Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037246.t1 | XP_024627301.1 | 88.4 | 190 | 20 | 1 | 1 | 188 | 1 | 190 | 3.80E-82 | 314.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037246.t1 | Q6IP65 | 62.8 | 156 | 56 | 2 | 33 | 188 | 28 | 181 | 1.9e-45 | 183.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037246.t1 | A0A396GV60 | 88.4 | 190 | 20 | 1 | 1 | 188 | 1 | 190 | 2.8e-82 | 314.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037246.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037246.t1 | MTR_5g093460 | 70.811 | 185 | 51 | 1 | 5 | 189 | 144 | 325 | 5.69e-82 | 249 |
| MS.gene037246.t1 | MTR_5g093460 | 87.218 | 133 | 14 | 1 | 24 | 156 | 1 | 130 | 1.02e-75 | 233 |
| MS.gene037246.t1 | MTR_3g018640 | 66.845 | 187 | 60 | 1 | 3 | 189 | 13 | 197 | 4.88e-81 | 243 |
| MS.gene037246.t1 | MTR_6g065170 | 67.725 | 189 | 59 | 1 | 1 | 189 | 11 | 197 | 5.11e-79 | 238 |
| MS.gene037246.t1 | MTR_1g056470 | 66.477 | 176 | 57 | 1 | 14 | 189 | 20 | 193 | 6.69e-78 | 233 |
| MS.gene037246.t1 | MTR_8g106940 | 64.550 | 189 | 65 | 1 | 1 | 189 | 11 | 197 | 2.61e-76 | 231 |
| MS.gene037246.t1 | MTR_3g053170 | 67.901 | 162 | 50 | 1 | 28 | 189 | 26 | 185 | 7.74e-70 | 214 |
| MS.gene037246.t1 | MTR_1g043540 | 75.000 | 56 | 14 | 0 | 131 | 186 | 6 | 61 | 1.45e-20 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037246.t1 | AT3G20800 | 61.702 | 188 | 64 | 3 | 7 | 189 | 14 | 198 | 6.19e-69 | 213 |
| MS.gene037246.t1 | AT5G12980 | 59.524 | 168 | 66 | 1 | 22 | 189 | 29 | 194 | 1.09e-63 | 199 |
| MS.gene037246.t1 | AT2G32550 | 34.228 | 149 | 74 | 3 | 56 | 189 | 39 | 178 | 4.22e-18 | 80.1 |
| MS.gene037246.t1 | AT2G32550 | 34.228 | 149 | 74 | 3 | 56 | 189 | 78 | 217 | 5.84e-18 | 80.1 |
| MS.gene037246.t1 | AT2G32550 | 38.947 | 95 | 57 | 1 | 96 | 189 | 29 | 123 | 1.67e-15 | 72.4 |
Find 41 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCCAATTTGAGCATTTA+AGG | 0.127092 | 7.3:+62134643 | MS.gene037246:CDS |
| CGGAACTTGCACCTTTATTA+TGG | 0.186230 | 7.3:+62133181 | MS.gene037246:CDS |
| CAAGCCTTAAATGCTCAAAT+TGG | 0.232859 | 7.3:-62134647 | None:intergenic |
| TAAGAGGATTGGGTTATTTC+CGG | 0.242539 | 7.3:+62133161 | MS.gene037246:CDS |
| CCTTTATTATGGAATTCTTA+TGG | 0.279542 | 7.3:+62133192 | MS.gene037246:CDS |
| AAGGAAATCTATGCCTTCTT+TGG | 0.298112 | 7.3:-62135355 | None:intergenic |
| AATAGAGAAACTAACAGTTT+TGG | 0.311116 | 7.3:-62135436 | None:intergenic |
| TTTGGGCTGTGGTGCTAGAT+TGG | 0.341570 | 7.3:-62131569 | None:intergenic |
| GTTCCATGGATGCCATGCTT+TGG | 0.343484 | 7.3:-62131587 | None:intergenic |
| TTCCATGGATGCCATGCTTT+GGG | 0.345713 | 7.3:-62131586 | None:intergenic |
| CATAATAAAGGTGCAAGTTC+CGG | 0.352274 | 7.3:-62133180 | None:intergenic |
| CAATGTTCTGGAACTACTTC+AGG | 0.355418 | 7.3:+62133993 | MS.gene037246:CDS |
| CCATAAGAATTCCATAATAA+AGG | 0.371929 | 7.3:-62133192 | None:intergenic |
| AACTCGAGTGTGCAATGTTC+TGG | 0.374857 | 7.3:+62133981 | MS.gene037246:CDS |
| AACTCAACAATCCTGATCTC+AGG | 0.384176 | 7.3:+62131622 | MS.gene037246:CDS |
| TTGGGCTGTGGTGCTAGATT+GGG | 0.395336 | 7.3:-62131568 | None:intergenic |
| CTTGCTAGTCTTGGAGTCAT+TGG | 0.399485 | 7.3:+62134666 | MS.gene037246:CDS |
| CATTTAAGGCTTGCTAGTCT+TGG | 0.414086 | 7.3:+62134657 | MS.gene037246:CDS |
| CTAACTCGCTTGTCGTTTGA+AGG | 0.424446 | 7.3:-62134623 | None:intergenic |
| GGATGCCATGCTTTGGGCTG+TGG | 0.432887 | 7.3:-62131580 | None:intergenic |
| TCGCTTGTCGTTTGAAGGAA+TGG | 0.449153 | 7.3:-62134618 | None:intergenic |
| TTCAATAACAAGGCGTTCCA+TGG | 0.458343 | 7.3:-62131601 | None:intergenic |
| TGCCTACGCAGCATGGAAAT+CGG | 0.460606 | 7.3:+62135402 | MS.gene037246:CDS |
| TACTATTGAAATATTTGTAC+AGG | 0.478947 | 7.3:+62133215 | MS.gene037246:CDS |
| TGCTCTTCGTGTTCTCTCCA+AGG | 0.482455 | 7.3:+62131650 | MS.gene037246:CDS |
| AGCCCAAAGCATGGCATCCA+TGG | 0.487495 | 7.3:+62131584 | MS.gene037246:CDS |
| AGATTCAACAGCGGAATAGT+AGG | 0.487502 | 7.3:-62133943 | None:intergenic |
| AAGCCTTAAATGCTCAAATT+GGG | 0.502413 | 7.3:-62134646 | None:intergenic |
| TCACAGGTTAACACCAAAGA+AGG | 0.528410 | 7.3:+62135342 | MS.gene037246:intron |
| TCTTGGAGTCATTGGTGCAT+TGG | 0.530074 | 7.3:+62134674 | MS.gene037246:CDS |
| TCCACTATGCCTACGCAGCA+TGG | 0.546502 | 7.3:+62135395 | MS.gene037246:CDS |
| ACTCAACAATCCTGATCTCA+GGG | 0.561365 | 7.3:+62131623 | MS.gene037246:CDS |
| GATTGGGATGAAGCAGTTCG+AGG | 0.563459 | 7.3:-62131552 | None:intergenic |
| TCCGCTGTTGAATCTTACTC+AGG | 0.564161 | 7.3:+62133951 | MS.gene037246:CDS |
| TCCATGCTGCGTAGGCATAG+TGG | 0.580220 | 7.3:-62135396 | None:intergenic |
| GAATTATCTCACTTCTCAGA+AGG | 0.602747 | 7.3:-62135374 | None:intergenic |
| TGCCGATTTCCATGCTGCGT+AGG | 0.604124 | 7.3:-62135404 | None:intergenic |
| AGTCATTGGTGCATTGGTGA+AGG | 0.613240 | 7.3:+62134680 | MS.gene037246:CDS |
| TAGCACCACAGCCCAAAGCA+TGG | 0.626075 | 7.3:+62131575 | MS.gene037246:CDS |
| GATTGTTGAGTTCAATAACA+AGG | 0.670356 | 7.3:-62131611 | None:intergenic |
| GCCTGAGTAAGATTCAACAG+CGG | 0.773865 | 7.3:-62133952 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATTAACATATATTAAAA+TGG | - | chr7.3:62132969-62132988 | None:intergenic | 10.0% |
| !! | GAAATTATTATAATTAACAA+AGG | - | chr7.3:62135303-62135322 | None:intergenic | 10.0% |
| !! | TATGTTAATCATTATTAATT+AGG | + | chr7.3:62132977-62132996 | MS.gene037246:intron | 10.0% |
| !! | TGATTAACATATATTAAAAT+GGG | - | chr7.3:62132968-62132987 | None:intergenic | 10.0% |
| !! | TTGAAAACATAAATATAAAT+TGG | - | chr7.3:62133576-62133595 | None:intergenic | 10.0% |
| !!! | AAAAAATTAACTTGAATAAT+TGG | + | chr7.3:62132312-62132331 | MS.gene037246:intron | 10.0% |
| !!! | ATTAGTAACTTTAAAATTTT+TGG | + | chr7.3:62134921-62134940 | MS.gene037246:intron | 10.0% |
| !!! | ATTATTTTTATAATGTTCTT+AGG | + | chr7.3:62135017-62135036 | MS.gene037246:intron | 10.0% |
| !!! | TTATTTTTATAATGTTCTTA+GGG | + | chr7.3:62135018-62135037 | MS.gene037246:intron | 10.0% |
| !!! | TTGATTTTCAAATATTTTAT+TGG | - | chr7.3:62134082-62134101 | None:intergenic | 10.0% |
| !!! | TTTATTGTTTTTATTTTTTG+GGG | + | chr7.3:62131863-62131882 | MS.gene037246:intron | 10.0% |
| !!! | TTTTAAAGTTACTAATAAAT+TGG | - | chr7.3:62134917-62134936 | None:intergenic | 10.0% |
| !! | AAAATACATATTAGGAATTT+GGG | + | chr7.3:62135141-62135160 | MS.gene037246:intron | 15.0% |
| !! | GAAAAAAGTTATTATGTATT+TGG | + | chr7.3:62133409-62133428 | MS.gene037246:intron | 15.0% |
| !! | TAACAAAGGAAAAATAAATA+TGG | - | chr7.3:62135289-62135308 | None:intergenic | 15.0% |
| !! | TTTAAAAAAAATAAGTGGTT+AGG | - | chr7.3:62135224-62135243 | None:intergenic | 15.0% |
| !!! | AGAAAATGAAAATTTTCATT+TGG | + | chr7.3:62132895-62132914 | MS.gene037246:intron | 15.0% |
| !!! | AGATAGTTTTTAAAATAACA+AGG | - | chr7.3:62134953-62134972 | None:intergenic | 15.0% |
| !!! | CTTGATGTTAATAATTTTTA+TGG | + | chr7.3:62134742-62134761 | MS.gene037246:intron | 15.0% |
| !!! | GATTCTTTAAAAAAAATAAG+TGG | - | chr7.3:62135229-62135248 | None:intergenic | 15.0% |
| !!! | TTATTGTTTTTATTTTTTGG+GGG | + | chr7.3:62131864-62131883 | MS.gene037246:intron | 15.0% |
| !!! | TTTCATTTTTTAAGTTTAAG+AGG | + | chr7.3:62133145-62133164 | MS.gene037246:intron | 15.0% |
| !! | AAGACTCTGTAAAAATAAAT+TGG | - | chr7.3:62135474-62135493 | None:intergenic | 20.0% |
| !! | AATGTCTTTATATGATTCTT+TGG | + | chr7.3:62132789-62132808 | MS.gene037246:intron | 20.0% |
| !! | ACTCATAACAAAATAAGAAA+AGG | + | chr7.3:62134769-62134788 | MS.gene037246:intron | 20.0% |
| !! | AGGAATGGATAAAAATATAA+AGG | - | chr7.3:62134606-62134625 | None:intergenic | 20.0% |
| !! | ATATTAGTAACATAAGTGAA+TGG | - | chr7.3:62135546-62135565 | None:intergenic | 20.0% |
| !! | GAAAATACATATTAGGAATT+TGG | + | chr7.3:62135140-62135159 | MS.gene037246:intron | 20.0% |
| !! | TACTATTGAAATATTTGTAC+AGG | + | chr7.3:62133215-62133234 | MS.gene037246:CDS | 20.0% |
| !! | TCAAAAGTTAAAAAAAAGCA+AGG | - | chr7.3:62133503-62133522 | None:intergenic | 20.0% |
| !! | TTGTTTATATGAATTTGACT+TGG | + | chr7.3:62135494-62135513 | MS.gene037246:intron | 20.0% |
| !!! | ATTCCTAATATGTATTTTCA+AGG | - | chr7.3:62135139-62135158 | None:intergenic | 20.0% |
| !!! | CCATTTTTAATATCTTTCAT+GGG | + | chr7.3:62131699-62131718 | MS.gene037246:intron | 20.0% |
| !!! | GAAGATTTGTTTCAATTTTA+AGG | + | chr7.3:62132011-62132030 | MS.gene037246:intron | 20.0% |
| !!! | GGTGAGAATAATATTTTATT+AGG | + | chr7.3:62132998-62133017 | MS.gene037246:intron | 20.0% |
| !!! | TAATATTTTATTAGGTGCTA+TGG | + | chr7.3:62133006-62133025 | MS.gene037246:intron | 20.0% |
| !!! | TCCATTTTTAATATCTTTCA+TGG | + | chr7.3:62131698-62131717 | MS.gene037246:intron | 20.0% |
| !!! | TTTGGATAACTATGATTTTT+TGG | + | chr7.3:62132807-62132826 | MS.gene037246:intron | 20.0% |
| !!! | TTTTTAAGTTTAAGAGGATT+GGG | + | chr7.3:62133151-62133170 | MS.gene037246:intron | 20.0% |
| !!! | TTTTTTAAGTTTAAGAGGAT+TGG | + | chr7.3:62133150-62133169 | MS.gene037246:intron | 20.0% |
| !!! | TTTTTTTAAAATTGTCCAAG+AGG | + | chr7.3:62133711-62133730 | MS.gene037246:intron | 20.0% |
| ! | AAAATTATGTCAGATGATGA+TGG | + | chr7.3:62135615-62135634 | MS.gene037246:intron | 25.0% |
| ! | AAATTGGTGAATGAATGAAA+CGG | - | chr7.3:62133560-62133579 | None:intergenic | 25.0% |
| ! | ACAAATGAGACATGATTATA+AGG | + | chr7.3:62133644-62133663 | MS.gene037246:intron | 25.0% |
| ! | CAAATGAGACATGATTATAA+GGG | + | chr7.3:62133645-62133664 | MS.gene037246:intron | 25.0% |
| ! | CCATAAGAATTCCATAATAA+AGG | - | chr7.3:62133195-62133214 | None:intergenic | 25.0% |
| ! | CCCATGAAAGATATTAAAAA+TGG | - | chr7.3:62131702-62131721 | None:intergenic | 25.0% |
| ! | CCTTTATTATGGAATTCTTA+TGG | + | chr7.3:62133192-62133211 | MS.gene037246:CDS | 25.0% |
| ! | GTAAGAATGTGATAGTTAAT+AGG | + | chr7.3:62132241-62132260 | MS.gene037246:intron | 25.0% |
| ! | GTTCCTTGAAAATACATATT+AGG | + | chr7.3:62135133-62135152 | MS.gene037246:intron | 25.0% |
| ! | TAAGAAAGAGATGATTAGAA+AGG | + | chr7.3:62132201-62132220 | MS.gene037246:intron | 25.0% |
| ! | TGTTACAAAATTGCATTAGT+TGG | + | chr7.3:62132077-62132096 | MS.gene037246:intron | 25.0% |
| ! | TTGTGATGTGAAACTATATT+TGG | + | chr7.3:62134824-62134843 | MS.gene037246:intron | 25.0% |
| !! | AATAGAGAAACTAACAGTTT+TGG | - | chr7.3:62135439-62135458 | None:intergenic | 25.0% |
| !! | ACAAAAATGTCATTTCTCAA+TGG | + | chr7.3:62134226-62134245 | MS.gene037246:CDS | 25.0% |
| !! | AGAAATCTAGAACAATTAAG+AGG | - | chr7.3:62134271-62134290 | None:intergenic | 25.0% |
| !! | AGAAATGACATTTTTGTATC+AGG | - | chr7.3:62134223-62134242 | None:intergenic | 25.0% |
| !! | AGATTGATCATTTGTTACTA+AGG | + | chr7.3:62133336-62133355 | MS.gene037246:intron | 25.0% |
| !! | GAAATGACATTTTTGTATCA+GGG | - | chr7.3:62134222-62134241 | None:intergenic | 25.0% |
| !! | GATATATTGAAGTTATTTCC+TGG | - | chr7.3:62133924-62133943 | None:intergenic | 25.0% |
| !! | GATCTAGATTTTATGACAAA+TGG | - | chr7.3:62132490-62132509 | None:intergenic | 25.0% |
| !! | GTTCAAATATTTGTTGAGAA+AGG | - | chr7.3:62132704-62132723 | None:intergenic | 25.0% |
| !! | TGTATGTGTCTTAATTTTAG+TGG | + | chr7.3:62133383-62133402 | MS.gene037246:intron | 25.0% |
| !! | TGTGATATTCTTTATTTCGT+GGG | + | chr7.3:62132132-62132151 | MS.gene037246:intron | 25.0% |
| !! | TTGTGATATTCTTTATTTCG+TGG | + | chr7.3:62132131-62132150 | MS.gene037246:intron | 25.0% |
| !!! | ATCAATTGTCATTTTACAAC+CGG | - | chr7.3:62133798-62133817 | None:intergenic | 25.0% |
| !!! | TATTTTTTGGGGGTTTTTTT+GGG | + | chr7.3:62131874-62131893 | MS.gene037246:intron | 25.0% |
| !!! | TCTAAGAGTATTACAAACAA+GGG | - | chr7.3:62133317-62133336 | None:intergenic | 25.0% |
| !!! | TTATTTTTTGGGGGTTTTTT+TGG | + | chr7.3:62131873-62131892 | MS.gene037246:intron | 25.0% |
| AAAACGACTACATACACAAA+TGG | + | chr7.3:62134109-62134128 | MS.gene037246:intron | 30.0% | |
| AAGCCTTAAATGCTCAAATT+GGG | - | chr7.3:62134649-62134668 | None:intergenic | 30.0% | |
| AGCTGCACATAATTAAGAAA+TGG | - | chr7.3:62134577-62134596 | None:intergenic | 30.0% | |
| AGTTGGAAAATAAAAGGTGA+TGG | + | chr7.3:62133670-62133689 | MS.gene037246:intron | 30.0% | |
| AGTTTGATCAATTGATGTGA+AGG | - | chr7.3:62135726-62135745 | None:intergenic | 30.0% | |
| ATATGACTAGAATCTCATTC+TGG | - | chr7.3:62132837-62132856 | None:intergenic | 30.0% | |
| ATGGACAAAAGAAAAGTAGA+TGG | - | chr7.3:62131683-62131702 | None:intergenic | 30.0% | |
| GAATGGCAAAAAAATTCAGA+AGG | - | chr7.3:62135529-62135548 | None:intergenic | 30.0% | |
| GATTGTTGAGTTCAATAACA+AGG | - | chr7.3:62131614-62131633 | None:intergenic | 30.0% | |
| GTTCATTCTTTAGTGTATCA+TGG | + | chr7.3:62131936-62131955 | MS.gene037246:intron | 30.0% | |
| TCATGGATTTGAATTCTCTA+CGG | + | chr7.3:62134463-62134482 | MS.gene037246:intron | 30.0% | |
| TGAATCTACGAAGCATAAAA+AGG | + | chr7.3:62132176-62132195 | MS.gene037246:intron | 30.0% | |
| TGACTATCATGTACAAAAGA+AGG | - | chr7.3:62135325-62135344 | None:intergenic | 30.0% | |
| TGAGACAAAAGAGAATAACA+TGG | - | chr7.3:62135756-62135775 | None:intergenic | 30.0% | |
| TGGACAAAAGAAAAGTAGAT+GGG | - | chr7.3:62131682-62131701 | None:intergenic | 30.0% | |
| TTCTATCATGAAAGTCAGAT+TGG | - | chr7.3:62132359-62132378 | None:intergenic | 30.0% | |
| ! | CAGATAGTGATAATTTTTCC+AGG | + | chr7.3:62133903-62133922 | MS.gene037246:intron | 30.0% |
| ! | GATGGTTTGATTTATGTTTG+TGG | + | chr7.3:62135633-62135652 | MS.gene037246:intron | 30.0% |
| !! | CAGCAAAAAACTACTTTTAG+AGG | - | chr7.3:62135056-62135075 | None:intergenic | 30.0% |
| !! | CTCTAAGAGTATTACAAACA+AGG | - | chr7.3:62133318-62133337 | None:intergenic | 30.0% |
| !!! | AGTAGTTCAAGTTTTGAACA+TGG | + | chr7.3:62135677-62135696 | MS.gene037246:intron | 30.0% |
| !!! | ATTTTTTGGGGGTTTTTTTG+GGG | + | chr7.3:62131875-62131894 | MS.gene037246:intron | 30.0% |
| !!! | TCAAGTTTTGAACATGGTAT+TGG | + | chr7.3:62135683-62135702 | MS.gene037246:intron | 30.0% |
| AAGGAAATCTATGCCTTCTT+TGG | - | chr7.3:62135358-62135377 | None:intergenic | 35.0% | |
| AAGTAGATGGGTAAAAACCT+TGG | - | chr7.3:62131670-62131689 | None:intergenic | 35.0% | |
| ACATGATTATAAGGGAGAGT+TGG | + | chr7.3:62133653-62133672 | MS.gene037246:intron | 35.0% | |
| AGGGAGAGTTGGAAAATAAA+AGG | + | chr7.3:62133664-62133683 | MS.gene037246:intron | 35.0% | |
| AGTACTCTGAATAAGAGTCA+TGG | + | chr7.3:62134446-62134465 | MS.gene037246:intron | 35.0% | |
| ATCAAAGTTATCATCTCTGC+AGG | + | chr7.3:62135572-62135591 | MS.gene037246:intron | 35.0% | |
| CAAGCCTTAAATGCTCAAAT+TGG | - | chr7.3:62134650-62134669 | None:intergenic | 35.0% | |
| CGCTTTACATGTTCTCTTAA+AGG | + | chr7.3:62132568-62132587 | MS.gene037246:intron | 35.0% | |
| GAATTATCTCACTTCTCAGA+AGG | - | chr7.3:62135377-62135396 | None:intergenic | 35.0% | |
| GGTTAGATGTAGTCAATTGT+AGG | + | chr7.3:62134488-62134507 | MS.gene037246:intron | 35.0% | |
| TAAGTTCAAATCTCCTCAAC+CGG | + | chr7.3:62133776-62133795 | MS.gene037246:intron | 35.0% | |
| TAGATAATTCCTCGAAGAGT+TGG | - | chr7.3:62132662-62132681 | None:intergenic | 35.0% | |
| TAGCCCAATTTGAGCATTTA+AGG | + | chr7.3:62134643-62134662 | MS.gene037246:CDS | 35.0% | |
| TCTCAAGAAATCCAGATCTT+TGG | + | chr7.3:62131724-62131743 | MS.gene037246:intron | 35.0% | |
| TTATGCTTCGTAGATTCACA+GGG | - | chr7.3:62132174-62132193 | None:intergenic | 35.0% | |
| TTTATGCTTCGTAGATTCAC+AGG | - | chr7.3:62132175-62132194 | None:intergenic | 35.0% | |
| TTTGTGATATGCAAGTGAGA+TGG | - | chr7.3:62132514-62132533 | None:intergenic | 35.0% | |
| ! | AAACTTACCAAGAGCACAAT+AGG | - | chr7.3:62135105-62135124 | None:intergenic | 35.0% |
| ! | AACATGGTATTGGAAAGTGT+TGG | + | chr7.3:62135693-62135712 | MS.gene037246:intron | 35.0% |
| ! | CATAATAAAGGTGCAAGTTC+CGG | - | chr7.3:62133183-62133202 | None:intergenic | 35.0% |
| ! | CATGTTTTCTTTACAGTGTG+TGG | + | chr7.3:62134189-62134208 | MS.gene037246:intron | 35.0% |
| ! | CTTTTGTACATGATAGTCAC+AGG | + | chr7.3:62135326-62135345 | MS.gene037246:intron | 35.0% |
| ! | TAAGAGGATTGGGTTATTTC+CGG | + | chr7.3:62133161-62133180 | MS.gene037246:CDS | 35.0% |
| AACTCAACAATCCTGATCTC+AGG | + | chr7.3:62131622-62131641 | MS.gene037246:CDS | 40.0% | |
| ACATGTAATCCAACTCTTCG+AGG | + | chr7.3:62132650-62132669 | MS.gene037246:intron | 40.0% | |
| ACTCAACAATCCTGATCTCA+GGG | + | chr7.3:62131623-62131642 | MS.gene037246:CDS | 40.0% | |
| AGATTCAACAGCGGAATAGT+AGG | - | chr7.3:62133946-62133965 | None:intergenic | 40.0% | |
| ATGCGACTAAGTCTACTGAA+AGG | - | chr7.3:62132755-62132774 | None:intergenic | 40.0% | |
| CGGAACTTGCACCTTTATTA+TGG | + | chr7.3:62133181-62133200 | MS.gene037246:CDS | 40.0% | |
| GGATTACATGTGTGTGTTCA+GGG | - | chr7.3:62132641-62132660 | None:intergenic | 40.0% | |
| GTTCTTTGCTTTAGTACCTC+TGG | + | chr7.3:62133281-62133300 | MS.gene037246:intron | 40.0% | |
| TCACAACTTCTCCAAAGATC+TGG | - | chr7.3:62131738-62131757 | None:intergenic | 40.0% | |
| TCACAGGTTAACACCAAAGA+AGG | + | chr7.3:62135342-62135361 | MS.gene037246:intron | 40.0% | |
| TGCGACTAAGTCTACTGAAA+GGG | - | chr7.3:62132754-62132773 | None:intergenic | 40.0% | |
| TGGATTACATGTGTGTGTTC+AGG | - | chr7.3:62132642-62132661 | None:intergenic | 40.0% | |
| TTGCAATCCTATTGTGCTCT+TGG | + | chr7.3:62135095-62135114 | MS.gene037246:intron | 40.0% | |
| TTTGTCTCAACATCCTAGGT+TGG | + | chr7.3:62135767-62135786 | MS.gene037246:intron | 40.0% | |
| ! | CTCTTTTGTCTCAACATCCT+AGG | + | chr7.3:62135763-62135782 | MS.gene037246:intron | 40.0% |
| ! | TTCAATAACAAGGCGTTCCA+TGG | - | chr7.3:62131604-62131623 | None:intergenic | 40.0% |
| !! | ACATGAGAGAAAAGTGCTAG+AGG | - | chr7.3:62134174-62134193 | None:intergenic | 40.0% |
| !! | CAATGTTCTGGAACTACTTC+AGG | + | chr7.3:62133993-62134012 | MS.gene037246:CDS | 40.0% |
| !! | CATTTAAGGCTTGCTAGTCT+TGG | + | chr7.3:62134657-62134676 | MS.gene037246:CDS | 40.0% |
| !!! | TGTCATTTTACAACCGGTTG+AGG | - | chr7.3:62133792-62133811 | None:intergenic | 40.0% |
| AACTCGAGTGTGCAATGTTC+TGG | + | chr7.3:62133981-62134000 | MS.gene037246:CDS | 45.0% | |
| GCCTGAGTAAGATTCAACAG+CGG | - | chr7.3:62133955-62133974 | None:intergenic | 45.0% | |
| GCGACTAAGTCTACTGAAAG+GGG | - | chr7.3:62132753-62132772 | None:intergenic | 45.0% | |
| GGATTTGAATTCTCTACGGC+TGG | + | chr7.3:62134467-62134486 | MS.gene037246:intron | 45.0% | |
| GGCGAAAAACACAACAGTAG+TGG | + | chr7.3:62133430-62133449 | MS.gene037246:intron | 45.0% | |
| TCCGCTGTTGAATCTTACTC+AGG | + | chr7.3:62133951-62133970 | MS.gene037246:CDS | 45.0% | |
| TCTTGGAGTCATTGGTGCAT+TGG | + | chr7.3:62134674-62134693 | MS.gene037246:CDS | 45.0% | |
| TTCCATGGATGCCATGCTTT+GGG | - | chr7.3:62131589-62131608 | None:intergenic | 45.0% | |
| ! | AGTCATTGGTGCATTGGTGA+AGG | + | chr7.3:62134680-62134699 | MS.gene037246:CDS | 45.0% |
| ! | CAAGGGAAATAGTTTGCCAG+AGG | - | chr7.3:62133300-62133319 | None:intergenic | 45.0% |
| ! | CTAACTCGCTTGTCGTTTGA+AGG | - | chr7.3:62134626-62134645 | None:intergenic | 45.0% |
| ! | TCGCTTGTCGTTTGAAGGAA+TGG | - | chr7.3:62134621-62134640 | None:intergenic | 45.0% |
| !! | AGAGCATTTTCCCTGAGATC+AGG | - | chr7.3:62131636-62131655 | None:intergenic | 45.0% |
| !! | CTGCACTGTCACACTAGTTT+TGG | + | chr7.3:62131825-62131844 | MS.gene037246:intron | 45.0% |
| !! | CTTGCTAGTCTTGGAGTCAT+TGG | + | chr7.3:62134666-62134685 | MS.gene037246:CDS | 45.0% |
| !!! | ATTTTATTGTTTTTATTTTT+TGG | + | chr7.3:62131861-62131880 | MS.gene037246:intron | 5.0% |
| !!! | TTTTATTGTTTTTATTTTTT+GGG | + | chr7.3:62131862-62131881 | MS.gene037246:intron | 5.0% |
| ACCACTGAGCTACAACCTCT+TGG | - | chr7.3:62133729-62133748 | None:intergenic | 50.0% | |
| GATTGGGATGAAGCAGTTCG+AGG | - | chr7.3:62131555-62131574 | None:intergenic | 50.0% | |
| GTTCCATGGATGCCATGCTT+TGG | - | chr7.3:62131590-62131609 | None:intergenic | 50.0% | |
| TCCAAGAGGTTGTAGCTCAG+TGG | + | chr7.3:62133725-62133744 | MS.gene037246:intron | 50.0% | |
| TGCCTACGCAGCATGGAAAT+CGG | + | chr7.3:62135402-62135421 | MS.gene037246:CDS | 50.0% | |
| TGCTCTTCGTGTTCTCTCCA+AGG | + | chr7.3:62131650-62131669 | MS.gene037246:CDS | 50.0% | |
| ! | TTGGGCTGTGGTGCTAGATT+GGG | - | chr7.3:62131571-62131590 | None:intergenic | 50.0% |
| ! | TTTGGGCTGTGGTGCTAGAT+TGG | - | chr7.3:62131572-62131591 | None:intergenic | 50.0% |
| AGCCCAAAGCATGGCATCCA+TGG | + | chr7.3:62131584-62131603 | MS.gene037246:CDS | 55.0% | |
| TAGCACCACAGCCCAAAGCA+TGG | + | chr7.3:62131575-62131594 | MS.gene037246:CDS | 55.0% | |
| TCCACTATGCCTACGCAGCA+TGG | + | chr7.3:62135395-62135414 | MS.gene037246:CDS | 55.0% | |
| TCCATGCTGCGTAGGCATAG+TGG | - | chr7.3:62135399-62135418 | None:intergenic | 55.0% | |
| !! | TGCCGATTTCCATGCTGCGT+AGG | - | chr7.3:62135407-62135426 | None:intergenic | 55.0% |
| ! | GGATGCCATGCTTTGGGCTG+TGG | - | chr7.3:62131583-62131602 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 62131525 | 62135793 | 62131525 | ID=MS.gene037246 |
| chr7.3 | mRNA | 62131525 | 62135793 | 62131525 | ID=MS.gene037246.t1;Parent=MS.gene037246 |
| chr7.3 | exon | 62131525 | 62131671 | 62131525 | ID=MS.gene037246.t1.exon1;Parent=MS.gene037246.t1 |
| chr7.3 | CDS | 62131525 | 62131671 | 62131525 | ID=cds.MS.gene037246.t1;Parent=MS.gene037246.t1 |
| chr7.3 | exon | 62133159 | 62133236 | 62133159 | ID=MS.gene037246.t1.exon2;Parent=MS.gene037246.t1 |
| chr7.3 | CDS | 62133159 | 62133236 | 62133159 | ID=cds.MS.gene037246.t1;Parent=MS.gene037246.t1 |
| chr7.3 | exon | 62133925 | 62134014 | 62133925 | ID=MS.gene037246.t1.exon3;Parent=MS.gene037246.t1 |
| chr7.3 | CDS | 62133925 | 62134014 | 62133925 | ID=cds.MS.gene037246.t1;Parent=MS.gene037246.t1 |
| chr7.3 | exon | 62134205 | 62134247 | 62134205 | ID=MS.gene037246.t1.exon4;Parent=MS.gene037246.t1 |
| chr7.3 | CDS | 62134205 | 62134247 | 62134205 | ID=cds.MS.gene037246.t1;Parent=MS.gene037246.t1 |
| chr7.3 | exon | 62134595 | 62134701 | 62134595 | ID=MS.gene037246.t1.exon5;Parent=MS.gene037246.t1 |
| chr7.3 | CDS | 62134595 | 62134701 | 62134595 | ID=cds.MS.gene037246.t1;Parent=MS.gene037246.t1 |
| chr7.3 | exon | 62135348 | 62135443 | 62135348 | ID=MS.gene037246.t1.exon6;Parent=MS.gene037246.t1 |
| chr7.3 | CDS | 62135348 | 62135443 | 62135348 | ID=cds.MS.gene037246.t1;Parent=MS.gene037246.t1 |
| chr7.3 | exon | 62135785 | 62135793 | 62135785 | ID=MS.gene037246.t1.exon7;Parent=MS.gene037246.t1 |
| chr7.3 | CDS | 62135785 | 62135793 | 62135785 | ID=cds.MS.gene037246.t1;Parent=MS.gene037246.t1 |
| Gene Sequence |
| Protein sequence |
