AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037254

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037254.t1 MTR_5g078140 79.310 87 18 0 2 88 1 87 4.05e-46 150
MS.gene037254.t1 MTR_3g065440 79.310 87 18 0 2 88 1 87 5.36e-46 149
MS.gene037254.t1 MTR_4g102380 77.011 87 20 0 2 88 1 87 4.39e-44 143
MS.gene037254.t1 MTR_7g076740 70.455 88 25 1 2 88 1 88 1.97e-42 140
MS.gene037254.t1 MTR_8g031360 74.157 89 21 2 2 88 1 89 5.52e-42 139
MS.gene037254.t1 MTR_6g012690 68.966 87 27 0 2 88 1 87 1.43e-40 136
MS.gene037254.t1 MTR_3g074520 66.667 87 29 0 2 88 1 87 3.70e-40 135
MS.gene037254.t1 MTR_4g478180 70.115 87 26 0 2 88 2 88 4.40e-40 135
MS.gene037254.t1 MTR_7g096930 67.816 87 28 0 2 88 1 87 4.55e-40 133
MS.gene037254.t1 MTR_7g111290 67.816 87 28 0 2 88 1 87 7.66e-40 135
MS.gene037254.t1 MTR_1g076150 67.816 87 28 0 2 88 1 87 2.18e-39 131
MS.gene037254.t1 MTR_1g085040 66.667 87 29 0 2 88 1 87 2.83e-39 133
MS.gene037254.t1 MTR_4g091490 67.045 88 28 1 2 88 1 88 3.87e-39 132
MS.gene037254.t1 MTR_7g011170 67.816 87 28 0 2 88 1 87 4.12e-39 131
MS.gene037254.t1 MTR_1g100653 67.816 87 28 0 2 88 1 87 7.86e-39 130
MS.gene037254.t1 MTR_4g082290 67.816 87 28 0 2 88 1 87 8.85e-39 133
MS.gene037254.t1 MTR_3g097450 67.816 87 28 0 2 88 1 87 4.79e-38 128
MS.gene037254.t1 MTR_2g011660 65.909 88 29 1 2 88 1 88 6.19e-38 129
MS.gene037254.t1 MTR_4g073420 65.517 87 30 0 2 88 1 87 1.58e-37 127
MS.gene037254.t1 MTR_8g095390 63.218 87 32 0 2 88 1 87 1.72e-37 127
MS.gene037254.t1 MTR_2g099740 65.517 87 30 0 2 88 1 87 1.78e-37 129
MS.gene037254.t1 MTR_1g043080 64.368 87 31 0 2 88 1 87 2.02e-37 125
MS.gene037254.t1 MTR_4g105130 65.517 87 30 0 2 88 1 87 2.30e-37 128
MS.gene037254.t1 MTR_2g067420 66.279 86 29 0 3 88 4 89 4.87e-37 127
MS.gene037254.t1 MTR_2g089620 67.816 87 28 0 2 88 1 87 5.99e-37 126
MS.gene037254.t1 MTR_3g077110 65.517 87 30 0 2 88 1 87 8.14e-37 126
MS.gene037254.t1 MTR_7g115650 59.770 87 35 0 2 88 1 87 3.76e-36 121
MS.gene037254.t1 MTR_4g082230 64.368 87 31 0 2 88 1 87 6.71e-36 125
MS.gene037254.t1 MTR_3g461490 60.920 87 34 0 2 88 1 87 1.16e-35 123
MS.gene037254.t1 MTR_0008s0470 56.818 88 37 1 2 88 1 88 1.19e-35 122
MS.gene037254.t1 MTR_7g110830 64.368 87 31 0 2 88 1 87 1.44e-35 124
MS.gene037254.t1 MTR_2g034790 65.517 87 30 0 2 88 1 87 1.51e-35 123
MS.gene037254.t1 MTR_8g017440 62.069 87 33 0 2 88 1 87 2.98e-35 122
MS.gene037254.t1 MTR_7g117730 63.218 87 32 0 2 88 1 87 4.36e-35 120
MS.gene037254.t1 MTR_0251s0050 57.955 88 36 1 2 88 1 88 4.70e-35 120
MS.gene037254.t1 MTR_1g043050 63.218 87 32 0 2 88 1 87 4.84e-35 119
MS.gene037254.t1 MTR_0008s0390 57.955 88 36 1 2 88 1 88 4.96e-35 120
MS.gene037254.t1 MTR_8g017540 62.069 87 33 0 2 88 47 133 6.30e-35 122
MS.gene037254.t1 MTR_5g029840 63.218 87 32 0 2 88 1 87 7.66e-35 121
MS.gene037254.t1 MTR_7g010210 63.218 87 32 0 2 88 1 87 7.91e-35 120
MS.gene037254.t1 MTR_0140s0030 60.920 87 34 0 2 88 2 88 1.01e-34 120
MS.gene037254.t1 MTR_0489s0020 60.920 87 34 0 2 88 2 88 1.01e-34 120
MS.gene037254.t1 MTR_3g083540 65.060 83 29 0 6 88 34 116 1.01e-34 120
MS.gene037254.t1 MTR_4g121460 64.368 87 31 0 2 88 1 87 1.05e-34 120
MS.gene037254.t1 MTR_8g017500 60.920 87 34 0 2 88 1 87 1.05e-34 121
MS.gene037254.t1 MTR_2g089450 60.920 87 34 0 2 88 1 87 1.21e-34 118
MS.gene037254.t1 MTR_1g085640 63.218 87 32 0 2 88 1 87 1.22e-34 121
MS.gene037254.t1 MTR_6g012180 62.069 87 33 0 2 88 1 87 1.40e-34 120
MS.gene037254.t1 MTR_8g027345 62.069 87 33 0 2 88 1 87 1.59e-34 119
MS.gene037254.t1 MTR_7g087130 63.218 87 32 0 2 88 1 87 4.46e-34 119
MS.gene037254.t1 MTR_7g010210 63.218 87 32 0 2 88 1 87 5.05e-34 117
MS.gene037254.t1 MTR_6g009430 60.920 87 34 0 2 88 1 87 6.93e-34 119
MS.gene037254.t1 MTR_5g079670 61.176 85 33 0 4 88 2 86 1.13e-33 115
MS.gene037254.t1 MTR_5g010020 58.621 87 36 0 2 88 1 87 1.53e-33 117
MS.gene037254.t1 MTR_1g112760 64.706 85 30 0 4 88 4 88 1.58e-33 115
MS.gene037254.t1 MTR_2g089420 58.621 87 35 1 2 88 1 86 1.61e-33 119
MS.gene037254.t1 MTR_4g125520 62.069 87 33 0 2 88 1 87 2.43e-33 116
MS.gene037254.t1 MTR_3g039990 59.770 87 35 0 2 88 2 88 3.18e-33 116
MS.gene037254.t1 MTR_8g098860 58.621 87 36 0 2 88 1 87 4.46e-33 116
MS.gene037254.t1 MTR_5g007370 60.920 87 34 0 2 88 1 87 6.29e-33 115
MS.gene037254.t1 MTR_8g017390 60.227 88 34 1 2 88 1 88 1.80e-32 117
MS.gene037254.t1 MTR_4g065017 64.474 76 27 0 13 88 17 92 2.61e-32 114
MS.gene037254.t1 MTR_0063s0090 57.471 87 37 0 2 88 1 87 1.61e-31 110
MS.gene037254.t1 MTR_8g017340 60.227 88 34 1 2 88 1 88 1.62e-31 114
MS.gene037254.t1 MTR_4g485530 60.465 86 33 1 4 88 2 87 1.63e-31 109
MS.gene037254.t1 MTR_2g064160 62.195 82 31 0 7 88 5 86 2.53e-31 111
MS.gene037254.t1 MTR_8g017350 60.227 88 34 1 2 88 1 88 2.73e-31 114
MS.gene037254.t1 MTR_1g017000 55.682 88 38 1 2 88 1 88 2.99e-31 110
MS.gene037254.t1 MTR_7g109320 64.368 87 31 0 2 88 1 87 4.53e-31 111
MS.gene037254.t1 MTR_5g014990 55.682 88 38 1 2 88 1 88 4.68e-31 110
MS.gene037254.t1 MTR_5g007300 58.621 87 36 0 2 88 53 139 1.12e-30 105
MS.gene037254.t1 MTR_1g017140 54.545 88 39 1 2 88 1 88 2.66e-30 109
MS.gene037254.t1 MTR_2g097910 61.842 76 29 0 13 88 20 95 2.83e-30 108
MS.gene037254.t1 MTR_3g103570 54.545 88 39 1 2 88 1 88 4.64e-30 108
MS.gene037254.t1 MTR_0008s0280 55.172 87 39 0 2 88 1 87 5.53e-30 106
MS.gene037254.t1 MTR_4g097570 55.682 88 38 1 2 88 1 88 5.83e-30 107
MS.gene037254.t1 MTR_7g102110 53.409 88 40 1 2 88 1 88 1.43e-29 106
MS.gene037254.t1 MTR_4g057635 53.409 88 40 1 2 88 1 88 1.74e-29 107
MS.gene037254.t1 MTR_4g128670 54.545 88 39 1 2 88 1 88 2.02e-29 107
MS.gene037254.t1 MTR_2g095520 53.409 88 40 1 2 88 1 88 2.54e-29 106
MS.gene037254.t1 MTR_4g097570 55.056 89 38 2 2 88 1 89 5.59e-29 105
MS.gene037254.t1 MTR_1g100667 59.091 88 35 1 2 88 1 88 8.58e-29 104
MS.gene037254.t1 MTR_5g042030 57.692 78 33 0 11 88 5 82 2.43e-28 103
MS.gene037254.t1 MTR_8g042410 61.538 78 30 0 11 88 35 112 3.30e-28 105
MS.gene037254.t1 MTR_6g055910 58.228 79 33 0 10 88 11 89 5.80e-28 102
MS.gene037254.t1 MTR_6g090405 55.682 88 38 1 2 88 1 88 8.58e-28 101
MS.gene037254.t1 MTR_3g028740 57.500 80 34 0 9 88 18 97 1.37e-26 99.8
MS.gene037254.t1 MTR_1g110460 55.263 76 34 0 13 88 26 101 1.95e-26 99.0
MS.gene037254.t1 MTR_6g006030 50.562 89 42 1 2 88 1 89 4.59e-26 95.5
MS.gene037254.t1 MTR_3g052450 52.500 80 38 0 9 88 36 115 8.22e-26 99.4
MS.gene037254.t1 MTR_7g035075 56.579 76 33 0 13 88 14 89 8.30e-26 95.1
MS.gene037254.t1 MTR_3g052430 53.947 76 35 0 13 88 41 116 3.36e-25 97.4
MS.gene037254.t1 MTR_3g011610 56.410 78 34 0 11 88 35 112 5.45e-25 97.1
MS.gene037254.t1 MTR_1g073170 57.333 75 32 0 14 88 21 95 1.03e-24 93.2
MS.gene037254.t1 MTR_1g045610 57.333 75 32 0 14 88 22 96 2.69e-24 92.0
MS.gene037254.t1 MTR_4g100720 55.696 79 35 0 10 88 10 88 2.94e-24 90.1
MS.gene037254.t1 MTR_2g033170 53.750 80 37 0 9 88 20 99 3.22e-24 93.2
MS.gene037254.t1 MTR_1g021230 55.263 76 34 0 13 88 57 132 3.87e-24 94.4
MS.gene037254.t1 MTR_1g086510 52.500 80 38 0 9 88 17 96 5.05e-24 91.7
MS.gene037254.t1 MTR_2g088170 56.962 79 34 0 10 88 26 104 2.09e-23 92.4
MS.gene037254.t1 MTR_4g063100 52.000 75 36 0 14 88 8 82 5.69e-23 88.6
MS.gene037254.t1 MTR_1g086530 50.000 80 40 0 9 88 29 108 6.65e-23 89.0
MS.gene037254.t1 MTR_5g079120 52.500 80 38 0 9 88 57 136 4.63e-22 87.0
MS.gene037254.t1 MTR_5g062790 48.052 77 40 0 11 87 7 83 5.56e-22 87.0
MS.gene037254.t1 MTR_0247s0040 46.914 81 43 0 8 88 2 82 7.79e-22 84.0
MS.gene037254.t1 MTR_0193s0090 46.914 81 43 0 8 88 2 82 9.81e-22 84.3
MS.gene037254.t1 MTR_1g083630 48.101 79 41 0 9 87 8 86 1.79e-21 87.0
MS.gene037254.t1 MTR_2g096380 50.000 76 38 0 13 88 6 81 3.02e-21 84.0
MS.gene037254.t1 MTR_5g079220 49.383 81 41 0 8 88 16 96 3.43e-21 84.3
MS.gene037254.t1 MTR_0197s0010 58.333 72 30 0 17 88 5 76 3.44e-21 83.6
MS.gene037254.t1 MTR_7g111290 77.778 45 10 0 44 88 1 45 4.18e-21 85.1
MS.gene037254.t1 MTR_5g088080 45.946 74 40 0 14 87 13 86 5.57e-21 83.6
MS.gene037254.t1 MTR_5g088150 45.946 74 40 0 14 87 13 86 5.57e-21 83.6
MS.gene037254.t1 MTR_5g488210 45.946 74 40 0 14 87 13 86 5.57e-21 83.6
MS.gene037254.t1 MTR_5g088640 45.946 74 40 0 14 87 13 86 6.41e-21 83.6
MS.gene037254.t1 MTR_4g123040 51.250 80 39 0 9 88 20 99 6.96e-21 84.3
MS.gene037254.t1 MTR_7g017260 50.000 82 39 1 9 88 21 102 7.27e-21 83.6
MS.gene037254.t1 MTR_5g078860 53.247 77 36 0 12 88 6 82 8.77e-21 84.0
MS.gene037254.t1 MTR_1g062940 51.316 76 37 0 13 88 6 81 1.13e-20 82.0
MS.gene037254.t1 MTR_5g078800 53.247 77 36 0 12 88 6 82 1.54e-20 82.4
MS.gene037254.t1 MTR_8g060940 51.948 77 37 0 12 88 6 82 1.55e-20 82.0
MS.gene037254.t1 MTR_5g078950 53.247 77 36 0 12 88 6 82 1.90e-20 82.4
MS.gene037254.t1 MTR_5g488170 44.156 77 43 0 11 87 10 86 3.44e-20 81.3
MS.gene037254.t1 MTR_5g079290 51.948 77 37 0 12 88 16 92 4.11e-20 81.3
MS.gene037254.t1 MTR_5g078910 52.632 76 36 0 13 88 7 82 6.24e-20 81.3
MS.gene037254.t1 MTR_8g020490 50.000 76 38 0 13 88 8 83 8.39e-20 80.5
MS.gene037254.t1 MTR_0001s0360 51.948 77 37 0 12 88 6 82 3.08e-19 79.0
MS.gene037254.t1 MTR_5g078930 49.398 83 41 1 7 88 2 84 8.56e-19 77.0
MS.gene037254.t1 MTR_0023s0210 49.351 77 39 0 12 88 6 82 1.37e-18 73.2
MS.gene037254.t1 MTR_5g016510 45.333 75 38 2 15 88 5 77 1.78e-16 72.4
MS.gene037254.t1 MTR_3g463400 41.573 89 48 3 2 88 119 205 2.21e-16 72.4
MS.gene037254.t1 MTR_6g015455 45.333 75 38 2 15 88 5 77 2.94e-16 72.4
MS.gene037254.t1 MTR_5g088610 41.558 77 45 0 11 87 7 83 3.47e-16 71.6
MS.gene037254.t1 MTR_8g006470 43.210 81 45 1 9 88 6 86 5.62e-16 70.5
MS.gene037254.t1 MTR_4g128190 44.737 76 29 1 12 87 10 72 6.92e-16 69.7
MS.gene037254.t1 MTR_4g029540 44.156 77 42 1 13 88 10 86 9.30e-16 70.1
MS.gene037254.t1 MTR_5g049190 42.222 90 41 3 8 88 4 91 1.17e-15 69.3
MS.gene037254.t1 MTR_5g070020 44.156 77 40 2 13 88 120 194 1.70e-15 69.7
MS.gene037254.t1 MTR_3g045430 42.045 88 50 1 2 88 1 88 3.89e-15 68.6
MS.gene037254.t1 MTR_8g017480 55.769 52 23 0 2 53 1 52 5.49e-15 63.2
MS.gene037254.t1 MTR_4g105660 44.000 75 39 2 15 88 180 252 1.10e-14 67.8
MS.gene037254.t1 MTR_3g077650 38.750 80 46 2 10 88 176 253 1.24e-14 67.4
MS.gene037254.t1 MTR_6g055910 66.667 45 15 0 44 88 16 60 3.10e-14 65.5
MS.gene037254.t1 MTR_5g041570 45.333 75 38 2 15 88 134 206 7.38e-14 65.5
MS.gene037254.t1 MTR_4g094982 40.000 75 42 2 15 88 5 77 7.79e-14 64.7
MS.gene037254.t1 MTR_4g088015 41.333 75 41 2 15 88 221 293 1.30e-13 64.7
MS.gene037254.t1 MTR_4g019370 44.000 75 39 2 15 88 38 110 1.55e-13 64.3
MS.gene037254.t1 MTR_4g063100 60.000 45 18 0 44 88 9 53 2.08e-13 63.2
MS.gene037254.t1 MTR_7g061330 42.857 77 41 2 13 88 111 185 3.06e-13 63.5
MS.gene037254.t1 MTR_7g461410 42.857 77 41 2 13 88 111 185 3.06e-13 63.5
MS.gene037254.t1 MTR_3g101290 38.272 81 47 2 9 88 31 109 3.65e-13 62.4
MS.gene037254.t1 MTR_7g451170 42.667 75 40 2 15 88 191 263 4.44e-13 63.2
MS.gene037254.t1 MTR_4g082040 42.667 75 40 2 15 88 105 177 4.93e-13 63.2
MS.gene037254.t1 MTR_7g061330 42.857 77 41 2 13 88 75 149 6.14e-13 62.8
MS.gene037254.t1 MTR_1g057980 39.474 76 45 1 13 88 78 152 6.64e-13 62.4
MS.gene037254.t1 MTR_6g027360 42.105 76 41 2 13 87 76 149 1.41e-12 61.6
MS.gene037254.t1 MTR_6g074860 45.333 75 38 2 15 88 4 76 2.20e-12 60.5
MS.gene037254.t1 MTR_1g085770 48.276 58 29 1 13 69 11 68 3.65e-12 60.5
MS.gene037254.t1 MTR_1g085880 48.276 58 29 1 13 69 11 68 3.89e-12 59.3
MS.gene037254.t1 MTR_6g027370 41.333 75 41 2 15 88 99 171 3.98e-12 60.5
MS.gene037254.t1 MTR_5g082910 41.975 81 41 3 9 88 16 91 4.33e-12 60.1
MS.gene037254.t1 MTR_7g035350 38.889 72 41 2 18 88 228 297 1.00e-11 59.3
MS.gene037254.t1 MTR_6g027340 42.254 71 38 2 18 87 19 87 1.33e-11 57.8
MS.gene037254.t1 MTR_7g037260 37.838 74 45 1 15 88 145 217 3.22e-11 57.8
MS.gene037254.t1 MTR_3g110028 37.662 77 45 2 13 88 83 157 3.66e-11 57.8
MS.gene037254.t1 MTR_2g096380 55.556 45 20 0 44 88 18 62 5.52e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037254.t1 AT5G14340 85.227 88 13 0 1 88 12 99 2.17e-54 170
MS.gene037254.t1 AT5G16600 79.310 87 18 0 2 88 1 87 2.23e-46 150
MS.gene037254.t1 AT1G66230 75.862 87 21 0 2 88 1 87 8.17e-45 145
MS.gene037254.t1 AT3G23250 72.414 87 24 0 2 88 1 87 1.45e-44 145
MS.gene037254.t1 AT3G61250 72.414 87 24 0 2 88 1 87 8.08e-43 141
MS.gene037254.t1 AT4G22680 73.563 87 23 0 2 88 1 87 9.21e-43 140
MS.gene037254.t1 AT4G12350 72.414 87 24 0 2 88 1 87 2.08e-41 137
MS.gene037254.t1 AT1G06180 70.115 87 26 0 2 88 1 87 2.02e-40 133
MS.gene037254.t1 AT4G28110 65.517 87 30 0 2 88 1 87 2.57e-40 134
MS.gene037254.t1 AT3G02940 67.816 87 28 0 2 88 1 87 3.25e-40 134
MS.gene037254.t1 AT1G16490 67.442 86 28 0 3 88 4 89 3.49e-40 133
MS.gene037254.t1 AT5G16770 67.816 87 28 0 2 88 1 87 3.64e-40 134
MS.gene037254.t1 AT5G16770 67.816 87 28 0 2 88 1 87 3.64e-40 134
MS.gene037254.t1 AT5G16770 67.816 87 28 0 2 88 1 87 6.33e-40 134
MS.gene037254.t1 AT5G16770 67.816 87 28 0 2 88 1 87 6.33e-40 134
MS.gene037254.t1 AT4G21440 66.667 87 29 0 2 88 1 87 6.65e-40 134
MS.gene037254.t1 AT3G02940 67.816 87 28 0 2 88 1 87 8.31e-40 134
MS.gene037254.t1 AT3G02940 67.816 87 28 0 2 88 1 87 8.31e-40 134
MS.gene037254.t1 AT3G01140 68.966 87 27 0 2 88 1 87 1.38e-39 134
MS.gene037254.t1 AT5G15310 67.816 87 28 0 2 88 1 87 1.53e-39 133
MS.gene037254.t1 AT5G15310 67.816 87 28 0 2 88 1 87 1.78e-39 132
MS.gene037254.t1 AT2G31180 68.966 87 27 0 2 88 1 87 6.19e-39 129
MS.gene037254.t1 AT1G79180 67.442 86 28 0 3 88 4 89 1.01e-38 130
MS.gene037254.t1 AT1G34670 64.368 87 31 0 2 88 1 87 1.07e-38 132
MS.gene037254.t1 AT4G09460 66.667 87 29 0 2 88 1 87 2.41e-38 127
MS.gene037254.t1 AT5G15310 67.816 87 28 0 2 88 1 87 2.61e-38 128
MS.gene037254.t1 AT5G26660 66.667 87 29 0 2 88 1 87 4.31e-38 130
MS.gene037254.t1 AT5G62320 67.742 93 23 1 3 88 3 95 7.12e-38 127
MS.gene037254.t1 AT5G10280 63.218 87 32 0 2 88 1 87 1.28e-37 128
MS.gene037254.t1 AT1G09540 65.517 87 30 0 2 88 1 87 2.15e-37 128
MS.gene037254.t1 AT4G38620 66.667 87 29 0 2 88 1 87 2.23e-37 126
MS.gene037254.t1 AT4G05100 64.773 88 30 1 2 88 1 88 3.11e-37 127
MS.gene037254.t1 AT4G17785 63.636 88 31 1 2 88 1 88 3.39e-37 127
MS.gene037254.t1 AT4G17785 63.636 88 31 1 2 88 1 88 3.64e-37 127
MS.gene037254.t1 AT1G56160 66.279 86 29 0 3 88 4 89 3.77e-37 126
MS.gene037254.t1 AT5G65230 63.218 87 32 0 2 88 1 87 4.28e-37 126
MS.gene037254.t1 AT3G12820 68.235 85 27 0 4 88 5 89 6.08e-37 124
MS.gene037254.t1 AT3G01140 68.675 83 26 0 6 88 48 130 6.65e-37 127
MS.gene037254.t1 AT2G16720 64.368 87 31 0 2 88 1 87 6.77e-37 125
MS.gene037254.t1 AT1G57560 63.218 87 32 0 2 88 1 87 9.43e-37 125
MS.gene037254.t1 AT5G49330 66.667 87 29 0 2 88 1 87 1.88e-36 125
MS.gene037254.t1 AT1G35515 62.069 87 33 0 2 88 1 87 2.24e-36 122
MS.gene037254.t1 AT2G47460 65.517 87 30 0 2 88 1 87 2.31e-36 125
MS.gene037254.t1 AT1G57560 63.218 87 32 0 2 88 1 87 3.08e-36 123
MS.gene037254.t1 AT1G22640 63.218 87 32 0 2 88 1 87 6.16e-36 122
MS.gene037254.t1 AT3G47600 63.218 87 32 0 2 88 1 87 6.47e-36 124
MS.gene037254.t1 AT3G13890 63.218 87 32 0 2 88 1 87 1.05e-35 124
MS.gene037254.t1 AT3G62610 63.953 86 31 0 2 87 1 86 1.56e-35 123
MS.gene037254.t1 AT5G62470 62.069 87 33 0 2 88 1 87 2.13e-35 123
MS.gene037254.t1 AT4G01680 64.368 87 31 0 2 88 1 87 2.23e-35 122
MS.gene037254.t1 AT4G34990 64.368 87 31 0 2 88 1 87 3.65e-35 120
MS.gene037254.t1 AT3G13540 67.470 83 27 0 6 88 16 98 7.90e-35 119
MS.gene037254.t1 AT1G08810 64.368 87 31 0 2 88 1 87 1.43e-34 119
MS.gene037254.t1 AT4G01680 64.368 87 31 0 2 88 1 87 1.60e-34 118
MS.gene037254.t1 AT5G56110 62.069 87 33 0 2 88 1 87 2.56e-34 119
MS.gene037254.t1 AT5G60890 58.621 87 36 0 2 88 1 87 3.18e-34 119
MS.gene037254.t1 AT1G74650 62.069 87 33 0 2 88 1 87 3.37e-34 119
MS.gene037254.t1 AT5G07690 59.770 87 35 0 2 88 1 87 4.65e-34 119
MS.gene037254.t1 AT5G62470 62.069 87 32 1 2 88 1 86 4.85e-34 119
MS.gene037254.t1 AT3G28910 63.218 87 32 0 2 88 1 87 5.03e-34 119
MS.gene037254.t1 AT5G61420 58.621 87 36 0 2 88 1 87 6.84e-34 119
MS.gene037254.t1 AT1G74080 60.920 87 34 0 2 88 1 87 1.68e-33 117
MS.gene037254.t1 AT3G28470 55.172 87 39 0 2 88 1 87 4.19e-33 116
MS.gene037254.t1 AT1G18570 61.364 88 33 1 2 88 1 88 9.39e-33 116
MS.gene037254.t1 AT3G13890 57.292 96 32 1 2 88 1 96 9.66e-33 116
MS.gene037254.t1 AT1G63910 57.471 87 37 0 2 88 1 87 1.78e-32 115
MS.gene037254.t1 AT3G12720 61.364 88 33 1 1 88 11 97 2.74e-32 114
MS.gene037254.t1 AT1G79180 48.739 119 28 1 3 88 4 122 3.51e-32 114
MS.gene037254.t1 AT4G01680 56.566 99 31 1 2 88 1 99 4.51e-32 114
MS.gene037254.t1 AT5G07700 57.471 87 37 0 2 88 1 87 4.67e-32 114
MS.gene037254.t1 AT5G07700 57.471 87 37 0 2 88 1 87 4.67e-32 114
MS.gene037254.t1 AT5G54230 59.770 87 35 0 2 88 1 87 8.79e-32 113
MS.gene037254.t1 AT5G65790 54.545 88 39 1 2 88 1 88 5.19e-31 112
MS.gene037254.t1 AT3G49690 55.682 88 38 1 2 88 1 88 5.38e-31 110
MS.gene037254.t1 AT1G18710 59.770 87 35 0 2 88 1 87 5.95e-31 109
MS.gene037254.t1 AT1G74430 59.770 87 35 0 2 88 1 87 6.58e-30 107
MS.gene037254.t1 AT4G37780 52.273 88 41 1 2 88 1 88 1.35e-29 107
MS.gene037254.t1 AT3G01530 61.842 76 29 0 13 88 25 100 2.95e-29 103
MS.gene037254.t1 AT5G12870 64.474 76 27 0 13 88 18 93 2.98e-29 105
MS.gene037254.t1 AT5G23000 56.180 89 36 2 2 88 1 88 6.23e-29 105
MS.gene037254.t1 AT2G36890 55.056 89 39 1 1 88 41 129 8.77e-29 105
MS.gene037254.t1 AT2G36890 55.682 88 38 1 2 88 1 88 8.93e-29 104
MS.gene037254.t1 AT5G57620 53.409 88 40 1 2 88 1 88 1.03e-28 105
MS.gene037254.t1 AT3G08500 60.000 80 32 0 9 88 26 105 2.22e-28 104
MS.gene037254.t1 AT5G52260 59.091 88 33 1 1 88 3 87 2.55e-27 100
MS.gene037254.t1 AT1G68320 57.895 76 32 0 13 88 19 94 3.81e-27 100
MS.gene037254.t1 AT2G32460 59.740 77 31 0 12 88 5 81 5.34e-27 102
MS.gene037254.t1 AT2G32460 59.740 77 31 0 12 88 17 93 5.35e-27 102
MS.gene037254.t1 AT5G55020 60.256 78 31 0 11 88 24 101 1.14e-26 101
MS.gene037254.t1 AT2G26960 54.430 79 36 0 10 88 17 95 5.18e-26 99.4
MS.gene037254.t1 AT5G40350 55.263 76 34 0 13 88 17 92 5.74e-26 95.5
MS.gene037254.t1 AT3G27920 56.000 75 33 0 14 88 15 89 6.39e-26 95.9
MS.gene037254.t1 AT3G27810 55.263 76 34 0 13 88 20 95 1.37e-25 95.1
MS.gene037254.t1 AT5G14750 57.333 75 32 0 14 88 17 91 2.68e-25 93.6
MS.gene037254.t1 AT5G06100 50.000 80 40 0 9 88 28 107 3.34e-25 97.1
MS.gene037254.t1 AT3G06490 57.500 80 34 0 9 88 15 94 3.56e-25 95.9
MS.gene037254.t1 AT1G25340 53.333 75 35 0 14 88 19 93 5.42e-25 94.7
MS.gene037254.t1 AT4G26930 55.128 78 35 0 11 88 17 94 6.67e-25 95.9
MS.gene037254.t1 AT5G06100 50.000 80 40 0 9 88 28 107 7.17e-25 96.7
MS.gene037254.t1 AT5G06100 50.000 80 40 0 9 88 28 107 7.17e-25 96.7
MS.gene037254.t1 AT5G06100 50.000 80 40 0 9 88 28 107 7.17e-25 96.7
MS.gene037254.t1 AT5G06100 50.000 80 40 0 9 88 28 107 7.17e-25 96.7
MS.gene037254.t1 AT3G11440 51.316 76 37 0 13 88 41 116 7.19e-25 96.3
MS.gene037254.t1 AT3G11440 51.316 76 37 0 13 88 41 116 7.64e-25 96.7
MS.gene037254.t1 AT3G11440 51.316 76 37 0 13 88 41 116 7.64e-25 96.7
MS.gene037254.t1 AT3G11440 51.316 76 37 0 13 88 41 116 7.64e-25 96.7
MS.gene037254.t1 AT3G24310 57.143 77 33 0 12 88 17 93 1.36e-24 93.2
MS.gene037254.t1 AT4G25560 57.333 75 32 0 14 88 11 85 1.57e-24 93.2
MS.gene037254.t1 AT4G13480 58.667 75 31 0 14 88 7 81 2.05e-24 92.8
MS.gene037254.t1 AT3G30210 54.545 77 35 0 12 88 26 102 2.38e-24 92.8
MS.gene037254.t1 AT5G40330 54.667 75 34 0 14 88 13 87 3.15e-24 91.3
MS.gene037254.t1 AT1G48000 52.564 78 37 0 11 88 30 107 1.29e-23 90.1
MS.gene037254.t1 AT2G47190 51.316 76 37 0 13 88 20 95 2.31e-22 87.4
MS.gene037254.t1 AT3G46130 53.247 77 36 0 12 88 8 84 3.84e-22 86.7
MS.gene037254.t1 AT5G59780 53.947 76 35 0 13 88 8 83 4.53e-22 85.9
MS.gene037254.t1 AT3G48920 53.333 75 35 0 14 88 19 93 5.48e-22 86.3
MS.gene037254.t1 AT5G49620 50.000 80 40 0 9 88 22 101 1.30e-21 86.3
MS.gene037254.t1 AT5G49620 50.000 80 40 0 9 88 22 101 1.35e-21 85.9
MS.gene037254.t1 AT5G35550 55.263 76 34 0 13 88 14 89 1.70e-21 85.1
MS.gene037254.t1 AT1G25340 49.333 75 33 1 14 88 19 88 7.00e-21 83.6
MS.gene037254.t1 AT1G25340 49.333 75 33 1 14 88 19 88 1.30e-20 83.6
MS.gene037254.t1 AT3G53200 53.947 76 35 0 13 88 9 84 1.24e-19 79.7
MS.gene037254.t1 AT5G26660 79.070 43 9 0 46 88 14 56 2.37e-19 80.1
MS.gene037254.t1 AT2G26950 44.304 79 44 0 10 88 13 91 4.52e-19 79.7
MS.gene037254.t1 AT5G52600 48.101 79 41 0 10 88 9 87 5.53e-19 77.4
MS.gene037254.t1 AT1G66380 53.247 77 36 0 12 88 7 83 2.86e-18 73.2
MS.gene037254.t1 AT1G66370 48.276 87 41 1 2 88 1 83 7.48e-18 75.1
MS.gene037254.t1 AT5G58850 46.753 77 38 2 13 88 103 177 1.05e-17 76.3
MS.gene037254.t1 AT1G66380 53.247 77 36 0 12 88 7 83 1.16e-17 72.4
MS.gene037254.t1 AT3G60460 45.455 77 41 1 13 88 11 87 4.55e-17 73.9
MS.gene037254.t1 AT5G14750 60.000 55 17 1 39 88 3 57 9.97e-17 70.9
MS.gene037254.t1 AT5G11050 42.667 75 40 2 15 88 105 177 2.33e-16 72.4
MS.gene037254.t1 AT1G56650 51.948 77 37 0 12 88 7 83 4.21e-16 70.5
MS.gene037254.t1 AT2G23290 46.667 75 37 2 15 88 13 85 6.25e-16 70.9
MS.gene037254.t1 AT3G12820 75.610 41 10 0 48 88 1 41 1.14e-15 68.6
MS.gene037254.t1 AT3G47600 52.308 65 27 1 24 88 21 81 1.55e-15 69.7
MS.gene037254.t1 AT1G66390 51.948 77 37 0 12 88 7 83 5.15e-15 67.8
MS.gene037254.t1 AT4G37260 42.667 75 40 2 15 88 13 85 7.96e-15 67.8
MS.gene037254.t1 AT3G27785 43.750 80 42 2 10 88 184 261 1.18e-14 67.8
MS.gene037254.t1 AT1G69560 43.750 80 42 2 10 88 102 179 2.00e-14 66.6
MS.gene037254.t1 AT1G69560 43.750 80 42 2 10 88 118 195 2.19e-14 66.6
MS.gene037254.t1 AT3G09230 45.333 75 38 2 15 88 55 127 2.48e-14 66.6
MS.gene037254.t1 AT4G18770 40.000 80 45 2 10 88 212 289 1.18e-13 64.7
MS.gene037254.t1 AT3G55730 44.000 75 39 2 15 88 56 128 1.49e-13 64.7
MS.gene037254.t1 AT5G40350 62.791 43 16 0 46 88 5 47 1.69e-13 62.4
MS.gene037254.t1 AT5G35550 50.000 66 30 1 26 88 27 92 2.03e-13 63.5
MS.gene037254.t1 AT5G67300 40.000 75 42 2 15 88 6 78 2.44e-13 63.5
MS.gene037254.t1 AT1G26780 45.455 77 39 2 13 88 96 170 2.97e-13 63.5
MS.gene037254.t1 AT3G27810 62.791 43 16 0 46 88 4 46 4.00e-13 61.6
MS.gene037254.t1 AT1G26780 45.455 77 39 2 13 88 96 170 5.21e-13 62.4
MS.gene037254.t1 AT3G46130 60.000 45 18 0 44 88 8 52 1.58e-12 60.8
MS.gene037254.t1 AT3G09370 40.260 77 43 2 13 88 128 202 1.67e-12 61.6
MS.gene037254.t1 AT3G09370 40.260 77 43 2 13 88 133 207 1.68e-12 61.6
MS.gene037254.t1 AT3G09370 40.260 77 43 2 13 88 141 215 1.72e-12 61.6
MS.gene037254.t1 AT1G17950 44.737 76 39 2 14 88 4 77 2.23e-12 60.5
MS.gene037254.t1 AT3G50060 38.667 75 43 2 15 88 6 78 3.35e-12 60.5
MS.gene037254.t1 AT5G02320 40.260 77 43 2 13 88 125 199 3.59e-12 60.5
MS.gene037254.t1 AT5G02320 40.260 77 43 2 13 88 125 199 3.59e-12 60.5
MS.gene037254.t1 AT3G46130 62.791 43 16 0 46 88 20 62 3.76e-12 59.7
MS.gene037254.t1 AT5G40360 38.667 75 43 2 15 88 158 230 4.09e-12 60.5
MS.gene037254.t1 AT5G59780 62.791 43 16 0 46 88 20 62 4.62e-12 59.3
MS.gene037254.t1 AT5G02320 40.260 77 43 2 13 88 65 139 5.46e-12 60.1
MS.gene037254.t1 AT2G39880 42.667 75 40 2 15 88 50 122 6.06e-12 60.1
MS.gene037254.t1 AT3G53200 65.116 43 15 0 46 88 9 51 8.79e-12 58.5
MS.gene037254.t1 AT5G11510 40.260 77 43 2 13 88 79 153 1.26e-11 59.3
MS.gene037254.t1 AT5G11510 40.260 77 43 2 13 88 79 153 1.26e-11 59.3
MS.gene037254.t1 AT5G11510 40.260 77 43 2 13 88 79 153 1.26e-11 59.3
MS.gene037254.t1 AT5G11510 40.260 77 43 2 13 88 79 153 2.04e-11 58.5
MS.gene037254.t1 AT5G11510 40.260 77 43 2 13 88 79 153 2.34e-11 58.5
MS.gene037254.t1 AT4G32730 36.364 77 46 2 13 88 85 159 3.81e-11 57.8
MS.gene037254.t1 AT4G32730 36.364 77 46 2 13 88 85 159 3.81e-11 57.8
MS.gene037254.t1 AT4G32730 36.364 77 46 2 13 88 85 159 3.81e-11 57.8
MS.gene037254.t1 AT4G32730 36.364 77 46 2 13 88 85 159 3.81e-11 57.8
MS.gene037254.t1 AT3G29020 37.333 75 44 2 15 88 67 139 3.83e-11 57.4
MS.gene037254.t1 AT4G32730 36.364 77 46 2 13 88 85 159 5.10e-11 57.4
MS.gene037254.t1 AT5G17800 40.541 74 43 1 15 88 93 165 6.77e-11 57.0

Find 22 sgRNAs with CRISPR-Local

Find 25 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATGAATCCCATTATTA+AGG 0.275432 7.2:+59673858 None:intergenic
AAATATTTACCAGCAAGTTT+AGG 0.340530 7.2:+59673824 None:intergenic
CAGTAAAACCACCTCTCTTA+AGG 0.350372 7.2:+59673652 None:intergenic
TACATGCCCGTCTTGGTAAC+AGG 0.388478 7.2:-59673602 None:intergenic
TTAATAATGGGATTCATTGT+TGG 0.399119 7.2:-59673856 MS.gene037254:CDS
TGGGATTCATTGTTGGAGAA+TGG 0.443481 7.2:-59673849 MS.gene037254:CDS
TGAGATGGATTAATTATTTG+AGG 0.448610 7.2:-59673680 MS.gene037254:CDS
AGAATGGTTCCTAAACTTGC+TGG 0.450215 7.2:-59673833 MS.gene037254:intron
TTAAGAGGTTCAAAGAAAAT+GGG 0.482047 7.2:-59673962 None:intergenic
TGATCTTCTTCAATAGTCCA+TGG 0.502122 7.2:+59673899 None:intergenic
AAACCACCTCTCTTAAGGTC+TGG 0.517152 7.2:+59673657 None:intergenic
ATACAACTACATGCCCGTCT+TGG 0.546437 7.2:-59673609 MS.gene037254:CDS
CAACCATGTTGTGATAAGGT+TGG 0.554200 7.2:-59673935 MS.gene037254:CDS
GATAAGGTTGGTTTGAAGAG+AGG 0.562058 7.2:-59673923 MS.gene037254:CDS
GTTGTACCTGTTACCAAGAC+GGG 0.563704 7.2:+59673596 None:intergenic
AGGCCAGACCTTAAGAGAGG+TGG 0.579334 7.2:-59673660 MS.gene037254:CDS
GAAAGAGTTGTAGACTGAGA+TGG 0.589115 7.2:-59673695 MS.gene037254:CDS
AAGACAACCATGTTGTGATA+AGG 0.590627 7.2:-59673939 MS.gene037254:CDS
TTGAGGCCAGACCTTAAGAG+AGG 0.617024 7.2:-59673663 MS.gene037254:CDS
CGTTGTACCTGTTACCAAGA+CGG 0.638126 7.2:+59673595 None:intergenic
AAACCAACCTTATCACAACA+TGG 0.641918 7.2:+59673932 None:intergenic
TTGGTTTGAAGAGAGGACCA+TGG 0.663165 7.2:-59673916 MS.gene037254:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTATCCTTAATAAT+GGG - chr7.2:59673682-59673701 MS.gene037254:CDS 15.0%
!!! AACATGGTGAATATTTTTTA+AGG - chr7.2:59673818-59673837 MS.gene037254:intron 20.0%
!!! GTGAATTTTATCCTTAATAA+TGG - chr7.2:59673681-59673700 MS.gene037254:CDS 20.0%
! AAATATTTACCAGCAAGTTT+AGG + chr7.2:59673729-59673748 None:intergenic 25.0%
! AACAATGAATCCCATTATTA+AGG + chr7.2:59673695-59673714 None:intergenic 25.0%
!! TTAATAATGGGATTCATTGT+TGG - chr7.2:59673694-59673713 MS.gene037254:CDS 25.0%
!!! TGAGATGGATTAATTATTTG+AGG - chr7.2:59673870-59673889 MS.gene037254:CDS 25.0%
!!! TTGAAAAAGTGTTTCTAACA+TGG - chr7.2:59673802-59673821 MS.gene037254:intron 25.0%
!!! TTTTAAGGTCTTCTAAGATG+TGG - chr7.2:59673833-59673852 MS.gene037254:intron 30.0%
AAACCAACCTTATCACAACA+TGG + chr7.2:59673621-59673640 None:intergenic 35.0%
AAGACAACCATGTTGTGATA+AGG - chr7.2:59673611-59673630 MS.gene037254:CDS 35.0%
TGATCTTCTTCAATAGTCCA+TGG + chr7.2:59673654-59673673 None:intergenic 35.0%
!! TGGTTTTACTGAAATGGAAG+AGG - chr7.2:59673910-59673929 MS.gene037254:CDS 35.0%
AGAATGGTTCCTAAACTTGC+TGG - chr7.2:59673717-59673736 MS.gene037254:intron 40.0%
CAACCATGTTGTGATAAGGT+TGG - chr7.2:59673615-59673634 MS.gene037254:CDS 40.0%
CAGTAAAACCACCTCTCTTA+AGG + chr7.2:59673901-59673920 None:intergenic 40.0%
GAAAGAGTTGTAGACTGAGA+TGG - chr7.2:59673855-59673874 MS.gene037254:CDS 40.0%
TGGGATTCATTGTTGGAGAA+TGG - chr7.2:59673701-59673720 MS.gene037254:CDS 40.0%
!! GAGAGGTGGTTTTACTGAAA+TGG - chr7.2:59673904-59673923 MS.gene037254:CDS 40.0%
!! GATAAGGTTGGTTTGAAGAG+AGG - chr7.2:59673627-59673646 MS.gene037254:CDS 40.0%
AAACCACCTCTCTTAAGGTC+TGG + chr7.2:59673896-59673915 None:intergenic 45.0%
ATACAACTACATGCCCGTCT+TGG - chr7.2:59673941-59673960 MS.gene037254:CDS 45.0%
! TTGGTTTGAAGAGAGGACCA+TGG - chr7.2:59673634-59673653 MS.gene037254:CDS 45.0%
TTGAGGCCAGACCTTAAGAG+AGG - chr7.2:59673887-59673906 MS.gene037254:CDS 50.0%
AGGCCAGACCTTAAGAGAGG+TGG - chr7.2:59673890-59673909 MS.gene037254:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 59673603 59673969 59673603 ID=MS.gene037254
chr7.2 mRNA 59673603 59673969 59673603 ID=MS.gene037254.t1;Parent=MS.gene037254
chr7.2 exon 59673834 59673969 59673834 ID=MS.gene037254.t1.exon1;Parent=MS.gene037254.t1
chr7.2 CDS 59673834 59673969 59673834 ID=cds.MS.gene037254.t1;Parent=MS.gene037254.t1
chr7.2 exon 59673603 59673732 59673603 ID=MS.gene037254.t1.exon2;Parent=MS.gene037254.t1
chr7.2 CDS 59673603 59673732 59673603 ID=cds.MS.gene037254.t1;Parent=MS.gene037254.t1
Gene Sequence

>MS.gene037254

AAAATGGGAAGACAACCATGTTGTGATAAGGTTGGTTTGAAGAGAGGACCATGGACTATTGAAGAAGATCACAAGCTTGTGAATTTTATCCTTAATAATGGGATTCATTGTTGGAGAATGGTTCCTAAACTTGCTGGTAAATATTTTAATTGAAAGTTTTTTGTTTTTCACATGCTTTTTAGTTGATAGATAAGTTTCATTGAAAAAGTGTTTCTAACATGGTGAATATTTTTTAAGGTCTTCTAAGATGTGGAAAGAGTTGTAGACTGAGATGGATTAATTATTTGAGGCCAGACCTTAAGAGAGGTGGTTTTACTGAAATGGAAGAGGATCAAATTATACAACTACATGCCCGTCTTGGTAACAG
Protein sequence

>MS.gene037254.t1

KMGRQPCCDKVGLKRGPWTIEEDHKLVNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHARLGN