Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03707.t1 | XP_003606331.2 | 92.8 | 279 | 11 | 1 | 16 | 285 | 57 | 335 | 2.70E-111 | 411.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03707.t1 | Q0V7X4 | 58.9 | 175 | 61 | 3 | 120 | 283 | 143 | 317 | 2.4e-44 | 180.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03707.t1 | G7JN98 | 92.8 | 279 | 11 | 1 | 16 | 285 | 57 | 335 | 1.9e-111 | 411.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene03707.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03707.t1 | MTR_4g057270 | 92.857 | 280 | 11 | 1 | 15 | 285 | 56 | 335 | 7.94e-174 | 483 |
| MS.gene03707.t1 | MTR_2g084280 | 61.620 | 284 | 80 | 9 | 17 | 283 | 42 | 313 | 1.47e-103 | 305 |
| MS.gene03707.t1 | MTR_3g030700 | 29.648 | 199 | 112 | 5 | 94 | 272 | 182 | 372 | 2.06e-17 | 81.6 |
| MS.gene03707.t1 | MTR_8g064700 | 30.526 | 190 | 104 | 6 | 99 | 269 | 235 | 415 | 2.39e-17 | 81.6 |
| MS.gene03707.t1 | MTR_2g038040 | 52.308 | 65 | 31 | 0 | 107 | 171 | 51 | 115 | 4.23e-16 | 76.3 |
| MS.gene03707.t1 | MTR_1g112680 | 53.226 | 62 | 29 | 0 | 103 | 164 | 312 | 373 | 4.36e-16 | 78.6 |
| MS.gene03707.t1 | MTR_3g104100 | 32.927 | 164 | 86 | 5 | 107 | 252 | 194 | 351 | 2.72e-15 | 75.5 |
| MS.gene03707.t1 | MTR_8g067280 | 29.310 | 174 | 100 | 4 | 101 | 252 | 452 | 624 | 2.82e-15 | 76.3 |
| MS.gene03707.t1 | MTR_3g498695 | 37.864 | 103 | 58 | 1 | 72 | 174 | 268 | 364 | 2.99e-15 | 75.9 |
| MS.gene03707.t1 | MTR_3g498695 | 37.864 | 103 | 58 | 1 | 72 | 174 | 268 | 364 | 3.05e-15 | 75.9 |
| MS.gene03707.t1 | MTR_2g081040 | 51.724 | 58 | 28 | 0 | 107 | 164 | 176 | 233 | 5.03e-14 | 71.6 |
| MS.gene03707.t1 | MTR_5g030430 | 32.895 | 152 | 78 | 5 | 112 | 242 | 497 | 645 | 9.66e-14 | 71.6 |
| MS.gene03707.t1 | MTR_4g091910 | 31.410 | 156 | 85 | 5 | 107 | 250 | 46 | 191 | 1.27e-13 | 68.6 |
| MS.gene03707.t1 | MTR_7g083900 | 53.448 | 58 | 27 | 0 | 107 | 164 | 285 | 342 | 1.90e-13 | 70.5 |
| MS.gene03707.t1 | MTR_7g083900 | 53.448 | 58 | 27 | 0 | 107 | 164 | 285 | 342 | 1.91e-13 | 70.5 |
| MS.gene03707.t1 | MTR_8g027495 | 51.923 | 52 | 25 | 0 | 112 | 163 | 462 | 513 | 3.67e-13 | 69.7 |
| MS.gene03707.t1 | MTR_7g117670 | 51.923 | 52 | 25 | 0 | 112 | 163 | 406 | 457 | 6.57e-13 | 68.9 |
| MS.gene03707.t1 | MTR_8g024790 | 35.294 | 102 | 57 | 1 | 70 | 162 | 244 | 345 | 4.95e-12 | 66.2 |
| MS.gene03707.t1 | MTR_0250s0040 | 30.201 | 149 | 75 | 5 | 40 | 175 | 25 | 157 | 1.19e-11 | 63.9 |
| MS.gene03707.t1 | MTR_8g024770 | 36.458 | 96 | 52 | 2 | 75 | 161 | 237 | 332 | 2.11e-11 | 64.3 |
| MS.gene03707.t1 | MTR_7g096350 | 43.939 | 66 | 34 | 1 | 101 | 163 | 345 | 410 | 3.73e-11 | 63.5 |
| MS.gene03707.t1 | MTR_4g091990 | 28.671 | 143 | 86 | 4 | 107 | 247 | 44 | 172 | 4.19e-11 | 61.6 |
| MS.gene03707.t1 | MTR_4g097950 | 30.147 | 136 | 74 | 3 | 110 | 227 | 72 | 204 | 4.35e-11 | 62.4 |
| MS.gene03707.t1 | MTR_1g019240 | 44.615 | 65 | 32 | 1 | 100 | 160 | 83 | 147 | 4.55e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03707.t1 | AT2G28160 | 55.785 | 242 | 81 | 6 | 58 | 283 | 86 | 317 | 4.76e-75 | 232 |
| MS.gene03707.t1 | AT2G28160 | 54.661 | 236 | 81 | 6 | 58 | 277 | 86 | 311 | 1.48e-70 | 220 |
| MS.gene03707.t1 | AT5G57150 | 38.217 | 157 | 78 | 5 | 107 | 246 | 54 | 208 | 9.51e-21 | 88.6 |
| MS.gene03707.t1 | AT5G57150 | 38.217 | 157 | 78 | 5 | 107 | 246 | 53 | 207 | 1.05e-20 | 88.6 |
| MS.gene03707.t1 | AT5G57150 | 38.217 | 157 | 78 | 5 | 107 | 246 | 54 | 208 | 1.06e-20 | 88.6 |
| MS.gene03707.t1 | AT5G57150 | 38.217 | 157 | 78 | 5 | 107 | 246 | 53 | 207 | 1.58e-20 | 88.6 |
| MS.gene03707.t1 | AT5G57150 | 33.333 | 192 | 109 | 5 | 72 | 246 | 19 | 208 | 2.21e-20 | 88.6 |
| MS.gene03707.t1 | AT4G29930 | 35.664 | 143 | 74 | 4 | 107 | 239 | 53 | 187 | 3.43e-18 | 81.6 |
| MS.gene03707.t1 | AT4G29930 | 33.516 | 182 | 77 | 5 | 107 | 252 | 53 | 226 | 6.69e-18 | 81.6 |
| MS.gene03707.t1 | AT4G29930 | 33.516 | 182 | 77 | 5 | 107 | 252 | 53 | 226 | 6.69e-18 | 81.6 |
| MS.gene03707.t1 | AT2G16910 | 33.526 | 173 | 80 | 6 | 106 | 244 | 312 | 483 | 1.19e-17 | 83.2 |
| MS.gene03707.t1 | AT4G29930 | 34.320 | 169 | 67 | 5 | 107 | 239 | 53 | 213 | 1.29e-17 | 80.9 |
| MS.gene03707.t1 | AT4G29930 | 34.194 | 155 | 83 | 4 | 107 | 252 | 53 | 197 | 1.38e-17 | 80.1 |
| MS.gene03707.t1 | AT4G29930 | 35.211 | 142 | 73 | 4 | 107 | 239 | 53 | 184 | 3.01e-17 | 79.0 |
| MS.gene03707.t1 | AT4G29930 | 40.909 | 110 | 47 | 2 | 107 | 205 | 53 | 155 | 4.00e-17 | 77.8 |
| MS.gene03707.t1 | AT1G01260 | 30.435 | 207 | 105 | 6 | 50 | 248 | 383 | 558 | 2.78e-16 | 79.0 |
| MS.gene03707.t1 | AT1G01260 | 30.435 | 207 | 105 | 6 | 50 | 248 | 383 | 558 | 2.78e-16 | 79.0 |
| MS.gene03707.t1 | AT1G01260 | 30.435 | 207 | 105 | 6 | 50 | 248 | 383 | 558 | 2.78e-16 | 79.0 |
| MS.gene03707.t1 | AT2G46510 | 48.101 | 79 | 38 | 1 | 101 | 176 | 385 | 463 | 2.48e-15 | 76.3 |
| MS.gene03707.t1 | AT4G17880 | 30.719 | 153 | 94 | 4 | 101 | 242 | 406 | 557 | 1.49e-14 | 73.9 |
| MS.gene03707.t1 | AT5G46760 | 30.769 | 143 | 86 | 3 | 112 | 242 | 419 | 560 | 7.51e-14 | 72.0 |
| MS.gene03707.t1 | AT1G12860 | 51.724 | 58 | 28 | 0 | 107 | 164 | 266 | 323 | 1.26e-13 | 70.9 |
| MS.gene03707.t1 | AT1G12860 | 51.724 | 58 | 28 | 0 | 107 | 164 | 266 | 323 | 1.45e-13 | 70.9 |
| MS.gene03707.t1 | AT3G26744 | 51.724 | 58 | 28 | 0 | 107 | 164 | 306 | 363 | 2.38e-13 | 70.1 |
| MS.gene03707.t1 | AT3G26744 | 51.724 | 58 | 28 | 0 | 107 | 164 | 306 | 363 | 2.40e-13 | 70.1 |
| MS.gene03707.t1 | AT3G26744 | 51.724 | 58 | 28 | 0 | 107 | 164 | 306 | 363 | 2.40e-13 | 70.1 |
| MS.gene03707.t1 | AT3G26744 | 51.724 | 58 | 28 | 0 | 107 | 164 | 306 | 363 | 2.40e-13 | 70.1 |
| MS.gene03707.t1 | AT1G10610 | 35.897 | 117 | 68 | 3 | 102 | 215 | 161 | 273 | 6.19e-13 | 68.6 |
| MS.gene03707.t1 | AT1G10610 | 35.897 | 117 | 68 | 3 | 102 | 215 | 228 | 340 | 8.94e-13 | 68.2 |
| MS.gene03707.t1 | AT1G10610 | 35.897 | 117 | 68 | 3 | 102 | 215 | 258 | 370 | 9.45e-13 | 68.6 |
| MS.gene03707.t1 | AT1G32640 | 43.939 | 66 | 34 | 1 | 101 | 163 | 442 | 507 | 6.06e-12 | 66.2 |
| MS.gene03707.t1 | AT4G16430 | 28.387 | 155 | 88 | 6 | 101 | 250 | 310 | 446 | 1.12e-11 | 65.1 |
| MS.gene03707.t1 | AT4G21330 | 26.702 | 191 | 122 | 5 | 76 | 254 | 4 | 188 | 1.88e-11 | 62.8 |
Find 48 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTCTGCTTTAAGTTTCT+TGG | 0.143972 | 4.3:-43876482 | None:intergenic |
| CAATGTTCAGAATTCAAATT+TGG | 0.160318 | 4.3:+43876836 | MS.gene03707:CDS |
| AAATTTGGCAGGTTGATTTC+TGG | 0.184628 | 4.3:-43877196 | None:intergenic |
| CAAAACTTTGATTCATTATA+AGG | 0.232350 | 4.3:-43875621 | None:intergenic |
| AATTGATCCTTGATGAGTTT+TGG | 0.235753 | 4.3:-43876533 | None:intergenic |
| ATCACCCATAGCTTTAAATT+TGG | 0.237169 | 4.3:-43877211 | None:intergenic |
| GCTTTACGCGTTGCGTTCTT+TGG | 0.241601 | 4.3:+43875936 | MS.gene03707:CDS |
| ATGGATAAGGCTTCTATAAT+TGG | 0.273912 | 4.3:+43876421 | MS.gene03707:CDS |
| TGTTAAAATAGTATGCAATA+AGG | 0.282684 | 4.3:+43876761 | MS.gene03707:CDS |
| GGTCAGAATTGATCAAAGTT+TGG | 0.342144 | 4.3:-43875600 | None:intergenic |
| AAGTGTACCTTAGTTATATT+CGG | 0.351526 | 4.3:-43875961 | None:intergenic |
| TTATCTATGTTGTGATCAAA+TGG | 0.384556 | 4.3:-43875676 | None:intergenic |
| ACCTGCCAAATTTAAAGCTA+TGG | 0.396521 | 4.3:+43877206 | MS.gene03707:CDS |
| AAACTTAAAGCAGAGGTTGC+AGG | 0.414303 | 4.3:+43876487 | MS.gene03707:CDS |
| GTTAAAATAGTATGCAATAA+GGG | 0.416472 | 4.3:+43876762 | MS.gene03707:CDS |
| ATTACATGTATAGATGGATA+AGG | 0.424502 | 4.3:+43876408 | MS.gene03707:intron |
| CCCATAGCTTTAAATTTGGC+AGG | 0.425488 | 4.3:-43877207 | None:intergenic |
| CGTAAAGCTTATCCTTCATT+CGG | 0.438602 | 4.3:-43875921 | None:intergenic |
| TTTGGTTCCGAATATAACTA+AGG | 0.446475 | 4.3:+43875954 | MS.gene03707:CDS |
| TTTGATCCTACTTCTTCACT+TGG | 0.449750 | 4.3:+43875715 | MS.gene03707:CDS |
| AAGGTATGAATTCAAAGCCT+TGG | 0.451801 | 4.3:-43877249 | None:intergenic |
| TGAAAATAGGTGAAAGACTC+TGG | 0.451976 | 4.3:+43877172 | MS.gene03707:intron |
| TAGTATGCAATAAGGGAGAA+AGG | 0.463194 | 4.3:+43876769 | MS.gene03707:CDS |
| AATATGCAAGAAAATTGTCC+AGG | 0.466755 | 4.3:+43876597 | MS.gene03707:CDS |
| CTTTGGTTTCTGAGAGGAGG+AGG | 0.467532 | 4.3:+43875893 | MS.gene03707:CDS |
| AAATGATAGATCCAAGACTT+TGG | 0.473297 | 4.3:+43875876 | MS.gene03707:CDS |
| ATGTTGTGATCAAATGGGTT+TGG | 0.479555 | 4.3:-43875670 | None:intergenic |
| AATTTGGCCACTGTTTCTGA+TGG | 0.483700 | 4.3:+43876852 | MS.gene03707:CDS |
| TATCTATGTTGTGATCAAAT+GGG | 0.486497 | 4.3:-43875675 | None:intergenic |
| CCTCTCAGAAACCAAAGTCT+TGG | 0.490550 | 4.3:-43875887 | None:intergenic |
| ATGTGTCAAGCGTGAAAAGA+AGG | 0.518768 | 4.3:-43877268 | None:intergenic |
| AGTATGCAATAAGGGAGAAA+GGG | 0.525003 | 4.3:+43876770 | MS.gene03707:CDS |
| CCTGCCAAATTTAAAGCTAT+GGG | 0.525800 | 4.3:+43877207 | MS.gene03707:CDS |
| AAAGAACCAAGTGAAGAAGT+AGG | 0.527298 | 4.3:-43875721 | None:intergenic |
| TGTTGTTGTTGTTGCAGGAG+AGG | 0.530649 | 4.3:-43875806 | None:intergenic |
| GAGGAGGCGAAGCCGAATGA+AGG | 0.530731 | 4.3:+43875909 | MS.gene03707:CDS |
| ATCACCACTTGTAGTTGTTG+TGG | 0.544215 | 4.3:-43875836 | None:intergenic |
| TTGTGATCAAATGGGTTTGG+AGG | 0.546978 | 4.3:-43875667 | None:intergenic |
| AGACTTTGGTTTCTGAGAGG+AGG | 0.567716 | 4.3:+43875890 | MS.gene03707:CDS |
| GAAATAAGAGTAGAAAATGA+TGG | 0.570766 | 4.3:+43875772 | MS.gene03707:CDS |
| ATTCAATTTACTAACAACAA+TGG | 0.579590 | 4.3:+43876571 | MS.gene03707:CDS |
| GCAGTGTCCAAAACTCATCA+AGG | 0.579680 | 4.3:+43876526 | MS.gene03707:CDS |
| CCAAGACTTTGGTTTCTGAG+AGG | 0.603254 | 4.3:+43875887 | MS.gene03707:CDS |
| AGCCAAGAAACTTAAAGCAG+AGG | 0.613756 | 4.3:+43876480 | MS.gene03707:CDS |
| ATTACCACAACAACTACAAG+TGG | 0.626061 | 4.3:+43875832 | MS.gene03707:CDS |
| ATGGGTTTGGAGGAAATGAA+AGG | 0.630120 | 4.3:-43875657 | None:intergenic |
| TAGAAAACCATCAGAAACAG+TGG | 0.631132 | 4.3:-43876859 | None:intergenic |
| ATGCAATAAGGGAGAAAGGG+TGG | 0.649433 | 4.3:+43876773 | MS.gene03707:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTTAACCTTAAATAG+AGG | - | chr4.3:43876916-43876935 | None:intergenic | 15.0% |
| !! | TATATTTAACCTTAAATAGA+GGG | - | chr4.3:43876915-43876934 | None:intergenic | 15.0% |
| !! | TATTTAATTACATGTATAGA+TGG | + | chr4.3:43876402-43876421 | MS.gene03707:intron | 15.0% |
| !!! | AAACAAAATTACATGATTTT+AGG | + | chr4.3:43877001-43877020 | MS.gene03707:intron | 15.0% |
| !!! | TAACATCATTTTTTTTTGAA+GGG | - | chr4.3:43876254-43876273 | None:intergenic | 15.0% |
| !!! | TTAGTAAATTGAATCTTTTT+GGG | - | chr4.3:43876565-43876584 | None:intergenic | 15.0% |
| !!! | TTTTTATTACCATAACATTT+AGG | - | chr4.3:43877088-43877107 | None:intergenic | 15.0% |
| !! | ATTCAATTTACTAACAACAA+TGG | + | chr4.3:43876571-43876590 | MS.gene03707:CDS | 20.0% |
| !! | CAAAACTTTGATTCATTATA+AGG | - | chr4.3:43875624-43875643 | None:intergenic | 20.0% |
| !! | CAGATAATGAAATAGAATAA+TGG | - | chr4.3:43877121-43877140 | None:intergenic | 20.0% |
| !! | CTAAAAAAACCTAAATGTTA+TGG | + | chr4.3:43877076-43877095 | MS.gene03707:intron | 20.0% |
| !! | GTTAAAATAGTATGCAATAA+GGG | + | chr4.3:43876762-43876781 | MS.gene03707:CDS | 20.0% |
| !! | TGTTAAAATAGTATGCAATA+AGG | + | chr4.3:43876761-43876780 | MS.gene03707:CDS | 20.0% |
| !!! | AACATCATTTTTTTTTGAAG+GGG | - | chr4.3:43876253-43876272 | None:intergenic | 20.0% |
| !!! | CTTCAAAGTATTTTATATTG+CGG | + | chr4.3:43876074-43876093 | MS.gene03707:intron | 20.0% |
| !!! | GTAACATCATTTTTTTTTGA+AGG | - | chr4.3:43876255-43876274 | None:intergenic | 20.0% |
| !!! | GTTAGTAAATTGAATCTTTT+TGG | - | chr4.3:43876566-43876585 | None:intergenic | 20.0% |
| !!! | TAGTAAATTGAATCTTTTTG+GGG | - | chr4.3:43876564-43876583 | None:intergenic | 20.0% |
| ! | AAGTGTACCTTAGTTATATT+CGG | - | chr4.3:43875964-43875983 | None:intergenic | 25.0% |
| ! | AATGATGTTACTATCCAAAA+TGG | + | chr4.3:43876264-43876283 | MS.gene03707:intron | 25.0% |
| ! | AGATATTTATCAAACAAACC+TGG | - | chr4.3:43876618-43876637 | None:intergenic | 25.0% |
| ! | ATGCTTGTATCAAATTTACA+AGG | - | chr4.3:43876299-43876318 | None:intergenic | 25.0% |
| ! | ATTACATGTATAGATGGATA+AGG | + | chr4.3:43876408-43876427 | MS.gene03707:intron | 25.0% |
| ! | ATTTGTAACATCTTTGAATG+TGG | + | chr4.3:43876694-43876713 | MS.gene03707:intron | 25.0% |
| ! | CAATGTTCAGAATTCAAATT+TGG | + | chr4.3:43876836-43876855 | MS.gene03707:CDS | 25.0% |
| ! | CATGCTTATTATGTGAAAAT+AGG | + | chr4.3:43877159-43877178 | MS.gene03707:intron | 25.0% |
| ! | GAAATAAGAGTAGAAAATGA+TGG | + | chr4.3:43875772-43875791 | MS.gene03707:CDS | 25.0% |
| ! | TATCTATGTTGTGATCAAAT+GGG | - | chr4.3:43875678-43875697 | None:intergenic | 25.0% |
| ! | TTATCTATGTTGTGATCAAA+TGG | - | chr4.3:43875679-43875698 | None:intergenic | 25.0% |
| !! | ATTTTAAATAGCGATCATCA+AGG | - | chr4.3:43876103-43876122 | None:intergenic | 25.0% |
| !! | TATAACTAAGGTACACTTTT+TGG | + | chr4.3:43875966-43875985 | MS.gene03707:intron | 25.0% |
| !!! | GTAATTTTGTTTTGTAGAGA+CGG | - | chr4.3:43876993-43877012 | None:intergenic | 25.0% |
| !!! | TTGGTTTTAAATTGTTGTTG+TGG | + | chr4.3:43875985-43876004 | MS.gene03707:intron | 25.0% |
| AAATGATAGATCCAAGACTT+TGG | + | chr4.3:43875876-43875895 | MS.gene03707:CDS | 30.0% | |
| AAATTTCTCGTGATACCATT+AGG | + | chr4.3:43876047-43876066 | MS.gene03707:intron | 30.0% | |
| AATATGCAAGAAAATTGTCC+AGG | + | chr4.3:43876597-43876616 | MS.gene03707:CDS | 30.0% | |
| AATTCGTAGAGACTAAAAAG+TGG | + | chr4.3:43877045-43877064 | MS.gene03707:intron | 30.0% | |
| AATTTCTCGTGATACCATTA+GGG | + | chr4.3:43876048-43876067 | MS.gene03707:intron | 30.0% | |
| AGCTATATTCCCTCTATTTA+AGG | + | chr4.3:43876903-43876922 | MS.gene03707:intron | 30.0% | |
| ATGGATAAGGCTTCTATAAT+TGG | + | chr4.3:43876421-43876440 | MS.gene03707:CDS | 30.0% | |
| GTAGATTGATATGTTTCAAG+TGG | + | chr4.3:43876723-43876742 | MS.gene03707:intron | 30.0% | |
| ! | AATTGATCCTTGATGAGTTT+TGG | - | chr4.3:43876536-43876555 | None:intergenic | 30.0% |
| ! | TTTGGTTCCGAATATAACTA+AGG | + | chr4.3:43875954-43875973 | MS.gene03707:CDS | 30.0% |
| !! | ATCACCCATAGCTTTAAATT+TGG | - | chr4.3:43877214-43877233 | None:intergenic | 30.0% |
| !! | GAGAAATTTTGACGGTATTT+TGG | - | chr4.3:43876036-43876055 | None:intergenic | 30.0% |
| !! | GATCTATCATTTTTCGACTT+TGG | - | chr4.3:43875868-43875887 | None:intergenic | 30.0% |
| !!! | CTTCACACTTTTTTTTTCGA+AGG | + | chr4.3:43876198-43876217 | MS.gene03707:intron | 30.0% |
| AAAGAACCAAGTGAAGAAGT+AGG | - | chr4.3:43875724-43875743 | None:intergenic | 35.0% | |
| AAGGTATGAATTCAAAGCCT+TGG | - | chr4.3:43877252-43877271 | None:intergenic | 35.0% | |
| AGTATGCAATAAGGGAGAAA+GGG | + | chr4.3:43876770-43876789 | MS.gene03707:CDS | 35.0% | |
| ATTACCACAACAACTACAAG+TGG | + | chr4.3:43875832-43875851 | MS.gene03707:CDS | 35.0% | |
| CGTAAAGCTTATCCTTCATT+CGG | - | chr4.3:43875924-43875943 | None:intergenic | 35.0% | |
| GGTCAGAATTGATCAAAGTT+TGG | - | chr4.3:43875603-43875622 | None:intergenic | 35.0% | |
| TAGAAAACCATCAGAAACAG+TGG | - | chr4.3:43876862-43876881 | None:intergenic | 35.0% | |
| TAGTATGCAATAAGGGAGAA+AGG | + | chr4.3:43876769-43876788 | MS.gene03707:CDS | 35.0% | |
| TGAAAATAGGTGAAAGACTC+TGG | + | chr4.3:43877172-43877191 | MS.gene03707:intron | 35.0% | |
| TTAAATAGCGATCATCAAGG+TGG | - | chr4.3:43876100-43876119 | None:intergenic | 35.0% | |
| TTTGATCCTACTTCTTCACT+TGG | + | chr4.3:43875715-43875734 | MS.gene03707:CDS | 35.0% | |
| ! | AACCTCTGCTTTAAGTTTCT+TGG | - | chr4.3:43876485-43876504 | None:intergenic | 35.0% |
| ! | ACCTGCCAAATTTAAAGCTA+TGG | + | chr4.3:43877206-43877225 | MS.gene03707:CDS | 35.0% |
| ! | ATCAGTGCTTTTCTAAACCA+AGG | + | chr4.3:43877232-43877251 | MS.gene03707:CDS | 35.0% |
| ! | ATGTTGTGATCAAATGGGTT+TGG | - | chr4.3:43875673-43875692 | None:intergenic | 35.0% |
| ! | ATGTTTCAAGTGGATGAAAG+AGG | + | chr4.3:43876733-43876752 | MS.gene03707:intron | 35.0% |
| ! | CAAGGCTAATCTAACCATTT+TGG | - | chr4.3:43876281-43876300 | None:intergenic | 35.0% |
| ! | CCTGCCAAATTTAAAGCTAT+GGG | + | chr4.3:43877207-43877226 | MS.gene03707:CDS | 35.0% |
| ! | GGTATCACGAGAAATTTTGA+CGG | - | chr4.3:43876044-43876063 | None:intergenic | 35.0% |
| !! | AAATTTGGCAGGTTGATTTC+TGG | - | chr4.3:43877199-43877218 | None:intergenic | 35.0% |
| !! | ATACTTTGAAGTCTCCCTAA+TGG | - | chr4.3:43876065-43876084 | None:intergenic | 35.0% |
| !!! | GGTATTTTGGCGCAATATAA+AGG | - | chr4.3:43876023-43876042 | None:intergenic | 35.0% |
| !!! | GGTTCTTTCTCTTGTTTTGA+TGG | + | chr4.3:43875736-43875755 | MS.gene03707:CDS | 35.0% |
| !!! | TGTTTTGATGGAGAAGCTAA+GGG | + | chr4.3:43875748-43875767 | MS.gene03707:CDS | 35.0% |
| !!! | TTGTTTTGATGGAGAAGCTA+AGG | + | chr4.3:43875747-43875766 | MS.gene03707:CDS | 35.0% |
| AAACTTAAAGCAGAGGTTGC+AGG | + | chr4.3:43876487-43876506 | MS.gene03707:CDS | 40.0% | |
| AGCCAAGAAACTTAAAGCAG+AGG | + | chr4.3:43876480-43876499 | MS.gene03707:CDS | 40.0% | |
| ATCACCACTTGTAGTTGTTG+TGG | - | chr4.3:43875839-43875858 | None:intergenic | 40.0% | |
| ATGGGTTTGGAGGAAATGAA+AGG | - | chr4.3:43875660-43875679 | None:intergenic | 40.0% | |
| ! | GTTTTGTAGAGACGGAAAAG+TGG | - | chr4.3:43876985-43877004 | None:intergenic | 40.0% |
| ! | TTGTGATCAAATGGGTTTGG+AGG | - | chr4.3:43875670-43875689 | None:intergenic | 40.0% |
| ! | TTTTGATGGAGAAGCTAAGG+GGG | + | chr4.3:43875750-43875769 | MS.gene03707:CDS | 40.0% |
| !! | AATTTGGCCACTGTTTCTGA+TGG | + | chr4.3:43876852-43876871 | MS.gene03707:CDS | 40.0% |
| !! | ATGCTTGTTGTTGTTGTTGC+AGG | - | chr4.3:43875814-43875833 | None:intergenic | 40.0% |
| !! | CCCATAGCTTTAAATTTGGC+AGG | - | chr4.3:43877210-43877229 | None:intergenic | 40.0% |
| !! | GTTTTGATGGAGAAGCTAAG+GGG | + | chr4.3:43875749-43875768 | MS.gene03707:CDS | 40.0% |
| ATGCAATAAGGGAGAAAGGG+TGG | + | chr4.3:43876773-43876792 | MS.gene03707:CDS | 45.0% | |
| CCTCTCAGAAACCAAAGTCT+TGG | - | chr4.3:43875890-43875909 | None:intergenic | 45.0% | |
| GCAGTGTCCAAAACTCATCA+AGG | + | chr4.3:43876526-43876545 | MS.gene03707:CDS | 45.0% | |
| ! | AGACTTTGGTTTCTGAGAGG+AGG | + | chr4.3:43875890-43875909 | MS.gene03707:CDS | 45.0% |
| ! | CCAAGACTTTGGTTTCTGAG+AGG | + | chr4.3:43875887-43875906 | MS.gene03707:CDS | 45.0% |
| ! | TGTTGTTGTTGTTGCAGGAG+AGG | - | chr4.3:43875809-43875828 | None:intergenic | 45.0% |
| GCTTTACGCGTTGCGTTCTT+TGG | + | chr4.3:43875936-43875955 | MS.gene03707:CDS | 50.0% | |
| ! | CTTTGGTTTCTGAGAGGAGG+AGG | + | chr4.3:43875893-43875912 | MS.gene03707:CDS | 50.0% |
| GAGGAGGCGAAGCCGAATGA+AGG | + | chr4.3:43875909-43875928 | MS.gene03707:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 43875568 | 43877285 | 43875568 | ID=MS.gene03707 |
| chr4.3 | mRNA | 43875568 | 43877285 | 43875568 | ID=MS.gene03707.t1;Parent=MS.gene03707 |
| chr4.3 | exon | 43875568 | 43875975 | 43875568 | ID=MS.gene03707.t1.exon1;Parent=MS.gene03707.t1 |
| chr4.3 | CDS | 43875568 | 43875975 | 43875568 | ID=cds.MS.gene03707.t1;Parent=MS.gene03707.t1 |
| chr4.3 | exon | 43876421 | 43876618 | 43876421 | ID=MS.gene03707.t1.exon2;Parent=MS.gene03707.t1 |
| chr4.3 | CDS | 43876421 | 43876618 | 43876421 | ID=cds.MS.gene03707.t1;Parent=MS.gene03707.t1 |
| chr4.3 | exon | 43876753 | 43876899 | 43876753 | ID=MS.gene03707.t1.exon3;Parent=MS.gene03707.t1 |
| chr4.3 | CDS | 43876753 | 43876899 | 43876753 | ID=cds.MS.gene03707.t1;Parent=MS.gene03707.t1 |
| chr4.3 | exon | 43877181 | 43877285 | 43877181 | ID=MS.gene03707.t1.exon4;Parent=MS.gene03707.t1 |
| chr4.3 | CDS | 43877181 | 43877285 | 43877181 | ID=cds.MS.gene03707.t1;Parent=MS.gene03707.t1 |
| Gene Sequence |
| Protein sequence |
