65e-12 64.3
MS.gene037068.t1 MTR_5g030430 50.000 70 32 1 44 110 494 563 2.75e-12 64.7
MS.gene037068.t1 MTR_7g083900 57.143 49 21 0 40 88 283 331 2.77e-12 64.3
MS.gene037068.t1 MTR_7g083900 57.143 49 21 0 40 88 283 331 2.83e-12 64.3
MS.gene037068.t1 MTR_4g092700 34.021 97 59 1 2 98 122 213 4.07e-12 63.5
MS.gene037068.t1 MTR_8g024770 50.000 62 24 1 44 105 280 334 6.09e-12 63.5
MS.gene037068.t1 MTR_8g024790 44.286 70 28 1 44 102 292 361 1.46e-11 62.4
MS.gene037068.t1 MTR_1g072320 47.368 57 30 0 32 88 459 515 1.58e-11 62.4
MS.gene037068.t1 MTR_2g010450 49.091 55 28 0 44 98 178 232 2.42e-11 61.6
MS.gene037068.t1 MTR_4g091910 35.000 140 63 5 41 155 45 181 2.83e-11 60.1
MS.gene037068.t1 MTR_2g081040 32.857 140 77 5 42 174 176 305 3.88e-11 60.8
MS.gene037068.t1 MTR_3g104100 32.847 137 81 4 42 174 194 323 6.60e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037068.t1 AT5G57150 61.111 162 58 4 13 174 25 181 1.67e-54 172
MS.gene037068.t1 AT5G57150 62.025 158 55 4 17 174 30 182 2.84e-54 172
MS.gene037068.t1 AT5G57150 62.025 158 55 4 17 174 30 182 2.94e-54 172
MS.gene037068.t1 AT5G57150 61.111 162 58 4 13 174 25 181 3.07e-54 172
MS.gene037068.t1 AT5G57150 62.025 158 55 4 17 174 30 182 2.09e-53 171
MS.gene037068.t1 AT4G29930 47.423 194 79 3 1 173 1 192 2.58e-49 160
MS.gene037068.t1 AT4G29930 47.179 195 80 3 1 174 1 193 3.50e-49 160
MS.gene037068.t1 AT4G29930 47.179 195 80 3 1 174 1 193 3.50e-49 160
MS.gene037068.t1 AT4G29930 46.739 184 69 2 1 173 1 166 1.21e-46 152
MS.gene037068.t1 AT4G29930 46.739 184 66 3 1 173 1 163 6.39e-46 150
MS.gene037068.t1 AT4G29930 46.486 185 67 3 1 174 1 164 8.68e-46 150
MS.gene037068.t1 AT4G29930 47.429 175 69 3 1 154 1 173 1.68e-42 140
MS.gene037068.t1 AT2G28160 34.109 129 70 4 42 168 130 245 1.73e-16 75.9
MS.gene037068.t1 AT2G28160 33.333 129 71 3 42 168 130 245 1.78e-16 75.9
MS.gene037068.t1 AT1G01260 48.101 79 37 1 44 122 434 508 3.16e-15 73.2
MS.gene037068.t1 AT1G01260 48.101 79 37 1 44 122 434 508 3.16e-15 73.2
MS.gene037068.t1 AT1G01260 48.101 79 37 1 44 122 434 508 3.16e-15 73.2
MS.gene037068.t1 AT2G46510 58.182 55 23 0 44 98 396 450 4.00e-14 69.7
MS.gene037068.t1 AT2G16910 51.667 60 29 0 42 101 313 372 1.04e-13 68.6
MS.gene037068.t1 AT4G16430 47.368 76 39 1 44 118 321 396 1.13e-13 68.6
MS.gene037068.t1 AT1G32640 55.000 60 25 1 44 103 453 510 4.56e-13 67.0
MS.gene037068.t1 AT1G12860 50.000 60 30 0 40 99 264 323 1.08e-12 65.5
MS.gene037068.t1 AT1G12860 50.000 60 30 0 40 99 264 323 1.11e-12 65.5
MS.gene037068.t1 AT3G26744 59.184 49 20 0 40 88 304 352 1.30e-12 65.5
MS.gene037068.t1 AT3G26744 59.184 49 20 0 40 88 304 352 1.30e-12 65.5
MS.gene037068.t1 AT3G26744 59.184 49 20 0 40 88 304 352 1.30e-12 65.5
MS.gene037068.t1 AT3G26744 59.184 49 20 0 40 88 304 352 1.33e-12 65.5
MS.gene037068.t1 AT5G46760 58.182 55 21 1 44 98 416 468 2.47e-12 64.7
MS.gene037068.t1 AT4G17880 50.847 59 29 0 45 103 418 476 4.42e-12 63.9
MS.gene037068.t1 AT5G46830 47.619 63 31 1 44 104 344 406 6.00e-11 60.5
MS.gene037068.t1 AT1G63650 50.000 58 22 1 46 103 408 458 7.76e-11 60.5
MS.gene037068.t1 AT1G63650 50.000 58 22 1 46 103 408 458 7.76e-11 60.5
MS.gene037068.t1 AT1G63650 50.000 58 22 1 46 103 408 458 7.76e-11 60.5
MS.gene037068.t1 AT4G00870 42.623 61 35 0 44 104 250 310 7.80e-11 60.1

Find 41 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATAATGGAACTTGAATT+TGG 0.174122 2.1:+52397900 MS.gene037068:CDS
CTGATTTGTTCTCTTCTTCT+TGG 0.191764 2.1:-52397985 None:intergenic
GGATAAAGCTTCAATTATTA+AGG 0.255192 2.1:+52397824 MS.gene037068:CDS
TAGTTTGGATTAATATTATT+AGG 0.309618 2.1:-52397927 None:intergenic
GGATTGGATGAGGCTTTAAC+AGG 0.339402 2.1:+52397290 MS.gene037068:CDS
ATGTTTACCTTGCTAATGTT+TGG 0.350291 2.1:-52397437 None:intergenic
TGTTTACCTTGCTAATGTTT+GGG 0.357210 2.1:-52397436 None:intergenic
TTGTGGTTGCAGTTGGGGAT+TGG 0.368783 2.1:+52397274 MS.gene037068:intron
TCTTGATCAAAATCATAGTT+TGG 0.369624 2.1:-52397942 None:intergenic
TTTACCTCAAGGACTTCAAT+TGG 0.374167 2.1:-52398038 None:intergenic
GGTTATTCAAGCTGAGATAA+TGG 0.376023 2.1:+52397887 MS.gene037068:CDS
TTGCAGTTGGGGATTGGATG+AGG 0.422701 2.1:+52397280 MS.gene037068:intron
GTGCTGAGTACAACCCTTAC+CGG 0.425637 2.1:+52397140 MS.gene037068:CDS
ACATTGTCTCTGAGAGGAAC+AGG 0.441534 2.1:+52397369 MS.gene037068:CDS
TACATGTTGGTCTCCCGGTA+AGG 0.449399 2.1:-52397154 None:intergenic
AGATAATGGAACTTGAATTT+GGG 0.453081 2.1:+52397901 MS.gene037068:CDS
TGAGCATGACATGTAACAAA+AGG 0.468788 2.1:+52399108 MS.gene037068:CDS
GCGGATGGTGCAGCATCATC+AGG 0.473222 2.1:+52397332 MS.gene037068:CDS
ACACATGGAAGAGAATATAA+TGG 0.483631 2.1:+52399082 MS.gene037068:CDS
TTACCTACATGTTGGTCTCC+CGG 0.526666 2.1:-52397159 None:intergenic
AAGAGCTTCCTGTGTTGCTA+AGG 0.527358 2.1:+52397961 MS.gene037068:CDS
ACATGTTGGTCTCCCGGTAA+GGG 0.528733 2.1:-52397153 None:intergenic
TGATGATGCTGCACCATCCG+CGG 0.544506 2.1:-52397330 None:intergenic
GAGCATGACATGTAACAAAA+GGG 0.547151 2.1:+52399109 MS.gene037068:CDS
CTTTCCAATTGAAGTCCTTG+AGG 0.548914 2.1:+52398034 MS.gene037068:CDS
TTCTTGGACCTTAGCAACAC+AGG 0.566724 2.1:-52397969 None:intergenic
CTCAGCACCAATGTTCTCCA+TGG 0.577641 2.1:-52397125 None:intergenic
TGCTGAGTACAACCCTTACC+GGG 0.581537 2.1:+52397141 MS.gene037068:CDS
TTCGAAGACAGTCTTCATTG+AGG 0.583420 2.1:+52399220 MS.gene037068:CDS
GCAGCTTAGGGTTACACACA+TGG 0.606797 2.1:+52399067 MS.gene037068:intron
TTAACAACCATGGAGAACAT+TGG 0.610292 2.1:+52397118 None:intergenic
TAACAAAAGGGCAGACACAA+TGG 0.615640 2.1:+52399121 MS.gene037068:CDS
TATGATTCAAGCTCCGCGGA+TGG 0.621734 2.1:+52397317 MS.gene037068:CDS
GATTGGATGAGGCTTTAACA+GGG 0.623983 2.1:+52397291 MS.gene037068:CDS
GGACCACTGCTCTAAGTGCA+AGG 0.633774 2.1:-52397415 None:intergenic
AGTCTTGCATGAGCAAGAGA+AGG 0.639595 2.1:+52397866 MS.gene037068:CDS
CTAAGAACATTGTCTCTGAG+AGG 0.650410 2.1:+52397363 MS.gene037068:CDS
ACTCCTTGCACTTAGAGCAG+TGG 0.656584 2.1:+52397412 MS.gene037068:CDS
AGTGGTCCCAAACATTAGCA+AGG 0.661525 2.1:+52397430 MS.gene037068:CDS
TTGTCTCTGAGAGGAACAGG+AGG 0.687982 2.1:+52397372 MS.gene037068:CDS
GTATTATGATTCAAGCTCCG+CGG 0.725456 2.1:+52397313 MS.gene037068:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATCAATATTTATAT+TGG - chr2.1:52398627-52398646 None:intergenic 10.0%
!! ATATTGTTAATTAAGATATA+TGG + chr2.1:52397251-52397270 MS.gene037068:intron 10.0%
!! TAGTGAAAATTATTAATTAA+TGG - chr2.1:52397479-52397498 None:intergenic 10.0%
!!! ATATATTAGCTTTATTTTTT+AGG + chr2.1:52398826-52398845 MS.gene037068:intron 10.0%
!!! TTGATTTTTTATTATTTGTT+TGG + chr2.1:52397525-52397544 MS.gene037068:intron 10.0%
!!! TTTTAAAAGTAATTATAAGA+TGG - chr2.1:52398458-52398477 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTAAGTTG+GGG - chr2.1:52398151-52398170 None:intergenic 10.0%
!! ACTCTTAAAGTATAAAAATT+AGG - chr2.1:52398340-52398359 None:intergenic 15.0%
!! AGATAAAAAAAATAGATAGT+GGG + chr2.1:52398714-52398733 MS.gene037068:intron 15.0%
!! CTCTTAAAGTATAAAAATTA+GGG - chr2.1:52398339-52398358 None:intergenic 15.0%
!! TAGTTTGGATTAATATTATT+AGG - chr2.1:52397930-52397949 None:intergenic 15.0%
!!! AAAGATCTTTTGAAATTTAA+TGG - chr2.1:52398526-52398545 None:intergenic 15.0%
!!! ATCAATTTCTTTTTAATGAT+GGG + chr2.1:52397779-52397798 MS.gene037068:intron 15.0%
!!! CTAATATATTTTCTCTATTA+GGG - chr2.1:52398815-52398834 None:intergenic 15.0%
!!! TGTGTAATTAATTTGATATA+TGG + chr2.1:52399038-52399057 MS.gene037068:intron 15.0%
!!! TTTAATCTATATTTGTTGTT+GGG - chr2.1:52398900-52398919 None:intergenic 15.0%
!! ATGCTAAAAAAATAAATGTG+GGG + chr2.1:52398959-52398978 MS.gene037068:intron 20.0%
!! GAGATAAAAAAAATAGATAG+TGG + chr2.1:52398713-52398732 MS.gene037068:intron 20.0%
!! GATGCTAAAAAAATAAATGT+GGG + chr2.1:52398958-52398977 MS.gene037068:intron 20.0%
!! TAATTATAAGATGGTCATTA+CGG - chr2.1:52398449-52398468 None:intergenic 20.0%
!! TGATGCTAAAAAAATAAATG+TGG + chr2.1:52398957-52398976 MS.gene037068:intron 20.0%
!! TGGTTGTTAAAAAAAAAAAG+TGG - chr2.1:52398874-52398893 None:intergenic 20.0%
!! TTAAAAAGAAATTGATGTCA+TGG - chr2.1:52397775-52397794 None:intergenic 20.0%
!! TTAATTAAGATATATGGTTG+TGG + chr2.1:52397257-52397276 MS.gene037068:intron 20.0%
!! TTATAAATTGGTTATAAGCA+TGG - chr2.1:52398749-52398768 None:intergenic 20.0%
!!! AATTTTCACTACTCAATTTT+TGG + chr2.1:52397488-52397507 MS.gene037068:intron 20.0%
!!! ATTTTCACTACTCAATTTTT+GGG + chr2.1:52397489-52397508 MS.gene037068:intron 20.0%
!!! CATCAATTTCTTTTTAATGA+TGG + chr2.1:52397778-52397797 MS.gene037068:intron 20.0%
!!! CTTTAATCTATATTTGTTGT+TGG - chr2.1:52398901-52398920 None:intergenic 20.0%
!!! GCTAATATATTTTCTCTATT+AGG - chr2.1:52398816-52398835 None:intergenic 20.0%
!!! TGAATCTAAGATTAAGTTTA+TGG - chr2.1:52398364-52398383 None:intergenic 20.0%
!!! TTAATCTATATTTGTTGTTG+GGG - chr2.1:52398899-52398918 None:intergenic 20.0%
!!! TTTTTTAAACATGTTGTTAG+AGG + chr2.1:52397677-52397696 MS.gene037068:intron 20.0%
! AGATTAAAGAAGAAATTGCA+AGG + chr2.1:52398912-52398931 MS.gene037068:intron 25.0%
! AGTACGAAAGTAAATGAATT+TGG + chr2.1:52397558-52397577 MS.gene037068:intron 25.0%
! CAAAAATAAGACATTGTATG+AGG + chr2.1:52398585-52398604 MS.gene037068:intron 25.0%
! CAAACAATTATACCATATGA+TGG - chr2.1:52397741-52397760 None:intergenic 25.0%
! CATCATATGGTATAATTGTT+TGG + chr2.1:52397739-52397758 MS.gene037068:intron 25.0%
! GGATAAAGCTTCAATTATTA+AGG + chr2.1:52397824-52397843 MS.gene037068:CDS 25.0%
! TAAGGTGGTGATTTATAAAT+TGG - chr2.1:52398761-52398780 None:intergenic 25.0%
! TATAAATCACCACCTTAATA+AGG + chr2.1:52398764-52398783 MS.gene037068:intron 25.0%
! TCTTGATCAAAATCATAGTT+TGG - chr2.1:52397945-52397964 None:intergenic 25.0%
!! GTAAACATCACAAATTTTAG+TGG + chr2.1:52397452-52397471 MS.gene037068:intron 25.0%
!! TATATTGGAAATTTTTGCAC+AGG - chr2.1:52398612-52398631 None:intergenic 25.0%
!!! AATTTCTTTTTAATGATGGG+TGG + chr2.1:52397782-52397801 MS.gene037068:intron 25.0%
!!! AGATAATGGAACTTGAATTT+GGG + chr2.1:52397901-52397920 MS.gene037068:CDS 25.0%
!!! TAATCTATATTTGTTGTTGG+GGG - chr2.1:52398898-52398917 None:intergenic 25.0%
AAAGTGGATAAAGTCTGATT+TGG - chr2.1:52398858-52398877 None:intergenic 30.0%
ACACATGGAAGAGAATATAA+TGG + chr2.1:52399082-52399101 MS.gene037068:CDS 30.0%
ATGTTTACCTTGCTAATGTT+TGG - chr2.1:52397440-52397459 None:intergenic 30.0%
GGAAAATTTCAACCATCATA+TGG + chr2.1:52397726-52397745 MS.gene037068:intron 30.0%
TCACTTTGATTCAAGTATGA+AGG + chr2.1:52397196-52397215 MS.gene037068:intron 30.0%
TGATATTGTTACCTACATGT+TGG - chr2.1:52397170-52397189 None:intergenic 30.0%
TGTTTACCTTGCTAATGTTT+GGG - chr2.1:52397439-52397458 None:intergenic 30.0%
TTGATGTCTTTGACATCTAT+TGG + chr2.1:52397705-52397724 MS.gene037068:intron 30.0%
! TAATTGAAGCTTTATCCATC+TGG - chr2.1:52397821-52397840 None:intergenic 30.0%
!! GAGATAATGGAACTTGAATT+TGG + chr2.1:52397900-52397919 MS.gene037068:CDS 30.0%
AAAATAAATGTGGGGTGTGA+TGG + chr2.1:52398967-52398986 MS.gene037068:intron 35.0%
AATGGTAGACCTTATTAAGG+TGG - chr2.1:52398776-52398795 None:intergenic 35.0%
GAGCATGACATGTAACAAAA+GGG + chr2.1:52399109-52399128 MS.gene037068:CDS 35.0%
GCATCAATAATACAAGAGAG+AGG - chr2.1:52398943-52398962 None:intergenic 35.0%
GGTTATTCAAGCTGAGATAA+TGG + chr2.1:52397887-52397906 MS.gene037068:CDS 35.0%
TGAGCATGACATGTAACAAA+AGG + chr2.1:52399108-52399127 MS.gene037068:CDS 35.0%
TTGAAGTCCTTGAGGTAAAT+TGG + chr2.1:52398042-52398061 MS.gene037068:intron 35.0%
TTTACCTCAAGGACTTCAAT+TGG - chr2.1:52398041-52398060 None:intergenic 35.0%
!! CTGATTTGTTCTCTTCTTCT+TGG - chr2.1:52397988-52398007 None:intergenic 35.0%
AGAGATGATGATAGAGACAG+TGG - chr2.1:52398069-52398088 None:intergenic 40.0%
ATATATCCTCTTTCTCAGGC+AGG + chr2.1:52399195-52399214 MS.gene037068:intron 40.0%
ATATGGTTGAGTGCAGCTTA+GGG + chr2.1:52399055-52399074 MS.gene037068:intron 40.0%
ATATGGTTGTGGTTGCAGTT+GGG + chr2.1:52397268-52397287 MS.gene037068:intron 40.0%
CTAAGAACATTGTCTCTGAG+AGG + chr2.1:52397363-52397382 MS.gene037068:CDS 40.0%
CTTTCCAATTGAAGTCCTTG+AGG + chr2.1:52398034-52398053 MS.gene037068:CDS 40.0%
GAGATGATGATAGAGACAGT+GGG - chr2.1:52398068-52398087 None:intergenic 40.0%
GCCAATATATCCTCTTTCTC+AGG + chr2.1:52399191-52399210 MS.gene037068:intron 40.0%
GCCTGAGAAAGAGGATATAT+TGG - chr2.1:52399195-52399214 None:intergenic 40.0%
GGCAATGGTAGACCTTATTA+AGG - chr2.1:52398779-52398798 None:intergenic 40.0%
GTATTATGATTCAAGCTCCG+CGG + chr2.1:52397313-52397332 MS.gene037068:CDS 40.0%
TAACAAAAGGGCAGACACAA+TGG + chr2.1:52399121-52399140 MS.gene037068:CDS 40.0%
TATATGGTTGAGTGCAGCTT+AGG + chr2.1:52399054-52399073 MS.gene037068:intron 40.0%
TATATGGTTGTGGTTGCAGT+TGG + chr2.1:52397267-52397286 MS.gene037068:intron 40.0%
! GATTGGATGAGGCTTTAACA+GGG + chr2.1:52397291-52397310 MS.gene037068:CDS 40.0%
! GGTGACTTTCTTTTTCCAGA+TGG + chr2.1:52397803-52397822 MS.gene037068:intron 40.0%
! TTCTCTATTAGGGTACCTGA+TGG - chr2.1:52398805-52398824 None:intergenic 40.0%
!! CTATATTTGTTGTTGGGGGT+TGG - chr2.1:52398894-52398913 None:intergenic 40.0%
AGTCTTGCATGAGCAAGAGA+AGG + chr2.1:52397866-52397885 MS.gene037068:CDS 45.0%
AGTGGTCCCAAACATTAGCA+AGG + chr2.1:52397430-52397449 MS.gene037068:CDS 45.0%
ATCACTGAGCTCACAACTCA+TGG + chr2.1:52398209-52398228 MS.gene037068:intron 45.0%
TATGGTTGTGGTTGCAGTTG+GGG + chr2.1:52397269-52397288 MS.gene037068:intron 45.0%
TTCTTGGACCTTAGCAACAC+AGG - chr2.1:52397972-52397991 None:intergenic 45.0%
! AAGAGCTTCCTGTGTTGCTA+AGG + chr2.1:52397961-52397980 MS.gene037068:CDS 45.0%
! ACATTGTCTCTGAGAGGAAC+AGG + chr2.1:52397369-52397388 MS.gene037068:CDS 45.0%
! GGATTGGATGAGGCTTTAAC+AGG + chr2.1:52397290-52397309 MS.gene037068:CDS 45.0%
! TATTAGGGTACCTGATGGTG+TGG - chr2.1:52398800-52398819 None:intergenic 45.0%
! TTACCTACATGTTGGTCTCC+CGG - chr2.1:52397162-52397181 None:intergenic 45.0%
!! TAAAAAAAAAAAAAAAAAAG+AGG + chr2.1:52398156-52398175 MS.gene037068:intron 5.0%
!!! TTTTTTTTTTTTTTTAAGTT+GGG - chr2.1:52398152-52398171 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTAAGT+TGG - chr2.1:52398153-52398172 None:intergenic 5.0%
ACTCCTTGCACTTAGAGCAG+TGG + chr2.1:52397412-52397431 MS.gene037068:CDS 50.0%
CAGTGGGCCAATTTACCTCA+AGG - chr2.1:52398052-52398071 None:intergenic 50.0%
GCAGCTTAGGGTTACACACA+TGG + chr2.1:52399067-52399086 MS.gene037068:intron 50.0%
GTGCTGAGTACAACCCTTAC+CGG + chr2.1:52397140-52397159 MS.gene037068:CDS 50.0%
TATGATTCAAGCTCCGCGGA+TGG + chr2.1:52397317-52397336 MS.gene037068:CDS 50.0%
TCTACCATTGCCACACCATC+AGG + chr2.1:52398787-52398806 MS.gene037068:intron 50.0%
TGCTGAGTACAACCCTTACC+GGG + chr2.1:52397141-52397160 MS.gene037068:CDS 50.0%
TTACCGGGAGACCAACATGT+AGG + chr2.1:52397156-52397175 MS.gene037068:intron 50.0%
TTGCAGTTGGGGATTGGATG+AGG + chr2.1:52397280-52397299 MS.gene037068:intron 50.0%
TTGTGGTTGCAGTTGGGGAT+TGG + chr2.1:52397274-52397293 MS.gene037068:intron 50.0%
! ACATGTTGGTCTCCCGGTAA+GGG - chr2.1:52397156-52397175 None:intergenic 50.0%
! TACATGTTGGTCTCCCGGTA+AGG - chr2.1:52397157-52397176 None:intergenic 50.0%
! TTGTCTCTGAGAGGAACAGG+AGG + chr2.1:52397372-52397391 MS.gene037068:CDS 50.0%
CGAAAGCCTGCCTGAGAAAG+AGG - chr2.1:52399204-52399223 None:intergenic 55.0%
! GGACCACTGCTCTAAGTGCA+AGG - chr2.1:52397418-52397437 None:intergenic 55.0%
! GGTACCTGATGGTGTGGCAA+TGG - chr2.1:52398794-52398813 None:intergenic 55.0%
! TGATGATGCTGCACCATCCG+CGG - chr2.1:52397333-52397352 None:intergenic 55.0%
GCGGATGGTGCAGCATCATC+AGG + chr2.1:52397332-52397351 MS.gene037068:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 52397127 52399240 52397127 ID=MS.gene037068
chr2.1 mRNA 52397127 52399240 52397127 ID=MS.gene037068.t1;Parent=MS.gene037068
chr2.1 exon 52397127 52397173 52397127 ID=MS.gene037068.t1.exon1;Parent=MS.gene037068.t1
chr2.1 CDS 52397127 52397173 52397127 ID=cds.MS.gene037068.t1;Parent=MS.gene037068.t1
chr2.1 exon 52397286 52397451 52397286 ID=MS.gene037068.t1.exon2;Parent=MS.gene037068.t1
chr2.1 CDS 52397286 52397451 52397286 ID=cds.MS.gene037068.t1;Parent=MS.gene037068.t1
chr2.1 exon 52397822 52398055 52397822 ID=MS.gene037068.t1.exon3;Parent=MS.gene037068.t1
chr2.1 CDS 52397822 52398055 52397822 ID=cds.MS.gene037068.t1;Parent=MS.gene037068.t1
chr2.1 exon 52399071 52399142 52399071 ID=MS.gene037068.t1.exon4;Parent=MS.gene037068.t1
chr2.1 CDS 52399071 52399142 52399071 ID=cds.MS.gene037068.t1;Parent=MS.gene037068.t1
chr2.1 exon 52399217 52399240 52399217 ID=MS.gene037068.t1.exon5;Parent=MS.gene037068.t1
chr2.1 CDS 52399217 52399240 52399217 ID=cds.MS.gene037068.t1;Parent=MS.gene037068.t1
Gene Sequence

>MS.gene037068

ATGGAGAACATTGGTGCTGAGTACAACCCTTACCGGGAGACCAACATGTAGGTAACAATATCATTTAATTCACTTTGATTCAAGTATGAAGGTACAATTAGTGAAATTAAATTAATTATAATTAATATTGTTAATTAAGATATATGGTTGTGGTTGCAGTTGGGGATTGGATGAGGCTTTAACAGGGTATTATGATTCAAGCTCCGCGGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGTCTCTGAGAGGAACAGGAGGAATAAGCTTAATGAAAGACTCCTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGGTAAACATCACAAATTTTAGTGGTCCATTAATTAATAATTTTCACTACTCAATTTTTGGGTGCAATTTTGCTGTTGATTTTTTATTATTTGTTTGGATAAAATATAAGTACGAAAGTAAATGAATTTGGTTCATATTTAGACTATATATACATGTATTGTTTTGCTTATATTTTATTACAGATAGAGTAATTAATATTATGTGACACAGTGAATAAGTAATTTAATTTTTTAAACATGTTGTTAGAGGTTTGATTGATGTCTTTGACATCTATTGGAAAATTTCAACCATCATATGGTATAATTGTTTGGAATGATTAGTCCATGACATCAATTTCTTTTTAATGATGGGTGGTGACTTTCTTTTTCCAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATACAAGTCTTGCATGAGCAAGAGAAGGTTATTCAAGCTGAGATAATGGAACTTGAATTTGGGATGCCTAATAATATTAATCCAAACTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAAATCAGTTATATGATTCTATCAGTACAAGAAACTTTCCAATTGAAGTCCTTGAGGTAAATTGGCCCACTGTCTCTATCATCATCTCTTTCTGTTTCTTGAAATTTTTTAAGAATCAAAATGAACGAATACATTAAGAAATAGTATTCCCCAACTTAAAAAAAAAAAAAAAAAAGAGGAGATAGATAAATTATTATTATTAAATTGTTATCACTGAGCTCACAACTCATGGACAAACGACTCAAAAACAACTTAGTTCAAAAAAGAGAAAATCAAAGAGCACAAAACTATTTTTTTATAAGCAAACAATATTTAAATTAAAATAGTACAAACATACCCTAATTTTTATACTTTAAGAGTACCATAAACTTAATCTTAGATTCACACATCATTAATTTTAATAAAATAATTAAAGAAGAAGAAAATCATCACTAATTAAAGTGACACCGTAATGACCATCTTATAATTACTTTTAAAAGAATTTAAATTTTATTTGTTGTAAATTACAAAGTCGAATCTCATACCATTAAATTTCAAAAGATCTTTACATTATTTATAAAACGAACAATGATATTTAATTAAACACAAAAATAAGACATTGTATGAGGACCTGTGCAAAAATTTCCAATATAAATATTGATTTGATTAGAAGACAGAAAAAATAATTAAAAATAATGTAAATGAAATATAATTTCTCTAATAAAATAGATAGTGAGATAAAAAAAATAGATAGTGGGATTTTCAAACCATGCTTATAACCAATTTATAAATCACCACCTTAATAAGGTCTACCATTGCCACACCATCAGGTACCCTAATAGAGAAAATATATTAGCTTTATTTTTTAGGTTCATACCAAATCAGACTTTATCCACTTTTTTTTTTTAACAACCAACCCCCAACAACAAATATAGATTAAAGAAGAAATTGCAAGGCATCACCTCTCTCTTGTATTATTGATGCTAAAAAAATAAATGTGGGGTGTGATGGTTATAACTTTATAATTATCTTTGAATTTCTAAAGTAATTAATTATGAGTGTGTAATTAATTTGATATATGGTTGAGTGCAGCTTAGGGTTACACACATGGAAGAGAATATAATGGTAGTGAGCATGACATGTAACAAAAGGGCAGACACAATGGTAAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTCAAAATTATTACTGCCAATATATCCTCTTTCTCAGGCAGGCTTTCGAAGACAGTCTTCATTGA
Protein sequence

>MS.gene037068.t1

MENIGAEYNPYRETNIWGLDEALTGYYDSSSADGAASSGVSSKNIVSERNRRNKLNERLLALRAVVPNISKMDKASIIKDAIEYIQVLHEQEKVIQAEIMELEFGMPNNINPNYDFDQELPVLLRSKKKRTNQLYDSISTRNFPIEVLELRVTHMEENIMVVSMTCNKRADTMAFEDSLH