Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037250.t1 | XP_024627300.1 | 87.9 | 306 | 33 | 2 | 1 | 302 | 1 | 306 | 5.60E-144 | 520.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037250.t1 | Q6IP65 | 54.8 | 261 | 118 | 0 | 33 | 293 | 28 | 288 | 4.4e-73 | 276.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037250.t1 | A0A396GV60 | 87.9 | 306 | 33 | 2 | 1 | 302 | 1 | 306 | 4.0e-144 | 520.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037250.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037250.t1 | MTR_5g093460 | 66.102 | 295 | 99 | 1 | 5 | 299 | 144 | 437 | 9.23e-132 | 381 |
| MS.gene037250.t1 | MTR_5g093460 | 86.260 | 131 | 17 | 1 | 24 | 154 | 1 | 130 | 1.03e-71 | 228 |
| MS.gene037250.t1 | MTR_6g065170 | 64.000 | 300 | 108 | 0 | 1 | 300 | 11 | 310 | 1.07e-130 | 374 |
| MS.gene037250.t1 | MTR_8g106940 | 62.667 | 300 | 112 | 0 | 1 | 300 | 11 | 310 | 4.78e-130 | 373 |
| MS.gene037250.t1 | MTR_3g018640 | 64.360 | 289 | 103 | 0 | 3 | 291 | 13 | 301 | 3.31e-125 | 360 |
| MS.gene037250.t1 | MTR_3g053170 | 62.409 | 274 | 103 | 0 | 28 | 301 | 26 | 299 | 9.47e-119 | 343 |
| MS.gene037250.t1 | MTR_1g056470 | 65.401 | 237 | 82 | 0 | 11 | 247 | 17 | 253 | 1.59e-109 | 318 |
| MS.gene037250.t1 | MTR_1g043540 | 61.017 | 118 | 45 | 1 | 132 | 249 | 9 | 125 | 1.94e-40 | 138 |
| MS.gene037250.t1 | MTR_1g043520 | 40.870 | 115 | 31 | 3 | 158 | 272 | 29 | 106 | 3.20e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037250.t1 | AT3G20800 | 57.235 | 311 | 122 | 1 | 1 | 300 | 1 | 311 | 1.20e-114 | 333 |
| MS.gene037250.t1 | AT5G12980 | 54.074 | 270 | 124 | 0 | 22 | 291 | 29 | 298 | 8.02e-100 | 296 |
| MS.gene037250.t1 | AT2G32550 | 34.538 | 249 | 137 | 4 | 57 | 288 | 42 | 281 | 3.95e-37 | 134 |
| MS.gene037250.t1 | AT2G32550 | 32.852 | 277 | 158 | 5 | 31 | 288 | 53 | 320 | 5.08e-37 | 134 |
| MS.gene037250.t1 | AT2G32550 | 36.364 | 198 | 123 | 2 | 94 | 288 | 29 | 226 | 9.38e-35 | 126 |
Find 55 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCCCAATTTGAGCATTTA+AGG | 0.127092 | 7.3:+61956950 | MS.gene037250:CDS |
| CGAAACTTGCACCTTTATTA+TGG | 0.178926 | 7.3:+61955486 | MS.gene037250:CDS |
| CAAGCCTTAAATGCTCAAAT+TGG | 0.232859 | 7.3:-61956954 | None:intergenic |
| AAGGAAATCTATGCTTTCTT+TGG | 0.255899 | 7.3:-61957661 | None:intergenic |
| ATGAAGTTGCATGAAAATAT+TGG | 0.267240 | 7.3:+61959691 | MS.gene037250:CDS |
| CCTTTATTATGGAATTCTTA+TGG | 0.279542 | 7.3:+61955497 | MS.gene037250:CDS |
| AATAGAGAAACTAACAGTTT+TGG | 0.311116 | 7.3:-61957742 | None:intergenic |
| CATAATAAAGGTGCAAGTTT+CGG | 0.333949 | 7.3:-61955485 | None:intergenic |
| TGAAGTTGCATGAAAATATT+GGG | 0.343625 | 7.3:+61959692 | MS.gene037250:CDS |
| GGGCTTGCAATGCATTAAAA+AGG | 0.353362 | 7.3:+61958340 | MS.gene037250:intron |
| ATTCCCTCCACCTGGTACTA+AGG | 0.362304 | 7.3:-61959728 | None:intergenic |
| TTTGTGCTGTGGTGCTAGAT+TGG | 0.371012 | 7.3:-61953863 | None:intergenic |
| CCATAAGAATTCCATAATAA+AGG | 0.371929 | 7.3:-61955497 | None:intergenic |
| AACTCGAGTGTGCAATGTTC+TGG | 0.374857 | 7.3:+61956288 | MS.gene037250:CDS |
| AGGAATGGATAAAGATATAA+AGG | 0.391508 | 7.3:-61956910 | None:intergenic |
| TTGTGCTGTGGTGCTAGATT+GGG | 0.395336 | 7.3:-61953862 | None:intergenic |
| CTTGCTAGTCTTGGAGTCAT+TGG | 0.399485 | 7.3:+61956973 | MS.gene037250:CDS |
| CATTTAAGGCTTGCTAGTCT+TGG | 0.414086 | 7.3:+61956964 | MS.gene037250:CDS |
| GATTGGGATGAAGCAGTTAG+AGG | 0.438610 | 7.3:-61953846 | None:intergenic |
| TCGCTTGTCGTTCGAAGGAA+TGG | 0.440010 | 7.3:-61956925 | None:intergenic |
| TTCAATAACAAGGCGTTCCA+TGG | 0.458343 | 7.3:-61953895 | None:intergenic |
| TGCCTACGCAGCATGGAAAT+CGG | 0.460606 | 7.3:+61957708 | MS.gene037250:CDS |
| GATGGTTTGATTTATGTTTG+TGG | 0.460782 | 7.3:+61958099 | MS.gene037250:CDS |
| AGATTCAACAGCGGAATAGT+AGG | 0.487502 | 7.3:-61956250 | None:intergenic |
| AAGCCTTAAATGCTCAAATT+GGG | 0.502413 | 7.3:-61956953 | None:intergenic |
| TGAAAATATTGGGGTGAACC+AGG | 0.503360 | 7.3:+61959702 | MS.gene037250:CDS |
| AGCACAAAGCATGGCATCCA+TGG | 0.505480 | 7.3:+61953878 | MS.gene037250:CDS |
| AAGATGAAACAACTTGGAGC+TGG | 0.506447 | 7.3:+61959665 | MS.gene037250:CDS |
| TGCTCTTCGTGTTCTCTCCA+AGG | 0.526049 | 7.3:+61953944 | MS.gene037250:CDS |
| TCTTGGAGTCATTGGTGCAT+TGG | 0.530074 | 7.3:+61956981 | MS.gene037250:CDS |
| CACCTGGTACTAAGGGAACC+TGG | 0.533033 | 7.3:-61959720 | None:intergenic |
| GAATTATCTCACTTCTAAGA+AGG | 0.538844 | 7.3:-61957680 | None:intergenic |
| TTCAGGAAGATGAAACAACT+TGG | 0.543401 | 7.3:+61959659 | MS.gene037250:intron |
| TCCACTATGCCTACGCAGCA+TGG | 0.546502 | 7.3:+61957701 | MS.gene037250:CDS |
| AAAATTATGTCAGATGGTGA+TGG | 0.548198 | 7.3:+61958081 | MS.gene037250:CDS |
| GGATGCCATGCTTTGTGCTG+TGG | 0.548520 | 7.3:-61953874 | None:intergenic |
| CTAACTCGCTTGTCGTTCGA+AGG | 0.550213 | 7.3:-61956930 | None:intergenic |
| AACCAGGTTCCCTTAGTACC+AGG | 0.560044 | 7.3:+61959718 | MS.gene037250:CDS |
| TCCGCTGTTGAATCTTACTC+AGG | 0.564161 | 7.3:+61956258 | MS.gene037250:CDS |
| GTTCCCTTAGTACCAGGTGG+AGG | 0.568228 | 7.3:+61959724 | MS.gene037250:CDS |
| TTCCCTCCACCTGGTACTAA+GGG | 0.571710 | 7.3:-61959727 | None:intergenic |
| AGATGAAACAACTTGGAGCT+GGG | 0.578633 | 7.3:+61959666 | MS.gene037250:CDS |
| TCCATGCTGCGTAGGCATAG+TGG | 0.580220 | 7.3:-61957702 | None:intergenic |
| TTCCCTTAGTACCAGGTGGA+GGG | 0.586677 | 7.3:+61959725 | MS.gene037250:CDS |
| TGCCGATTTCCATGCTGCGT+AGG | 0.604124 | 7.3:-61957710 | None:intergenic |
| TAGCACCACAGCACAAAGCA+TGG | 0.612717 | 7.3:+61953869 | MS.gene037250:CDS |
| AGTCATTGGTGCATTGGTGA+AGG | 0.613240 | 7.3:+61956987 | MS.gene037250:CDS |
| TATCATTGATTCCCTCCACC+TGG | 0.621495 | 7.3:-61959736 | None:intergenic |
| AGTTTGATCAATTGATGTGA+AGG | 0.628164 | 7.3:-61958189 | None:intergenic |
| AACATGGTATTGGAAAGTGT+TGG | 0.637520 | 7.3:+61958159 | MS.gene037250:CDS |
| GATTGTTGAGTTCAATAACA+AGG | 0.670356 | 7.3:-61953905 | None:intergenic |
| GAAGTTGCATGAAAATATTG+GGG | 0.686036 | 7.3:+61959693 | MS.gene037250:CDS |
| CAGGTTCCCTTAGTACCAGG+TGG | 0.694292 | 7.3:+61959721 | MS.gene037250:CDS |
| TGAGACAAAAGAGAATAACA+TGG | 0.703854 | 7.3:-61958219 | None:intergenic |
| GCCTGAGTAAGATTCAACAG+CGG | 0.773865 | 7.3:-61956259 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTAATATAAATACAATA+TGG | - | chr7.3:61958877-61958896 | None:intergenic | 10.0% |
| !! | ATGATTAACATATATTAAAA+TGG | - | chr7.3:61955274-61955293 | None:intergenic | 10.0% |
| !! | GAAATTATTATAATTAACAA+AGG | - | chr7.3:61957609-61957628 | None:intergenic | 10.0% |
| !! | TAAAAAATAATATTGTGTAT+GGG | + | chr7.3:61955672-61955691 | MS.gene037250:intron | 10.0% |
| !! | TATGTTAATCATTATTAATT+AGG | + | chr7.3:61955282-61955301 | MS.gene037250:intron | 10.0% |
| !! | TGATTAACATATATTAAAAT+GGG | - | chr7.3:61955273-61955292 | None:intergenic | 10.0% |
| !! | TTAAAAAATAATATTGTGTA+TGG | + | chr7.3:61955671-61955690 | MS.gene037250:intron | 10.0% |
| !!! | AAAAAATTAACTTGAATAAT+TGG | + | chr7.3:61954617-61954636 | MS.gene037250:intron | 10.0% |
| !!! | ATTAGTAACTTTAAAATTTA+TGG | + | chr7.3:61957228-61957247 | MS.gene037250:intron | 10.0% |
| !!! | ATTATTTTTATAATGTTCTT+AGG | + | chr7.3:61957324-61957343 | MS.gene037250:intron | 10.0% |
| !!! | TTATTTTTATAATGTTCTTA+GGG | + | chr7.3:61957325-61957344 | MS.gene037250:intron | 10.0% |
| !!! | TTTTAAAGTTACTAATAAAT+TGG | - | chr7.3:61957224-61957243 | None:intergenic | 10.0% |
| !! | AAAATACATATTAGGAATTT+GGG | + | chr7.3:61957448-61957467 | MS.gene037250:intron | 15.0% |
| !! | ATCTTATATCTCATAATAAT+AGG | - | chr7.3:61958983-61959002 | None:intergenic | 15.0% |
| !! | GTATGATAAAAAAATTCAAT+AGG | - | chr7.3:61958501-61958520 | None:intergenic | 15.0% |
| !! | TAACAAAGGAAAAATAAATA+TGG | - | chr7.3:61957595-61957614 | None:intergenic | 15.0% |
| !! | TATTATTATGAGATATAAGA+TGG | + | chr7.3:61958982-61959001 | MS.gene037250:intron | 15.0% |
| !! | TCAAAAGTTAAAAAAAAACA+AGG | - | chr7.3:61955807-61955826 | None:intergenic | 15.0% |
| !! | TGTATAAATTGTTATATTTC+TGG | + | chr7.3:61958849-61958868 | MS.gene037250:intron | 15.0% |
| !! | TTATTTATATGAATTTGACT+TGG | + | chr7.3:61957800-61957819 | MS.gene037250:intron | 15.0% |
| !! | TTGAAAACATAAACATAAAT+TGG | - | chr7.3:61955880-61955899 | None:intergenic | 15.0% |
| !!! | AATATTTTTACACTCTAATT+AGG | + | chr7.3:61959485-61959504 | MS.gene037250:intron | 15.0% |
| !!! | AATGTCTTTATATGATTTTT+TGG | + | chr7.3:61955093-61955112 | MS.gene037250:intron | 15.0% |
| !!! | AGAAAATGAAAATTTTCATT+TGG | + | chr7.3:61955200-61955219 | MS.gene037250:intron | 15.0% |
| !!! | AGATAGTTTTTAAAATAACT+AGG | - | chr7.3:61957260-61957279 | None:intergenic | 15.0% |
| !!! | AGATTCTTTAAAAAAATAAG+TGG | - | chr7.3:61957536-61957555 | None:intergenic | 15.0% |
| !!! | ATATTGTATTTTATAACCTT+AGG | + | chr7.3:61959089-61959108 | MS.gene037250:intron | 15.0% |
| !!! | CTTGATGTTAATAATTTTTA+TGG | + | chr7.3:61957049-61957068 | MS.gene037250:intron | 15.0% |
| !!! | TACTATTGAAATATTTTTAC+AGG | + | chr7.3:61955520-61955539 | MS.gene037250:CDS | 15.0% |
| !!! | TTATTGATGATGTAATTTTT+TGG | - | chr7.3:61958692-61958711 | None:intergenic | 15.0% |
| !!! | TTGATTTTCAAGTATTTTAT+TGG | - | chr7.3:61956389-61956408 | None:intergenic | 15.0% |
| !!! | TTTTAATTACCTTTATACAA+AGG | + | chr7.3:61959583-61959602 | MS.gene037250:intron | 15.0% |
| !!! | TTTTATTTTTGGGTTTTTTT+GGG | + | chr7.3:61954165-61954184 | MS.gene037250:intron | 15.0% |
| !!! | TTTTTATTTTTGGGTTTTTT+TGG | + | chr7.3:61954164-61954183 | MS.gene037250:intron | 15.0% |
| !! | AAATTCTTTCATATTAACAC+AGG | + | chr7.3:61958319-61958338 | MS.gene037250:intron | 20.0% |
| !! | AAGACTCTGTAAAAATAAAT+TGG | - | chr7.3:61957780-61957799 | None:intergenic | 20.0% |
| !! | AATTCTTTCATATTAACACA+GGG | + | chr7.3:61958320-61958339 | MS.gene037250:intron | 20.0% |
| !! | ACAAATGTGAAAATAACTAT+TGG | + | chr7.3:61958521-61958540 | MS.gene037250:intron | 20.0% |
| !! | ACTCATAACAAAAAATGAAA+AGG | + | chr7.3:61957076-61957095 | MS.gene037250:intron | 20.0% |
| !! | AGGTTTAAATTGTTTATAAG+TGG | + | chr7.3:61959389-61959408 | MS.gene037250:intron | 20.0% |
| !! | ATTCAAAAAATTATGTCAGA+TGG | + | chr7.3:61958075-61958094 | MS.gene037250:CDS | 20.0% |
| !! | GAAAAAAGTTATTATGCATT+TGG | + | chr7.3:61955713-61955732 | MS.gene037250:intron | 20.0% |
| !! | GAAAATACATATTAGGAATT+TGG | + | chr7.3:61957447-61957466 | MS.gene037250:intron | 20.0% |
| !! | GTTTAATATTGTAACATCAA+TGG | + | chr7.3:61956057-61956076 | MS.gene037250:intron | 20.0% |
| !! | TTAAGAATGTGATAGTTAAT+AGG | + | chr7.3:61954532-61954551 | MS.gene037250:intron | 20.0% |
| !! | TTAATAGGATGAAATGAAAT+AGG | + | chr7.3:61954547-61954566 | MS.gene037250:intron | 20.0% |
| !!! | ATATTTTCACAAAGTAAATG+AGG | + | chr7.3:61959369-61959388 | MS.gene037250:intron | 20.0% |
| !!! | ATTCCTAATATGTATTTTCA+AGG | - | chr7.3:61957446-61957465 | None:intergenic | 20.0% |
| !!! | CAAATACTCAATTACAATTT+TGG | + | chr7.3:61959555-61959574 | MS.gene037250:intron | 20.0% |
| !!! | CCATTTTTAATATCTTTCAT+GGG | + | chr7.3:61953993-61954012 | MS.gene037250:intron | 20.0% |
| !!! | CTTTAAAAAAATAAGTGGTT+AGG | - | chr7.3:61957531-61957550 | None:intergenic | 20.0% |
| !!! | GAAGATTTGTTTCAAATTTA+AGG | + | chr7.3:61954302-61954321 | MS.gene037250:intron | 20.0% |
| !!! | GATATTGTTTTGATATATTC+AGG | + | chr7.3:61959642-61959661 | MS.gene037250:intron | 20.0% |
| !!! | GGTGAGAATAATATTTTATT+AGG | + | chr7.3:61955303-61955322 | MS.gene037250:intron | 20.0% |
| !!! | TAAATATGATTCCTTTTTGT+TGG | - | chr7.3:61958640-61958659 | None:intergenic | 20.0% |
| !!! | TAATATTTTATTAGGTGCTA+TGG | + | chr7.3:61955311-61955330 | MS.gene037250:intron | 20.0% |
| !!! | TCCATTTTTAATATCTTTCA+TGG | + | chr7.3:61953992-61954011 | MS.gene037250:intron | 20.0% |
| !!! | TGTTTTGCATTATTTGATAT+TGG | + | chr7.3:61959620-61959639 | MS.gene037250:intron | 20.0% |
| !!! | TTGGAATAACTATGATTTTT+TGG | + | chr7.3:61955112-61955131 | MS.gene037250:intron | 20.0% |
| !!! | TTTATTTTTGGGTTTTTTTG+GGG | + | chr7.3:61954166-61954185 | MS.gene037250:intron | 20.0% |
| !!! | TTTCATTTTTTAAGTTTCAG+AGG | + | chr7.3:61955450-61955469 | MS.gene037250:intron | 20.0% |
| !!! | TTTGTTACTCAACATTTTAA+TGG | + | chr7.3:61958544-61958563 | MS.gene037250:intron | 20.0% |
| !!! | TTTTTCTTGTTTTAAAGCTA+AGG | + | chr7.3:61959217-61959236 | MS.gene037250:intron | 20.0% |
| !!! | TTTTTTTAAAATTGTCCAAG+AGG | + | chr7.3:61956015-61956034 | MS.gene037250:intron | 20.0% |
| ! | ACAAAAGAGACATGATTATA+AGG | + | chr7.3:61955948-61955967 | MS.gene037250:intron | 25.0% |
| ! | AGCTGCAAATAATTAAGAAA+GGG | - | chr7.3:61956884-61956903 | None:intergenic | 25.0% |
| ! | AGGAATGGATAAAGATATAA+AGG | - | chr7.3:61956913-61956932 | None:intergenic | 25.0% |
| ! | ATGAAGTTGCATGAAAATAT+TGG | + | chr7.3:61959691-61959710 | MS.gene037250:CDS | 25.0% |
| ! | CAAAAGAGACATGATTATAA+GGG | + | chr7.3:61955949-61955968 | MS.gene037250:intron | 25.0% |
| ! | CCATAAGAATTCCATAATAA+AGG | - | chr7.3:61955500-61955519 | None:intergenic | 25.0% |
| ! | CCCATGAAAGATATTAAAAA+TGG | - | chr7.3:61953996-61954015 | None:intergenic | 25.0% |
| ! | CCTTTATTATGGAATTCTTA+TGG | + | chr7.3:61955497-61955516 | MS.gene037250:CDS | 25.0% |
| ! | GAATGACAAAAAAATTCAGA+AGG | - | chr7.3:61957835-61957854 | None:intergenic | 25.0% |
| ! | GTTCCTTGAAAATACATATT+AGG | + | chr7.3:61957440-61957459 | MS.gene037250:intron | 25.0% |
| ! | TAAATTGTTTATAAGTGGTG+AGG | + | chr7.3:61959394-61959413 | MS.gene037250:intron | 25.0% |
| ! | TAAGAAAGAGATGATTAGAA+AGG | + | chr7.3:61954492-61954511 | MS.gene037250:intron | 25.0% |
| ! | TAATTTCCAATAGTATCCTA+AGG | - | chr7.3:61959108-61959127 | None:intergenic | 25.0% |
| ! | TAGCTGCAAATAATTAAGAA+AGG | - | chr7.3:61956885-61956904 | None:intergenic | 25.0% |
| ! | TGAAGTTGCATGAAAATATT+GGG | + | chr7.3:61959692-61959711 | MS.gene037250:CDS | 25.0% |
| ! | TGAATCTATGAAGCATAAAA+AGG | + | chr7.3:61954467-61954486 | MS.gene037250:intron | 25.0% |
| ! | TGTAAACTACCTTTGTATAA+AGG | - | chr7.3:61959595-61959614 | None:intergenic | 25.0% |
| ! | TGTTACAAAATTGCATTAGT+TGG | + | chr7.3:61954368-61954387 | MS.gene037250:intron | 25.0% |
| ! | TTATAACCTTAGGATACTAT+TGG | + | chr7.3:61959099-61959118 | MS.gene037250:intron | 25.0% |
| ! | TTGTGATGTGAAACTATATT+TGG | + | chr7.3:61957131-61957150 | MS.gene037250:intron | 25.0% |
| ! | TTTGTGTTCTTAAGTTTGAA+GGG | - | chr7.3:61959456-61959475 | None:intergenic | 25.0% |
| !! | AATAGAGAAACTAACAGTTT+TGG | - | chr7.3:61957745-61957764 | None:intergenic | 25.0% |
| !! | ACAAAAATGTCATTTCTCAA+TGG | + | chr7.3:61956533-61956552 | MS.gene037250:CDS | 25.0% |
| !! | AGAAATCTAGAACAATTAAG+AGG | - | chr7.3:61956578-61956597 | None:intergenic | 25.0% |
| !! | AGAAATGACATTTTTGTATC+AGG | - | chr7.3:61956530-61956549 | None:intergenic | 25.0% |
| !! | AGATTGATCATTTGTTACTA+AGG | + | chr7.3:61955641-61955660 | MS.gene037250:intron | 25.0% |
| !! | GAAATGACATTTTTGTATCA+GGG | - | chr7.3:61956529-61956548 | None:intergenic | 25.0% |
| !! | GATATATTGAAGTTATTTCC+TGG | - | chr7.3:61956231-61956250 | None:intergenic | 25.0% |
| !! | GATCTAGATTTTATGACAAA+TGG | - | chr7.3:61954794-61954813 | None:intergenic | 25.0% |
| !! | GTTCAAATATTTGTTGAGAA+AGG | - | chr7.3:61955008-61955027 | None:intergenic | 25.0% |
| !! | TGTGTAATTCTTTATTTCGA+GGG | + | chr7.3:61954423-61954442 | MS.gene037250:intron | 25.0% |
| !! | TTGTGTAATTCTTTATTTCG+AGG | + | chr7.3:61954422-61954441 | MS.gene037250:intron | 25.0% |
| !! | TTTTGTGTTCTTAAGTTTGA+AGG | - | chr7.3:61959457-61959476 | None:intergenic | 25.0% |
| !! | TTTTTATTGTGAGTGTGATA+TGG | + | chr7.3:61956670-61956689 | MS.gene037250:intron | 25.0% |
| !!! | CAGCAAAAAACTATTTTTAG+AGG | - | chr7.3:61957363-61957382 | None:intergenic | 25.0% |
| !!! | TCTAAGAGTATTACAAACAA+GGG | - | chr7.3:61955622-61955641 | None:intergenic | 25.0% |
| !!! | TTATACAATTTTTTGCTAGC+AGG | - | chr7.3:61958836-61958855 | None:intergenic | 25.0% |
| !!! | TTTTTAAGTTTCAGAGGATT+GGG | + | chr7.3:61955456-61955475 | MS.gene037250:intron | 25.0% |
| !!! | TTTTTTAAGTTTCAGAGGAT+TGG | + | chr7.3:61955455-61955474 | MS.gene037250:intron | 25.0% |
| AAAATTATGTCAGATGGTGA+TGG | + | chr7.3:61958081-61958100 | MS.gene037250:CDS | 30.0% | |
| AAGCCTTAAATGCTCAAATT+GGG | - | chr7.3:61956956-61956975 | None:intergenic | 30.0% | |
| AAGGAAATCTATGCTTTCTT+TGG | - | chr7.3:61957664-61957683 | None:intergenic | 30.0% | |
| ACATGATTATAAGGGAGAAT+TGG | + | chr7.3:61955957-61955976 | MS.gene037250:intron | 30.0% | |
| AGATACCTCTTTAACAAGTT+TGG | + | chr7.3:61958582-61958601 | MS.gene037250:intron | 30.0% | |
| AGGGAGAATTGGAAAATAAA+AGG | + | chr7.3:61955968-61955987 | MS.gene037250:intron | 30.0% | |
| AGTTTACTTGCAATCCTATT+GGG | + | chr7.3:61957395-61957414 | MS.gene037250:intron | 30.0% | |
| AGTTTGATCAATTGATGTGA+AGG | - | chr7.3:61958192-61958211 | None:intergenic | 30.0% | |
| ATATGACTAGAATCTCATTC+TGG | - | chr7.3:61955142-61955161 | None:intergenic | 30.0% | |
| CAGAGATGATAACTTTGATT+AGG | - | chr7.3:61957877-61957896 | None:intergenic | 30.0% | |
| GAAGTTGCATGAAAATATTG+GGG | + | chr7.3:61959693-61959712 | MS.gene037250:CDS | 30.0% | |
| GATTGTTGAGTTCAATAACA+AGG | - | chr7.3:61953908-61953927 | None:intergenic | 30.0% | |
| GGTTAGATGTATTCAATTGT+AGG | + | chr7.3:61956795-61956814 | MS.gene037250:intron | 30.0% | |
| TAGTTTACTTGCAATCCTAT+TGG | + | chr7.3:61957394-61957413 | MS.gene037250:intron | 30.0% | |
| TCTCAATAAATCCAGATCTT+TGG | + | chr7.3:61954018-61954037 | MS.gene037250:intron | 30.0% | |
| TGACTATCATGTACAAAAGA+AGG | - | chr7.3:61957631-61957650 | None:intergenic | 30.0% | |
| TGAGACAAAAGAGAATAACA+TGG | - | chr7.3:61958222-61958241 | None:intergenic | 30.0% | |
| TGGACAAAAGAAAAGTAGAT+TGG | - | chr7.3:61953976-61953995 | None:intergenic | 30.0% | |
| TTATGCTTCATAGATTCACA+GGG | - | chr7.3:61954465-61954484 | None:intergenic | 30.0% | |
| TTATGGATTTGAATTCGCTA+TGG | + | chr7.3:61956770-61956789 | MS.gene037250:intron | 30.0% | |
| TTCTATCATGAAAGTCAGAT+TGG | - | chr7.3:61954664-61954683 | None:intergenic | 30.0% | |
| TTTATGCTTCATAGATTCAC+AGG | - | chr7.3:61954466-61954485 | None:intergenic | 30.0% | |
| ! | AAGTAGATTGGTAATAACCT+TGG | - | chr7.3:61953964-61953983 | None:intergenic | 30.0% |
| ! | CAGATAGTGATAATTTTTCC+AGG | + | chr7.3:61956210-61956229 | MS.gene037250:intron | 30.0% |
| ! | CATAATAAAGGTGCAAGTTT+CGG | - | chr7.3:61955488-61955507 | None:intergenic | 30.0% |
| ! | GAATTATCTCACTTCTAAGA+AGG | - | chr7.3:61957683-61957702 | None:intergenic | 30.0% |
| ! | TGTATGGGTCTTAATTTTAG+TGG | + | chr7.3:61955687-61955706 | MS.gene037250:intron | 30.0% |
| !! | CTCTAAGAGTATTACAAACA+AGG | - | chr7.3:61955623-61955642 | None:intergenic | 30.0% |
| !!! | AAGTGAGACTTTTGAAATAG+TGG | - | chr7.3:61959298-61959317 | None:intergenic | 30.0% |
| !!! | AGTAGTTCAAGTTTTGAACA+TGG | + | chr7.3:61958143-61958162 | MS.gene037250:CDS | 30.0% |
| !!! | TCAAGTTTTGAACATGGTAT+TGG | + | chr7.3:61958149-61958168 | MS.gene037250:CDS | 30.0% |
| AAAGTGAGTGTCCAACAAAA+AGG | + | chr7.3:61958626-61958645 | MS.gene037250:intron | 35.0% | |
| ATCAAAGTTATCATCTCTGC+AGG | + | chr7.3:61957878-61957897 | MS.gene037250:intron | 35.0% | |
| ATGTGACTAAGTCTACTGAA+AGG | - | chr7.3:61955059-61955078 | None:intergenic | 35.0% | |
| CAAGCCTTAAATGCTCAAAT+TGG | - | chr7.3:61956957-61956976 | None:intergenic | 35.0% | |
| CGAAACTTGCACCTTTATTA+TGG | + | chr7.3:61955486-61955505 | MS.gene037250:CDS | 35.0% | |
| CGCTTTACATGTTCTCTTAA+AGG | + | chr7.3:61954872-61954891 | MS.gene037250:intron | 35.0% | |
| GTTCATTCTTTAGTGTATCG+TGG | + | chr7.3:61954227-61954246 | MS.gene037250:intron | 35.0% | |
| GTTCTTTGCTTTAGTACATC+TGG | + | chr7.3:61955586-61955605 | MS.gene037250:intron | 35.0% | |
| TAAAGAAGTCTAGTGTGAAC+AGG | + | chr7.3:61959126-61959145 | MS.gene037250:intron | 35.0% | |
| TAGATAATTCCTCGAAGAGT+TGG | - | chr7.3:61954966-61954985 | None:intergenic | 35.0% | |
| TAGCCCAATTTGAGCATTTA+AGG | + | chr7.3:61956950-61956969 | MS.gene037250:CDS | 35.0% | |
| TGAAACTTCTTAACCAACCT+AGG | - | chr7.3:61958249-61958268 | None:intergenic | 35.0% | |
| TGTGACTAAGTCTACTGAAA+GGG | - | chr7.3:61955058-61955077 | None:intergenic | 35.0% | |
| TTCAGGAAGATGAAACAACT+TGG | + | chr7.3:61959659-61959678 | MS.gene037250:intron | 35.0% | |
| TTTGTGATATGCAAGTGAGA+TGG | - | chr7.3:61954818-61954837 | None:intergenic | 35.0% | |
| ! | AACATGGTATTGGAAAGTGT+TGG | + | chr7.3:61958159-61958178 | MS.gene037250:CDS | 35.0% |
| ! | AGTGCTCTGAATAAGAGTTA+TGG | + | chr7.3:61956753-61956772 | MS.gene037250:intron | 35.0% |
| ! | CATGTTTTCTTTACAGTGTG+TGG | + | chr7.3:61956496-61956515 | MS.gene037250:intron | 35.0% |
| ! | CTTTTGTACATGATAGTCAC+AGG | + | chr7.3:61957632-61957651 | MS.gene037250:intron | 35.0% |
| ! | TTGACAGTTTTCAGCATGTT+TGG | - | chr7.3:61958372-61958391 | None:intergenic | 35.0% |
| ! | TTGCTTAGTTCTCGATAATG+TGG | + | chr7.3:61955399-61955418 | MS.gene037250:intron | 35.0% |
| !! | TGACACCAAACTTGTTAAAG+AGG | - | chr7.3:61958590-61958609 | None:intergenic | 35.0% |
| !!! | AGAGCATTTTCTCTAAGATC+AGG | - | chr7.3:61953930-61953949 | None:intergenic | 35.0% |
| AAACTTACCAAGAGCCCAAT+AGG | - | chr7.3:61957412-61957431 | None:intergenic | 40.0% | |
| AAGATGAAACAACTTGGAGC+TGG | + | chr7.3:61959665-61959684 | MS.gene037250:CDS | 40.0% | |
| ACATGTAATCCAACTCTTCG+AGG | + | chr7.3:61954954-61954973 | MS.gene037250:intron | 40.0% | |
| AGATGAAACAACTTGGAGCT+GGG | + | chr7.3:61959666-61959685 | MS.gene037250:CDS | 40.0% | |
| AGATTCAACAGCGGAATAGT+AGG | - | chr7.3:61956253-61956272 | None:intergenic | 40.0% | |
| GAATAAGTTCAAGTCTCCTC+AGG | + | chr7.3:61956079-61956098 | MS.gene037250:intron | 40.0% | |
| GGATTACATGTGTGTGTTCA+GGG | - | chr7.3:61954945-61954964 | None:intergenic | 40.0% | |
| GGGCTTGCAATGCATTAAAA+AGG | + | chr7.3:61958340-61958359 | MS.gene037250:intron | 40.0% | |
| GTGACTAAGTCTACTGAAAG+GGG | - | chr7.3:61955057-61955076 | None:intergenic | 40.0% | |
| TCACAACTTCTCCAAAGATC+TGG | - | chr7.3:61954032-61954051 | None:intergenic | 40.0% | |
| TGAAAATATTGGGGTGAACC+AGG | + | chr7.3:61959702-61959721 | MS.gene037250:CDS | 40.0% | |
| TGGATTACATGTGTGTGTTC+AGG | - | chr7.3:61954946-61954965 | None:intergenic | 40.0% | |
| TTCTTAAGTTTGAAGGGTCG+TGG | - | chr7.3:61959450-61959469 | None:intergenic | 40.0% | |
| TTTGTCTCAACATCCTAGGT+TGG | + | chr7.3:61958233-61958252 | MS.gene037250:intron | 40.0% | |
| ! | CTCTTTTGTCTCAACATCCT+AGG | + | chr7.3:61958229-61958248 | MS.gene037250:CDS | 40.0% |
| ! | TTCAATAACAAGGCGTTCCA+TGG | - | chr7.3:61953898-61953917 | None:intergenic | 40.0% |
| !! | AACAAGAAGTACTTACGCGA+AGG | - | chr7.3:61958407-61958426 | None:intergenic | 40.0% |
| !! | ACATGAGAGAAAAGTGCTAG+AGG | - | chr7.3:61956481-61956500 | None:intergenic | 40.0% |
| !! | CAAGTTTGGTGTCACACTTA+TGG | + | chr7.3:61958596-61958615 | MS.gene037250:intron | 40.0% |
| !! | CATTTAAGGCTTGCTAGTCT+TGG | + | chr7.3:61956964-61956983 | MS.gene037250:CDS | 40.0% |
| !! | CTGCACTATCACACTAGTTT+TGG | + | chr7.3:61954119-61954138 | MS.gene037250:intron | 40.0% |
| !! | GGTGAGGATTTTGAGTCTAT+TGG | + | chr7.3:61959410-61959429 | MS.gene037250:intron | 40.0% |
| AACTCGAGTGTGCAATGTTC+TGG | + | chr7.3:61956288-61956307 | MS.gene037250:CDS | 45.0% | |
| GATTGGGATGAAGCAGTTAG+AGG | - | chr7.3:61953849-61953868 | None:intergenic | 45.0% | |
| GCCTGAGTAAGATTCAACAG+CGG | - | chr7.3:61956262-61956281 | None:intergenic | 45.0% | |
| GGATTTGAATTCGCTATGGC+TGG | + | chr7.3:61956774-61956793 | MS.gene037250:intron | 45.0% | |
| GGCGAAAAACACAACAGTAG+TGG | + | chr7.3:61955734-61955753 | MS.gene037250:intron | 45.0% | |
| TAAGTTCAAGTCTCCTCAGG+CGG | + | chr7.3:61956082-61956101 | MS.gene037250:intron | 45.0% | |
| TCCGCTGTTGAATCTTACTC+AGG | + | chr7.3:61956258-61956277 | MS.gene037250:CDS | 45.0% | |
| TCTTGGAGTCATTGGTGCAT+TGG | + | chr7.3:61956981-61957000 | MS.gene037250:CDS | 45.0% | |
| TTGCAATCCTATTGGGCTCT+TGG | + | chr7.3:61957402-61957421 | MS.gene037250:intron | 45.0% | |
| ! | AGTCATTGGTGCATTGGTGA+AGG | + | chr7.3:61956987-61957006 | MS.gene037250:CDS | 45.0% |
| ! | TTGTGCTGTGGTGCTAGATT+GGG | - | chr7.3:61953865-61953884 | None:intergenic | 45.0% |
| ! | TTTGTGCTGTGGTGCTAGAT+TGG | - | chr7.3:61953866-61953885 | None:intergenic | 45.0% |
| !! | CTTGCTAGTCTTGGAGTCAT+TGG | + | chr7.3:61956973-61956992 | MS.gene037250:CDS | 45.0% |
| !!! | TGTCATTTTACAACCGCCTG+AGG | - | chr7.3:61956098-61956117 | None:intergenic | 45.0% |
| !!! | ATTTTATTGTTTTTATTTTT+GGG | + | chr7.3:61954155-61954174 | MS.gene037250:intron | 5.0% |
| !!! | TATTTTATTGTTTTTATTTT+TGG | + | chr7.3:61954154-61954173 | MS.gene037250:intron | 5.0% |
| AACCAGGTTCCCTTAGTACC+AGG | + | chr7.3:61959718-61959737 | MS.gene037250:CDS | 50.0% | |
| ACCACTGAGCTACATCCTCT+TGG | - | chr7.3:61956033-61956052 | None:intergenic | 50.0% | |
| AGCACAAAGCATGGCATCCA+TGG | + | chr7.3:61953878-61953897 | MS.gene037250:CDS | 50.0% | |
| ATTCCCTCCACCTGGTACTA+AGG | - | chr7.3:61959731-61959750 | None:intergenic | 50.0% | |
| CAGGTGGAGGGAATCAATGA+TGG | + | chr7.3:61959737-61959756 | MS.gene037250:CDS | 50.0% | |
| CTAACTCGCTTGTCGTTCGA+AGG | - | chr7.3:61956933-61956952 | None:intergenic | 50.0% | |
| TAGCACCACAGCACAAAGCA+TGG | + | chr7.3:61953869-61953888 | MS.gene037250:CDS | 50.0% | |
| TCCAAGAGGATGTAGCTCAG+TGG | + | chr7.3:61956029-61956048 | MS.gene037250:intron | 50.0% | |
| TCGCTTGTCGTTCGAAGGAA+TGG | - | chr7.3:61956928-61956947 | None:intergenic | 50.0% | |
| TGCCTACGCAGCATGGAAAT+CGG | + | chr7.3:61957708-61957727 | MS.gene037250:CDS | 50.0% | |
| TGCTCTTCGTGTTCTCTCCA+AGG | + | chr7.3:61953944-61953963 | MS.gene037250:CDS | 50.0% | |
| TTCCCTCCACCTGGTACTAA+GGG | - | chr7.3:61959730-61959749 | None:intergenic | 50.0% | |
| TTCCCTTAGTACCAGGTGGA+GGG | + | chr7.3:61959725-61959744 | MS.gene037250:CDS | 50.0% | |
| CACCTGGTACTAAGGGAACC+TGG | - | chr7.3:61959723-61959742 | None:intergenic | 55.0% | |
| CAGGTTCCCTTAGTACCAGG+TGG | + | chr7.3:61959721-61959740 | MS.gene037250:CDS | 55.0% | |
| GGATGCCATGCTTTGTGCTG+TGG | - | chr7.3:61953877-61953896 | None:intergenic | 55.0% | |
| GTTCCCTTAGTACCAGGTGG+AGG | + | chr7.3:61959724-61959743 | MS.gene037250:CDS | 55.0% | |
| TCCACTATGCCTACGCAGCA+TGG | + | chr7.3:61957701-61957720 | MS.gene037250:CDS | 55.0% | |
| TCCATGCTGCGTAGGCATAG+TGG | - | chr7.3:61957705-61957724 | None:intergenic | 55.0% | |
| !! | TGCCGATTTCCATGCTGCGT+AGG | - | chr7.3:61957713-61957732 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 61953819 | 61959756 | 61953819 | ID=MS.gene037250 |
| chr7.3 | mRNA | 61953819 | 61959756 | 61953819 | ID=MS.gene037250.t1;Parent=MS.gene037250 |
| chr7.3 | exon | 61953819 | 61953965 | 61953819 | ID=MS.gene037250.t1.exon1;Parent=MS.gene037250.t1 |
| chr7.3 | CDS | 61953819 | 61953965 | 61953819 | ID=cds.MS.gene037250.t1;Parent=MS.gene037250.t1 |
| chr7.3 | exon | 61955470 | 61955541 | 61955470 | ID=MS.gene037250.t1.exon2;Parent=MS.gene037250.t1 |
| chr7.3 | CDS | 61955470 | 61955541 | 61955470 | ID=cds.MS.gene037250.t1;Parent=MS.gene037250.t1 |
| chr7.3 | exon | 61956232 | 61956321 | 61956232 | ID=MS.gene037250.t1.exon3;Parent=MS.gene037250.t1 |
| chr7.3 | CDS | 61956232 | 61956321 | 61956232 | ID=cds.MS.gene037250.t1;Parent=MS.gene037250.t1 |
| chr7.3 | exon | 61956512 | 61956554 | 61956512 | ID=MS.gene037250.t1.exon4;Parent=MS.gene037250.t1 |
| chr7.3 | CDS | 61956512 | 61956554 | 61956512 | ID=cds.MS.gene037250.t1;Parent=MS.gene037250.t1 |
| chr7.3 | exon | 61956902 | 61957008 | 61956902 | ID=MS.gene037250.t1.exon5;Parent=MS.gene037250.t1 |
| chr7.3 | CDS | 61956902 | 61957008 | 61956902 | ID=cds.MS.gene037250.t1;Parent=MS.gene037250.t1 |
| chr7.3 | exon | 61957654 | 61957749 | 61957654 | ID=MS.gene037250.t1.exon6;Parent=MS.gene037250.t1 |
| chr7.3 | CDS | 61957654 | 61957749 | 61957654 | ID=cds.MS.gene037250.t1;Parent=MS.gene037250.t1 |
| chr7.3 | exon | 61958060 | 61958250 | 61958060 | ID=MS.gene037250.t1.exon7;Parent=MS.gene037250.t1 |
| chr7.3 | CDS | 61958060 | 61958250 | 61958060 | ID=cds.MS.gene037250.t1;Parent=MS.gene037250.t1 |
| chr7.3 | exon | 61958341 | 61958410 | 61958341 | ID=MS.gene037250.t1.exon8;Parent=MS.gene037250.t1 |
| chr7.3 | CDS | 61958341 | 61958410 | 61958341 | ID=cds.MS.gene037250.t1;Parent=MS.gene037250.t1 |
| chr7.3 | exon | 61959664 | 61959756 | 61959664 | ID=MS.gene037250.t1.exon9;Parent=MS.gene037250.t1 |
| chr7.3 | CDS | 61959664 | 61959756 | 61959664 | ID=cds.MS.gene037250.t1;Parent=MS.gene037250.t1 |
| Gene Sequence |
| Protein sequence |
