AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037192

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037192.t1 MTR_2g041620 96.109 257 10 0 1 257 42 298 0.0 517
MS.gene037192.t1 MTR_2g041620 96.457 254 9 0 4 257 33 286 0.0 511
MS.gene037192.t1 MTR_2g041620 95.397 239 11 0 1 239 42 280 6.49e-174 480
MS.gene037192.t1 MTR_2g041620 95.755 212 9 0 1 212 42 253 1.32e-152 426
MS.gene037192.t1 MTR_4g129490 27.660 188 111 5 65 236 58 236 2.19e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037192.t1 AT2G06025 63.137 255 90 2 1 255 35 285 3.23e-115 332
MS.gene037192.t1 AT2G06025 63.137 255 90 2 1 255 35 285 3.23e-115 332
MS.gene037192.t1 AT2G06025 63.137 255 90 2 1 255 35 285 3.23e-115 332
MS.gene037192.t1 AT2G06025 64.623 212 71 2 1 212 35 242 7.95e-97 284
MS.gene037192.t1 AT2G06025 64.623 212 71 2 1 212 35 242 7.95e-97 284
MS.gene037192.t1 AT2G06025 64.623 212 71 2 1 212 35 242 7.95e-97 284
MS.gene037192.t1 AT2G06025 62.360 178 63 2 1 178 35 208 4.27e-76 230
MS.gene037192.t1 AT4G28030 30.583 206 101 7 61 242 58 245 3.99e-13 67.8

Find 51 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCTTCTTCCACCACTTT+AGG 0.251194 2.3:-48260012 None:intergenic
TCCTTGTCGACGAGCCAATT+TGG 0.274791 2.3:-48262118 None:intergenic
AAATTTATGTGTTGCCAAAT+TGG 0.283413 2.3:+48262104 MS.gene037192:CDS
AGAGAAAATAGATTTGAGTT+TGG 0.303539 2.3:+48260090 MS.gene037192:CDS
AAGCGGTGCAAGGTGCAAAA+TGG 0.311231 2.3:+48261617 MS.gene037192:CDS
GAGAAAATAGATTTGAGTTT+GGG 0.321359 2.3:+48260091 MS.gene037192:CDS
CAAAAGGAAATTTGCTGATC+AGG 0.341147 2.3:+48261487 MS.gene037192:CDS
CTGTGCTTGATGAAGAGTTT+TGG 0.345709 2.3:+48260133 MS.gene037192:CDS
TCCACCACTTTAGGAACAAT+TGG 0.347112 2.3:-48260003 None:intergenic
CTGTTTATGCTGCAACAAAA+AGG 0.359050 2.3:-48262051 None:intergenic
TTACCTCAAAGCCCATCTTT+TGG 0.386865 2.3:-48262313 None:intergenic
TGCAGACAGCAGCCTGGCTA+AGG 0.397087 2.3:+48260899 MS.gene037192:intron
TCTCTCCTTGCAGCAAATAT+CGG 0.397446 2.3:-48261914 None:intergenic
GGCTAAGGGCAGAAAGTCAT+TGG 0.397544 2.3:+48260914 MS.gene037192:CDS
AGCGGTGCAAGGTGCAAAAT+GGG 0.411100 2.3:+48261618 MS.gene037192:CDS
TCATTTAGCAGGTGTGAGTC+AGG 0.439184 2.3:+48262244 MS.gene037192:intron
ATGACTTTCTGCCCTTAGCC+AGG 0.443627 2.3:-48260911 None:intergenic
AGAACACCACCAAGTAGATA+TGG 0.454568 2.3:+48262072 MS.gene037192:CDS
GTTGAAAATGCAAAATCTAA+TGG 0.457985 2.3:+48262168 MS.gene037192:CDS
GTACCAAAAGATGGGCTTTG+AGG 0.468548 2.3:+48262310 MS.gene037192:CDS
GTTCCTAAAGTGGTGGAAGA+AGG 0.470682 2.3:+48260009 MS.gene037192:CDS
AGTTTGGGCAATTTGTTGCT+AGG 0.471404 2.3:+48260106 MS.gene037192:CDS
ACAGTTATTGTACCAAAAGA+TGG 0.478573 2.3:+48262301 MS.gene037192:CDS
AAGTCCAATTGTTCCTAAAG+TGG 0.481043 2.3:+48259999 MS.gene037192:CDS
TCATGTTTATCAGGTGAGAA+AGG 0.487782 2.3:+48261830 MS.gene037192:intron
CGTAGCAAGTATGTTTCCTC+TGG 0.493901 2.3:-48262460 None:intergenic
GATATATTGATATCTACAAA+AGG 0.499748 2.3:+48261471 MS.gene037192:intron
TGCATGTGGACAGAAATAAT+AGG 0.513457 2.3:+48262273 MS.gene037192:CDS
CGAATGGTCTTCGATTTGAT+CGG 0.516980 2.3:+48260040 MS.gene037192:CDS
TATGAAGAATAAGAAGATGA+AGG 0.519696 2.3:+48259954 MS.gene037192:CDS
GCCAAATTGGCTCGTCGACA+AGG 0.522479 2.3:+48262117 MS.gene037192:CDS
GTGGACAGAAATAATAGGCC+TGG 0.530546 2.3:+48262278 MS.gene037192:CDS
GCAATGTAACCATATCTACT+TGG 0.536879 2.3:-48262081 None:intergenic
CTAATCAACTCTTGTTCCGA+CGG 0.540516 2.3:-48260069 None:intergenic
GTTTGGGCAATTTGTTGCTA+GGG 0.542877 2.3:+48260107 MS.gene037192:CDS
ATTTGATCGGTTGCAGCCGT+CGG 0.545614 2.3:+48260053 MS.gene037192:CDS
CAGTTATTGTACCAAAAGAT+GGG 0.552741 2.3:+48262302 MS.gene037192:CDS
GCTAAGGGCAGAAAGTCATT+GGG 0.553474 2.3:+48260915 MS.gene037192:CDS
GAAGAAGGTTTCAGCTCGAA+TGG 0.563358 2.3:+48260024 MS.gene037192:CDS
TCCAATTGTTCCTAAAGTGG+TGG 0.567046 2.3:+48260002 MS.gene037192:CDS
TGGTTGAAACTGCAAACTCT+CGG 0.577388 2.3:+48262431 MS.gene037192:CDS
GAAGAATAAGAAGATGAAGG+AGG 0.579221 2.3:+48259957 MS.gene037192:CDS
GCAGACAGCAGCCTGGCTAA+GGG 0.579446 2.3:+48260900 MS.gene037192:intron
GGGAGAATCAAACATATGAA+AGG 0.580964 2.3:+48260935 MS.gene037192:CDS
AATATCCGATATTTGCTGCA+AGG 0.586800 2.3:+48261909 MS.gene037192:CDS
CAGCTGCGCATGCATTATCG+CGG 0.671835 2.3:+48261643 MS.gene037192:CDS
AAACTCTCGGTTGTTACCAG+AGG 0.674396 2.3:+48262444 MS.gene037192:CDS
ATGTAACCATATCTACTTGG+TGG 0.675557 2.3:-48262078 None:intergenic
GAGTCAGGTATATGTGCATG+TGG 0.676318 2.3:+48262259 MS.gene037192:CDS
GCGGTGCAAGGTGCAAAATG+GGG 0.677118 2.3:+48261619 MS.gene037192:CDS
TATTGTTTAGGAATTTAATG+CGG 0.686710 2.3:+48261589 MS.gene037192:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAACAAATTCAAA+CGG - chr2.3:48260190-48260209 None:intergenic 10.0%
!! AAAAACATTTAATGAAATGA+AGG - chr2.3:48261055-48261074 None:intergenic 15.0%
!! AAAAATAAACAAATTCAAAC+GGG - chr2.3:48260189-48260208 None:intergenic 15.0%
!! AAAACATTTAATGAAATGAA+GGG - chr2.3:48261054-48261073 None:intergenic 15.0%
!! ATATTTAACCCTAAAATAAT+TGG - chr2.3:48261164-48261183 None:intergenic 15.0%
!! TATTTAACCCTAAAATAATT+GGG - chr2.3:48261163-48261182 None:intergenic 15.0%
!!! AAATATGTTTTTCATACATA+AGG + chr2.3:48261178-48261197 MS.gene037192:intron 15.0%
!!! TTTTCTAAATAGTAGAATAT+AGG + chr2.3:48261343-48261362 MS.gene037192:intron 15.0%
!! ACAAATGAATGATAAATGAT+TGG - chr2.3:48260809-48260828 None:intergenic 20.0%
!! ATAAATCAGTCAATTCAAAT+GGG + chr2.3:48260366-48260385 MS.gene037192:intron 20.0%
!! ATTAACAATAGGTAAGAATT+TGG + chr2.3:48261415-48261434 MS.gene037192:intron 20.0%
!! CAACAATCTATAACAAAAAT+TGG - chr2.3:48262364-48262383 None:intergenic 20.0%
!! CATTAAATTCCTAAACAATA+GGG - chr2.3:48261589-48261608 None:intergenic 20.0%
!! GATATATTGATATCTACAAA+AGG + chr2.3:48261471-48261490 MS.gene037192:intron 20.0%
!! TACAATTTCATGAACTAAAA+TGG + chr2.3:48260648-48260667 MS.gene037192:intron 20.0%
!! TATTGTTTAGGAATTTAATG+CGG + chr2.3:48261589-48261608 MS.gene037192:intron 20.0%
!! TGATCTAGTTAAAAAAATTC+AGG + chr2.3:48261689-48261708 MS.gene037192:intron 20.0%
!! TTAACAATAGGTAAGAATTT+GGG + chr2.3:48261416-48261435 MS.gene037192:intron 20.0%
!! TTCATGAAATTGTAGAAATT+TGG - chr2.3:48260642-48260661 None:intergenic 20.0%
!!! AATCTTCAATGTTTTTTCAT+AGG + chr2.3:48260979-48260998 MS.gene037192:intron 20.0%
!!! ATCTTCAATGTTTTTTCATA+GGG + chr2.3:48260980-48260999 MS.gene037192:intron 20.0%
!!! TTTGAAATTGAAAATTCTCA+AGG + chr2.3:48260451-48260470 MS.gene037192:intron 20.0%
! AAATTTATGTGTTGCCAAAT+TGG + chr2.3:48262104-48262123 MS.gene037192:CDS 25.0%
! AATAAAGCTTAACCTAATGT+TGG + chr2.3:48260749-48260768 MS.gene037192:intron 25.0%
! AATTTAATGCGGTAAAAAAG+CGG + chr2.3:48261600-48261619 MS.gene037192:CDS 25.0%
! ACATGTGAAATCAATAACTA+TGG + chr2.3:48262386-48262405 MS.gene037192:intron 25.0%
! CATAAATCAGTCAATTCAAA+TGG + chr2.3:48260365-48260384 MS.gene037192:intron 25.0%
! CATACAATTTCATACACTAA+GGG - chr2.3:48260392-48260411 None:intergenic 25.0%
! GCATTAAATTCCTAAACAAT+AGG - chr2.3:48261590-48261609 None:intergenic 25.0%
! GTTGAAAATGCAAAATCTAA+TGG + chr2.3:48262168-48262187 MS.gene037192:CDS 25.0%
! TATGAAGAATAAGAAGATGA+AGG + chr2.3:48259954-48259973 MS.gene037192:CDS 25.0%
!! AGAGAAAATAGATTTGAGTT+TGG + chr2.3:48260090-48260109 MS.gene037192:CDS 25.0%
!! ATCATTCATTTGTACTTTTG+TGG + chr2.3:48260816-48260835 MS.gene037192:intron 25.0%
!! GAGAAAATAGATTTGAGTTT+GGG + chr2.3:48260091-48260110 MS.gene037192:CDS 25.0%
!! TTTTCTTTGATTCCAACATT+AGG - chr2.3:48260764-48260783 None:intergenic 25.0%
!!! GTTAAGTTGAAGTAACTTTA+TGG + chr2.3:48262201-48262220 MS.gene037192:intron 25.0%
!!! TCGATAATAAAAAGTGTTGT+AGG + chr2.3:48261873-48261892 MS.gene037192:CDS 25.0%
AACAAGAATCCCTATTGTTT+AGG + chr2.3:48261577-48261596 MS.gene037192:intron 30.0%
ACAGTTATTGTACCAAAAGA+TGG + chr2.3:48262301-48262320 MS.gene037192:CDS 30.0%
ATGAAGGGACTATAATTCAA+AGG - chr2.3:48261039-48261058 None:intergenic 30.0%
CAGTTATTGTACCAAAAGAT+GGG + chr2.3:48262302-48262321 MS.gene037192:CDS 30.0%
CCATACAATTTCATACACTA+AGG - chr2.3:48260393-48260412 None:intergenic 30.0%
CCTTAGTGTATGAAATTGTA+TGG + chr2.3:48260390-48260409 MS.gene037192:intron 30.0%
GATTATAAACCAGATCAAGA+TGG + chr2.3:48261303-48261322 MS.gene037192:intron 30.0%
TGAAGGGACTATAATTCAAA+GGG - chr2.3:48261038-48261057 None:intergenic 30.0%
TGTTTGGATTCATGTTTATC+AGG + chr2.3:48261821-48261840 MS.gene037192:intron 30.0%
! ATTTGCTTTGTCTGTCTTTT+AGG + chr2.3:48260673-48260692 MS.gene037192:intron 30.0%
! CAATTTATTGTCTGACTTGT+AGG + chr2.3:48260494-48260513 MS.gene037192:intron 30.0%
! CACTTGACTTGATTAACAAT+AGG + chr2.3:48261404-48261423 MS.gene037192:intron 30.0%
! GTTAGAGCTTTAATCAAAGT+TGG - chr2.3:48261742-48261761 None:intergenic 30.0%
! TTTCAACCATCTGAAATTGA+CGG - chr2.3:48262420-48262439 None:intergenic 30.0%
!! ACTTGTAGGATTAGTTGATT+TGG + chr2.3:48260508-48260527 MS.gene037192:intron 30.0%
!! CTTTGAGGTAATGTAATTGT+TGG + chr2.3:48262325-48262344 MS.gene037192:intron 30.0%
!! TTGGGTATGTTTTAAACTGT+TGG + chr2.3:48260152-48260171 MS.gene037192:intron 30.0%
AAAATGTGTTCCTTTCATCG+TGG + chr2.3:48261221-48261240 MS.gene037192:intron 35.0%
AACTTGTGTTGAGCATATTG+TGG + chr2.3:48261263-48261282 MS.gene037192:intron 35.0%
AAGTCCAATTGTTCCTAAAG+TGG + chr2.3:48259999-48260018 MS.gene037192:CDS 35.0%
AGTAATCTGAATGACTCTAC+CGG + chr2.3:48261367-48261386 MS.gene037192:intron 35.0%
AGTCATCATATCATTTCTGC+AGG + chr2.3:48262014-48262033 MS.gene037192:intron 35.0%
ATGTAACCATATCTACTTGG+TGG - chr2.3:48262081-48262100 None:intergenic 35.0%
CCAGTGTATAGTACTAAGTA+AGG - chr2.3:48261536-48261555 None:intergenic 35.0%
CCTTACTTAGTACTATACAC+TGG + chr2.3:48261533-48261552 MS.gene037192:intron 35.0%
CTGTTTATGCTGCAACAAAA+AGG - chr2.3:48262054-48262073 None:intergenic 35.0%
CTTGACTATGATTCGACTTA+CGG + chr2.3:48261798-48261817 MS.gene037192:intron 35.0%
GAAGAATAAGAAGATGAAGG+AGG + chr2.3:48259957-48259976 MS.gene037192:CDS 35.0%
GAAGGGACTATAATTCAAAG+GGG - chr2.3:48261037-48261056 None:intergenic 35.0%
GATCACAGAGATAAAATGTG+AGG - chr2.3:48261083-48261102 None:intergenic 35.0%
GATTTGTGGATTCATTTAGC+AGG + chr2.3:48262233-48262252 MS.gene037192:intron 35.0%
GCAATGTAACCATATCTACT+TGG - chr2.3:48262084-48262103 None:intergenic 35.0%
GCTAAATGAATCCACAAATC+AGG - chr2.3:48262233-48262252 None:intergenic 35.0%
GGGAGAATCAAACATATGAA+AGG + chr2.3:48260935-48260954 MS.gene037192:CDS 35.0%
TCATGTTTATCAGGTGAGAA+AGG + chr2.3:48261830-48261849 MS.gene037192:intron 35.0%
TGCATGTGGACAGAAATAAT+AGG + chr2.3:48262273-48262292 MS.gene037192:CDS 35.0%
! AATATCCGATATTTGCTGCA+AGG + chr2.3:48261909-48261928 MS.gene037192:CDS 35.0%
! TGTGCTTGATGAAGAGTTTT+GGG + chr2.3:48260134-48260153 MS.gene037192:CDS 35.0%
! TTTTGGTACAATAACTGTCC+AGG - chr2.3:48262299-48262318 None:intergenic 35.0%
!! AGTGGGTCCCAATTATTTTA+GGG + chr2.3:48261153-48261172 MS.gene037192:intron 35.0%
!! CAAAAGGAAATTTGCTGATC+AGG + chr2.3:48261487-48261506 MS.gene037192:CDS 35.0%
!! TAGTGGGTCCCAATTATTTT+AGG + chr2.3:48261152-48261171 MS.gene037192:intron 35.0%
AAACCTTCTTCCACCACTTT+AGG - chr2.3:48260015-48260034 None:intergenic 40.0%
AACACAACAACCACGATGAA+AGG - chr2.3:48261234-48261253 None:intergenic 40.0%
AAGTGATTTACACCCACAAC+CGG - chr2.3:48261389-48261408 None:intergenic 40.0%
AATGCTGATATGGCAGTTAG+TGG + chr2.3:48261135-48261154 MS.gene037192:intron 40.0%
AGAACACCACCAAGTAGATA+TGG + chr2.3:48262072-48262091 MS.gene037192:CDS 40.0%
ATGATTCGACTTACGGTGTT+TGG + chr2.3:48261805-48261824 MS.gene037192:intron 40.0%
ATGCTGATATGGCAGTTAGT+GGG + chr2.3:48261136-48261155 MS.gene037192:intron 40.0%
ATTTCGCCGTCAATTTCAGA+TGG + chr2.3:48262411-48262430 MS.gene037192:intron 40.0%
CCCTGCTGTTAATTCTCTAA+CGG + chr2.3:48261112-48261131 MS.gene037192:intron 40.0%
CCGTTAGAGAATTAACAGCA+GGG - chr2.3:48261115-48261134 None:intergenic 40.0%
CGTAAGTCGAATCATAGTCA+AGG - chr2.3:48261800-48261819 None:intergenic 40.0%
CTAATCAACTCTTGTTCCGA+CGG - chr2.3:48260072-48260091 None:intergenic 40.0%
TACTGTTCTGTCTAGACTGA+TGG + chr2.3:48261970-48261989 MS.gene037192:intron 40.0%
TCCAATTGTTCCTAAAGTGG+TGG + chr2.3:48260002-48260021 MS.gene037192:CDS 40.0%
TCCGTTAGAGAATTAACAGC+AGG - chr2.3:48261116-48261135 None:intergenic 40.0%
TCTCTAACGGAATGCTGATA+TGG + chr2.3:48261125-48261144 MS.gene037192:intron 40.0%
TCTCTCCTTGCAGCAAATAT+CGG - chr2.3:48261917-48261936 None:intergenic 40.0%
TGACATCATCCATCTTGATC+TGG - chr2.3:48261315-48261334 None:intergenic 40.0%
TGGTTGAAACTGCAAACTCT+CGG + chr2.3:48262431-48262450 MS.gene037192:CDS 40.0%
TTTGCTGATCAGGTAGGAAT+CGG + chr2.3:48261497-48261516 MS.gene037192:intron 40.0%
! CGAATGGTCTTCGATTTGAT+CGG + chr2.3:48260040-48260059 MS.gene037192:CDS 40.0%
! CTGTGCTTGATGAAGAGTTT+TGG + chr2.3:48260133-48260152 MS.gene037192:CDS 40.0%
! TATGGTTTACGCCTGATTTG+TGG + chr2.3:48262219-48262238 MS.gene037192:intron 40.0%
! TCCACCACTTTAGGAACAAT+TGG - chr2.3:48260006-48260025 None:intergenic 40.0%
! TTACCTCAAAGCCCATCTTT+TGG - chr2.3:48262316-48262335 None:intergenic 40.0%
!! AGGAAATTTGCTGATCAGGT+AGG + chr2.3:48261491-48261510 MS.gene037192:intron 40.0%
!! AGTTTGGGCAATTTGTTGCT+AGG + chr2.3:48260106-48260125 MS.gene037192:CDS 40.0%
!! GTTTGGGCAATTTGTTGCTA+GGG + chr2.3:48260107-48260126 MS.gene037192:CDS 40.0%
AAACTCTCGGTTGTTACCAG+AGG + chr2.3:48262444-48262463 MS.gene037192:CDS 45.0%
CGTAGCAAGTATGTTTCCTC+TGG - chr2.3:48262463-48262482 None:intergenic 45.0%
GAAAGAATGAGTAGTACCCC+AGG - chr2.3:48261945-48261964 None:intergenic 45.0%
GAAGAAGGTTTCAGCTCGAA+TGG + chr2.3:48260024-48260043 MS.gene037192:CDS 45.0%
GAGTCAGGTATATGTGCATG+TGG + chr2.3:48262259-48262278 MS.gene037192:CDS 45.0%
GCTAAGGGCAGAAAGTCATT+GGG + chr2.3:48260915-48260934 MS.gene037192:CDS 45.0%
GTGGACAGAAATAATAGGCC+TGG + chr2.3:48262278-48262297 MS.gene037192:CDS 45.0%
TCATTTAGCAGGTGTGAGTC+AGG + chr2.3:48262244-48262263 MS.gene037192:intron 45.0%
! GTACCAAAAGATGGGCTTTG+AGG + chr2.3:48262310-48262329 MS.gene037192:CDS 45.0%
! GTTCCTAAAGTGGTGGAAGA+AGG + chr2.3:48260009-48260028 MS.gene037192:CDS 45.0%
! TCAAAGGGGCGCAAAATGTA+AGG - chr2.3:48261023-48261042 None:intergenic 45.0%
! TGAATGACTCTACCGGTTGT+GGG + chr2.3:48261374-48261393 MS.gene037192:intron 45.0%
! TGCAAGGAGAGACTTTTCCT+GGG + chr2.3:48261925-48261944 MS.gene037192:CDS 45.0%
AAGCGGTGCAAGGTGCAAAA+TGG + chr2.3:48261617-48261636 MS.gene037192:CDS 50.0%
AGCGGTGCAAGGTGCAAAAT+GGG + chr2.3:48261618-48261637 MS.gene037192:CDS 50.0%
ATGACTTTCTGCCCTTAGCC+AGG - chr2.3:48260914-48260933 None:intergenic 50.0%
ATTTGATCGGTTGCAGCCGT+CGG + chr2.3:48260053-48260072 MS.gene037192:CDS 50.0%
GGCTAAGGGCAGAAAGTCAT+TGG + chr2.3:48260914-48260933 MS.gene037192:CDS 50.0%
TCCTTGTCGACGAGCCAATT+TGG - chr2.3:48262121-48262140 None:intergenic 50.0%
TGCGGTAAAAAAGCGGTGCA+AGG + chr2.3:48261607-48261626 MS.gene037192:CDS 50.0%
! CTGAATGACTCTACCGGTTG+TGG + chr2.3:48261373-48261392 MS.gene037192:intron 50.0%
! CTGCAAGGAGAGACTTTTCC+TGG + chr2.3:48261924-48261943 MS.gene037192:CDS 50.0%
! GCAAGGAGAGACTTTTCCTG+GGG + chr2.3:48261926-48261945 MS.gene037192:CDS 50.0%
! TTCTTTTGCAGACAGCAGCC+TGG + chr2.3:48260893-48260912 MS.gene037192:intron 50.0%
CAGCTGCGCATGCATTATCG+CGG + chr2.3:48261643-48261662 MS.gene037192:CDS 55.0%
GCGGTGCAAGGTGCAAAATG+GGG + chr2.3:48261619-48261638 MS.gene037192:CDS 55.0%
GCTGATCAGGTAGGAATCGG+CGG + chr2.3:48261500-48261519 MS.gene037192:intron 55.0%
!! GCCAAATTGGCTCGTCGACA+AGG + chr2.3:48262117-48262136 MS.gene037192:CDS 55.0%
GCAGACAGCAGCCTGGCTAA+GGG + chr2.3:48260900-48260919 MS.gene037192:intron 60.0%
TGCAGACAGCAGCCTGGCTA+AGG + chr2.3:48260899-48260918 MS.gene037192:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 48259937 48262495 48259937 ID=MS.gene037192
chr2.3 mRNA 48259937 48262495 48259937 ID=MS.gene037192.t1;Parent=MS.gene037192
chr2.3 exon 48259937 48260155 48259937 ID=MS.gene037192.t1.exon1;Parent=MS.gene037192.t1
chr2.3 CDS 48259937 48260155 48259937 ID=cds.MS.gene037192.t1;Parent=MS.gene037192.t1
chr2.3 exon 48260904 48260956 48260904 ID=MS.gene037192.t1.exon2;Parent=MS.gene037192.t1
chr2.3 CDS 48260904 48260956 48260904 ID=cds.MS.gene037192.t1;Parent=MS.gene037192.t1
chr2.3 exon 48261472 48261508 48261472 ID=MS.gene037192.t1.exon3;Parent=MS.gene037192.t1
chr2.3 CDS 48261472 48261508 48261472 ID=cds.MS.gene037192.t1;Parent=MS.gene037192.t1
chr2.3 exon 48261599 48261664 48261599 ID=MS.gene037192.t1.exon4;Parent=MS.gene037192.t1
chr2.3 CDS 48261599 48261664 48261599 ID=cds.MS.gene037192.t1;Parent=MS.gene037192.t1
chr2.3 exon 48261843 48261947 48261843 ID=MS.gene037192.t1.exon5;Parent=MS.gene037192.t1
chr2.3 CDS 48261843 48261947 48261843 ID=cds.MS.gene037192.t1;Parent=MS.gene037192.t1
chr2.3 exon 48262036 48262189 48262036 ID=MS.gene037192.t1.exon6;Parent=MS.gene037192.t1
chr2.3 CDS 48262036 48262189 48262036 ID=cds.MS.gene037192.t1;Parent=MS.gene037192.t1
chr2.3 exon 48262255 48262331 48262255 ID=MS.gene037192.t1.exon7;Parent=MS.gene037192.t1
chr2.3 CDS 48262255 48262331 48262255 ID=cds.MS.gene037192.t1;Parent=MS.gene037192.t1
chr2.3 exon 48262430 48262495 48262430 ID=MS.gene037192.t1.exon8;Parent=MS.gene037192.t1
chr2.3 CDS 48262430 48262495 48262430 ID=cds.MS.gene037192.t1;Parent=MS.gene037192.t1
Gene Sequence

>MS.gene037192

ATGAATAGTAATAATGATATGAAGAATAAGAAGATGAAGGAGGAACTATCTGTGAAGATTTCAAGTCCAATTGTTCCTAAAGTGGTGGAAGAAGGTTTCAGCTCGAATGGTCTTCGATTTGATCGGTTGCAGCCGTCGGAACAAGAGTTGATTAGAGAAAATAGATTTGAGTTTGGGCAATTTGTTGCTAGGGAAGCTGTGCTTGATGAAGAGTTTTGGGTATGTTTTAAACTGTTGGATAGAAAGAAGCCCGTTTGAATTTGTTTATTTTTTAGCTTATGAAAAATAATTTATGCAAATAAATAAATTTTTATGTTAATTCATGAGTTCTCACTAACGATAATTGTATCTTCATAAGCTGTTTTTTCATAAACTACTTTGACAAGTTTATGAATAATGCATAAAAGCTTATATTATTTGCATAAGCTCATAAATCAGTCAATTCAAATGGGCCCTTAGTGTATGAAATTGTATGGTTAGTCGATTCTTTTTTGAAATTAATACTAAAATGATGTTTGAAATTGAAAATTCTCAAGGTTTGTTTGATAGTGAATATTCAATTTATTGTCTGACTTGTAGGATTAGTTGATTTGGTTTTGAAATCAACAAAATTTTATTATTATGATGCTTGAAATTGTAAATCTTCGATCATCTTAGAGATTAAATAAACTGATCTAAAATGACTAGTGTGATCGTTGATTACCAAATTTCTACAATTTCATGAACTAAAATGGTGATTTGCTTTGTCTGTCTTTTAGGAGTAGATTGATAAGTAAAGCTGTTTTTTAGTTGAAGATGAAAAAGAAAGAAGAAATAAAGCTTAACCTAATGTTGGAATCAAAGAAAAATTGTTTTATAAGTGCACACAACCAATCATTTATCATTCATTTGTACTTTTGTGGAAAAAATAATATACAAAAAATAGCATTTTCTTTTATTTATTGTATATTTTTGAATTCTTTTGCAGACAGCAGCCTGGCTAAGGGCAGAAAGTCATTGGGAGAATCAAACATATGAAAGGTATGATACAAAATACATCACAAATCTTCAATGTTTTTTCATAGGGTTAAATATGTTTTTAGTCCTTACATTTTGCGCCCCTTTGAATTATAGTCCCTTCATTTCATTAAATGTTTTTAAAATCCTCACATTTTATCTCTGTGATCAAAAATAGTCCCTGCTGTTAATTCTCTAACGGAATGCTGATATGGCAGTTAGTGGGTCCCAATTATTTTAGGGTTAAATATGTTTTTCATACATAAGGATTCTGTAGAATGAATTGATAAAATGTGTTCCTTTCATCGTGGTTGTTGTGTTATTGTGTAAAACTTGTGTTGAGCATATTGTGGTACTTGATTTGAGAACAGATTATAAACCAGATCAAGATGGATGATGTCAATAATCAGTTTTCTAAATAGTAGAATATAGGAAGTAATCTGAATGACTCTACCGGTTGTGGGTGTAAATCACTTGACTTGATTAACAATAGGTAAGAATTTGGGTAGTACTAACTGCAATTATGTTTTTTTTTTTAGATATATTGATATCTACAAAAGGAAATTTGCTGATCAGGTAGGAATCGGCGGTGCTTAATTTCCTTACTTAGTACTATACACTGGAGTGTCTTTCATGAAAATTTTAACAAGAATCCCTATTGTTTAGGAATTTAATGCGGTAAAAAAGCGGTGCAAGGTGCAAAATGGGGACAGCTGCGCATGCATTATCGCGGTAAATCAATCTCATCTGAGATTCTGATCTAGTTAAAAAAATTCAGGTTACAAAAAAATATATACTTTAAAGCTCCAACTTTGATTAAAGCTCTAACTTTGTTGAGTTATTTACTGTTTGAAAGTTGATTTTCCTTGACTATGATTCGACTTACGGTGTTTGGATTCATGTTTATCAGGTGAGAAAGGAGCAGAAGAATGTAAAGCGCTCGATAATAAAAAGTGTTGTAGGAACACTTGACTTGAATATCCGATATTTGCTGCAAGGAGAGACTTTTCCTGGGGTACTACTCATTCTTTCTCATCTACTGTTCTGTCTAGACTGATGGTCTTGATGTTTTTCACGACTTAGTCATCATATCATTTCTGCAGGAACGAGACAAAACTCCTTTTTGTTGCAGCATAAACAGAACACCACCAAGTAGATATGGTTACATTGCAAATTTATGTGTTGCCAAATTGGCTCGTCGACAAGGAATTGCAAGCAACATGATGTCTTTTGCTGTTGAAAATGCAAAATCTAATGGTAATATTAACGTTAAGTTGAAGTAACTTTATGGTTTACGCCTGATTTGTGGATTCATTTAGCAGGTGTGAGTCAGGTATATGTGCATGTGGACAGAAATAATAGGCCTGGACAGTTATTGTACCAAAAGATGGGCTTTGAGGTAATGTAATTGTTGGTTCATCTGTATTTCCAATTTTTGTTATAGATTGTTGCTACATGTGAAATCAATAACTATGGCAATTTCGCCGTCAATTTCAGATGGTTGAAACTGCAAACTCTCGGTTGTTACCAGAGGAAACATACTTGCTACGTTTACAGACGTAA
Protein sequence

>MS.gene037192.t1

MNSNNDMKNKKMKEELSVKISSPIVPKVVEEGFSSNGLRFDRLQPSEQELIRENRFEFGQFVAREAVLDEEFWTAAWLRAESHWENQTYERYIDIYKRKFADQEFNAVKKRCKVQNGDSCACIIAVRKEQKNVKRSIIKSVVGTLDLNIRYLLQGETFPGERDKTPFCCSINRTPPSRYGYIANLCVAKLARRQGIASNMMSFAVENAKSNGVSQVYVHVDRNNRPGQLLYQKMGFEMVETANSRLLPEETYLLRLQT