Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037224.t1 | RHN45260.1 | 89.7 | 156 | 16 | 0 | 4 | 159 | 270 | 425 | 1.40E-72 | 282.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037224.t1 | Q9S7L2 | 65.2 | 69 | 24 | 0 | 5 | 73 | 269 | 337 | 1.6e-18 | 94.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037224.t1 | A0A396GW50 | 89.7 | 156 | 16 | 0 | 4 | 159 | 270 | 425 | 9.8e-73 | 282.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037224.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037224.t1 | MTR_7g037260 | 92.258 | 155 | 12 | 0 | 5 | 159 | 197 | 351 | 1.53e-100 | 293 |
| MS.gene037224.t1 | MTR_7g037130 | 88.750 | 160 | 15 | 1 | 3 | 159 | 192 | 351 | 2.45e-99 | 290 |
| MS.gene037224.t1 | MTR_7g451170 | 71.166 | 163 | 39 | 1 | 5 | 159 | 243 | 405 | 1.32e-76 | 234 |
| MS.gene037224.t1 | MTR_4g088015 | 69.325 | 163 | 42 | 1 | 5 | 159 | 273 | 435 | 9.67e-70 | 217 |
| MS.gene037224.t1 | MTR_7g035350 | 52.976 | 168 | 56 | 4 | 5 | 150 | 277 | 443 | 4.90e-47 | 158 |
| MS.gene037224.t1 | MTR_1g057980 | 53.049 | 164 | 58 | 4 | 5 | 150 | 132 | 294 | 6.36e-42 | 141 |
| MS.gene037224.t1 | MTR_7g450950 | 52.174 | 138 | 48 | 3 | 5 | 140 | 209 | 330 | 4.28e-35 | 125 |
| MS.gene037224.t1 | MTR_7g035300 | 39.610 | 154 | 49 | 3 | 6 | 159 | 117 | 226 | 1.25e-27 | 103 |
| MS.gene037224.t1 | MTR_3g077650 | 69.565 | 69 | 21 | 0 | 5 | 73 | 233 | 301 | 5.88e-27 | 105 |
| MS.gene037224.t1 | MTR_4g105660 | 65.217 | 69 | 24 | 0 | 5 | 73 | 232 | 300 | 9.08e-26 | 101 |
| MS.gene037224.t1 | MTR_5g070020 | 56.164 | 73 | 30 | 1 | 5 | 75 | 174 | 246 | 2.33e-22 | 91.7 |
| MS.gene037224.t1 | MTR_3g463400 | 53.165 | 79 | 32 | 2 | 5 | 78 | 185 | 263 | 3.31e-22 | 92.0 |
| MS.gene037224.t1 | MTR_5g049190 | 36.313 | 179 | 76 | 8 | 5 | 159 | 71 | 235 | 8.82e-20 | 82.8 |
| MS.gene037224.t1 | MTR_4g019370 | 56.863 | 51 | 22 | 0 | 5 | 55 | 90 | 140 | 1.04e-15 | 73.2 |
| MS.gene037224.t1 | MTR_1g026870 | 55.102 | 49 | 22 | 0 | 5 | 53 | 137 | 185 | 1.59e-14 | 70.5 |
| MS.gene037224.t1 | MTR_3g110028 | 53.061 | 49 | 23 | 0 | 5 | 53 | 137 | 185 | 2.01e-14 | 70.1 |
| MS.gene037224.t1 | MTR_4g094982 | 55.769 | 52 | 23 | 0 | 2 | 53 | 54 | 105 | 4.55e-14 | 68.2 |
| MS.gene037224.t1 | MTR_5g016510 | 55.769 | 52 | 23 | 0 | 2 | 53 | 54 | 105 | 6.59e-14 | 67.8 |
| MS.gene037224.t1 | MTR_7g061330 | 55.102 | 49 | 22 | 0 | 5 | 53 | 165 | 213 | 1.82e-13 | 67.0 |
| MS.gene037224.t1 | MTR_7g461410 | 55.102 | 49 | 22 | 0 | 5 | 53 | 165 | 213 | 1.82e-13 | 67.0 |
| MS.gene037224.t1 | MTR_7g061330 | 55.102 | 49 | 22 | 0 | 5 | 53 | 129 | 177 | 2.72e-13 | 66.6 |
| MS.gene037224.t1 | MTR_5g041570 | 50.909 | 55 | 27 | 0 | 5 | 59 | 186 | 240 | 6.30e-13 | 65.5 |
| MS.gene037224.t1 | MTR_5g082910 | 61.905 | 42 | 16 | 0 | 8 | 49 | 74 | 115 | 1.50e-12 | 63.9 |
| MS.gene037224.t1 | MTR_2g064160 | 47.059 | 51 | 27 | 0 | 7 | 57 | 68 | 118 | 7.09e-12 | 62.4 |
| MS.gene037224.t1 | MTR_6g055910 | 29.114 | 158 | 80 | 7 | 10 | 142 | 5 | 155 | 7.97e-12 | 61.2 |
| MS.gene037224.t1 | MTR_4g082040 | 47.170 | 53 | 28 | 0 | 5 | 57 | 157 | 209 | 1.33e-11 | 61.6 |
| MS.gene037224.t1 | MTR_4g073420 | 51.852 | 54 | 23 | 1 | 8 | 61 | 70 | 120 | 1.42e-11 | 61.2 |
| MS.gene037224.t1 | MTR_6g055910 | 29.114 | 158 | 80 | 7 | 10 | 142 | 46 | 196 | 1.70e-11 | 60.8 |
| MS.gene037224.t1 | MTR_5g010650 | 58.140 | 43 | 18 | 0 | 5 | 47 | 162 | 204 | 1.84e-11 | 61.2 |
| MS.gene037224.t1 | MTR_3g101290 | 55.556 | 45 | 20 | 0 | 9 | 53 | 93 | 137 | 2.37e-11 | 60.1 |
| MS.gene037224.t1 | MTR_6g055910 | 29.114 | 158 | 80 | 7 | 10 | 142 | 75 | 225 | 2.45e-11 | 60.5 |
| MS.gene037224.t1 | MTR_8g095390 | 46.939 | 49 | 26 | 0 | 5 | 53 | 67 | 115 | 3.20e-11 | 60.5 |
| MS.gene037224.t1 | MTR_5g029840 | 32.967 | 91 | 50 | 1 | 8 | 98 | 70 | 149 | 3.75e-11 | 60.1 |
| MS.gene037224.t1 | MTR_6g015455 | 55.319 | 47 | 21 | 0 | 7 | 53 | 59 | 105 | 3.83e-11 | 60.5 |
| MS.gene037224.t1 | MTR_6g074860 | 49.057 | 53 | 27 | 0 | 5 | 57 | 56 | 108 | 5.03e-11 | 59.3 |
| MS.gene037224.t1 | MTR_8g017390 | 41.509 | 53 | 31 | 0 | 7 | 59 | 70 | 122 | 5.65e-11 | 60.1 |
| MS.gene037224.t1 | MTR_8g017500 | 46.809 | 47 | 25 | 0 | 7 | 53 | 69 | 115 | 6.43e-11 | 59.7 |
| MS.gene037224.t1 | MTR_3g052450 | 50.980 | 51 | 24 | 1 | 5 | 54 | 95 | 145 | 7.59e-11 | 59.7 |
| MS.gene037224.t1 | MTR_8g017440 | 46.809 | 47 | 25 | 0 | 7 | 53 | 69 | 115 | 8.55e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037224.t1 | AT4G18770 | 65.217 | 69 | 24 | 0 | 5 | 73 | 269 | 337 | 1.25e-25 | 101 |
| MS.gene037224.t1 | AT5G40360 | 58.667 | 75 | 29 | 1 | 5 | 77 | 210 | 284 | 1.12e-21 | 89.7 |
| MS.gene037224.t1 | AT3G27785 | 59.740 | 77 | 27 | 2 | 5 | 77 | 241 | 317 | 2.85e-21 | 89.4 |
| MS.gene037224.t1 | AT5G11050 | 64.286 | 56 | 20 | 0 | 5 | 60 | 157 | 212 | 1.76e-20 | 87.0 |
| MS.gene037224.t1 | AT5G58850 | 38.462 | 143 | 67 | 5 | 5 | 129 | 157 | 296 | 6.20e-20 | 85.5 |
| MS.gene037224.t1 | AT2G25230 | 50.685 | 73 | 36 | 0 | 5 | 77 | 78 | 150 | 3.19e-19 | 81.3 |
| MS.gene037224.t1 | AT5G40430 | 47.945 | 73 | 38 | 0 | 5 | 77 | 105 | 177 | 7.23e-17 | 75.5 |
| MS.gene037224.t1 | AT3G55730 | 51.667 | 60 | 28 | 1 | 3 | 61 | 105 | 164 | 4.81e-15 | 71.6 |
| MS.gene037224.t1 | AT3G09230 | 46.269 | 67 | 36 | 0 | 4 | 70 | 106 | 172 | 1.57e-14 | 70.1 |
| MS.gene037224.t1 | AT5G17800 | 33.582 | 134 | 81 | 2 | 5 | 138 | 145 | 270 | 5.55e-14 | 68.2 |
| MS.gene037224.t1 | AT4G32730 | 53.061 | 49 | 23 | 0 | 5 | 53 | 139 | 187 | 1.80e-13 | 67.4 |
| MS.gene037224.t1 | AT4G32730 | 53.061 | 49 | 23 | 0 | 5 | 53 | 139 | 187 | 1.80e-13 | 67.4 |
| MS.gene037224.t1 | AT4G32730 | 53.061 | 49 | 23 | 0 | 5 | 53 | 139 | 187 | 1.80e-13 | 67.4 |
| MS.gene037224.t1 | AT4G32730 | 53.061 | 49 | 23 | 0 | 5 | 53 | 139 | 187 | 1.80e-13 | 67.4 |
| MS.gene037224.t1 | AT4G32730 | 53.061 | 49 | 23 | 0 | 5 | 53 | 139 | 187 | 2.35e-13 | 67.0 |
| MS.gene037224.t1 | AT5G11510 | 48.980 | 49 | 25 | 0 | 5 | 53 | 133 | 181 | 3.94e-13 | 66.2 |
| MS.gene037224.t1 | AT5G11510 | 48.980 | 49 | 25 | 0 | 5 | 53 | 133 | 181 | 3.94e-13 | 66.2 |
| MS.gene037224.t1 | AT5G11510 | 48.980 | 49 | 25 | 0 | 5 | 53 | 133 | 181 | 3.94e-13 | 66.2 |
| MS.gene037224.t1 | AT5G11510 | 48.980 | 49 | 25 | 0 | 5 | 53 | 133 | 181 | 4.04e-13 | 66.2 |
| MS.gene037224.t1 | AT5G11510 | 48.980 | 49 | 25 | 0 | 5 | 53 | 133 | 181 | 4.10e-13 | 66.2 |
| MS.gene037224.t1 | AT1G69560 | 42.857 | 70 | 40 | 0 | 5 | 74 | 175 | 244 | 4.19e-13 | 65.9 |
| MS.gene037224.t1 | AT1G69560 | 42.857 | 70 | 40 | 0 | 5 | 74 | 159 | 228 | 5.73e-13 | 65.5 |
| MS.gene037224.t1 | AT5G02320 | 51.020 | 49 | 24 | 0 | 5 | 53 | 179 | 227 | 5.85e-13 | 65.9 |
| MS.gene037224.t1 | AT5G02320 | 51.020 | 49 | 24 | 0 | 5 | 53 | 179 | 227 | 5.85e-13 | 65.9 |
| MS.gene037224.t1 | AT5G02320 | 51.020 | 49 | 24 | 0 | 5 | 53 | 119 | 167 | 7.59e-13 | 65.5 |
| MS.gene037224.t1 | AT3G09370 | 53.061 | 49 | 23 | 0 | 5 | 53 | 195 | 243 | 9.25e-13 | 65.1 |
| MS.gene037224.t1 | AT3G09370 | 53.061 | 49 | 23 | 0 | 5 | 53 | 187 | 235 | 9.40e-13 | 65.1 |
| MS.gene037224.t1 | AT3G09370 | 53.061 | 49 | 23 | 0 | 5 | 53 | 182 | 230 | 1.09e-12 | 65.1 |
| MS.gene037224.t1 | AT4G00540 | 54.000 | 50 | 23 | 0 | 4 | 53 | 157 | 206 | 1.33e-12 | 64.7 |
| MS.gene037224.t1 | AT4G00540 | 54.000 | 50 | 23 | 0 | 4 | 53 | 155 | 204 | 1.56e-12 | 64.3 |
| MS.gene037224.t1 | AT1G09540 | 30.827 | 133 | 80 | 4 | 7 | 136 | 69 | 192 | 1.56e-12 | 64.3 |
| MS.gene037224.t1 | AT4G37260 | 51.852 | 54 | 25 | 1 | 7 | 59 | 67 | 120 | 2.13e-12 | 63.9 |
| MS.gene037224.t1 | AT5G67300 | 48.333 | 60 | 31 | 0 | 2 | 61 | 55 | 114 | 2.72e-12 | 63.5 |
| MS.gene037224.t1 | AT1G57560 | 27.950 | 161 | 95 | 4 | 7 | 159 | 69 | 216 | 2.99e-12 | 63.2 |
| MS.gene037224.t1 | AT3G12720 | 49.020 | 51 | 26 | 0 | 7 | 57 | 79 | 129 | 3.10e-12 | 63.2 |
| MS.gene037224.t1 | AT2G23290 | 58.696 | 46 | 19 | 0 | 8 | 53 | 68 | 113 | 3.19e-12 | 63.2 |
| MS.gene037224.t1 | AT4G09460 | 30.000 | 140 | 88 | 2 | 9 | 141 | 71 | 207 | 3.77e-12 | 62.4 |
| MS.gene037224.t1 | AT4G38620 | 51.852 | 54 | 23 | 1 | 8 | 61 | 70 | 120 | 4.95e-12 | 62.4 |
| MS.gene037224.t1 | AT1G26780 | 51.923 | 52 | 25 | 0 | 5 | 56 | 150 | 201 | 5.18e-12 | 62.8 |
| MS.gene037224.t1 | AT1G26780 | 51.923 | 52 | 25 | 0 | 5 | 56 | 150 | 201 | 7.00e-12 | 62.0 |
| MS.gene037224.t1 | AT5G14750 | 30.252 | 119 | 74 | 3 | 7 | 121 | 12 | 125 | 9.97e-12 | 59.7 |
| MS.gene037224.t1 | AT5G14750 | 30.252 | 119 | 74 | 3 | 7 | 121 | 12 | 125 | 9.97e-12 | 59.7 |
| MS.gene037224.t1 | AT2G32460 | 51.923 | 52 | 24 | 1 | 5 | 55 | 73 | 124 | 1.57e-11 | 61.6 |
| MS.gene037224.t1 | AT2G32460 | 51.923 | 52 | 24 | 1 | 5 | 55 | 61 | 112 | 1.62e-11 | 61.6 |
| MS.gene037224.t1 | AT5G14750 | 30.252 | 119 | 74 | 3 | 7 | 121 | 39 | 152 | 2.28e-11 | 59.3 |
| MS.gene037224.t1 | AT1G22640 | 44.828 | 58 | 32 | 0 | 8 | 65 | 13 | 70 | 2.62e-11 | 59.7 |
| MS.gene037224.t1 | AT3G53200 | 34.074 | 135 | 63 | 6 | 9 | 120 | 35 | 166 | 2.76e-11 | 59.7 |
| MS.gene037224.t1 | AT3G50060 | 54.348 | 46 | 21 | 0 | 8 | 53 | 61 | 106 | 2.90e-11 | 60.5 |
| MS.gene037224.t1 | AT4G33450 | 51.923 | 52 | 25 | 0 | 5 | 56 | 71 | 122 | 3.12e-11 | 60.1 |
| MS.gene037224.t1 | AT1G17950 | 41.791 | 67 | 36 | 1 | 5 | 68 | 57 | 123 | 3.97e-11 | 59.7 |
| MS.gene037224.t1 | AT3G53200 | 34.074 | 135 | 63 | 6 | 9 | 120 | 68 | 199 | 4.97e-11 | 59.3 |
| MS.gene037224.t1 | AT3G28470 | 48.837 | 43 | 22 | 0 | 6 | 48 | 68 | 110 | 5.84e-11 | 59.7 |
| MS.gene037224.t1 | AT2G39880 | 41.509 | 53 | 31 | 0 | 5 | 57 | 102 | 154 | 6.71e-11 | 59.7 |
| MS.gene037224.t1 | AT5G14750 | 30.769 | 117 | 72 | 3 | 9 | 121 | 75 | 186 | 7.12e-11 | 58.5 |
| MS.gene037224.t1 | AT3G11440 | 46.154 | 52 | 27 | 1 | 5 | 55 | 96 | 147 | 8.50e-11 | 59.7 |
| MS.gene037224.t1 | AT4G28110 | 51.111 | 45 | 22 | 0 | 11 | 55 | 73 | 117 | 8.51e-11 | 58.9 |
Find 40 sgRNAs with CRISPR-Local
Find 47 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTCTTCTTCTCGACTTTC+TGG | 0.103042 | 7.3:+62579506 | None:intergenic |
| CTCTCAGAACTTTCATAATT+TGG | 0.107846 | 7.3:+62579364 | None:intergenic |
| TCCTGCTTTATAGGAATTTC+AGG | 0.178416 | 7.3:+62579220 | None:intergenic |
| AGGTCAATTTCCTGCTTTAT+AGG | 0.200831 | 7.3:+62579211 | None:intergenic |
| TAGCCACCAATTTCATCTTC+TGG | 0.310919 | 7.3:+62579313 | None:intergenic |
| ACTACTCCAGAAGATGAAAT+TGG | 0.319338 | 7.3:-62579319 | MS.gene037224:CDS |
| TATCTGAGCATGATGAATAT+CGG | 0.354011 | 7.3:-62579394 | MS.gene037224:CDS |
| GACTTTCTGGCGGCGCTTAG+TGG | 0.354484 | 7.3:+62579519 | None:intergenic |
| GTGGTTCTTGACGGAGTTCT+CGG | 0.386546 | 7.3:+62579549 | None:intergenic |
| ACAAGTGGGTTTGGATCAAA+TGG | 0.404523 | 7.3:-62579256 | MS.gene037224:CDS |
| GATGGAATGACAAGTGGGTT+TGG | 0.405842 | 7.3:-62579265 | MS.gene037224:CDS |
| GAAATTGCAAGGAGATTGTC+GGG | 0.423852 | 7.3:-62579577 | MS.gene037224:CDS |
| GGCGTTCCAGTGGTTCTTGA+CGG | 0.436794 | 7.3:+62579540 | None:intergenic |
| TCATCATCATTGAACATCAT+TGG | 0.444693 | 7.3:+62579286 | None:intergenic |
| TCCTGAAATTCCTATAAAGC+AGG | 0.453856 | 7.3:-62579221 | MS.gene037224:CDS |
| TTCTGCTACGAAAGTTGATA+AGG | 0.456367 | 7.3:-62579431 | MS.gene037224:CDS |
| ATCTGAGCATGATGAATATC+GGG | 0.464340 | 7.3:-62579393 | MS.gene037224:CDS |
| GGAAATTGCAAGGAGATTGT+CGG | 0.469088 | 7.3:-62579578 | MS.gene037224:CDS |
| ACCTTAAGAGTTTCTATATG+AGG | 0.481236 | 7.3:+62579191 | None:intergenic |
| ATCGAAGCTCACAAGATAGT+TGG | 0.496519 | 7.3:-62579613 | MS.gene037224:CDS |
| GAAAGTCGAGAAGAAGAATC+GGG | 0.504233 | 7.3:-62579503 | MS.gene037224:CDS |
| AGAAAGTCGAGAAGAAGAAT+CGG | 0.513201 | 7.3:-62579504 | MS.gene037224:CDS |
| AATGATTGAAGAAGGAGTCA+TGG | 0.525168 | 7.3:-62579660 | MS.gene037224:intron |
| GAATCGGGGTAACAGTTCAA+AGG | 0.553014 | 7.3:-62579488 | MS.gene037224:CDS |
| AATCGGGGTAACAGTTCAAA+GGG | 0.564615 | 7.3:-62579487 | MS.gene037224:CDS |
| GGCGCTTAGTGGCGTTCCAG+TGG | 0.575961 | 7.3:+62579530 | None:intergenic |
| AGAACTCCGTCAAGAACCAC+TGG | 0.577545 | 7.3:-62579546 | MS.gene037224:CDS |
| TGGGTTTGGATCAAATGGAA+TGG | 0.578195 | 7.3:-62579251 | MS.gene037224:CDS |
| ACAAGATAGTTGGTAACAAG+TGG | 0.585557 | 7.3:-62579603 | MS.gene037224:CDS |
| ATGATGTTCAATGATGATGA+TGG | 0.603439 | 7.3:-62579283 | MS.gene037224:CDS |
| ACAAGTGGGCGGAAATTGCA+AGG | 0.615105 | 7.3:-62579588 | MS.gene037224:CDS |
| ACTCCAGAAGATGAAATTGG+TGG | 0.615237 | 7.3:-62579316 | MS.gene037224:CDS |
| GAAGGAGTCATGGACCGAAG+AGG | 0.642730 | 7.3:-62579650 | MS.gene037224:CDS |
| GATGATGATGGAATGACAAG+TGG | 0.643214 | 7.3:-62579271 | MS.gene037224:CDS |
| ATGATGATGGAATGACAAGT+GGG | 0.653031 | 7.3:-62579270 | MS.gene037224:CDS |
| CAAGATAGTTGGTAACAAGT+GGG | 0.659165 | 7.3:-62579602 | MS.gene037224:CDS |
| TCTTCTTCTCGACTTTCTGG+CGG | 0.690126 | 7.3:+62579509 | None:intergenic |
| GATAGTTGGTAACAAGTGGG+CGG | 0.706945 | 7.3:-62579599 | MS.gene037224:CDS |
| AAAGTCGAGAAGAAGAATCG+GGG | 0.733429 | 7.3:-62579502 | MS.gene037224:CDS |
| AAATTGCAAGGAGATTGTCG+GGG | 0.751711 | 7.3:-62579576 | MS.gene037224:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTAATTCACCAATT+TGG | + | chr7.3:62579281-62579300 | None:intergenic | 15.0% |
| !! | CATTCAAAAAAGTTAATAAA+TGG | + | chr7.3:62579322-62579341 | None:intergenic | 15.0% |
| !! | TATAATTAAAATAGTGTACA+AGG | - | chr7.3:62579224-62579243 | MS.gene037224:CDS | 15.0% |
| !!! | ACTACTTTTGAAATACATAA+TGG | - | chr7.3:62579537-62579556 | MS.gene037224:CDS | 20.0% |
| ! | AGAATAAGCTATTACCAAAT+TGG | - | chr7.3:62579264-62579283 | MS.gene037224:CDS | 25.0% |
| !!! | CTTTTTTGAATGATTGAAGA+AGG | - | chr7.3:62579330-62579349 | MS.gene037224:CDS | 25.0% |
| CTCTCAGAACTTTCATAATT+TGG | + | chr7.3:62579637-62579656 | None:intergenic | 30.0% | |
| TATCTGAGCATGATGAATAT+CGG | - | chr7.3:62579604-62579623 | MS.gene037224:CDS | 30.0% | |
| TCATCATCATTGAACATCAT+TGG | + | chr7.3:62579715-62579734 | None:intergenic | 30.0% | |
| ! | ATGATGTTCAATGATGATGA+TGG | - | chr7.3:62579715-62579734 | MS.gene037224:intron | 30.0% |
| ! | CAATATTTTGTCTTCCTCTT+CGG | + | chr7.3:62579365-62579384 | None:intergenic | 30.0% |
| AATGATTGAAGAAGGAGTCA+TGG | - | chr7.3:62579338-62579357 | MS.gene037224:CDS | 35.0% | |
| ACTACTCCAGAAGATGAAAT+TGG | - | chr7.3:62579679-62579698 | MS.gene037224:intron | 35.0% | |
| AGAAAGTCGAGAAGAAGAAT+CGG | - | chr7.3:62579494-62579513 | MS.gene037224:CDS | 35.0% | |
| AGGTCAATTTCCTGCTTTAT+AGG | + | chr7.3:62579790-62579809 | None:intergenic | 35.0% | |
| ATCTGAGCATGATGAATATC+GGG | - | chr7.3:62579605-62579624 | MS.gene037224:CDS | 35.0% | |
| TCCTGAAATTCCTATAAAGC+AGG | - | chr7.3:62579777-62579796 | MS.gene037224:intron | 35.0% | |
| TCCTGCTTTATAGGAATTTC+AGG | + | chr7.3:62579781-62579800 | None:intergenic | 35.0% | |
| !! | ACAAGATAGTTGGTAACAAG+TGG | - | chr7.3:62579395-62579414 | MS.gene037224:CDS | 35.0% |
| !! | ATGATGATGGAATGACAAGT+GGG | - | chr7.3:62579728-62579747 | MS.gene037224:intron | 35.0% |
| !! | CAAGATAGTTGGTAACAAGT+GGG | - | chr7.3:62579396-62579415 | MS.gene037224:CDS | 35.0% |
| !! | TTCTGCTACGAAAGTTGATA+AGG | - | chr7.3:62579567-62579586 | MS.gene037224:CDS | 35.0% |
| !!! | GAGAGTGATTTTTTCTCTGA+AGG | - | chr7.3:62579652-62579671 | MS.gene037224:CDS | 35.0% |
| AAAGTCGAGAAGAAGAATCG+GGG | - | chr7.3:62579496-62579515 | MS.gene037224:CDS | 40.0% | |
| AAATTGCAAGGAGATTGTCG+GGG | - | chr7.3:62579422-62579441 | MS.gene037224:CDS | 40.0% | |
| AATCGGGGTAACAGTTCAAA+GGG | - | chr7.3:62579511-62579530 | MS.gene037224:CDS | 40.0% | |
| ACTCCAGAAGATGAAATTGG+TGG | - | chr7.3:62579682-62579701 | MS.gene037224:intron | 40.0% | |
| ATCGAAGCTCACAAGATAGT+TGG | - | chr7.3:62579385-62579404 | MS.gene037224:CDS | 40.0% | |
| GAAAGTCGAGAAGAAGAATC+GGG | - | chr7.3:62579495-62579514 | MS.gene037224:CDS | 40.0% | |
| GAAATTGCAAGGAGATTGTC+GGG | - | chr7.3:62579421-62579440 | MS.gene037224:CDS | 40.0% | |
| GATTCTTCTTCTCGACTTTC+TGG | + | chr7.3:62579495-62579514 | None:intergenic | 40.0% | |
| GGAAATTGCAAGGAGATTGT+CGG | - | chr7.3:62579420-62579439 | MS.gene037224:CDS | 40.0% | |
| TAGCCACCAATTTCATCTTC+TGG | + | chr7.3:62579688-62579707 | None:intergenic | 40.0% | |
| TGGGTTTGGATCAAATGGAA+TGG | - | chr7.3:62579747-62579766 | MS.gene037224:intron | 40.0% | |
| ! | ACAAGTGGGTTTGGATCAAA+TGG | - | chr7.3:62579742-62579761 | MS.gene037224:intron | 40.0% |
| !! | GATGATGATGGAATGACAAG+TGG | - | chr7.3:62579727-62579746 | MS.gene037224:intron | 40.0% |
| GAATCGGGGTAACAGTTCAA+AGG | - | chr7.3:62579510-62579529 | MS.gene037224:CDS | 45.0% | |
| TCTTCTTCTCGACTTTCTGG+CGG | + | chr7.3:62579492-62579511 | None:intergenic | 45.0% | |
| ! | GATGGAATGACAAGTGGGTT+TGG | - | chr7.3:62579733-62579752 | MS.gene037224:intron | 45.0% |
| !! | GATAGTTGGTAACAAGTGGG+CGG | - | chr7.3:62579399-62579418 | MS.gene037224:CDS | 45.0% |
| ACAAGTGGGCGGAAATTGCA+AGG | - | chr7.3:62579410-62579429 | MS.gene037224:CDS | 50.0% | |
| AGAACTCCGTCAAGAACCAC+TGG | - | chr7.3:62579452-62579471 | MS.gene037224:CDS | 50.0% | |
| GTGGTTCTTGACGGAGTTCT+CGG | + | chr7.3:62579452-62579471 | None:intergenic | 50.0% | |
| GAAGGAGTCATGGACCGAAG+AGG | - | chr7.3:62579348-62579367 | MS.gene037224:CDS | 55.0% | |
| GGCGTTCCAGTGGTTCTTGA+CGG | + | chr7.3:62579461-62579480 | None:intergenic | 55.0% | |
| ! | GACTTTCTGGCGGCGCTTAG+TGG | + | chr7.3:62579482-62579501 | None:intergenic | 60.0% |
| GGCGCTTAGTGGCGTTCCAG+TGG | + | chr7.3:62579471-62579490 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 62579204 | 62579816 | 62579204 | ID=MS.gene037224 |
| chr7.3 | mRNA | 62579204 | 62579816 | 62579204 | ID=MS.gene037224.t1;Parent=MS.gene037224 |
| chr7.3 | exon | 62579805 | 62579816 | 62579805 | ID=MS.gene037224.t1.exon1;Parent=MS.gene037224.t1 |
| chr7.3 | CDS | 62579805 | 62579816 | 62579805 | ID=cds.MS.gene037224.t1;Parent=MS.gene037224.t1 |
| chr7.3 | exon | 62579204 | 62579671 | 62579204 | ID=MS.gene037224.t1.exon2;Parent=MS.gene037224.t1 |
| chr7.3 | CDS | 62579204 | 62579671 | 62579204 | ID=cds.MS.gene037224.t1;Parent=MS.gene037224.t1 |
| Gene Sequence |
| Protein sequence |
