Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037236.t1 | XP_024632961.1 | 80.5 | 800 | 113 | 6 | 345 | 1101 | 1 | 800 | 0.00E+00 | 1254.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037236.t1 | Q9SWG3 | 23.7 | 718 | 438 | 17 | 376 | 1070 | 48 | 678 | 1.0e-42 | 177.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037236.t1 | D3YBB9 | 71.5 | 793 | 180 | 7 | 331 | 1093 | 36 | 812 | 0.0e+00 | 1094.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene037236.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037236.t1 | MTR_0558s0020 | 80.678 | 295 | 36 | 2 | 345 | 618 | 1 | 295 | 8.91e-163 | 483 |
MS.gene037236.t1 | MTR_1g083640 | 75.352 | 284 | 34 | 2 | 345 | 592 | 1 | 284 | 1.42e-142 | 431 |
MS.gene037236.t1 | MTR_8g446020 | 67.687 | 294 | 36 | 2 | 345 | 618 | 1 | 255 | 4.65e-126 | 386 |
MS.gene037236.t1 | MTR_2g014100 | 73.469 | 245 | 36 | 2 | 345 | 560 | 1 | 245 | 8.85e-115 | 356 |
MS.gene037236.t1 | MTR_6g090505 | 75.325 | 231 | 37 | 1 | 409 | 619 | 1 | 231 | 1.06e-113 | 357 |
MS.gene037236.t1 | MTR_6g090505 | 79.592 | 49 | 10 | 0 | 896 | 944 | 314 | 362 | 7.42e-12 | 68.9 |
MS.gene037236.t1 | MTR_3g008240 | 83.505 | 194 | 31 | 1 | 345 | 537 | 1 | 194 | 8.38e-107 | 333 |
MS.gene037236.t1 | MTR_0337s0060 | 58.228 | 316 | 32 | 4 | 776 | 1088 | 21 | 239 | 4.97e-105 | 330 |
MS.gene037236.t1 | MTR_4g040430 | 81.347 | 193 | 32 | 1 | 345 | 537 | 1 | 189 | 4.15e-102 | 320 |
MS.gene037236.t1 | MTR_0337s0040 | 64.368 | 261 | 33 | 3 | 345 | 584 | 1 | 222 | 1.65e-98 | 311 |
MS.gene037236.t1 | MTR_5g071590 | 72.376 | 181 | 37 | 2 | 345 | 512 | 1 | 181 | 5.55e-84 | 271 |
MS.gene037236.t1 | MTR_3g028680 | 81.013 | 158 | 27 | 1 | 947 | 1101 | 1 | 158 | 7.96e-82 | 265 |
MS.gene037236.t1 | MTR_3g045230 | 79.268 | 164 | 32 | 2 | 3 | 165 | 2 | 164 | 2.73e-78 | 261 |
MS.gene037236.t1 | MTR_3g043900 | 77.439 | 164 | 34 | 3 | 3 | 165 | 2 | 163 | 6.38e-75 | 252 |
MS.gene037236.t1 | MTR_2g067090 | 78.065 | 155 | 31 | 1 | 950 | 1101 | 99 | 253 | 7.95e-74 | 247 |
MS.gene037236.t1 | MTR_7g102720 | 75.758 | 165 | 20 | 2 | 1 | 165 | 1 | 145 | 3.00e-73 | 247 |
MS.gene037236.t1 | MTR_4g133495 | 62.766 | 188 | 43 | 3 | 905 | 1089 | 88 | 251 | 9.84e-67 | 226 |
MS.gene037236.t1 | MTR_4g133340 | 62.766 | 188 | 43 | 3 | 905 | 1089 | 88 | 251 | 9.84e-67 | 226 |
MS.gene037236.t1 | MTR_1g055240 | 73.239 | 142 | 18 | 1 | 435 | 556 | 3 | 144 | 3.55e-63 | 211 |
MS.gene037236.t1 | MTR_0019s0290 | 69.079 | 152 | 27 | 1 | 426 | 557 | 9 | 160 | 1.36e-62 | 210 |
MS.gene037236.t1 | MTR_1281s0010 | 78.899 | 109 | 23 | 0 | 363 | 471 | 1 | 109 | 5.11e-53 | 181 |
MS.gene037236.t1 | MTR_7g037530 | 63.433 | 134 | 32 | 4 | 1 | 134 | 1 | 117 | 5.19e-46 | 161 |
MS.gene037236.t1 | MTR_4g008820 | 84.884 | 86 | 12 | 1 | 339 | 423 | 119 | 204 | 6.64e-35 | 143 |
MS.gene037236.t1 | MTR_8g046060 | 77.273 | 88 | 11 | 2 | 345 | 423 | 91 | 178 | 2.26e-30 | 120 |
MS.gene037236.t1 | MTR_2g068850 | 38.389 | 211 | 119 | 6 | 1 | 205 | 4 | 209 | 3.81e-30 | 119 |
MS.gene037236.t1 | MTR_2g068840 | 40.828 | 169 | 91 | 4 | 1 | 165 | 4 | 167 | 2.00e-28 | 119 |
MS.gene037236.t1 | MTR_6g051425 | 29.167 | 336 | 174 | 13 | 384 | 680 | 22 | 332 | 1.09e-27 | 115 |
MS.gene037236.t1 | MTR_2g068800 | 38.554 | 166 | 76 | 4 | 3 | 165 | 6 | 148 | 9.58e-26 | 108 |
MS.gene037236.t1 | MTR_2g067130 | 61.728 | 81 | 25 | 2 | 1024 | 1101 | 46 | 123 | 3.71e-22 | 94.7 |
MS.gene037236.t1 | MTR_3g092890 | 33.133 | 166 | 92 | 4 | 30 | 191 | 15 | 165 | 6.41e-16 | 80.9 |
MS.gene037236.t1 | MTR_0337s0050 | 76.316 | 38 | 9 | 0 | 583 | 620 | 14 | 51 | 5.91e-15 | 71.2 |
MS.gene037236.t1 | MTR_2g069300 | 37.121 | 132 | 75 | 4 | 18 | 144 | 18 | 146 | 1.05e-13 | 74.3 |
MS.gene037236.t1 | MTR_0032s0040 | 32.704 | 159 | 93 | 5 | 18 | 165 | 27 | 182 | 2.19e-13 | 73.6 |
MS.gene037236.t1 | MTR_5g059130 | 35.088 | 114 | 71 | 3 | 50 | 161 | 38 | 150 | 5.82e-13 | 72.0 |
MS.gene037236.t1 | MTR_7g102820 | 33.974 | 156 | 85 | 6 | 18 | 161 | 25 | 174 | 1.44e-12 | 71.2 |
MS.gene037236.t1 | MTR_1g070135 | 37.500 | 144 | 74 | 8 | 26 | 161 | 11 | 146 | 1.49e-12 | 70.1 |
MS.gene037236.t1 | MTR_1g070135 | 37.500 | 144 | 74 | 8 | 26 | 161 | 11 | 146 | 1.62e-12 | 70.9 |
MS.gene037236.t1 | MTR_7g062550 | 28.571 | 175 | 117 | 7 | 19 | 190 | 25 | 194 | 3.05e-12 | 70.1 |
MS.gene037236.t1 | MTR_1g062110 | 33.766 | 154 | 86 | 5 | 18 | 161 | 26 | 173 | 3.30e-12 | 70.1 |
MS.gene037236.t1 | MTR_8g041620 | 31.928 | 166 | 99 | 5 | 9 | 165 | 23 | 183 | 4.52e-12 | 69.7 |
MS.gene037236.t1 | MTR_7g062600 | 29.936 | 157 | 103 | 6 | 19 | 172 | 16 | 168 | 4.82e-12 | 69.3 |
MS.gene037236.t1 | MTR_1g062110 | 33.766 | 154 | 86 | 5 | 18 | 161 | 26 | 173 | 4.88e-12 | 68.9 |
MS.gene037236.t1 | MTR_3g091360 | 31.034 | 145 | 87 | 5 | 16 | 153 | 17 | 155 | 1.01e-11 | 68.6 |
MS.gene037236.t1 | MTR_2g068950 | 29.605 | 152 | 100 | 4 | 18 | 164 | 26 | 175 | 1.47e-11 | 68.2 |
MS.gene037236.t1 | MTR_5g055820 | 29.341 | 167 | 99 | 5 | 1 | 162 | 1 | 153 | 1.78e-11 | 67.8 |
MS.gene037236.t1 | MTR_8g041600 | 33.758 | 157 | 90 | 6 | 18 | 165 | 32 | 183 | 1.97e-11 | 67.0 |
MS.gene037236.t1 | MTR_8g041600 | 31.325 | 166 | 100 | 5 | 9 | 165 | 23 | 183 | 2.93e-11 | 67.0 |
MS.gene037236.t1 | MTR_3g072820 | 27.586 | 145 | 100 | 4 | 19 | 161 | 7 | 148 | 3.06e-11 | 66.6 |
MS.gene037236.t1 | MTR_1g070120 | 36.620 | 142 | 78 | 7 | 26 | 161 | 11 | 146 | 3.20e-11 | 66.6 |
MS.gene037236.t1 | MTR_1g070355 | 25.200 | 250 | 150 | 6 | 385 | 615 | 80 | 311 | 4.79e-11 | 67.4 |
MS.gene037236.t1 | MTR_5g048470 | 26.887 | 212 | 126 | 9 | 19 | 209 | 18 | 221 | 5.37e-11 | 66.2 |
MS.gene037236.t1 | MTR_5g048550 | 28.889 | 180 | 111 | 7 | 19 | 194 | 13 | 179 | 6.73e-11 | 65.9 |
MS.gene037236.t1 | MTR_2g069210 | 31.373 | 153 | 97 | 3 | 18 | 165 | 28 | 177 | 7.50e-11 | 65.9 |
MS.gene037236.t1 | MTR_5g048740 | 27.982 | 218 | 121 | 9 | 16 | 209 | 8 | 213 | 9.21e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037236.t1 | AT4G38180 | 26.365 | 641 | 377 | 15 | 376 | 994 | 70 | 637 | 1.80e-55 | 207 |
MS.gene037236.t1 | AT4G15090 | 25.321 | 545 | 336 | 10 | 529 | 1070 | 202 | 678 | 5.88e-48 | 185 |
MS.gene037236.t1 | AT4G15090 | 25.321 | 545 | 336 | 10 | 529 | 1070 | 202 | 678 | 5.88e-48 | 185 |
MS.gene037236.t1 | AT4G15090 | 25.321 | 545 | 336 | 10 | 529 | 1070 | 202 | 678 | 5.88e-48 | 185 |
MS.gene037236.t1 | AT4G15090 | 25.321 | 545 | 336 | 10 | 529 | 1070 | 202 | 678 | 5.88e-48 | 185 |
MS.gene037236.t1 | AT4G15090 | 25.321 | 545 | 336 | 10 | 529 | 1070 | 202 | 678 | 5.88e-48 | 185 |
MS.gene037236.t1 | AT2G27110 | 25.381 | 591 | 364 | 15 | 471 | 1048 | 108 | 634 | 2.42e-47 | 184 |
MS.gene037236.t1 | AT2G27110 | 25.381 | 591 | 364 | 15 | 471 | 1048 | 108 | 634 | 2.42e-47 | 184 |
MS.gene037236.t1 | AT2G27110 | 26.511 | 513 | 315 | 12 | 538 | 1048 | 37 | 489 | 3.74e-47 | 181 |
MS.gene037236.t1 | AT3G22170 | 21.810 | 674 | 430 | 17 | 378 | 1037 | 69 | 659 | 4.37e-41 | 164 |
MS.gene037236.t1 | AT3G22170 | 21.810 | 674 | 430 | 17 | 378 | 1037 | 69 | 659 | 4.37e-41 | 164 |
MS.gene037236.t1 | AT1G76320 | 23.145 | 674 | 411 | 19 | 394 | 1048 | 12 | 597 | 1.43e-39 | 157 |
MS.gene037236.t1 | AT3G06250 | 23.825 | 617 | 364 | 16 | 378 | 990 | 189 | 703 | 1.84e-39 | 158 |
MS.gene037236.t1 | AT3G06250 | 23.825 | 617 | 364 | 16 | 378 | 990 | 189 | 703 | 1.84e-39 | 158 |
MS.gene037236.t1 | AT3G06250 | 23.825 | 617 | 364 | 16 | 378 | 990 | 189 | 703 | 1.84e-39 | 158 |
MS.gene037236.t1 | AT1G76320 | 22.920 | 685 | 421 | 19 | 383 | 1048 | 1 | 597 | 3.35e-39 | 157 |
MS.gene037236.t1 | AT1G76320 | 22.920 | 685 | 421 | 19 | 383 | 1048 | 1 | 597 | 4.10e-39 | 157 |
MS.gene037236.t1 | AT1G76320 | 22.920 | 685 | 421 | 19 | 383 | 1048 | 1 | 597 | 4.10e-39 | 157 |
MS.gene037236.t1 | AT3G13610 | 40.594 | 202 | 116 | 3 | 3 | 203 | 11 | 209 | 1.01e-38 | 149 |
MS.gene037236.t1 | AT1G55290 | 43.713 | 167 | 91 | 3 | 4 | 169 | 11 | 175 | 3.45e-36 | 141 |
MS.gene037236.t1 | AT4G38170 | 23.156 | 488 | 298 | 14 | 559 | 1032 | 24 | 448 | 4.24e-36 | 145 |
MS.gene037236.t1 | AT5G18960 | 22.749 | 633 | 374 | 17 | 368 | 990 | 200 | 727 | 2.90e-33 | 139 |
MS.gene037236.t1 | AT5G18960 | 22.749 | 633 | 374 | 17 | 368 | 990 | 200 | 727 | 2.90e-33 | 139 |
MS.gene037236.t1 | AT2G32250 | 23.109 | 714 | 424 | 22 | 366 | 1072 | 27 | 622 | 3.69e-33 | 138 |
MS.gene037236.t1 | AT2G32250 | 23.109 | 714 | 424 | 22 | 366 | 1072 | 27 | 622 | 4.37e-33 | 138 |
MS.gene037236.t1 | AT2G32250 | 23.109 | 714 | 424 | 22 | 366 | 1072 | 27 | 622 | 4.37e-33 | 138 |
MS.gene037236.t1 | AT2G32250 | 23.109 | 714 | 424 | 22 | 366 | 1072 | 27 | 622 | 4.37e-33 | 138 |
MS.gene037236.t1 | AT2G32250 | 23.109 | 714 | 424 | 22 | 366 | 1072 | 27 | 622 | 4.94e-33 | 138 |
MS.gene037236.t1 | AT2G32250 | 23.109 | 714 | 424 | 22 | 366 | 1072 | 27 | 622 | 4.94e-33 | 138 |
MS.gene037236.t1 | AT2G32250 | 23.055 | 694 | 413 | 20 | 385 | 1072 | 3 | 581 | 1.12e-32 | 137 |
MS.gene037236.t1 | AT2G32250 | 23.055 | 694 | 413 | 20 | 385 | 1072 | 3 | 581 | 1.46e-32 | 136 |
MS.gene037236.t1 | AT1G80010 | 24.000 | 650 | 368 | 22 | 382 | 991 | 98 | 661 | 1.94e-31 | 133 |
MS.gene037236.t1 | AT5G28530 | 23.648 | 647 | 366 | 21 | 384 | 989 | 60 | 619 | 2.04e-31 | 132 |
MS.gene037236.t1 | AT1G10240 | 23.101 | 632 | 361 | 20 | 393 | 988 | 62 | 604 | 3.23e-31 | 132 |
MS.gene037236.t1 | AT1G10240 | 23.101 | 632 | 361 | 20 | 393 | 988 | 62 | 604 | 3.23e-31 | 132 |
MS.gene037236.t1 | AT5G28530 | 23.493 | 647 | 363 | 22 | 384 | 989 | 60 | 615 | 1.65e-30 | 129 |
MS.gene037236.t1 | AT5G28530 | 23.493 | 647 | 363 | 22 | 384 | 989 | 60 | 615 | 1.65e-30 | 129 |
MS.gene037236.t1 | AT5G12270 | 42.262 | 168 | 90 | 5 | 1 | 165 | 3 | 166 | 3.36e-27 | 115 |
MS.gene037236.t1 | AT3G12900 | 33.880 | 183 | 119 | 2 | 6 | 187 | 9 | 190 | 4.58e-27 | 114 |
MS.gene037236.t1 | AT1G52520 | 22.029 | 631 | 391 | 20 | 382 | 991 | 88 | 638 | 5.65e-27 | 118 |
MS.gene037236.t1 | AT4G19990 | 24.550 | 444 | 275 | 14 | 385 | 812 | 27 | 426 | 2.16e-24 | 110 |
MS.gene037236.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 920 | 1050 | 495 | 615 | 4.73e-12 | 70.9 |
MS.gene037236.t1 | AT4G19990 | 24.550 | 444 | 275 | 14 | 385 | 812 | 41 | 440 | 2.36e-24 | 110 |
MS.gene037236.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 920 | 1050 | 509 | 629 | 4.87e-12 | 70.9 |
MS.gene037236.t1 | AT4G19990 | 24.550 | 444 | 275 | 14 | 385 | 812 | 27 | 426 | 2.36e-24 | 110 |
MS.gene037236.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 920 | 1050 | 495 | 615 | 4.73e-12 | 70.9 |
MS.gene037236.t1 | AT4G19990 | 24.550 | 444 | 275 | 14 | 385 | 812 | 27 | 426 | 2.36e-24 | 110 |
MS.gene037236.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 920 | 1050 | 495 | 615 | 4.73e-12 | 70.9 |
MS.gene037236.t1 | AT4G19990 | 24.550 | 444 | 275 | 14 | 385 | 812 | 27 | 426 | 4.50e-24 | 109 |
MS.gene037236.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 920 | 1050 | 495 | 615 | 4.86e-12 | 70.9 |
MS.gene037236.t1 | AT4G19990 | 24.550 | 444 | 275 | 14 | 385 | 812 | 27 | 426 | 4.50e-24 | 109 |
MS.gene037236.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 920 | 1050 | 495 | 615 | 4.86e-12 | 70.9 |
MS.gene037236.t1 | AT4G19990 | 27.636 | 275 | 181 | 6 | 544 | 812 | 107 | 369 | 4.54e-23 | 106 |
MS.gene037236.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 920 | 1050 | 438 | 558 | 4.15e-12 | 70.9 |
MS.gene037236.t1 | AT5G08640 | 32.456 | 114 | 66 | 3 | 55 | 167 | 42 | 145 | 1.98e-12 | 70.5 |
MS.gene037236.t1 | AT5G08640 | 32.456 | 114 | 66 | 3 | 55 | 167 | 42 | 145 | 1.98e-12 | 70.5 |
MS.gene037236.t1 | AT5G63580 | 33.333 | 111 | 61 | 4 | 55 | 164 | 18 | 116 | 2.83e-12 | 68.6 |
MS.gene037236.t1 | AT5G63580 | 33.333 | 111 | 61 | 4 | 55 | 164 | 18 | 116 | 3.19e-12 | 68.6 |
MS.gene037236.t1 | AT5G63590 | 33.929 | 112 | 71 | 3 | 52 | 161 | 10 | 120 | 5.49e-12 | 68.6 |
MS.gene037236.t1 | AT5G43935 | 33.929 | 112 | 62 | 3 | 56 | 167 | 19 | 118 | 3.31e-11 | 66.2 |
MS.gene037236.t1 | AT5G24530 | 31.884 | 138 | 80 | 4 | 29 | 161 | 14 | 142 | 4.44e-11 | 66.2 |
MS.gene037236.t1 | AT3G19010 | 38.261 | 115 | 61 | 5 | 34 | 144 | 8 | 116 | 9.40e-11 | 65.1 |
Find 185 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 7.3:+62389329 | MS.gene037236:CDS |
CTTTAGTCATTTCAAAATTA+TGG | 0.169397 | 7.3:+62389596 | MS.gene037236:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 7.3:-62390464 | None:intergenic |
TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 7.3:+62389047 | MS.gene037236:intron |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 7.3:+62388534 | MS.gene037236:CDS |
TTTAGTTGCAGCACTGAAAA+TGG | 0.235377 | 7.3:-62383843 | None:intergenic |
CTTCAACAGGTTGAATATAT+TGG | 0.248516 | 7.3:-62383724 | None:intergenic |
GTATCCCATGATTCACAATT+TGG | 0.255738 | 7.3:-62383877 | None:intergenic |
TATTGATATCTTTGAGTCTT+GGG | 0.267909 | 7.3:-62383774 | None:intergenic |
TATGGTTTGAGGTTTATTAT+TGG | 0.269219 | 7.3:-62389175 | None:intergenic |
AACCAAGCCAATGGTGTAAA+AGG | 0.296157 | 7.3:+62383668 | MS.gene037236:CDS |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 7.3:-62390458 | None:intergenic |
AAATGGAATCTTGAACTTCT+AGG | 0.307038 | 7.3:-62383826 | None:intergenic |
AATCAGATTTCTACTACAAT+TGG | 0.316057 | 7.3:+62389370 | MS.gene037236:CDS |
GTGAGAAAAGCGATCTTGTT+AGG | 0.317886 | 7.3:-62386745 | None:intergenic |
TGGTCTTTGCTCATGGCATA+TGG | 0.321670 | 7.3:+62389260 | MS.gene037236:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.324740 | 7.3:+62390310 | MS.gene037236:CDS |
GAGGGATAATCATGTTGATT+TGG | 0.335640 | 7.3:+62389629 | MS.gene037236:CDS |
CTTTCATGCTGAGTCTGTAT+TGG | 0.345811 | 7.3:+62384027 | MS.gene037236:CDS |
TGGTTTAGAATTGAAGGTTC+TGG | 0.348323 | 7.3:+62388676 | MS.gene037236:intron |
GTATTGATATCTTTGAGTCT+TGG | 0.352887 | 7.3:-62383775 | None:intergenic |
TTCTTCCAAATTGTGAATCA+TGG | 0.353953 | 7.3:+62383872 | MS.gene037236:CDS |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 7.3:+62389893 | MS.gene037236:CDS |
CCATCATTGATTTCACAAAC+TGG | 0.356412 | 7.3:+62383798 | MS.gene037236:CDS |
GCCGATATTGATTGTTTGTT+CGG | 0.357702 | 7.3:-62388584 | None:intergenic |
CTCAATGGTGTTCTTGAGGC+AGG | 0.359373 | 7.3:+62390302 | MS.gene037236:CDS |
TCATGTTGATTTGGACTTCA+AGG | 0.359475 | 7.3:+62389638 | MS.gene037236:CDS |
AATGATTTCTTCTCCTCAAC+TGG | 0.366777 | 7.3:-62383956 | None:intergenic |
GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 7.3:-62390186 | None:intergenic |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 7.3:+62389470 | MS.gene037236:CDS |
ATCGTAAAGAGTGTGTTATT+TGG | 0.370850 | 7.3:+62389081 | MS.gene037236:CDS |
TTAGAACACGTGTGCAATAT+CGG | 0.378378 | 7.3:-62386691 | None:intergenic |
TTTCAGTGCTGCAACTAAAT+GGG | 0.378697 | 7.3:+62383847 | MS.gene037236:CDS |
AGCAGCCTGGTCTGTGTATA+TGG | 0.381061 | 7.3:-62389193 | None:intergenic |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 7.3:+62389469 | MS.gene037236:CDS |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 7.3:-62388054 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 7.3:+62390450 | MS.gene037236:CDS |
AGGATAAAATTCATGCATAT+TGG | 0.397936 | 7.3:+62384086 | MS.gene037236:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 7.3:-62390440 | None:intergenic |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 7.3:+62390335 | MS.gene037236:CDS |
TTGTCTATTCTAGCTTCAAC+AGG | 0.406074 | 7.3:-62383737 | None:intergenic |
CCATGATTCTTTATCACTAA+AGG | 0.406174 | 7.3:-62387815 | None:intergenic |
TTCCTTCAAATATTATTATG+AGG | 0.407126 | 7.3:+62389770 | MS.gene037236:CDS |
ATAACACTAGATTCTCTGTT+AGG | 0.407308 | 7.3:+62387896 | MS.gene037236:CDS |
TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 7.3:+62387825 | MS.gene037236:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 7.3:+62390018 | MS.gene037236:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 7.3:-62389941 | None:intergenic |
TTTCTCACCGTTTCCGTCGC+CGG | 0.417936 | 7.3:+62386760 | MS.gene037236:CDS |
GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 7.3:+62389976 | MS.gene037236:CDS |
TTTCTGAATCGCACGAATCA+AGG | 0.425398 | 7.3:-62386891 | None:intergenic |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 7.3:-62389942 | None:intergenic |
TATATTTCTTACTTGCATAC+AGG | 0.427628 | 7.3:-62384112 | None:intergenic |
AACAATCAATATCGGCCATT+AGG | 0.428800 | 7.3:+62388591 | MS.gene037236:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 7.3:+62388113 | MS.gene037236:CDS |
CAAGAAGTAAATGAAGTTCA+AGG | 0.439524 | 7.3:+62388231 | MS.gene037236:CDS |
ACCGAACAAACAATCAATAT+CGG | 0.440661 | 7.3:+62388583 | MS.gene037236:CDS |
CAAGGACAGGTGTTATAATC+TGG | 0.441435 | 7.3:+62386640 | MS.gene037236:intron |
TGAATGTCTATAAGATATAT+AGG | 0.445219 | 7.3:+62388145 | MS.gene037236:CDS |
CTGGTAATTCAAAGAACCTA+TGG | 0.446005 | 7.3:-62383937 | None:intergenic |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 7.3:-62389186 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7.3:+62388096 | MS.gene037236:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 7.3:-62390119 | None:intergenic |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 7.3:+62388261 | MS.gene037236:CDS |
CCAGTTTGTGAAATCAATGA+TGG | 0.453491 | 7.3:-62383798 | None:intergenic |
ATGTTCTGGTTTAGAATTGA+AGG | 0.453944 | 7.3:+62388670 | MS.gene037236:intron |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 7.3:+62389424 | MS.gene037236:CDS |
CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 7.3:-62388201 | None:intergenic |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 7.3:+62390019 | MS.gene037236:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 7.3:+62387945 | MS.gene037236:CDS |
TGAGAAAAGCGATCTTGTTA+GGG | 0.471595 | 7.3:-62386744 | None:intergenic |
ATCCGAGAGTGGACAATTGA+CGG | 0.474201 | 7.3:+62387750 | MS.gene037236:CDS |
CTCCTCATAATAATATTTGA+AGG | 0.474618 | 7.3:-62389772 | None:intergenic |
GAGAAACACGTCGGAGAGAA+AGG | 0.474937 | 7.3:-62387027 | None:intergenic |
ATCATCAAGAACATTAATAT+AGG | 0.475030 | 7.3:-62383899 | None:intergenic |
ATCAGATTTCTACTACAATT+GGG | 0.478815 | 7.3:+62389371 | MS.gene037236:CDS |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 7.3:-62388090 | None:intergenic |
TGTCTTCTGCATCATCAACT+TGG | 0.487542 | 7.3:-62388479 | None:intergenic |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 7.3:+62388374 | MS.gene037236:CDS |
CATAATAATATTTGAAGGAA+AGG | 0.489943 | 7.3:-62389767 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 7.3:+62387939 | MS.gene037236:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 7.3:+62389786 | MS.gene037236:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 7.3:-62389060 | None:intergenic |
TCTTCCAAATTGTGAATCAT+GGG | 0.492010 | 7.3:+62383873 | MS.gene037236:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 7.3:+62388387 | MS.gene037236:CDS |
CTATCTGTGAACCATCTGTT+GGG | 0.492981 | 7.3:+62390411 | MS.gene037236:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 7.3:-62389690 | None:intergenic |
ATTGATATCTTTGAGTCTTG+GGG | 0.499948 | 7.3:-62383773 | None:intergenic |
AAATTATGGTTCAGAGAATG+AGG | 0.506271 | 7.3:+62389610 | MS.gene037236:CDS |
AACCGTCAATTGTCCACTCT+CGG | 0.506734 | 7.3:-62387752 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 7.3:+62389457 | MS.gene037236:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 7.3:+62389955 | MS.gene037236:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 7.3:+62389475 | MS.gene037236:CDS |
TTCACTCCGACGTATTTCTC+CGG | 0.511859 | 7.3:+62387067 | MS.gene037236:CDS |
AACGGTGAGAATCGAGGTGC+CGG | 0.515310 | 7.3:-62386948 | None:intergenic |
TGGTGTATATTTGTTTACTA+CGG | 0.517666 | 7.3:-62389712 | None:intergenic |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 7.3:-62389935 | None:intergenic |
ATATATTGGTGAGGAACACT+AGG | 0.519275 | 7.3:-62383710 | None:intergenic |
GGTCTTTGCTCATGGCATAT+GGG | 0.519436 | 7.3:+62389261 | MS.gene037236:CDS |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 7.3:-62389578 | None:intergenic |
TGTCTATAAGATATATAGGT+GGG | 0.523740 | 7.3:+62388149 | MS.gene037236:CDS |
CACGTCGGAACGGCAAGAAA+CGG | 0.524911 | 7.3:-62386808 | None:intergenic |
CACGTCGGAGAAGCGAAGAA+AGG | 0.526794 | 7.3:-62386997 | None:intergenic |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 7.3:+62389956 | MS.gene037236:CDS |
AACGGCGCCGGCGACGGAAA+CGG | 0.529157 | 7.3:-62386767 | None:intergenic |
GGTGAATCACGTCGGAGAGA+AGG | 0.529438 | 7.3:-62386869 | None:intergenic |
CAAGTTGCAGCAGCGAGAAA+CGG | 0.533204 | 7.3:-62386966 | None:intergenic |
CTGAAATCTACCATGAATGT+TGG | 0.534154 | 7.3:+62390176 | MS.gene037236:CDS |
GTGAATCACGTCGGAGAGAA+GGG | 0.536667 | 7.3:-62386868 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 7.3:+62387990 | MS.gene037236:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 7.3:-62389573 | None:intergenic |
TGTTATGCTTGTAACAAAGA+AGG | 0.541604 | 7.3:+62387979 | MS.gene037236:CDS |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 7.3:+62389787 | MS.gene037236:CDS |
CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 7.3:+62387815 | MS.gene037236:CDS |
GCTAAATGCTACAAAACTGA+TGG | 0.543608 | 7.3:+62387147 | MS.gene037236:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 7.3:+62387991 | MS.gene037236:CDS |
ATCAATGAGACTTGTGGCAG+TGG | 0.546685 | 7.3:-62383636 | None:intergenic |
CATCATTGATTTCACAAACT+GGG | 0.550701 | 7.3:+62383799 | MS.gene037236:CDS |
TCGTGATCGTGAAACGGCGC+CGG | 0.552401 | 7.3:-62386779 | None:intergenic |
AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 7.3:-62388189 | None:intergenic |
GAGTGAATAACGTCGGAGGA+AGG | 0.554821 | 7.3:-62387051 | None:intergenic |
TTCAGTGCTGCAACTAAATG+GGG | 0.557045 | 7.3:+62383848 | MS.gene037236:CDS |
TCGTGAAACGGCGCCGGCGA+CGG | 0.557170 | 7.3:-62386773 | None:intergenic |
TCTCAAAAGCTTCTGTCCAT+AGG | 0.560358 | 7.3:+62383921 | MS.gene037236:CDS |
TAACGTCGGAGAAGCGAGCA+AGG | 0.562201 | 7.3:-62386839 | None:intergenic |
TTCTGAATCGCACGAATCAA+GGG | 0.562816 | 7.3:-62386890 | None:intergenic |
GCTATCTGTGAACCATCTGT+TGG | 0.564131 | 7.3:+62390410 | MS.gene037236:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 7.3:+62388441 | MS.gene037236:CDS |
TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 7.3:+62387774 | MS.gene037236:CDS |
ACTTCAACAACGCAGCAGCC+TGG | 0.565917 | 7.3:-62389206 | None:intergenic |
GCATCTGAAATATTTCTCAA+TGG | 0.566996 | 7.3:+62390287 | MS.gene037236:CDS |
TGAGAATCGTGATCGTGAAA+CGG | 0.569595 | 7.3:-62386785 | None:intergenic |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 7.3:+62390262 | MS.gene037236:CDS |
ATTTCTCAATGGTGTTCTTG+AGG | 0.572762 | 7.3:+62390298 | MS.gene037236:CDS |
GTTCTTTGAATTACCAGTTG+AGG | 0.574908 | 7.3:+62383943 | MS.gene037236:CDS |
TCAATGGTGTTCTTGAGGCA+GGG | 0.576112 | 7.3:+62390303 | MS.gene037236:CDS |
GCATCTTGTGTATACTTCAG+AGG | 0.578405 | 7.3:+62384066 | MS.gene037236:CDS |
CTTCAAATATTATTATGAGG+AGG | 0.578760 | 7.3:+62389773 | MS.gene037236:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 7.3:-62389691 | None:intergenic |
GGCTGAGAATCACGTCGGAA+CGG | 0.580107 | 7.3:-62386818 | None:intergenic |
TTGAAGAAAACCTTTCCCCA+AGG | 0.580876 | 7.3:+62389925 | MS.gene037236:CDS |
ACCACATGATGTTGTGAGGT+TGG | 0.581538 | 7.3:+62383991 | MS.gene037236:CDS |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 7.3:-62390422 | None:intergenic |
ATTTCTTACTTGCATACAGG+AGG | 0.589656 | 7.3:-62384109 | None:intergenic |
GAATGAATTCAAGGAATGAG+TGG | 0.593229 | 7.3:-62391005 | None:intergenic |
CATATAAATGAATAACTCGC+CGG | 0.596217 | 7.3:-62387086 | None:intergenic |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 7.3:-62390378 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 7.3:+62388380 | MS.gene037236:CDS |
TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 7.3:-62390210 | None:intergenic |
CAGTTTGTGAAATCAATGAT+GGG | 0.602140 | 7.3:-62383797 | None:intergenic |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 7.3:+62388383 | MS.gene037236:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 7.3:+62390265 | MS.gene037236:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 7.3:+62389688 | MS.gene037236:CDS |
ATATCAACTTCATCCGAGAG+TGG | 0.612216 | 7.3:+62387739 | MS.gene037236:CDS |
TTGATATCTTTGAGTCTTGG+GGG | 0.617935 | 7.3:-62383772 | None:intergenic |
AATGAGACTTGTGGCAGTGG+TGG | 0.620355 | 7.3:-62383633 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 7.3:-62388039 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 7.3:-62389426 | None:intergenic |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 7.3:-62389940 | None:intergenic |
GCGATTCAGAAATTCATCGC+CGG | 0.632392 | 7.3:+62386929 | MS.gene037236:CDS |
ATGCTGAGTCTGTATTGGAG+TGG | 0.632960 | 7.3:+62384032 | MS.gene037236:CDS |
ACAGGTTGAATATATTGGTG+AGG | 0.638111 | 7.3:-62383719 | None:intergenic |
TGAGTCTGTATTGGAGTGGA+AGG | 0.642659 | 7.3:+62384036 | MS.gene037236:CDS |
ATGTCTATAAGATATATAGG+TGG | 0.643489 | 7.3:+62388148 | MS.gene037236:CDS |
GCCAACCTCACAACATCATG+TGG | 0.644211 | 7.3:-62383992 | None:intergenic |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 7.3:-62390161 | None:intergenic |
AATTATGGTTCAGAGAATGA+GGG | 0.653552 | 7.3:+62389611 | MS.gene037236:CDS |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 7.3:-62389732 | None:intergenic |
TATATTGGTGAGGAACACTA+GGG | 0.655772 | 7.3:-62383709 | None:intergenic |
AACACGTGTGCAATATCGGA+CGG | 0.662967 | 7.3:-62386687 | None:intergenic |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 7.3:-62390037 | None:intergenic |
GCGAGAAACGGTGAGAATCG+AGG | 0.668358 | 7.3:-62386954 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 7.3:+62389188 | MS.gene037236:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 7.3:+62390020 | MS.gene037236:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 7.3:+62389871 | MS.gene037236:CDS |
ATTCACCACATGATGTTGTG+AGG | 0.688810 | 7.3:+62383987 | MS.gene037236:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 7.3:+62389872 | MS.gene037236:CDS |
AACTCGCCGGAGAAATACGT+CGG | 0.699174 | 7.3:-62387073 | None:intergenic |
GTCGGAGTGAATAACGTCGG+AGG | 0.706140 | 7.3:-62387055 | None:intergenic |
GAGAAGGGTGAAAATAACGT+CGG | 0.709240 | 7.3:-62386853 | None:intergenic |
TACGTCGGAGTGAATAACGT+CGG | 0.712291 | 7.3:-62387058 | None:intergenic |
GAATCAAGGGTGAATCACGT+CGG | 0.714908 | 7.3:-62386877 | None:intergenic |
GAGAAAGGTGAGAATCACGT+CGG | 0.723440 | 7.3:-62387012 | None:intergenic |
AGCAAGGCTGAGAATCACGT+CGG | 0.725394 | 7.3:-62386823 | None:intergenic |
GTCAATTCTGATGTAATGCG+CGG | 0.734639 | 7.3:+62390951 | MS.gene037236:CDS |
GAGGAAGGTGAGAAACACGT+CGG | 0.738329 | 7.3:-62387036 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 62383629 | 62391019 | 62383629 | ID=MS.gene037236 |
chr7.3 | mRNA | 62383629 | 62391019 | 62383629 | ID=MS.gene037236.t1;Parent=MS.gene037236 |
chr7.3 | exon | 62383629 | 62384122 | 62383629 | ID=MS.gene037236.t1.exon1;Parent=MS.gene037236.t1 |
chr7.3 | CDS | 62383629 | 62384122 | 62383629 | ID=cds.MS.gene037236.t1;Parent=MS.gene037236.t1 |
chr7.3 | exon | 62386649 | 62387168 | 62386649 | ID=MS.gene037236.t1.exon2;Parent=MS.gene037236.t1 |
chr7.3 | CDS | 62386649 | 62387168 | 62386649 | ID=cds.MS.gene037236.t1;Parent=MS.gene037236.t1 |
chr7.3 | exon | 62387712 | 62388308 | 62387712 | ID=MS.gene037236.t1.exon3;Parent=MS.gene037236.t1 |
chr7.3 | CDS | 62387712 | 62388308 | 62387712 | ID=cds.MS.gene037236.t1;Parent=MS.gene037236.t1 |
chr7.3 | exon | 62388369 | 62388612 | 62388369 | ID=MS.gene037236.t1.exon4;Parent=MS.gene037236.t1 |
chr7.3 | CDS | 62388369 | 62388612 | 62388369 | ID=cds.MS.gene037236.t1;Parent=MS.gene037236.t1 |
chr7.3 | exon | 62388684 | 62388697 | 62388684 | ID=MS.gene037236.t1.exon5;Parent=MS.gene037236.t1 |
chr7.3 | CDS | 62388684 | 62388697 | 62388684 | ID=cds.MS.gene037236.t1;Parent=MS.gene037236.t1 |
chr7.3 | exon | 62389057 | 62390491 | 62389057 | ID=MS.gene037236.t1.exon6;Parent=MS.gene037236.t1 |
chr7.3 | CDS | 62389057 | 62390491 | 62389057 | ID=cds.MS.gene037236.t1;Parent=MS.gene037236.t1 |
chr7.3 | exon | 62390943 | 62391019 | 62390943 | ID=MS.gene037236.t1.exon7;Parent=MS.gene037236.t1 |
chr7.3 | CDS | 62390943 | 62391019 | 62390943 | ID=cds.MS.gene037236.t1;Parent=MS.gene037236.t1 |
Gene Sequence |
Protein sequence |