Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03710.t1 | XP_003606327.1 | 88.4 | 294 | 29 | 2 | 1 | 290 | 1 | 293 | 1.30E-116 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03710.t1 | Q681X4 | 44.3 | 210 | 69 | 6 | 100 | 290 | 106 | 286 | 2.3e-34 | 147.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03710.t1 | G7JN94 | 88.4 | 294 | 29 | 2 | 1 | 290 | 1 | 293 | 9.0e-117 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene03710.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03710.t1 | MTR_4g057230 | 91.837 | 294 | 19 | 2 | 1 | 290 | 1 | 293 | 1.77e-167 | 466 |
| MS.gene03710.t1 | MTR_2g084315 | 45.860 | 314 | 95 | 12 | 17 | 290 | 15 | 293 | 6.10e-69 | 216 |
| MS.gene03710.t1 | MTR_1g090703 | 38.172 | 372 | 116 | 13 | 8 | 290 | 9 | 355 | 1.17e-60 | 196 |
| MS.gene03710.t1 | MTR_1g062780 | 37.188 | 320 | 142 | 12 | 5 | 290 | 3 | 297 | 3.61e-50 | 167 |
| MS.gene03710.t1 | MTR_1g067650 | 34.234 | 222 | 64 | 7 | 55 | 264 | 5 | 156 | 6.50e-26 | 100 |
| MS.gene03710.t1 | MTR_1g067640 | 39.286 | 168 | 40 | 5 | 109 | 264 | 38 | 155 | 1.41e-25 | 100 |
| MS.gene03710.t1 | MTR_7g023560 | 36.364 | 176 | 41 | 4 | 62 | 234 | 8 | 115 | 5.14e-24 | 96.3 |
| MS.gene03710.t1 | MTR_1g115345 | 33.889 | 180 | 60 | 5 | 56 | 235 | 6 | 126 | 1.84e-22 | 92.8 |
| MS.gene03710.t1 | MTR_7g100100 | 37.267 | 161 | 47 | 5 | 109 | 262 | 34 | 147 | 6.36e-21 | 87.8 |
| MS.gene03710.t1 | MTR_1g077730 | 40.000 | 160 | 78 | 6 | 108 | 258 | 43 | 193 | 4.72e-20 | 86.3 |
| MS.gene03710.t1 | MTR_4g028610 | 37.791 | 172 | 70 | 6 | 108 | 259 | 226 | 380 | 5.32e-19 | 87.0 |
| MS.gene03710.t1 | MTR_4g109340 | 36.076 | 158 | 82 | 4 | 109 | 262 | 348 | 490 | 3.69e-18 | 84.7 |
| MS.gene03710.t1 | MTR_0160s0030 | 34.615 | 156 | 46 | 4 | 109 | 262 | 240 | 341 | 5.02e-18 | 83.6 |
| MS.gene03710.t1 | MTR_1g077700 | 34.426 | 183 | 78 | 6 | 85 | 258 | 36 | 185 | 2.71e-16 | 75.5 |
| MS.gene03710.t1 | MTR_4g027440 | 36.364 | 165 | 52 | 5 | 109 | 259 | 220 | 345 | 9.25e-16 | 77.0 |
| MS.gene03710.t1 | MTR_2g096540 | 32.370 | 173 | 55 | 6 | 96 | 266 | 19 | 131 | 4.77e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03710.t1 | AT2G28200 | 42.903 | 310 | 107 | 11 | 17 | 290 | 11 | 286 | 6.57e-57 | 185 |
| MS.gene03710.t1 | AT5G03510 | 39.000 | 300 | 129 | 11 | 21 | 290 | 17 | 292 | 1.66e-51 | 171 |
| MS.gene03710.t1 | AT5G04390 | 33.598 | 378 | 128 | 11 | 14 | 290 | 7 | 362 | 1.61e-48 | 165 |
| MS.gene03710.t1 | AT3G10470 | 32.166 | 314 | 113 | 7 | 60 | 290 | 102 | 398 | 1.19e-39 | 143 |
| MS.gene03710.t1 | AT2G37430 | 34.112 | 214 | 71 | 5 | 58 | 263 | 9 | 160 | 1.15e-27 | 105 |
| MS.gene03710.t1 | AT3G53600 | 29.412 | 221 | 79 | 6 | 53 | 263 | 4 | 157 | 1.29e-20 | 87.0 |
| MS.gene03710.t1 | AT3G60580 | 34.722 | 216 | 81 | 7 | 63 | 269 | 124 | 288 | 1.18e-18 | 84.3 |
| MS.gene03710.t1 | AT2G28710 | 29.858 | 211 | 62 | 7 | 65 | 264 | 13 | 148 | 6.84e-17 | 76.6 |
| MS.gene03710.t1 | AT5G67450 | 28.502 | 207 | 93 | 6 | 22 | 227 | 34 | 186 | 5.34e-13 | 67.8 |
Find 81 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACAAAGTTTCAGTTTC+CGG | 0.212657 | 4.3:+43941342 | MS.gene03710:CDS |
| GGCTTGTTGATGAGAATAAA+AGG | 0.257462 | 4.3:+43940789 | MS.gene03710:CDS |
| GGTTTGAAAGCAGCTATTAA+TGG | 0.332072 | 4.3:+43941124 | MS.gene03710:CDS |
| GATGGCTGCTGCTCCGGCTT+TGG | 0.337938 | 4.3:+43941384 | MS.gene03710:CDS |
| TCCCACCAATTGCCTAATAA+TGG | 0.343296 | 4.3:-43941414 | None:intergenic |
| GGCTGCTGCTCCGGCTTTGG+TGG | 0.355185 | 4.3:+43941387 | MS.gene03710:CDS |
| CGCCGCGGCTGTCGCGGCCC+CGG | 0.362249 | 4.3:+43941249 | MS.gene03710:CDS |
| AGATGATGATGAAGAAGATT+TGG | 0.365412 | 4.3:+43940727 | MS.gene03710:CDS |
| TTTGGTGGGTTGCCATTATT+AGG | 0.369907 | 4.3:+43941402 | MS.gene03710:CDS |
| GAAACTGAAACTTTGTTTCC+CGG | 0.370306 | 4.3:-43941339 | None:intergenic |
| TGATTCGCAATCAGTTAATC+TGG | 0.378084 | 4.3:+43941024 | MS.gene03710:CDS |
| CACCACCGCAGCAGCAGCCT+CGG | 0.380217 | 4.3:+43940984 | MS.gene03710:CDS |
| ATTCATGAGTGTTCCATTTG+TGG | 0.380454 | 4.3:+43941160 | MS.gene03710:CDS |
| TGCTGCTGCGGTGGTGGTTG+TGG | 0.383449 | 4.3:-43940977 | None:intergenic |
| GTTTGAAAGCAGCTATTAAT+GGG | 0.383602 | 4.3:+43941125 | MS.gene03710:CDS |
| ACAATTGGATCTTAACCTTC+CGG | 0.387432 | 4.3:+43941300 | MS.gene03710:CDS |
| TTCAAGCTTTGGGTGGTCAC+AGG | 0.400243 | 4.3:+43940912 | MS.gene03710:CDS |
| TGAGATGGAAGAGTTTGTTA+TGG | 0.402618 | 4.3:+43940547 | None:intergenic |
| TAGCTCAAGGTGGAAATCAT+AGG | 0.408004 | 4.3:+43940768 | MS.gene03710:CDS |
| CTTGGCCTAACTCCTTCATC+CGG | 0.411052 | 4.3:-43941268 | None:intergenic |
| CGAGGCTGCTGCTGCGGTGG+TGG | 0.411607 | 4.3:-43940983 | None:intergenic |
| TGTGAACTCTGAACCACAAA+TGG | 0.422342 | 4.3:-43941173 | None:intergenic |
| GCTGTCGCGGCCCCGGATGA+AGG | 0.431837 | 4.3:+43941256 | MS.gene03710:CDS |
| TCCTTGTGGTGTTGTTGCTA+TGG | 0.433985 | 4.3:+43940652 | MS.gene03710:CDS |
| GGCAAACGCCGCGGCTGTCG+CGG | 0.436027 | 4.3:+43941243 | MS.gene03710:CDS |
| CGGCACCGGAGGAGGATCTC+CGG | 0.438081 | 4.3:+43941320 | MS.gene03710:CDS |
| TCCAATTGTAAAATATTCCT+TGG | 0.441862 | 4.3:-43941286 | None:intergenic |
| TGATGAGAATAAAAGGGAAA+AGG | 0.444034 | 4.3:+43940796 | MS.gene03710:CDS |
| AATGGTGATGGCTGCTGCTC+CGG | 0.446387 | 4.3:+43941378 | MS.gene03710:CDS |
| CGGAGATCCTCCTCCGGTGC+CGG | 0.448646 | 4.3:-43941319 | None:intergenic |
| CGGCCCCGGATGAAGGAGTT+AGG | 0.454771 | 4.3:+43941263 | MS.gene03710:CDS |
| GATGAGAATAAAAGGGAAAA+GGG | 0.455980 | 4.3:+43940797 | MS.gene03710:CDS |
| GTGTCCACCCAATGCTTGTC+CGG | 0.464924 | 4.3:-43941197 | None:intergenic |
| ATCCGGGGCCGCGACAGCCG+CGG | 0.468884 | 4.3:-43941251 | None:intergenic |
| GTTTGTTATGGAGGAAAAGA+TGG | 0.472339 | 4.3:+43940559 | MS.gene03710:CDS |
| AATGGAACACTCATGAATCT+TGG | 0.473930 | 4.3:-43941155 | None:intergenic |
| CCACCCAAAGCTTGAAAAGA+AGG | 0.473990 | 4.3:-43940905 | None:intergenic |
| GGCCGAGGCTGCTGCTGCGG+TGG | 0.480746 | 4.3:-43940986 | None:intergenic |
| TTTCAAATGGGGAATCATCA+TGG | 0.481342 | 4.3:+43941103 | MS.gene03710:CDS |
| TTGGCCTAACTCCTTCATCC+GGG | 0.483136 | 4.3:-43941267 | None:intergenic |
| TGTGGCCGAGGCTGCTGCTG+CGG | 0.483970 | 4.3:-43940989 | None:intergenic |
| GATGGAAGAGTTTGTTATGG+AGG | 0.484063 | 4.3:+43940550 | None:intergenic |
| GGATCTTAACCTTCCGGCAC+CGG | 0.484472 | 4.3:+43941306 | MS.gene03710:CDS |
| GGTGAGACTAGCACAAAACT+TGG | 0.487527 | 4.3:+43940842 | MS.gene03710:CDS |
| TTCACATCCGGACAAGCATT+GGG | 0.492037 | 4.3:+43941190 | MS.gene03710:CDS |
| CTTGAAAAGAAGGAAAAGTT+CGG | 0.492437 | 4.3:-43940895 | None:intergenic |
| TAACCTTCCGGCACCGGAGG+AGG | 0.492624 | 4.3:+43941312 | MS.gene03710:CDS |
| TGTGGTTCAGAGTTCACATC+CGG | 0.498637 | 4.3:+43941178 | MS.gene03710:CDS |
| GCTGCTGCTCCGGCTTTGGT+GGG | 0.498866 | 4.3:+43941388 | MS.gene03710:CDS |
| AAAAGGGAAAAGGGTAGTCA+TGG | 0.501331 | 4.3:+43940806 | MS.gene03710:CDS |
| GTGGACACATGAGGAGGCAT+AGG | 0.504351 | 4.3:+43941212 | MS.gene03710:CDS |
| GCTTGTTGATGAGAATAAAA+GGG | 0.507642 | 4.3:+43940790 | MS.gene03710:CDS |
| GTTCACATCCGGACAAGCAT+TGG | 0.508676 | 4.3:+43941189 | MS.gene03710:CDS |
| GGCACCGGAGGAGGATCTCC+GGG | 0.516007 | 4.3:+43941321 | MS.gene03710:CDS |
| TGTTTGATTCTTCTAGCTCA+AGG | 0.518149 | 4.3:+43940755 | MS.gene03710:CDS |
| TAATGGCAACCCACCAAAGC+CGG | 0.522225 | 4.3:-43941397 | None:intergenic |
| TCAAGCTTTGGGTGGTCACA+GGG | 0.535579 | 4.3:+43940913 | MS.gene03710:CDS |
| GTTTCCCGGAGATCCTCCTC+CGG | 0.541463 | 4.3:-43941325 | None:intergenic |
| TGAGAAACCTCGTGGGCCGA+TGG | 0.552592 | 4.3:+43941075 | MS.gene03710:CDS |
| TGGACACATGAGGAGGCATA+GGG | 0.553507 | 4.3:+43941213 | MS.gene03710:CDS |
| CCCATTTGAAAAGAAACCAT+CGG | 0.580230 | 4.3:-43941091 | None:intergenic |
| AAAGCCTAAAATCATGGCTG+AGG | 0.584944 | 4.3:+43940946 | MS.gene03710:CDS |
| GAGGAGGCATAGGGCATCAG+TGG | 0.587332 | 4.3:+43941222 | MS.gene03710:CDS |
| GATCCTCCTCCGGTGCCGGA+AGG | 0.589009 | 4.3:-43941315 | None:intergenic |
| TGTGATGAAGACTGTGGCCG+AGG | 0.593635 | 4.3:-43941001 | None:intergenic |
| AGCAGCTATTAATGGGAACA+AGG | 0.601134 | 4.3:+43941132 | MS.gene03710:CDS |
| TCTTAACCTTCCGGCACCGG+AGG | 0.607477 | 4.3:+43941309 | MS.gene03710:CDS |
| TGGCCTAACTCCTTCATCCG+GGG | 0.608914 | 4.3:-43941266 | None:intergenic |
| CGGATGAAGGAGTTAGGCCA+AGG | 0.613650 | 4.3:+43941269 | MS.gene03710:CDS |
| GATGCAACTCACATAGCCAA+AGG | 0.631447 | 4.3:+43940599 | MS.gene03710:CDS |
| AAGCATTGGGTGGACACATG+AGG | 0.635825 | 4.3:+43941203 | MS.gene03710:CDS |
| CATTGGGTGGACACATGAGG+AGG | 0.644735 | 4.3:+43941206 | MS.gene03710:CDS |
| GCCATAGCAACAACACCACA+AGG | 0.645146 | 4.3:-43940653 | None:intergenic |
| ACATCCGGACAAGCATTGGG+TGG | 0.645911 | 4.3:+43941193 | MS.gene03710:CDS |
| GGCATCAGTGGCAAACGCCG+CGG | 0.646242 | 4.3:+43941234 | MS.gene03710:CDS |
| TTGATTCTTCTAGCTCAAGG+TGG | 0.647646 | 4.3:+43940758 | MS.gene03710:CDS |
| GAAGAAGCTGAGAAACCTCG+TGG | 0.659484 | 4.3:+43941067 | MS.gene03710:CDS |
| AAAGAAACCATCGGCCCACG+AGG | 0.675971 | 4.3:-43941082 | None:intergenic |
| CCAAAGGAAAACGTACCAAG+AGG | 0.677248 | 4.3:+43940615 | MS.gene03710:CDS |
| AAGAAGCTGAGAAACCTCGT+GGG | 0.704144 | 4.3:+43941068 | MS.gene03710:CDS |
| GAATCATGTGATGAAGACTG+TGG | 0.801031 | 4.3:-43941007 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTCATGGAAATAAAAAAAT+TGG | + | chr4.3:43940821-43940840 | MS.gene03710:CDS | 20.0% |
| ! | TCCAATTGTAAAATATTCCT+TGG | - | chr4.3:43941289-43941308 | None:intergenic | 25.0% |
| AGACAAAAATCTTAACCTCT+TGG | - | chr4.3:43940633-43940652 | None:intergenic | 30.0% | |
| CTTGAAAAGAAGGAAAAGTT+CGG | - | chr4.3:43940898-43940917 | None:intergenic | 30.0% | |
| GATGAGAATAAAAGGGAAAA+GGG | + | chr4.3:43940797-43940816 | MS.gene03710:CDS | 30.0% | |
| GTTTGAAAGCAGCTATTAAT+GGG | + | chr4.3:43941125-43941144 | MS.gene03710:CDS | 30.0% | |
| TACACAAAAATCAATGGTGA+TGG | + | chr4.3:43941366-43941385 | MS.gene03710:CDS | 30.0% | |
| TCACAAAAAGCCTAAAATCA+TGG | + | chr4.3:43940940-43940959 | MS.gene03710:CDS | 30.0% | |
| TGATGAGAATAAAAGGGAAA+AGG | + | chr4.3:43940796-43940815 | MS.gene03710:CDS | 30.0% | |
| ! | AGATGATGATGAAGAAGATT+TGG | + | chr4.3:43940727-43940746 | MS.gene03710:CDS | 30.0% |
| ! | GCCAAGGAATATTTTACAAT+TGG | + | chr4.3:43941285-43941304 | MS.gene03710:CDS | 30.0% |
| ! | GCTTGTTGATGAGAATAAAA+GGG | + | chr4.3:43940790-43940809 | MS.gene03710:CDS | 30.0% |
| ! | TTAAGATTTTTGTCTCCTTG+TGG | + | chr4.3:43940638-43940657 | MS.gene03710:CDS | 30.0% |
| !! | TTTCCTTCTTTTCAAGCTTT+GGG | + | chr4.3:43940902-43940921 | MS.gene03710:CDS | 30.0% |
| !! | TTTTCCTTCTTTTCAAGCTT+TGG | + | chr4.3:43940901-43940920 | MS.gene03710:CDS | 30.0% |
| AATGGAACACTCATGAATCT+TGG | - | chr4.3:43941158-43941177 | None:intergenic | 35.0% | |
| ACAATTGGATCTTAACCTTC+CGG | + | chr4.3:43941300-43941319 | MS.gene03710:CDS | 35.0% | |
| ATTCATGAGTGTTCCATTTG+TGG | + | chr4.3:43941160-43941179 | MS.gene03710:CDS | 35.0% | |
| CCCATTTGAAAAGAAACCAT+CGG | - | chr4.3:43941094-43941113 | None:intergenic | 35.0% | |
| GGAAACAAAGTTTCAGTTTC+CGG | + | chr4.3:43941342-43941361 | MS.gene03710:CDS | 35.0% | |
| GGTTTGAAAGCAGCTATTAA+TGG | + | chr4.3:43941124-43941143 | MS.gene03710:CDS | 35.0% | |
| TGATTCGCAATCAGTTAATC+TGG | + | chr4.3:43941024-43941043 | MS.gene03710:CDS | 35.0% | |
| TTTCAAATGGGGAATCATCA+TGG | + | chr4.3:43941103-43941122 | MS.gene03710:CDS | 35.0% | |
| ! | CCGATGGTTTCTTTTCAAAT+GGG | + | chr4.3:43941091-43941110 | MS.gene03710:CDS | 35.0% |
| ! | CGATGGTTTCTTTTCAAATG+GGG | + | chr4.3:43941092-43941111 | MS.gene03710:CDS | 35.0% |
| ! | GAAACTGAAACTTTGTTTCC+CGG | - | chr4.3:43941342-43941361 | None:intergenic | 35.0% |
| !! | GGCTTGTTGATGAGAATAAA+AGG | + | chr4.3:43940789-43940808 | MS.gene03710:CDS | 35.0% |
| !! | GTTTGTTATGGAGGAAAAGA+TGG | + | chr4.3:43940559-43940578 | MS.gene03710:CDS | 35.0% |
| !! | TGTTTGATTCTTCTAGCTCA+AGG | + | chr4.3:43940755-43940774 | MS.gene03710:CDS | 35.0% |
| !!! | ACCATTGATTTTTGTGTAGC+CGG | - | chr4.3:43941364-43941383 | None:intergenic | 35.0% |
| AAAAGGGAAAAGGGTAGTCA+TGG | + | chr4.3:43940806-43940825 | MS.gene03710:CDS | 40.0% | |
| AAAGCCTAAAATCATGGCTG+AGG | + | chr4.3:43940946-43940965 | MS.gene03710:CDS | 40.0% | |
| AGCAGCTATTAATGGGAACA+AGG | + | chr4.3:43941132-43941151 | MS.gene03710:CDS | 40.0% | |
| GAATCATGTGATGAAGACTG+TGG | - | chr4.3:43941010-43941029 | None:intergenic | 40.0% | |
| TAGCTCAAGGTGGAAATCAT+AGG | + | chr4.3:43940768-43940787 | MS.gene03710:CDS | 40.0% | |
| TCCGGCTACACAAAAATCAA+TGG | + | chr4.3:43941360-43941379 | MS.gene03710:CDS | 40.0% | |
| TGTGAACTCTGAACCACAAA+TGG | - | chr4.3:43941176-43941195 | None:intergenic | 40.0% | |
| ! | GCCGATGGTTTCTTTTCAAA+TGG | + | chr4.3:43941090-43941109 | MS.gene03710:CDS | 40.0% |
| ! | TTCTCCTCAGCCATGATTTT+AGG | - | chr4.3:43940953-43940972 | None:intergenic | 40.0% |
| !! | TTGATTCTTCTAGCTCAAGG+TGG | + | chr4.3:43940758-43940777 | MS.gene03710:CDS | 40.0% |
| AAGAAGCTGAGAAACCTCGT+GGG | + | chr4.3:43941068-43941087 | MS.gene03710:CDS | 45.0% | |
| CCAAAGGAAAACGTACCAAG+AGG | + | chr4.3:43940615-43940634 | MS.gene03710:CDS | 45.0% | |
| CCACCCAAAGCTTGAAAAGA+AGG | - | chr4.3:43940908-43940927 | None:intergenic | 45.0% | |
| GATGCAACTCACATAGCCAA+AGG | + | chr4.3:43940599-43940618 | MS.gene03710:CDS | 45.0% | |
| GGTGAGACTAGCACAAAACT+TGG | + | chr4.3:43940842-43940861 | MS.gene03710:CDS | 45.0% | |
| TGTGGTTCAGAGTTCACATC+CGG | + | chr4.3:43941178-43941197 | MS.gene03710:CDS | 45.0% | |
| TTCACATCCGGACAAGCATT+GGG | + | chr4.3:43941190-43941209 | MS.gene03710:CDS | 45.0% | |
| ! | CCTCTTGGTACGTTTTCCTT+TGG | - | chr4.3:43940618-43940637 | None:intergenic | 45.0% |
| !! | TCCTTGTGGTGTTGTTGCTA+TGG | + | chr4.3:43940652-43940671 | MS.gene03710:CDS | 45.0% |
| !!! | CCTTCTTTTCAAGCTTTGGG+TGG | + | chr4.3:43940905-43940924 | MS.gene03710:CDS | 45.0% |
| CTTGGCCTAACTCCTTCATC+CGG | - | chr4.3:43941271-43941290 | None:intergenic | 50.0% | |
| GAAGAAGCTGAGAAACCTCG+TGG | + | chr4.3:43941067-43941086 | MS.gene03710:CDS | 50.0% | |
| GCCATAGCAACAACACCACA+AGG | - | chr4.3:43940656-43940675 | None:intergenic | 50.0% | |
| GTTCACATCCGGACAAGCAT+TGG | + | chr4.3:43941189-43941208 | MS.gene03710:CDS | 50.0% | |
| TAATGGCAACCCACCAAAGC+CGG | - | chr4.3:43941400-43941419 | None:intergenic | 50.0% | |
| TTGGCCTAACTCCTTCATCC+GGG | - | chr4.3:43941270-43941289 | None:intergenic | 50.0% | |
| ! | TGGACACATGAGGAGGCATA+GGG | + | chr4.3:43941213-43941232 | MS.gene03710:CDS | 50.0% |
| !! | AAGCATTGGGTGGACACATG+AGG | + | chr4.3:43941203-43941222 | MS.gene03710:CDS | 50.0% |
| !! | TCAAGCTTTGGGTGGTCACA+GGG | + | chr4.3:43940913-43940932 | MS.gene03710:CDS | 50.0% |
| !! | TTCAAGCTTTGGGTGGTCAC+AGG | + | chr4.3:43940912-43940931 | MS.gene03710:CDS | 50.0% |
| AAAGAAACCATCGGCCCACG+AGG | - | chr4.3:43941085-43941104 | None:intergenic | 55.0% | |
| CATTGGGTGGACACATGAGG+AGG | + | chr4.3:43941206-43941225 | MS.gene03710:CDS | 55.0% | |
| CGGATGAAGGAGTTAGGCCA+AGG | + | chr4.3:43941269-43941288 | MS.gene03710:CDS | 55.0% | |
| GGATCTTAACCTTCCGGCAC+CGG | + | chr4.3:43941306-43941325 | MS.gene03710:CDS | 55.0% | |
| GTGTCCACCCAATGCTTGTC+CGG | - | chr4.3:43941200-43941219 | None:intergenic | 55.0% | |
| TGGCCTAACTCCTTCATCCG+GGG | - | chr4.3:43941269-43941288 | None:intergenic | 55.0% | |
| TGTGATGAAGACTGTGGCCG+AGG | - | chr4.3:43941004-43941023 | None:intergenic | 55.0% | |
| ! | GTGGACACATGAGGAGGCAT+AGG | + | chr4.3:43941212-43941231 | MS.gene03710:CDS | 55.0% |
| !! | AATGGTGATGGCTGCTGCTC+CGG | + | chr4.3:43941378-43941397 | MS.gene03710:CDS | 55.0% |
| !! | ACATCCGGACAAGCATTGGG+TGG | + | chr4.3:43941193-43941212 | MS.gene03710:CDS | 55.0% |
| GTTTCCCGGAGATCCTCCTC+CGG | - | chr4.3:43941328-43941347 | None:intergenic | 60.0% | |
| TGAGAAACCTCGTGGGCCGA+TGG | + | chr4.3:43941075-43941094 | MS.gene03710:CDS | 60.0% | |
| ! | GAGGAGGCATAGGGCATCAG+TGG | + | chr4.3:43941222-43941241 | MS.gene03710:CDS | 60.0% |
| ! | TCTTAACCTTCCGGCACCGG+AGG | + | chr4.3:43941309-43941328 | MS.gene03710:CDS | 60.0% |
| CGGCCCCGGATGAAGGAGTT+AGG | + | chr4.3:43941263-43941282 | MS.gene03710:CDS | 65.0% | |
| GATGGCTGCTGCTCCGGCTT+TGG | + | chr4.3:43941384-43941403 | MS.gene03710:CDS | 65.0% | |
| GGCATCAGTGGCAAACGCCG+CGG | + | chr4.3:43941234-43941253 | MS.gene03710:CDS | 65.0% | |
| ! | GCTGCTGCTCCGGCTTTGGT+GGG | + | chr4.3:43941388-43941407 | MS.gene03710:CDS | 65.0% |
| ! | TAACCTTCCGGCACCGGAGG+AGG | + | chr4.3:43941312-43941331 | MS.gene03710:CDS | 65.0% |
| ! | TGCTGCTGCGGTGGTGGTTG+TGG | - | chr4.3:43940980-43940999 | None:intergenic | 65.0% |
| CACCACCGCAGCAGCAGCCT+CGG | + | chr4.3:43940984-43941003 | MS.gene03710:CDS | 70.0% | |
| CGGAGATCCTCCTCCGGTGC+CGG | - | chr4.3:43941322-43941341 | None:intergenic | 70.0% | |
| TGTGGCCGAGGCTGCTGCTG+CGG | - | chr4.3:43940992-43941011 | None:intergenic | 70.0% | |
| ! | CGGCACCGGAGGAGGATCTC+CGG | + | chr4.3:43941320-43941339 | MS.gene03710:CDS | 70.0% |
| ! | GATCCTCCTCCGGTGCCGGA+AGG | - | chr4.3:43941318-43941337 | None:intergenic | 70.0% |
| ! | GGCACCGGAGGAGGATCTCC+GGG | + | chr4.3:43941321-43941340 | MS.gene03710:CDS | 70.0% |
| ! | GGCTGCTGCTCCGGCTTTGG+TGG | + | chr4.3:43941387-43941406 | MS.gene03710:CDS | 70.0% |
| CGAGGCTGCTGCTGCGGTGG+TGG | - | chr4.3:43940986-43941005 | None:intergenic | 75.0% | |
| GCTGTCGCGGCCCCGGATGA+AGG | + | chr4.3:43941256-43941275 | MS.gene03710:CDS | 75.0% | |
| GGCAAACGCCGCGGCTGTCG+CGG | + | chr4.3:43941243-43941262 | MS.gene03710:CDS | 75.0% | |
| ! | ATCCGGGGCCGCGACAGCCG+CGG | - | chr4.3:43941254-43941273 | None:intergenic | 80.0% |
| ! | GGCCGAGGCTGCTGCTGCGG+TGG | - | chr4.3:43940989-43941008 | None:intergenic | 80.0% |
| ! | CGCCGCGGCTGTCGCGGCCC+CGG | + | chr4.3:43941249-43941268 | MS.gene03710:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 43940551 | 43941423 | 43940551 | ID=MS.gene03710 |
| chr4.3 | mRNA | 43940551 | 43941423 | 43940551 | ID=MS.gene03710.t1;Parent=MS.gene03710 |
| chr4.3 | exon | 43940551 | 43941423 | 43940551 | ID=MS.gene03710.t1.exon1;Parent=MS.gene03710.t1 |
| chr4.3 | CDS | 43940551 | 43941423 | 43940551 | ID=cds.MS.gene03710.t1;Parent=MS.gene03710.t1 |
| Gene Sequence |
| Protein sequence |
