Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037274.t1 | XP_013470325.1 | 87.7 | 324 | 26 | 5 | 1 | 318 | 1 | 316 | 1.40E-145 | 525.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037274.t1 | Q8VZ20 | 42.1 | 321 | 148 | 8 | 16 | 318 | 14 | 314 | 3.2e-53 | 210.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037274.t1 | A0A072VSJ7 | 87.7 | 324 | 26 | 5 | 1 | 318 | 1 | 316 | 1.0e-145 | 525.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037274.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037274.t1 | MTR_1g112650 | 87.654 | 324 | 26 | 5 | 1 | 318 | 1 | 316 | 0.0 | 512 |
| MS.gene037274.t1 | MTR_7g020870 | 70.317 | 347 | 68 | 7 | 1 | 318 | 1 | 341 | 8.17e-152 | 429 |
| MS.gene037274.t1 | MTR_7g020870 | 68.400 | 250 | 52 | 5 | 1 | 229 | 1 | 244 | 7.16e-102 | 299 |
| MS.gene037274.t1 | MTR_8g100130 | 34.627 | 335 | 160 | 9 | 32 | 318 | 38 | 361 | 3.70e-48 | 165 |
| MS.gene037274.t1 | MTR_1g094045 | 29.605 | 152 | 67 | 5 | 43 | 154 | 56 | 207 | 3.24e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037274.t1 | AT2G33550 | 45.732 | 328 | 126 | 12 | 16 | 318 | 14 | 314 | 1.82e-75 | 234 |
| MS.gene037274.t1 | AT4G31270 | 31.250 | 112 | 71 | 2 | 43 | 154 | 19 | 124 | 2.87e-13 | 69.7 |
| MS.gene037274.t1 | AT2G35640 | 32.824 | 131 | 71 | 5 | 43 | 160 | 22 | 148 | 1.03e-11 | 65.5 |
Find 92 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCCGTCATCGGAATT+AGG | 0.129660 | 1.1:-79725041 | None:intergenic |
| CCAACTGTAATCTCTTGTTC+TGG | 0.278506 | 1.1:-79725850 | None:intergenic |
| CAATTCCGTCATCGGAATTA+GGG | 0.284671 | 1.1:-79725040 | None:intergenic |
| GTGGACGAGGCAGGAGATTC+TGG | 0.309093 | 1.1:+79725133 | MS.gene037274:CDS |
| TTCATATTTATGATAGTAAT+AGG | 0.313951 | 1.1:+79725534 | MS.gene037274:CDS |
| TTGCAGTTTGATTCTGTTGC+TGG | 0.313975 | 1.1:-79725877 | None:intergenic |
| GGTCGAAACGGTTCGTTGTT+TGG | 0.317436 | 1.1:+79725200 | MS.gene037274:CDS |
| TCCGATGACGGAATTGATAA+TGG | 0.339364 | 1.1:+79725047 | MS.gene037274:CDS |
| TCTTTCTCCTTCTAGATTTG+AGG | 0.339729 | 1.1:-79725717 | None:intergenic |
| GAATCAAACTGCAAGTAATA+TGG | 0.352089 | 1.1:+79725886 | MS.gene037274:CDS |
| GGTGGCTGCAACGGCTGTTC+CGG | 0.353509 | 1.1:+79725466 | MS.gene037274:CDS |
| CGCAGATTACAAGAAGATTA+AGG | 0.365457 | 1.1:+79725322 | MS.gene037274:CDS |
| GATTAAGGAGTGGGAGTCTC+AGG | 0.378865 | 1.1:+79725337 | MS.gene037274:CDS |
| CACATCTTCGCCATCATTCA+CGG | 0.396485 | 1.1:-79725087 | None:intergenic |
| GTGATGAAAGGGAGTCGTTT+TGG | 0.402620 | 1.1:+79725363 | MS.gene037274:CDS |
| GATAAGCTTGCAAATGCTCT+TGG | 0.406542 | 1.1:+79725920 | MS.gene037274:CDS |
| CAACTGTAATCTCTTGTTCT+GGG | 0.411973 | 1.1:-79725849 | None:intergenic |
| CTCGAGCATTGCCTTCTCCT+TGG | 0.418681 | 1.1:-79725670 | None:intergenic |
| CGTTTCGACCTGGTTTCAAC+CGG | 0.422688 | 1.1:-79725187 | None:intergenic |
| TGCTTCTCTGAGACTGAGAT+TGG | 0.427099 | 1.1:-79725623 | None:intergenic |
| TCCGGTGGCTGTGGCTGCAC+CGG | 0.437897 | 1.1:+79725484 | MS.gene037274:CDS |
| CAACAAGCCTCAAATCTAGA+AGG | 0.443939 | 1.1:+79725710 | MS.gene037274:CDS |
| TCACCAACCACCTCTGAAAC+CGG | 0.447629 | 1.1:-79725503 | None:intergenic |
| CGATTCAGTGTAAGAAGCGA+TGG | 0.458477 | 1.1:+79725288 | MS.gene037274:CDS |
| ATAAGCTTGCAAATGCTCTT+GGG | 0.460039 | 1.1:+79725921 | MS.gene037274:CDS |
| TCTGAGACTGAGATTGGAAC+GGG | 0.470242 | 1.1:-79725617 | None:intergenic |
| TCCATTATCAATTCCGTCAT+CGG | 0.473675 | 1.1:-79725048 | None:intergenic |
| TCTTACACTGAATCGGTGTC+CGG | 0.476690 | 1.1:-79725280 | None:intergenic |
| CATCGCTTCTTACACTGAAT+CGG | 0.477582 | 1.1:-79725287 | None:intergenic |
| CCACTCCTCAGTGGCTTCCA+AGG | 0.481478 | 1.1:+79725653 | MS.gene037274:CDS |
| AACGGCTGTTCCGGTGGCTG+TGG | 0.485143 | 1.1:+79725475 | MS.gene037274:CDS |
| CCGTCATCCGCCGTGAATGA+TGG | 0.495613 | 1.1:+79725077 | MS.gene037274:CDS |
| GGCGAAGATGTGAAACCAAC+GGG | 0.499148 | 1.1:+79725098 | MS.gene037274:CDS |
| CACCGTTGTAACCTTCCCGT+TGG | 0.499564 | 1.1:-79725113 | None:intergenic |
| GAGATTCTGGTGCTAGTACA+TGG | 0.500266 | 1.1:+79725146 | MS.gene037274:CDS |
| ACCGGTGCAGCCACAGCCAC+CGG | 0.509504 | 1.1:-79725485 | None:intergenic |
| GTTACAACGGTGGACGAGGC+AGG | 0.511770 | 1.1:+79725124 | MS.gene037274:CDS |
| TTCAGAGGTGGTTGGTGATG+AGG | 0.515224 | 1.1:+79725508 | MS.gene037274:CDS |
| GTCTCAGGTGAGTGATGAAA+GGG | 0.520228 | 1.1:+79725352 | MS.gene037274:CDS |
| GGCTGCAACGGCTGTTCCGG+TGG | 0.520416 | 1.1:+79725469 | MS.gene037274:CDS |
| CTCAGTGGCTTCCAAGGAGA+AGG | 0.523796 | 1.1:+79725659 | MS.gene037274:CDS |
| GGTTAGAACGTAACGAGGGT+TGG | 0.525104 | 1.1:-79725019 | None:intergenic |
| AACAACGAACCGTTTCGACC+TGG | 0.525473 | 1.1:-79725197 | None:intergenic |
| ACGTTGAGTTGAGGAGAGAG+AGG | 0.528535 | 1.1:+79725393 | MS.gene037274:CDS |
| GTGAGAAACATGGTGTGAAC+CGG | 0.529962 | 1.1:+79725261 | MS.gene037274:CDS |
| CCATCATTCACGGCGGATGA+CGG | 0.532480 | 1.1:-79725077 | None:intergenic |
| AGAGGTGGTTGGTGATGAGG+AGG | 0.536029 | 1.1:+79725511 | MS.gene037274:CDS |
| AGGAGAGAGAGGAAATTGCC+TGG | 0.537062 | 1.1:+79725404 | MS.gene037274:CDS |
| TGATTCAGCGGTGGCTGCAA+CGG | 0.542719 | 1.1:+79725457 | MS.gene037274:CDS |
| GCACCGGTTTCAGAGGTGGT+TGG | 0.543134 | 1.1:+79725500 | MS.gene037274:CDS |
| AAGGAGAAAGAAAGAGGAAG+CGG | 0.544131 | 1.1:+79725729 | MS.gene037274:CDS |
| ATCTAGAAGGAGAAAGAAAG+AGG | 0.547355 | 1.1:+79725723 | MS.gene037274:CDS |
| TTGGTTCGTTTGAGAAGAAG+TGG | 0.552340 | 1.1:+79725219 | MS.gene037274:CDS |
| AGTCTCAGGTGAGTGATGAA+AGG | 0.552467 | 1.1:+79725351 | MS.gene037274:CDS |
| TATTTATGATAGTAATAGGA+AGG | 0.553774 | 1.1:+79725538 | MS.gene037274:CDS |
| CGGTTGAAACCAGGTCGAAA+CGG | 0.555133 | 1.1:+79725188 | MS.gene037274:CDS |
| CTTCTCCTTGGAAGCCACTG+AGG | 0.555485 | 1.1:-79725658 | None:intergenic |
| GAAAGAACGATGCTGAAAGC+CGG | 0.556340 | 1.1:+79725168 | MS.gene037274:CDS |
| TTACAAGAAGATTAAGGAGT+GGG | 0.557499 | 1.1:+79725328 | MS.gene037274:CDS |
| CTCTGAGACTGAGATTGGAA+CGG | 0.559843 | 1.1:-79725618 | None:intergenic |
| AGGAAGCGGTTTGCAACAGA+AGG | 0.571454 | 1.1:+79725743 | MS.gene037274:CDS |
| GCTGAAAGCCGGTTGAAACC+AGG | 0.575628 | 1.1:+79725179 | MS.gene037274:CDS |
| GATTCAGTGTAAGAAGCGAT+GGG | 0.580190 | 1.1:+79725289 | MS.gene037274:CDS |
| GAAGGTTACAACGGTGGACG+AGG | 0.580650 | 1.1:+79725120 | MS.gene037274:CDS |
| GGCTGCACCGGTTTCAGAGG+TGG | 0.581806 | 1.1:+79725496 | MS.gene037274:CDS |
| CCTTGGAAGCCACTGAGGAG+TGG | 0.583205 | 1.1:-79725653 | None:intergenic |
| TGTGGCTGCACCGGTTTCAG+AGG | 0.592183 | 1.1:+79725493 | MS.gene037274:CDS |
| CTTAATCTTCTTGTAATCTG+CGG | 0.598671 | 1.1:-79725321 | None:intergenic |
| TTATAATATTCTTGATTCAG+CGG | 0.602422 | 1.1:+79725445 | MS.gene037274:CDS |
| CCAGAACAAGAGATTACAGT+TGG | 0.612831 | 1.1:+79725850 | MS.gene037274:CDS |
| GATGCTATGTGAACAGCTAG+AGG | 0.617201 | 1.1:+79725826 | MS.gene037274:CDS |
| CAGTGTGTTCCACTCCTCAG+TGG | 0.621372 | 1.1:+79725644 | MS.gene037274:CDS |
| TCTTCGTACTGTGAGAAACA+TGG | 0.622882 | 1.1:+79725251 | MS.gene037274:CDS |
| AACAGAAGGCAATGAAGAGG+AGG | 0.623007 | 1.1:+79725757 | MS.gene037274:CDS |
| TGGCGAAGATGTGAAACCAA+CGG | 0.623950 | 1.1:+79725097 | MS.gene037274:CDS |
| TCTAACCCTAATTCCGATGA+CGG | 0.628696 | 1.1:+79725035 | MS.gene037274:CDS |
| GGATGATGAACGTTGAGTTG+AGG | 0.628749 | 1.1:+79725384 | MS.gene037274:CDS |
| GTTTGAGAAGAAGTGGACGT+TGG | 0.629824 | 1.1:+79725226 | MS.gene037274:CDS |
| TAATATTCTTGATTCAGCGG+TGG | 0.634646 | 1.1:+79725448 | MS.gene037274:CDS |
| TGCAACAGAAGGCAATGAAG+AGG | 0.638315 | 1.1:+79725754 | MS.gene037274:CDS |
| ATTACAAGAAGATTAAGGAG+TGG | 0.640078 | 1.1:+79725327 | MS.gene037274:CDS |
| CAAGGAGAAGGCAATGCTCG+AGG | 0.643488 | 1.1:+79725671 | MS.gene037274:CDS |
| TCATTCACGGCGGATGACGG+TGG | 0.658142 | 1.1:-79725074 | None:intergenic |
| ACCTCCCAATCAAAACAACC+AGG | 0.662249 | 1.1:-79725422 | None:intergenic |
| GATAGTAATAGGAAGGTGAG+TGG | 0.668870 | 1.1:+79725545 | MS.gene037274:CDS |
| ATTAGGGTTAGAACGTAACG+AGG | 0.673798 | 1.1:-79725024 | None:intergenic |
| AAGATGTGAAACCAACGGGA+AGG | 0.680756 | 1.1:+79725102 | MS.gene037274:CDS |
| CAACGGGAAGGTTACAACGG+TGG | 0.690383 | 1.1:+79725114 | MS.gene037274:CDS |
| AACCAACGGGAAGGTTACAA+CGG | 0.725397 | 1.1:+79725111 | MS.gene037274:CDS |
| ATTCAGTGTAAGAAGCGATG+GGG | 0.726554 | 1.1:+79725290 | MS.gene037274:CDS |
| TTAGGGTTAGAACGTAACGA+GGG | 0.750121 | 1.1:-79725023 | None:intergenic |
| ATCTTCGCCATCATTCACGG+CGG | 0.776820 | 1.1:-79725084 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATATTTATGATAGTAAT+AGG | + | chr1.1:79725534-79725553 | MS.gene037274:CDS | 15.0% |
| !! | TATTTATGATAGTAATAGGA+AGG | + | chr1.1:79725538-79725557 | MS.gene037274:CDS | 20.0% |
| !! | TTATAATATTCTTGATTCAG+CGG | + | chr1.1:79725445-79725464 | MS.gene037274:CDS | 20.0% |
| !! | ATTGAAGTGTTAGAGAAAAA+TGG | + | chr1.1:79725800-79725819 | MS.gene037274:CDS | 25.0% |
| ATTACAAGAAGATTAAGGAG+TGG | + | chr1.1:79725327-79725346 | MS.gene037274:CDS | 30.0% | |
| CTTAATCTTCTTGTAATCTG+CGG | - | chr1.1:79725324-79725343 | None:intergenic | 30.0% | |
| GAATCAAACTGCAAGTAATA+TGG | + | chr1.1:79725886-79725905 | MS.gene037274:CDS | 30.0% | |
| TTACAAGAAGATTAAGGAGT+GGG | + | chr1.1:79725328-79725347 | MS.gene037274:CDS | 30.0% | |
| !! | AGATGAGTTGTTTTCTGATA+CGG | + | chr1.1:79725571-79725590 | MS.gene037274:CDS | 30.0% |
| ATAAGCTTGCAAATGCTCTT+GGG | + | chr1.1:79725921-79725940 | MS.gene037274:CDS | 35.0% | |
| ATCTAGAAGGAGAAAGAAAG+AGG | + | chr1.1:79725723-79725742 | MS.gene037274:CDS | 35.0% | |
| CAACTGTAATCTCTTGTTCT+GGG | - | chr1.1:79725852-79725871 | None:intergenic | 35.0% | |
| CGCAGATTACAAGAAGATTA+AGG | + | chr1.1:79725322-79725341 | MS.gene037274:CDS | 35.0% | |
| TAATATTCTTGATTCAGCGG+TGG | + | chr1.1:79725448-79725467 | MS.gene037274:CDS | 35.0% | |
| TCCATTATCAATTCCGTCAT+CGG | - | chr1.1:79725051-79725070 | None:intergenic | 35.0% | |
| TCTTTCTCCTTCTAGATTTG+AGG | - | chr1.1:79725720-79725739 | None:intergenic | 35.0% | |
| !!! | AATTGCCTGGTTGTTTTGAT+TGG | + | chr1.1:79725417-79725436 | MS.gene037274:CDS | 35.0% |
| !!! | ATTGCCTGGTTGTTTTGATT+GGG | + | chr1.1:79725418-79725437 | MS.gene037274:CDS | 35.0% |
| AAGGAGAAAGAAAGAGGAAG+CGG | + | chr1.1:79725729-79725748 | MS.gene037274:CDS | 40.0% | |
| ATTAGGGTTAGAACGTAACG+AGG | - | chr1.1:79725027-79725046 | None:intergenic | 40.0% | |
| ATTCAGTGTAAGAAGCGATG+GGG | + | chr1.1:79725290-79725309 | MS.gene037274:CDS | 40.0% | |
| CAACAAGCCTCAAATCTAGA+AGG | + | chr1.1:79725710-79725729 | MS.gene037274:CDS | 40.0% | |
| CAATTCCGTCATCGGAATTA+GGG | - | chr1.1:79725043-79725062 | None:intergenic | 40.0% | |
| CATCGCTTCTTACACTGAAT+CGG | - | chr1.1:79725290-79725309 | None:intergenic | 40.0% | |
| CCAACTGTAATCTCTTGTTC+TGG | - | chr1.1:79725853-79725872 | None:intergenic | 40.0% | |
| CCAGAACAAGAGATTACAGT+TGG | + | chr1.1:79725850-79725869 | MS.gene037274:CDS | 40.0% | |
| GATAAGCTTGCAAATGCTCT+TGG | + | chr1.1:79725920-79725939 | MS.gene037274:CDS | 40.0% | |
| GATAGTAATAGGAAGGTGAG+TGG | + | chr1.1:79725545-79725564 | MS.gene037274:CDS | 40.0% | |
| GATTCAGTGTAAGAAGCGAT+GGG | + | chr1.1:79725289-79725308 | MS.gene037274:CDS | 40.0% | |
| TCAATTCCGTCATCGGAATT+AGG | - | chr1.1:79725044-79725063 | None:intergenic | 40.0% | |
| TCTAACCCTAATTCCGATGA+CGG | + | chr1.1:79725035-79725054 | MS.gene037274:CDS | 40.0% | |
| TCTTCGTACTGTGAGAAACA+TGG | + | chr1.1:79725251-79725270 | MS.gene037274:CDS | 40.0% | |
| TTAGGGTTAGAACGTAACGA+GGG | - | chr1.1:79725026-79725045 | None:intergenic | 40.0% | |
| TTGCAGTTTGATTCTGTTGC+TGG | - | chr1.1:79725880-79725899 | None:intergenic | 40.0% | |
| ! | TTGGTTCGTTTGAGAAGAAG+TGG | + | chr1.1:79725219-79725238 | MS.gene037274:CDS | 40.0% |
| !! | GTTGTTTTCTGATACGGAGA+AGG | + | chr1.1:79725577-79725596 | MS.gene037274:CDS | 40.0% |
| !! | TCCGATGACGGAATTGATAA+TGG | + | chr1.1:79725047-79725066 | MS.gene037274:CDS | 40.0% |
| AACAGAAGGCAATGAAGAGG+AGG | + | chr1.1:79725757-79725776 | MS.gene037274:CDS | 45.0% | |
| AACCAACGGGAAGGTTACAA+CGG | + | chr1.1:79725111-79725130 | MS.gene037274:CDS | 45.0% | |
| AAGATGTGAAACCAACGGGA+AGG | + | chr1.1:79725102-79725121 | MS.gene037274:CDS | 45.0% | |
| ACCTCCCAATCAAAACAACC+AGG | - | chr1.1:79725425-79725444 | None:intergenic | 45.0% | |
| AGTCTCAGGTGAGTGATGAA+AGG | + | chr1.1:79725351-79725370 | MS.gene037274:CDS | 45.0% | |
| CACATCTTCGCCATCATTCA+CGG | - | chr1.1:79725090-79725109 | None:intergenic | 45.0% | |
| CGATTCAGTGTAAGAAGCGA+TGG | + | chr1.1:79725288-79725307 | MS.gene037274:CDS | 45.0% | |
| GAAAGAACGATGCTGAAAGC+CGG | + | chr1.1:79725168-79725187 | MS.gene037274:CDS | 45.0% | |
| GATGCTATGTGAACAGCTAG+AGG | + | chr1.1:79725826-79725845 | MS.gene037274:CDS | 45.0% | |
| GTCTCAGGTGAGTGATGAAA+GGG | + | chr1.1:79725352-79725371 | MS.gene037274:CDS | 45.0% | |
| GTGAGAAACATGGTGTGAAC+CGG | + | chr1.1:79725261-79725280 | MS.gene037274:CDS | 45.0% | |
| GTTTGAGAAGAAGTGGACGT+TGG | + | chr1.1:79725226-79725245 | MS.gene037274:CDS | 45.0% | |
| TGCAACAGAAGGCAATGAAG+AGG | + | chr1.1:79725754-79725773 | MS.gene037274:CDS | 45.0% | |
| TGGCGAAGATGTGAAACCAA+CGG | + | chr1.1:79725097-79725116 | MS.gene037274:CDS | 45.0% | |
| ! | GAGATTCTGGTGCTAGTACA+TGG | + | chr1.1:79725146-79725165 | MS.gene037274:CDS | 45.0% |
| ! | GGATGATGAACGTTGAGTTG+AGG | + | chr1.1:79725384-79725403 | MS.gene037274:CDS | 45.0% |
| ! | GTGATGAAAGGGAGTCGTTT+TGG | + | chr1.1:79725363-79725382 | MS.gene037274:CDS | 45.0% |
| ! | TCTGAGACTGAGATTGGAAC+GGG | - | chr1.1:79725620-79725639 | None:intergenic | 45.0% |
| ! | TCTTACACTGAATCGGTGTC+CGG | - | chr1.1:79725283-79725302 | None:intergenic | 45.0% |
| !! | CTCTGAGACTGAGATTGGAA+CGG | - | chr1.1:79725621-79725640 | None:intergenic | 45.0% |
| !! | TGCTTCTCTGAGACTGAGAT+TGG | - | chr1.1:79725626-79725645 | None:intergenic | 45.0% |
| AACAACGAACCGTTTCGACC+TGG | - | chr1.1:79725200-79725219 | None:intergenic | 50.0% | |
| AGGAAGCGGTTTGCAACAGA+AGG | + | chr1.1:79725743-79725762 | MS.gene037274:CDS | 50.0% | |
| AGGAGAGAGAGGAAATTGCC+TGG | + | chr1.1:79725404-79725423 | MS.gene037274:CDS | 50.0% | |
| ATCTTCGCCATCATTCACGG+CGG | - | chr1.1:79725087-79725106 | None:intergenic | 50.0% | |
| CGGTTGAAACCAGGTCGAAA+CGG | + | chr1.1:79725188-79725207 | MS.gene037274:CDS | 50.0% | |
| CGTTTCGACCTGGTTTCAAC+CGG | - | chr1.1:79725190-79725209 | None:intergenic | 50.0% | |
| GATTAAGGAGTGGGAGTCTC+AGG | + | chr1.1:79725337-79725356 | MS.gene037274:CDS | 50.0% | |
| GGCGAAGATGTGAAACCAAC+GGG | + | chr1.1:79725098-79725117 | MS.gene037274:CDS | 50.0% | |
| GGTCGAAACGGTTCGTTGTT+TGG | + | chr1.1:79725200-79725219 | MS.gene037274:CDS | 50.0% | |
| GGTTAGAACGTAACGAGGGT+TGG | - | chr1.1:79725022-79725041 | None:intergenic | 50.0% | |
| !! | ACGTTGAGTTGAGGAGAGAG+AGG | + | chr1.1:79725393-79725412 | MS.gene037274:CDS | 50.0% |
| !! | TCACCAACCACCTCTGAAAC+CGG | - | chr1.1:79725506-79725525 | None:intergenic | 50.0% |
| !! | TTCAGAGGTGGTTGGTGATG+AGG | + | chr1.1:79725508-79725527 | MS.gene037274:CDS | 50.0% |
| !!! | GCCTGGTTGTTTTGATTGGG+AGG | + | chr1.1:79725421-79725440 | MS.gene037274:CDS | 50.0% |
| CAACGGGAAGGTTACAACGG+TGG | + | chr1.1:79725114-79725133 | MS.gene037274:CDS | 55.0% | |
| CAAGGAGAAGGCAATGCTCG+AGG | + | chr1.1:79725671-79725690 | MS.gene037274:CDS | 55.0% | |
| CACCGTTGTAACCTTCCCGT+TGG | - | chr1.1:79725116-79725135 | None:intergenic | 55.0% | |
| CAGTGTGTTCCACTCCTCAG+TGG | + | chr1.1:79725644-79725663 | MS.gene037274:CDS | 55.0% | |
| CCATCATTCACGGCGGATGA+CGG | - | chr1.1:79725080-79725099 | None:intergenic | 55.0% | |
| CTCAGTGGCTTCCAAGGAGA+AGG | + | chr1.1:79725659-79725678 | MS.gene037274:CDS | 55.0% | |
| CTTCTCCTTGGAAGCCACTG+AGG | - | chr1.1:79725661-79725680 | None:intergenic | 55.0% | |
| GAAGGTTACAACGGTGGACG+AGG | + | chr1.1:79725120-79725139 | MS.gene037274:CDS | 55.0% | |
| GCTGAAAGCCGGTTGAAACC+AGG | + | chr1.1:79725179-79725198 | MS.gene037274:CDS | 55.0% | |
| TGATTCAGCGGTGGCTGCAA+CGG | + | chr1.1:79725457-79725476 | MS.gene037274:CDS | 55.0% | |
| ! | CTCGAGCATTGCCTTCTCCT+TGG | - | chr1.1:79725673-79725692 | None:intergenic | 55.0% |
| !! | AGAGGTGGTTGGTGATGAGG+AGG | + | chr1.1:79725511-79725530 | MS.gene037274:CDS | 55.0% |
| CCACTCCTCAGTGGCTTCCA+AGG | + | chr1.1:79725653-79725672 | MS.gene037274:CDS | 60.0% | |
| CCGTCATCCGCCGTGAATGA+TGG | + | chr1.1:79725077-79725096 | MS.gene037274:CDS | 60.0% | |
| CCTTGGAAGCCACTGAGGAG+TGG | - | chr1.1:79725656-79725675 | None:intergenic | 60.0% | |
| GTGGACGAGGCAGGAGATTC+TGG | + | chr1.1:79725133-79725152 | MS.gene037274:CDS | 60.0% | |
| GTTACAACGGTGGACGAGGC+AGG | + | chr1.1:79725124-79725143 | MS.gene037274:CDS | 60.0% | |
| ! | TCATTCACGGCGGATGACGG+TGG | - | chr1.1:79725077-79725096 | None:intergenic | 60.0% |
| !! | GCACCGGTTTCAGAGGTGGT+TGG | + | chr1.1:79725500-79725519 | MS.gene037274:CDS | 60.0% |
| !! | TGTGGCTGCACCGGTTTCAG+AGG | + | chr1.1:79725493-79725512 | MS.gene037274:CDS | 60.0% |
| AACGGCTGTTCCGGTGGCTG+TGG | + | chr1.1:79725475-79725494 | MS.gene037274:CDS | 65.0% | |
| GGTGGCTGCAACGGCTGTTC+CGG | + | chr1.1:79725466-79725485 | MS.gene037274:CDS | 65.0% | |
| !! | GGCTGCACCGGTTTCAGAGG+TGG | + | chr1.1:79725496-79725515 | MS.gene037274:CDS | 65.0% |
| ACCGGTGCAGCCACAGCCAC+CGG | - | chr1.1:79725488-79725507 | None:intergenic | 70.0% | |
| GGCTGCAACGGCTGTTCCGG+TGG | + | chr1.1:79725469-79725488 | MS.gene037274:CDS | 70.0% | |
| TCCGGTGGCTGTGGCTGCAC+CGG | + | chr1.1:79725484-79725503 | MS.gene037274:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 79725008 | 79725964 | 79725008 | ID=MS.gene037274 |
| chr1.1 | mRNA | 79725008 | 79725964 | 79725008 | ID=MS.gene037274.t1;Parent=MS.gene037274 |
| chr1.1 | exon | 79725008 | 79725964 | 79725008 | ID=MS.gene037274.t1.exon1;Parent=MS.gene037274.t1 |
| chr1.1 | CDS | 79725008 | 79725964 | 79725008 | ID=cds.MS.gene037274.t1;Parent=MS.gene037274.t1 |
| Gene Sequence |
| Protein sequence |
