Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037276.t1 | XP_013470329.1 | 93.5 | 525 | 27 | 5 | 1 | 524 | 1 | 519 | 1.90E-267 | 931.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037276.t1 | Q9ZVX2 | 48.5 | 534 | 238 | 16 | 6 | 527 | 5 | 513 | 2.8e-107 | 390.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037276.t1 | A0A072VRJ5 | 93.5 | 525 | 27 | 5 | 1 | 524 | 1 | 519 | 1.3e-267 | 931.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037276.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037276.t1 | MTR_1g112680 | 94.667 | 525 | 21 | 5 | 1 | 524 | 1 | 519 | 0.0 | 1007 |
| MS.gene037276.t1 | MTR_8g064700 | 29.175 | 521 | 255 | 14 | 10 | 521 | 4 | 419 | 1.11e-59 | 203 |
| MS.gene037276.t1 | MTR_3g498695 | 34.653 | 202 | 114 | 1 | 317 | 518 | 293 | 476 | 5.07e-34 | 134 |
| MS.gene037276.t1 | MTR_3g498695 | 34.483 | 203 | 114 | 2 | 317 | 518 | 293 | 477 | 6.52e-33 | 131 |
| MS.gene037276.t1 | MTR_7g083900 | 36.139 | 202 | 106 | 4 | 321 | 518 | 285 | 467 | 1.15e-30 | 125 |
| MS.gene037276.t1 | MTR_7g083900 | 35.961 | 203 | 106 | 4 | 321 | 518 | 285 | 468 | 1.80e-30 | 124 |
| MS.gene037276.t1 | MTR_3g030700 | 32.990 | 194 | 99 | 2 | 312 | 501 | 186 | 352 | 1.41e-24 | 105 |
| MS.gene037276.t1 | MTR_2g081040 | 30.500 | 200 | 118 | 4 | 321 | 518 | 176 | 356 | 3.29e-23 | 101 |
| MS.gene037276.t1 | MTR_2g038040 | 34.946 | 186 | 101 | 5 | 315 | 497 | 45 | 213 | 1.96e-21 | 94.0 |
| MS.gene037276.t1 | MTR_3g104100 | 29.834 | 181 | 109 | 2 | 321 | 501 | 194 | 356 | 3.40e-21 | 95.9 |
| MS.gene037276.t1 | MTR_4g091910 | 33.333 | 171 | 81 | 3 | 321 | 491 | 46 | 183 | 6.46e-20 | 88.6 |
| MS.gene037276.t1 | MTR_4g091990 | 30.348 | 201 | 90 | 4 | 301 | 498 | 23 | 176 | 4.55e-19 | 85.9 |
| MS.gene037276.t1 | MTR_2g084280 | 30.857 | 175 | 81 | 4 | 307 | 478 | 121 | 258 | 9.53e-18 | 84.7 |
| MS.gene037276.t1 | MTR_4g057270 | 30.994 | 171 | 70 | 5 | 316 | 474 | 143 | 277 | 3.86e-17 | 83.2 |
| MS.gene037276.t1 | MTR_3g111290 | 28.230 | 209 | 107 | 4 | 310 | 517 | 161 | 327 | 1.96e-15 | 78.2 |
| MS.gene037276.t1 | MTR_5g030770 | 29.954 | 217 | 98 | 8 | 310 | 517 | 144 | 315 | 6.00e-15 | 76.3 |
| MS.gene037276.t1 | MTR_5g030770 | 28.241 | 216 | 97 | 6 | 310 | 517 | 144 | 309 | 9.53e-15 | 75.9 |
| MS.gene037276.t1 | MTR_1g072320 | 28.426 | 197 | 108 | 6 | 316 | 503 | 459 | 631 | 3.37e-14 | 75.9 |
| MS.gene037276.t1 | MTR_8g024790 | 28.571 | 231 | 114 | 9 | 266 | 488 | 243 | 430 | 3.68e-14 | 75.1 |
| MS.gene037276.t1 | MTR_5g014600 | 29.412 | 187 | 110 | 7 | 315 | 500 | 142 | 307 | 4.17e-14 | 73.9 |
| MS.gene037276.t1 | MTR_8g098275 | 31.720 | 186 | 111 | 6 | 302 | 480 | 288 | 464 | 9.38e-14 | 73.9 |
| MS.gene037276.t1 | MTR_8g098275 | 31.720 | 186 | 111 | 6 | 302 | 480 | 224 | 400 | 1.01e-13 | 73.6 |
| MS.gene037276.t1 | MTR_8g098275 | 31.720 | 186 | 111 | 6 | 302 | 480 | 381 | 557 | 1.83e-13 | 73.6 |
| MS.gene037276.t1 | MTR_7g096350 | 42.045 | 88 | 50 | 1 | 290 | 377 | 324 | 410 | 2.12e-13 | 72.8 |
| MS.gene037276.t1 | MTR_0246s0020 | 25.862 | 174 | 104 | 4 | 314 | 486 | 190 | 339 | 5.18e-13 | 71.2 |
| MS.gene037276.t1 | MTR_0246s0020 | 25.862 | 174 | 104 | 4 | 314 | 486 | 190 | 339 | 5.64e-13 | 70.9 |
| MS.gene037276.t1 | MTR_8g027495 | 28.342 | 187 | 98 | 5 | 326 | 512 | 462 | 612 | 7.13e-13 | 71.6 |
| MS.gene037276.t1 | MTR_5g030430 | 28.947 | 190 | 107 | 6 | 306 | 487 | 472 | 641 | 7.45e-13 | 71.6 |
| MS.gene037276.t1 | MTR_0250s0040 | 28.492 | 179 | 100 | 5 | 308 | 486 | 74 | 224 | 7.68e-13 | 69.3 |
| MS.gene037276.t1 | MTR_8g067280 | 30.723 | 166 | 90 | 5 | 326 | 487 | 466 | 610 | 2.30e-12 | 70.1 |
| MS.gene037276.t1 | MTR_7g117670 | 55.556 | 54 | 24 | 0 | 326 | 379 | 406 | 459 | 3.22e-12 | 69.3 |
| MS.gene037276.t1 | MTR_8g024770 | 40.260 | 77 | 44 | 1 | 301 | 375 | 256 | 332 | 8.55e-12 | 67.8 |
| MS.gene037276.t1 | MTR_5g014640 | 33.000 | 100 | 60 | 1 | 294 | 386 | 119 | 218 | 1.60e-11 | 66.2 |
| MS.gene037276.t1 | MTR_8g066770 | 28.736 | 174 | 104 | 5 | 323 | 493 | 116 | 272 | 1.61e-11 | 65.9 |
| MS.gene037276.t1 | MTR_5g014520 | 42.222 | 90 | 47 | 3 | 309 | 398 | 145 | 229 | 2.43e-11 | 65.5 |
| MS.gene037276.t1 | MTR_2g104550 | 26.977 | 215 | 123 | 6 | 277 | 486 | 90 | 275 | 3.47e-11 | 65.1 |
| MS.gene037276.t1 | MTR_5g014560 | 31.387 | 137 | 81 | 2 | 241 | 377 | 63 | 186 | 4.20e-11 | 64.7 |
| MS.gene037276.t1 | MTR_4g092700 | 49.091 | 55 | 28 | 0 | 323 | 377 | 159 | 213 | 4.23e-11 | 64.7 |
| MS.gene037276.t1 | MTR_4g097950 | 30.851 | 94 | 65 | 0 | 284 | 377 | 32 | 125 | 8.38e-11 | 62.8 |
| MS.gene037276.t1 | MTR_0194s0050 | 25.373 | 201 | 135 | 4 | 324 | 519 | 187 | 377 | 8.58e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037276.t1 | AT2G16910 | 48.417 | 537 | 234 | 17 | 6 | 527 | 5 | 513 | 7.97e-149 | 439 |
| MS.gene037276.t1 | AT3G26744 | 34.158 | 202 | 108 | 3 | 321 | 518 | 306 | 486 | 1.54e-30 | 125 |
| MS.gene037276.t1 | AT3G26744 | 34.158 | 202 | 108 | 3 | 321 | 518 | 306 | 486 | 1.54e-30 | 125 |
| MS.gene037276.t1 | AT3G26744 | 34.158 | 202 | 108 | 3 | 321 | 518 | 306 | 486 | 1.54e-30 | 125 |
| MS.gene037276.t1 | AT3G26744 | 36.612 | 183 | 92 | 2 | 321 | 500 | 306 | 467 | 4.29e-30 | 123 |
| MS.gene037276.t1 | AT1G12860 | 35.678 | 199 | 105 | 3 | 321 | 518 | 266 | 442 | 6.61e-30 | 122 |
| MS.gene037276.t1 | AT1G12860 | 36.667 | 180 | 92 | 2 | 321 | 500 | 266 | 423 | 9.11e-29 | 119 |
| MS.gene037276.t1 | AT1G10610 | 35.404 | 161 | 88 | 4 | 7 | 157 | 8 | 162 | 1.82e-25 | 109 |
| MS.gene037276.t1 | AT1G10610 | 26.341 | 205 | 116 | 4 | 320 | 519 | 262 | 436 | 3.61e-16 | 81.3 |
| MS.gene037276.t1 | AT5G57150 | 32.367 | 207 | 115 | 5 | 304 | 505 | 32 | 218 | 4.46e-20 | 90.1 |
| MS.gene037276.t1 | AT5G57150 | 32.178 | 202 | 112 | 5 | 304 | 500 | 32 | 213 | 7.80e-20 | 89.0 |
| MS.gene037276.t1 | AT5G57150 | 32.178 | 202 | 112 | 5 | 304 | 500 | 33 | 214 | 1.01e-19 | 88.6 |
| MS.gene037276.t1 | AT5G57150 | 32.178 | 202 | 112 | 5 | 304 | 500 | 33 | 214 | 1.13e-19 | 88.6 |
| MS.gene037276.t1 | AT5G57150 | 32.178 | 202 | 112 | 5 | 304 | 500 | 33 | 214 | 1.43e-19 | 89.0 |
| MS.gene037276.t1 | AT1G10610 | 32.836 | 134 | 75 | 3 | 33 | 157 | 5 | 132 | 2.74e-17 | 84.7 |
| MS.gene037276.t1 | AT1G10610 | 26.341 | 205 | 116 | 4 | 320 | 519 | 232 | 406 | 3.42e-16 | 81.3 |
| MS.gene037276.t1 | AT4G21330 | 27.094 | 203 | 121 | 4 | 320 | 522 | 30 | 205 | 5.10e-17 | 80.5 |
| MS.gene037276.t1 | AT2G28160 | 29.878 | 164 | 89 | 4 | 314 | 477 | 123 | 260 | 8.86e-17 | 82.0 |
| MS.gene037276.t1 | AT2G28160 | 29.878 | 164 | 89 | 4 | 314 | 477 | 123 | 260 | 8.92e-17 | 81.6 |
| MS.gene037276.t1 | AT1G63650 | 28.571 | 196 | 122 | 4 | 325 | 516 | 408 | 589 | 1.38e-16 | 83.2 |
| MS.gene037276.t1 | AT1G63650 | 28.571 | 196 | 122 | 4 | 325 | 516 | 408 | 589 | 1.38e-16 | 83.2 |
| MS.gene037276.t1 | AT1G63650 | 28.571 | 196 | 122 | 4 | 325 | 516 | 408 | 589 | 1.38e-16 | 83.2 |
| MS.gene037276.t1 | AT5G46760 | 31.481 | 162 | 87 | 4 | 326 | 487 | 419 | 556 | 2.38e-16 | 82.4 |
| MS.gene037276.t1 | AT1G10610 | 26.341 | 205 | 116 | 4 | 320 | 519 | 165 | 339 | 3.40e-16 | 80.5 |
| MS.gene037276.t1 | AT2G46510 | 44.086 | 93 | 47 | 1 | 307 | 394 | 375 | 467 | 9.60e-16 | 80.5 |
| MS.gene037276.t1 | AT4G29930 | 28.643 | 199 | 119 | 5 | 321 | 510 | 53 | 237 | 1.14e-15 | 77.4 |
| MS.gene037276.t1 | AT5G65640 | 28.767 | 219 | 122 | 5 | 310 | 527 | 166 | 351 | 3.93e-15 | 77.4 |
| MS.gene037276.t1 | AT4G17880 | 27.459 | 244 | 141 | 7 | 252 | 487 | 338 | 553 | 5.35e-15 | 78.2 |
| MS.gene037276.t1 | AT5G65640 | 57.746 | 71 | 30 | 0 | 310 | 380 | 166 | 236 | 5.56e-15 | 76.3 |
| MS.gene037276.t1 | AT5G10570 | 29.858 | 211 | 100 | 7 | 312 | 517 | 138 | 305 | 8.03e-15 | 75.9 |
| MS.gene037276.t1 | AT4G29930 | 28.261 | 184 | 111 | 4 | 321 | 497 | 53 | 222 | 2.13e-14 | 73.9 |
| MS.gene037276.t1 | AT4G29930 | 28.261 | 184 | 111 | 4 | 321 | 497 | 53 | 222 | 2.13e-14 | 73.9 |
| MS.gene037276.t1 | AT4G37850 | 26.842 | 190 | 112 | 4 | 317 | 506 | 147 | 309 | 3.57e-14 | 74.3 |
| MS.gene037276.t1 | AT4G37850 | 26.842 | 190 | 112 | 4 | 317 | 506 | 147 | 309 | 3.57e-14 | 74.3 |
| MS.gene037276.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 321 | 380 | 53 | 112 | 4.93e-14 | 71.2 |
| MS.gene037276.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 321 | 380 | 53 | 112 | 5.70e-14 | 72.0 |
| MS.gene037276.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 321 | 380 | 53 | 112 | 5.81e-14 | 72.0 |
| MS.gene037276.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 321 | 380 | 53 | 112 | 6.17e-14 | 71.6 |
| MS.gene037276.t1 | AT5G41315 | 27.638 | 199 | 125 | 6 | 325 | 516 | 449 | 635 | 8.99e-14 | 74.7 |
| MS.gene037276.t1 | AT5G41315 | 27.638 | 199 | 125 | 6 | 325 | 516 | 444 | 630 | 9.25e-14 | 74.3 |
| MS.gene037276.t1 | AT5G41315 | 27.638 | 199 | 125 | 6 | 325 | 516 | 452 | 638 | 9.43e-14 | 74.3 |
| MS.gene037276.t1 | AT4G09820 | 26.316 | 190 | 90 | 3 | 323 | 510 | 364 | 505 | 8.17e-13 | 71.2 |
| MS.gene037276.t1 | AT3G24140 | 26.923 | 208 | 125 | 6 | 324 | 519 | 200 | 392 | 1.49e-12 | 70.1 |
| MS.gene037276.t1 | AT3G24140 | 26.794 | 209 | 126 | 6 | 323 | 519 | 199 | 392 | 1.68e-12 | 69.7 |
| MS.gene037276.t1 | AT4G16430 | 43.421 | 76 | 38 | 1 | 307 | 377 | 300 | 375 | 6.14e-12 | 68.2 |
| MS.gene037276.t1 | AT1G32640 | 22.026 | 454 | 265 | 18 | 4 | 377 | 63 | 507 | 1.90e-11 | 67.0 |
| MS.gene037276.t1 | AT2G22750 | 26.316 | 171 | 103 | 3 | 316 | 486 | 148 | 295 | 7.50e-11 | 64.3 |
| MS.gene037276.t1 | AT4G00870 | 40.323 | 62 | 37 | 0 | 326 | 387 | 253 | 314 | 7.75e-11 | 64.7 |
| MS.gene037276.t1 | AT2G22750 | 26.316 | 171 | 103 | 3 | 316 | 486 | 148 | 295 | 7.76e-11 | 63.9 |
| MS.gene037276.t1 | AT2G22750 | 26.316 | 171 | 103 | 3 | 316 | 486 | 144 | 291 | 8.57e-11 | 63.9 |
Find 105 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCTTATTTGTGTCTAA+TGG | 0.118167 | 1.1:-79747606 | None:intergenic |
| ACATTGTTATTATTATTATT+TGG | 0.194014 | 1.1:-79747969 | None:intergenic |
| CTATCAAGCTTTGAGATTCT+TGG | 0.205780 | 1.1:-79747807 | None:intergenic |
| CTCTTGTTGGTTTGAATGGC+TGG | 0.239275 | 1.1:+79746101 | MS.gene037276:CDS |
| TGAAATCCATGTTCTGCTTT+TGG | 0.239465 | 1.1:-79747993 | None:intergenic |
| CTTGATAGAGCATCTATTCT+TGG | 0.248227 | 1.1:+79747822 | MS.gene037276:CDS |
| GCTTCTTATTTGTGTCTAAT+GGG | 0.272892 | 1.1:-79747605 | None:intergenic |
| CAGCAACAAGGTTCTTTGAT+TGG | 0.308174 | 1.1:-79747728 | None:intergenic |
| AGATCACATGAGTTTGTTCT+TGG | 0.337642 | 1.1:-79746385 | None:intergenic |
| GTGGAAGTGGCTCAGATAGA+TGG | 0.338551 | 1.1:+79748236 | MS.gene037276:CDS |
| GATGTTCTTCTCCACCATTT+TGG | 0.343592 | 1.1:-79746321 | None:intergenic |
| GTTATATAACCTTCGTTCAT+TGG | 0.349149 | 1.1:+79747782 | MS.gene037276:CDS |
| GAACTTACATGTAAAGTGTT+TGG | 0.359394 | 1.1:-79746603 | None:intergenic |
| GAAGGAAGAAACTGAATGAT+AGG | 0.368436 | 1.1:+79747760 | MS.gene037276:CDS |
| CAAATCTTCATGCTGGAACT+TGG | 0.371640 | 1.1:+79748607 | MS.gene037276:CDS |
| AGACCTCTTGTTGGTTTGAA+TGG | 0.376737 | 1.1:+79746097 | MS.gene037276:CDS |
| GTGTTTGGATCCAAGCTATT+GGG | 0.381111 | 1.1:-79746588 | None:intergenic |
| TAGGTATGGAAGTGGAAAGT+TGG | 0.382059 | 1.1:-79746414 | None:intergenic |
| ATGCAATCAAATCCAATTGT+AGG | 0.393492 | 1.1:+79747306 | MS.gene037276:CDS |
| ATTGGGATAGTTCAACCAAT+TGG | 0.398322 | 1.1:-79746571 | None:intergenic |
| CAGAACATGGATTTCATGTT+GGG | 0.411727 | 1.1:+79748000 | MS.gene037276:CDS |
| TTTATATACCCTGAATGTAT+AGG | 0.420224 | 1.1:-79746433 | None:intergenic |
| GGTTGGGATGTTGTTGTGGT+GGG | 0.420257 | 1.1:+79746287 | MS.gene037276:CDS |
| TGAGCTCTTTGTAACTAAAC+AGG | 0.421848 | 1.1:+79746788 | MS.gene037276:CDS |
| AAGAGGATGATGGAAAATAT+AGG | 0.425274 | 1.1:+79747685 | MS.gene037276:CDS |
| AGTGTTTGGATCCAAGCTAT+TGG | 0.426318 | 1.1:-79746589 | None:intergenic |
| ATCATGCTCCTCTTCTGTGT+TGG | 0.434342 | 1.1:-79747538 | None:intergenic |
| TTTCCCTGTCTCTTCATGTA+GGG | 0.439137 | 1.1:+79746345 | MS.gene037276:CDS |
| AAGAAGCAAGAACGTGTTGT+TGG | 0.443354 | 1.1:+79747621 | MS.gene037276:CDS |
| TATAGGAGAAGAAGTGGAAA+AGG | 0.445604 | 1.1:+79747702 | MS.gene037276:CDS |
| TTGGGATAGTTCAACCAATT+GGG | 0.445630 | 1.1:-79746570 | None:intergenic |
| TATTAACTAACCAGCCCAAT+TGG | 0.449599 | 1.1:+79746556 | MS.gene037276:CDS |
| GAGAGATTAAGACCTCTTGT+TGG | 0.450531 | 1.1:+79746088 | MS.gene037276:CDS |
| AGGTATGGAAGTGGAAAGTT+GGG | 0.459335 | 1.1:-79746413 | None:intergenic |
| ATGGAGGCTTTGAACACTTT+AGG | 0.460171 | 1.1:+79748317 | MS.gene037276:CDS |
| AGTAACTGTGTATATGTTGA+TGG | 0.466614 | 1.1:+79747933 | MS.gene037276:CDS |
| GTAGGGATGAACCACTCAAT+TGG | 0.467727 | 1.1:+79747264 | MS.gene037276:CDS |
| GCAGAACATGGATTTCATGT+TGG | 0.469960 | 1.1:+79747999 | MS.gene037276:CDS |
| TGGTTGGGATGTTGTTGTGG+TGG | 0.472495 | 1.1:+79746286 | MS.gene037276:CDS |
| GGAAAATATAGGAGAAGAAG+TGG | 0.472548 | 1.1:+79747696 | MS.gene037276:CDS |
| GATCACATGAGTTTGTTCTT+GGG | 0.473126 | 1.1:-79746384 | None:intergenic |
| TCTTGTTGGTTTGAATGGCT+GGG | 0.473478 | 1.1:+79746102 | MS.gene037276:CDS |
| GATTCAATGTCTCTGATGAA+TGG | 0.473958 | 1.1:-79747365 | None:intergenic |
| GCTGGGATTACTGTGTCTAC+TGG | 0.476054 | 1.1:+79746119 | MS.gene037276:CDS |
| ACTTCCATACCTATACATTC+AGG | 0.477080 | 1.1:+79746424 | MS.gene037276:CDS |
| AAATAATCAATATATGTTTG+TGG | 0.482225 | 1.1:+79747581 | MS.gene037276:CDS |
| GGCTTTGAACACTTTAGGCA+TGG | 0.486692 | 1.1:+79748322 | MS.gene037276:CDS |
| ATGAATATTGCAGGCACAAG+TGG | 0.489997 | 1.1:+79748217 | MS.gene037276:intron |
| TTATATATAGGTATCTAGAA+TGG | 0.490580 | 1.1:+79746266 | MS.gene037276:intron |
| GTTGAACTATCCCAATAGCT+TGG | 0.501147 | 1.1:+79746578 | MS.gene037276:CDS |
| CAGAATGAAGAAGAGGATGA+TGG | 0.501916 | 1.1:+79747675 | MS.gene037276:CDS |
| ATTGAACAGGATTCATGCAC+AGG | 0.504490 | 1.1:+79746530 | MS.gene037276:intron |
| TTCTCTTCCTCTCAGCAACA+AGG | 0.506548 | 1.1:-79747740 | None:intergenic |
| ATATAGGTATCTAGAATGGT+TGG | 0.508602 | 1.1:+79746270 | MS.gene037276:intron |
| GTATCCCTACATGAAGAGAC+AGG | 0.511754 | 1.1:-79746349 | None:intergenic |
| GGGAGTGAAAGCAACCAAAA+TGG | 0.520448 | 1.1:+79746307 | MS.gene037276:CDS |
| TATAGGTATCTAGAATGGTT+GGG | 0.521100 | 1.1:+79746271 | MS.gene037276:intron |
| TGGAAGTGGCTCAGATAGAT+GGG | 0.522256 | 1.1:+79748237 | MS.gene037276:CDS |
| TGAGACAAGACCCTTGTGAC+TGG | 0.522381 | 1.1:-79748366 | None:intergenic |
| CATGGATTTCATGTTGGGAA+TGG | 0.525371 | 1.1:+79748005 | MS.gene037276:CDS |
| ATTGCAGGCACAAGTGGAAG+TGG | 0.525672 | 1.1:+79748223 | MS.gene037276:intron |
| ATACCCTGAATGTATAGGTA+TGG | 0.529860 | 1.1:-79746428 | None:intergenic |
| CACGGAACAAATCTTCATGC+TGG | 0.531543 | 1.1:+79748600 | MS.gene037276:CDS |
| ACCTTGGTATTCTTCAGAGA+AGG | 0.541843 | 1.1:-79747475 | None:intergenic |
| CTATGTTTCAAAACAAAAGC+AGG | 0.545019 | 1.1:+79748028 | MS.gene037276:CDS |
| CTTCCATACCTATACATTCA+GGG | 0.546018 | 1.1:+79746425 | MS.gene037276:CDS |
| GGAAATTAAGTGAAGATCAA+AGG | 0.546606 | 1.1:+79746140 | MS.gene037276:CDS |
| GTCATGGTGGATCATGAAGT+AGG | 0.547641 | 1.1:+79747246 | MS.gene037276:CDS |
| TGAATGTATAGGTATGGAAG+TGG | 0.549991 | 1.1:-79746422 | None:intergenic |
| GATAGTTCAACCAATTGGGC+TGG | 0.552748 | 1.1:-79746566 | None:intergenic |
| GAATGGTTGGGATGTTGTTG+TGG | 0.554900 | 1.1:+79746283 | MS.gene037276:CDS |
| CAGGCACTGGAATCAAAACA+TGG | 0.559119 | 1.1:-79746755 | None:intergenic |
| CAGTGATCAGAATGAAGAAG+AGG | 0.559858 | 1.1:+79747668 | MS.gene037276:CDS |
| TCAACGAGTCCACCAGGCAC+TGG | 0.561965 | 1.1:-79746768 | None:intergenic |
| TTGTTGCTGAGAGGAAGAGA+AGG | 0.562094 | 1.1:+79747742 | MS.gene037276:CDS |
| ATTGTAGGTGATGAAAATGA+TGG | 0.563751 | 1.1:+79747321 | MS.gene037276:CDS |
| ATCAATTTCACAAAACCACC+TGG | 0.575508 | 1.1:-79748296 | None:intergenic |
| GATCATGAAGAAAAGAACCT+TGG | 0.576590 | 1.1:-79747491 | None:intergenic |
| AAGAGCTCAACGAGTCCACC+AGG | 0.577294 | 1.1:-79746774 | None:intergenic |
| AAACAAAAGCAGGAAGATGT+TGG | 0.583119 | 1.1:+79748038 | MS.gene037276:CDS |
| ATCTCAATGCATTGTCATGG+TGG | 0.583356 | 1.1:+79747233 | MS.gene037276:CDS |
| TGACAAGCAGACACAGCAGA+TGG | 0.586592 | 1.1:+79748070 | MS.gene037276:CDS |
| AAAGGAGAGTGAAATAGTTG+AGG | 0.586665 | 1.1:+79748544 | MS.gene037276:CDS |
| CACATCTCAATGCATTGTCA+TGG | 0.588350 | 1.1:+79747230 | MS.gene037276:CDS |
| TTGAATTGAAGCCAATTGAG+TGG | 0.597436 | 1.1:-79747275 | None:intergenic |
| TCTCAAATCCAACACAGAAG+AGG | 0.598059 | 1.1:+79747530 | MS.gene037276:CDS |
| TTCAATACAGATATGTCATG+TGG | 0.598259 | 1.1:-79747390 | None:intergenic |
| AGAGCTTCAAGATGAACTTG+AGG | 0.601650 | 1.1:+79747887 | MS.gene037276:CDS |
| AATGTTCCAAAAGCAGAACA+TGG | 0.606756 | 1.1:+79747987 | MS.gene037276:CDS |
| CAAAGAACCTTGTTGCTGAG+AGG | 0.619036 | 1.1:+79747733 | MS.gene037276:CDS |
| CTTGAGGAAAATTCAGACAC+AGG | 0.625559 | 1.1:+79747903 | MS.gene037276:CDS |
| TGCCACAGTAACCAGTCACA+AGG | 0.625627 | 1.1:+79748355 | MS.gene037276:CDS |
| AGATGCTATTGAATTTGTGA+AGG | 0.628469 | 1.1:+79747845 | MS.gene037276:CDS |
| CAGCCATTCAAACCAACAAG+AGG | 0.632565 | 1.1:-79746100 | None:intergenic |
| AGTGAAAGCAACCAAAATGG+TGG | 0.646392 | 1.1:+79746310 | MS.gene037276:CDS |
| ATTCACTACTAGAGCTGACA+CGG | 0.647595 | 1.1:+79748582 | MS.gene037276:CDS |
| TTCTTGGAACCAATGAACGA+AGG | 0.654816 | 1.1:-79747791 | None:intergenic |
| TCATGGTGGATCATGAAGTA+GGG | 0.655578 | 1.1:+79747247 | MS.gene037276:CDS |
| ACCCTTGTGACTGGTTACTG+TGG | 0.657104 | 1.1:-79748357 | None:intergenic |
| TGGGAATGAGTACTTTGTGA+AGG | 0.678653 | 1.1:+79748256 | MS.gene037276:CDS |
| CAAGCAGACACAGCAGATGG+AGG | 0.682677 | 1.1:+79748073 | MS.gene037276:CDS |
| TATCCCTACATGAAGAGACA+GGG | 0.687876 | 1.1:-79746348 | None:intergenic |
| ACCTTCTCTGAAGAATACCA+AGG | 0.692673 | 1.1:+79747474 | MS.gene037276:CDS |
| GCCACAGTAACCAGTCACAA+GGG | 0.696830 | 1.1:+79748356 | MS.gene037276:CDS |
| AGGCACTGGAATCAAAACAT+GGG | 0.706180 | 1.1:-79746754 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATTAGTATATTTATTT+AGG | - | chr1.1:79747149-79747168 | None:intergenic | 10.0% |
| !! | ATTTAATAGAACAAAAAATA+TGG | - | chr1.1:79746198-79746217 | None:intergenic | 10.0% |
| !!! | ACATTGTTATTATTATTATT+TGG | - | chr1.1:79747972-79747991 | None:intergenic | 10.0% |
| !! | AAAGGATTATATATAGATAA+AGG | - | chr1.1:79746501-79746520 | None:intergenic | 15.0% |
| !! | AAATAATCAATATATGTTTG+TGG | + | chr1.1:79747581-79747600 | MS.gene037276:CDS | 15.0% |
| !! | AAGGATTATATATAGATAAA+GGG | - | chr1.1:79746500-79746519 | None:intergenic | 15.0% |
| !! | AATTTATACACTAATAACAA+AGG | + | chr1.1:79748121-79748140 | MS.gene037276:intron | 15.0% |
| !! | ACTCAATATATCAATATATA+TGG | - | chr1.1:79746705-79746724 | None:intergenic | 15.0% |
| !! | ATATAATTATGAACAGAAAA+AGG | + | chr1.1:79748526-79748545 | MS.gene037276:intron | 15.0% |
| !! | ATGATATTAAATTTCTTTCT+TGG | + | chr1.1:79748494-79748513 | MS.gene037276:intron | 15.0% |
| !! | CATAATAAAAATATGAAGTA+CGG | + | chr1.1:79747032-79747051 | MS.gene037276:intron | 15.0% |
| !! | TATAATATAATATAACAGGT+TGG | + | chr1.1:79747180-79747199 | MS.gene037276:intron | 15.0% |
| !! | TGATATTAAATTTCTTTCTT+GGG | + | chr1.1:79748495-79748514 | MS.gene037276:intron | 15.0% |
| !! | TGTGTATAATATAATATAAC+AGG | + | chr1.1:79747176-79747195 | MS.gene037276:intron | 15.0% |
| !!! | ATTTGTTGGTTTTTATATAT+AGG | + | chr1.1:79746254-79746273 | MS.gene037276:intron | 15.0% |
| !!! | TATAAATTTTAGTATAAGCT+AGG | - | chr1.1:79748109-79748128 | None:intergenic | 15.0% |
| !! | AATTCATAAGTTAACAAACA+AGG | - | chr1.1:79748432-79748451 | None:intergenic | 20.0% |
| !! | AGACAAATTCAAATCAAAAT+AGG | + | chr1.1:79748461-79748480 | MS.gene037276:intron | 20.0% |
| !! | AGATGAATTAGTTGAAAAAT+AGG | - | chr1.1:79746644-79746663 | None:intergenic | 20.0% |
| !! | ATTATATATAGATAAAGGGA+GGG | - | chr1.1:79746496-79746515 | None:intergenic | 20.0% |
| !! | TCATTGAACGATATATTATA+AGG | + | chr1.1:79746841-79746860 | MS.gene037276:intron | 20.0% |
| !! | TTATATATAGGTATCTAGAA+TGG | + | chr1.1:79746266-79746285 | MS.gene037276:intron | 20.0% |
| !!! | CTTTTTTGAATTATCAAGTA+AGG | + | chr1.1:79746999-79747018 | MS.gene037276:intron | 20.0% |
| !!! | TAAGATCATGTTAATTTTGA+TGG | + | chr1.1:79746939-79746958 | MS.gene037276:intron | 20.0% |
| !!! | TAATTGTGATGTTAATTTGT+TGG | + | chr1.1:79746240-79746259 | MS.gene037276:intron | 20.0% |
| !!! | TTTTTCAACTAATTCATCTT+TGG | + | chr1.1:79746645-79746664 | MS.gene037276:intron | 20.0% |
| ! | GATTATATATAGATAAAGGG+AGG | - | chr1.1:79746497-79746516 | None:intergenic | 25.0% |
| ! | GGTCTAATTATGATATTGAA+GGG | - | chr1.1:79746876-79746895 | None:intergenic | 25.0% |
| ! | TATATGGAATTAGCTGAAAA+AGG | - | chr1.1:79746689-79746708 | None:intergenic | 25.0% |
| ! | TTTATATACCCTGAATGTAT+AGG | - | chr1.1:79746436-79746455 | None:intergenic | 25.0% |
| !! | ATTATCTAAGATTGTGATCT+TGG | - | chr1.1:79746912-79746931 | None:intergenic | 25.0% |
| !! | GAATTATCAAGTAAGGTTTT+TGG | + | chr1.1:79747006-79747025 | MS.gene037276:intron | 25.0% |
| !! | TTTTGCAGGAAACAATTAAT+GGG | + | chr1.1:79746730-79746749 | MS.gene037276:intron | 25.0% |
| !! | TTTTTGCAGGAAACAATTAA+TGG | + | chr1.1:79746729-79746748 | MS.gene037276:intron | 25.0% |
| !!! | ATATTGAGTACTATTTTTGC+AGG | + | chr1.1:79746716-79746735 | MS.gene037276:intron | 25.0% |
| !!! | CTCAAATGTTTTTAAAGTTG+AGG | + | chr1.1:79748385-79748404 | MS.gene037276:CDS | 25.0% |
| AGATGCTATTGAATTTGTGA+AGG | + | chr1.1:79747845-79747864 | MS.gene037276:CDS | 30.0% | |
| AGTAACTGTGTATATGTTGA+TGG | + | chr1.1:79747933-79747952 | MS.gene037276:CDS | 30.0% | |
| ATGCAATCAAATCCAATTGT+AGG | + | chr1.1:79747306-79747325 | MS.gene037276:CDS | 30.0% | |
| ATTGTAGGTGATGAAAATGA+TGG | + | chr1.1:79747321-79747340 | MS.gene037276:CDS | 30.0% | |
| CACATGAATATGAATATTGC+AGG | + | chr1.1:79748208-79748227 | MS.gene037276:intron | 30.0% | |
| CACTTTACATGTAAGTTCAT+TGG | + | chr1.1:79746608-79746627 | MS.gene037276:intron | 30.0% | |
| CTATGTTTCAAAACAAAAGC+AGG | + | chr1.1:79748028-79748047 | MS.gene037276:CDS | 30.0% | |
| CTGTTCAATGAAGAGATTAA+AGG | - | chr1.1:79746519-79746538 | None:intergenic | 30.0% | |
| CTTTAATCTCTTCATTGAAC+AGG | + | chr1.1:79746517-79746536 | MS.gene037276:intron | 30.0% | |
| GGAAATTAAGTGAAGATCAA+AGG | + | chr1.1:79746140-79746159 | MS.gene037276:CDS | 30.0% | |
| GGGTCTAATTATGATATTGA+AGG | - | chr1.1:79746877-79746896 | None:intergenic | 30.0% | |
| GTTATATAACCTTCGTTCAT+TGG | + | chr1.1:79747782-79747801 | MS.gene037276:CDS | 30.0% | |
| TTCAATACAGATATGTCATG+TGG | - | chr1.1:79747393-79747412 | None:intergenic | 30.0% | |
| ! | ATATAGGTATCTAGAATGGT+TGG | + | chr1.1:79746270-79746289 | MS.gene037276:intron | 30.0% |
| ! | GAACTTACATGTAAAGTGTT+TGG | - | chr1.1:79746606-79746625 | None:intergenic | 30.0% |
| ! | GCTTCTTATTTGTGTCTAAT+GGG | - | chr1.1:79747608-79747627 | None:intergenic | 30.0% |
| ! | TATAGGTATCTAGAATGGTT+GGG | + | chr1.1:79746271-79746290 | MS.gene037276:intron | 30.0% |
| ! | TCATTTTCATCACCTACAAT+TGG | - | chr1.1:79747321-79747340 | None:intergenic | 30.0% |
| ! | TGCTTCTTATTTGTGTCTAA+TGG | - | chr1.1:79747609-79747628 | None:intergenic | 30.0% |
| !! | AAGAGGATGATGGAAAATAT+AGG | + | chr1.1:79747685-79747704 | MS.gene037276:CDS | 30.0% |
| !! | TAAAAAAGCGTCAAAGATGT+TGG | - | chr1.1:79747059-79747078 | None:intergenic | 30.0% |
| AAACAAAAGCAGGAAGATGT+TGG | + | chr1.1:79748038-79748057 | MS.gene037276:CDS | 35.0% | |
| AAAGGAGAGTGAAATAGTTG+AGG | + | chr1.1:79748544-79748563 | MS.gene037276:CDS | 35.0% | |
| AATGTTCCAAAAGCAGAACA+TGG | + | chr1.1:79747987-79748006 | MS.gene037276:CDS | 35.0% | |
| ACTTCCATACCTATACATTC+AGG | + | chr1.1:79746424-79746443 | MS.gene037276:CDS | 35.0% | |
| ATACCCTGAATGTATAGGTA+TGG | - | chr1.1:79746431-79746450 | None:intergenic | 35.0% | |
| ATCAATTTCACAAAACCACC+TGG | - | chr1.1:79748299-79748318 | None:intergenic | 35.0% | |
| ATTGGGATAGTTCAACCAAT+TGG | - | chr1.1:79746574-79746593 | None:intergenic | 35.0% | |
| CAGAACATGGATTTCATGTT+GGG | + | chr1.1:79748000-79748019 | MS.gene037276:CDS | 35.0% | |
| CTTCCATACCTATACATTCA+GGG | + | chr1.1:79746425-79746444 | MS.gene037276:CDS | 35.0% | |
| GAAGGAAGAAACTGAATGAT+AGG | + | chr1.1:79747760-79747779 | MS.gene037276:CDS | 35.0% | |
| GATCATGAAGAAAAGAACCT+TGG | - | chr1.1:79747494-79747513 | None:intergenic | 35.0% | |
| GATTCAATGTCTCTGATGAA+TGG | - | chr1.1:79747368-79747387 | None:intergenic | 35.0% | |
| GGAAAATATAGGAGAAGAAG+TGG | + | chr1.1:79747696-79747715 | MS.gene037276:CDS | 35.0% | |
| TATAGGAGAAGAAGTGGAAA+AGG | + | chr1.1:79747702-79747721 | MS.gene037276:CDS | 35.0% | |
| TATTAACTAACCAGCCCAAT+TGG | + | chr1.1:79746556-79746575 | MS.gene037276:CDS | 35.0% | |
| TGAATGTATAGGTATGGAAG+TGG | - | chr1.1:79746425-79746444 | None:intergenic | 35.0% | |
| TGAGCTCTTTGTAACTAAAC+AGG | + | chr1.1:79746788-79746807 | MS.gene037276:CDS | 35.0% | |
| TTGAATTGAAGCCAATTGAG+TGG | - | chr1.1:79747278-79747297 | None:intergenic | 35.0% | |
| TTGGGATAGTTCAACCAATT+GGG | - | chr1.1:79746573-79746592 | None:intergenic | 35.0% | |
| ! | AGATCACATGAGTTTGTTCT+TGG | - | chr1.1:79746388-79746407 | None:intergenic | 35.0% |
| ! | CTTGATAGAGCATCTATTCT+TGG | + | chr1.1:79747822-79747841 | MS.gene037276:CDS | 35.0% |
| ! | GATCACATGAGTTTGTTCTT+GGG | - | chr1.1:79746387-79746406 | None:intergenic | 35.0% |
| ! | TGAAATCCATGTTCTGCTTT+TGG | - | chr1.1:79747996-79748015 | None:intergenic | 35.0% |
| !! | CTATCAAGCTTTGAGATTCT+TGG | - | chr1.1:79747810-79747829 | None:intergenic | 35.0% |
| !! | GATCTTGGTGTTGTTAACAA+GGG | - | chr1.1:79746897-79746916 | None:intergenic | 35.0% |
| !! | TGATCTTGGTGTTGTTAACA+AGG | - | chr1.1:79746898-79746917 | None:intergenic | 35.0% |
| !!! | AGGTGGTTTTGTGAAATTGA+TGG | + | chr1.1:79748298-79748317 | MS.gene037276:CDS | 35.0% |
| !!! | TGGTTTTGTGAAATTGATGG+AGG | + | chr1.1:79748301-79748320 | MS.gene037276:CDS | 35.0% |
| AAGAAGCAAGAACGTGTTGT+TGG | + | chr1.1:79747621-79747640 | MS.gene037276:CDS | 40.0% | |
| ACCTTGGTATTCTTCAGAGA+AGG | - | chr1.1:79747478-79747497 | None:intergenic | 40.0% | |
| AGAGCTTCAAGATGAACTTG+AGG | + | chr1.1:79747887-79747906 | MS.gene037276:CDS | 40.0% | |
| AGGTATGGAAGTGGAAAGTT+GGG | - | chr1.1:79746416-79746435 | None:intergenic | 40.0% | |
| AGTGAAAGCAACCAAAATGG+TGG | + | chr1.1:79746310-79746329 | MS.gene037276:CDS | 40.0% | |
| AGTGTTTGGATCCAAGCTAT+TGG | - | chr1.1:79746592-79746611 | None:intergenic | 40.0% | |
| ATCTCAATGCATTGTCATGG+TGG | + | chr1.1:79747233-79747252 | MS.gene037276:CDS | 40.0% | |
| ATGAATATTGCAGGCACAAG+TGG | + | chr1.1:79748217-79748236 | MS.gene037276:intron | 40.0% | |
| ATTCACTACTAGAGCTGACA+CGG | + | chr1.1:79748582-79748601 | MS.gene037276:CDS | 40.0% | |
| ATTGAACAGGATTCATGCAC+AGG | + | chr1.1:79746530-79746549 | MS.gene037276:intron | 40.0% | |
| CAAATCTTCATGCTGGAACT+TGG | + | chr1.1:79748607-79748626 | MS.gene037276:CDS | 40.0% | |
| CACATCTCAATGCATTGTCA+TGG | + | chr1.1:79747230-79747249 | MS.gene037276:CDS | 40.0% | |
| CAGAATGAAGAAGAGGATGA+TGG | + | chr1.1:79747675-79747694 | MS.gene037276:CDS | 40.0% | |
| CAGCAACAAGGTTCTTTGAT+TGG | - | chr1.1:79747731-79747750 | None:intergenic | 40.0% | |
| CAGTGATCAGAATGAAGAAG+AGG | + | chr1.1:79747668-79747687 | MS.gene037276:CDS | 40.0% | |
| CATGGATTTCATGTTGGGAA+TGG | + | chr1.1:79748005-79748024 | MS.gene037276:CDS | 40.0% | |
| CTTGAGGAAAATTCAGACAC+AGG | + | chr1.1:79747903-79747922 | MS.gene037276:CDS | 40.0% | |
| GAGAGATTAAGACCTCTTGT+TGG | + | chr1.1:79746088-79746107 | MS.gene037276:CDS | 40.0% | |
| GCAGAACATGGATTTCATGT+TGG | + | chr1.1:79747999-79748018 | MS.gene037276:CDS | 40.0% | |
| GTGTTTGGATCCAAGCTATT+GGG | - | chr1.1:79746591-79746610 | None:intergenic | 40.0% | |
| GTTGAACTATCCCAATAGCT+TGG | + | chr1.1:79746578-79746597 | MS.gene037276:CDS | 40.0% | |
| TAGGTATGGAAGTGGAAAGT+TGG | - | chr1.1:79746417-79746436 | None:intergenic | 40.0% | |
| TATCCCTACATGAAGAGACA+GGG | - | chr1.1:79746351-79746370 | None:intergenic | 40.0% | |
| TCTCAAATCCAACACAGAAG+AGG | + | chr1.1:79747530-79747549 | MS.gene037276:CDS | 40.0% | |
| TGGGAATGAGTACTTTGTGA+AGG | + | chr1.1:79748256-79748275 | MS.gene037276:CDS | 40.0% | |
| TTCTTGGAACCAATGAACGA+AGG | - | chr1.1:79747794-79747813 | None:intergenic | 40.0% | |
| TTTCCCTGTCTCTTCATGTA+GGG | + | chr1.1:79746345-79746364 | MS.gene037276:CDS | 40.0% | |
| ! | ACCTTCTCTGAAGAATACCA+AGG | + | chr1.1:79747474-79747493 | MS.gene037276:CDS | 40.0% |
| ! | GATGTTCTTCTCCACCATTT+TGG | - | chr1.1:79746324-79746343 | None:intergenic | 40.0% |
| ! | TTTTCCCTGTCTCTTCATGT+AGG | + | chr1.1:79746344-79746363 | MS.gene037276:CDS | 40.0% |
| !! | AGACCTCTTGTTGGTTTGAA+TGG | + | chr1.1:79746097-79746116 | MS.gene037276:CDS | 40.0% |
| !! | AGGCACTGGAATCAAAACAT+GGG | - | chr1.1:79746757-79746776 | None:intergenic | 40.0% |
| !! | ATGGAGGCTTTGAACACTTT+AGG | + | chr1.1:79748317-79748336 | MS.gene037276:CDS | 40.0% |
| !! | TCATGGTGGATCATGAAGTA+GGG | + | chr1.1:79747247-79747266 | MS.gene037276:CDS | 40.0% |
| !! | TCTTGTTGGTTTGAATGGCT+GGG | + | chr1.1:79746102-79746121 | MS.gene037276:CDS | 40.0% |
| ATCATGCTCCTCTTCTGTGT+TGG | - | chr1.1:79747541-79747560 | None:intergenic | 45.0% | |
| CAAAGAACCTTGTTGCTGAG+AGG | + | chr1.1:79747733-79747752 | MS.gene037276:CDS | 45.0% | |
| CACGGAACAAATCTTCATGC+TGG | + | chr1.1:79748600-79748619 | MS.gene037276:CDS | 45.0% | |
| CAGCCATTCAAACCAACAAG+AGG | - | chr1.1:79746103-79746122 | None:intergenic | 45.0% | |
| GAATGGTTGGGATGTTGTTG+TGG | + | chr1.1:79746283-79746302 | MS.gene037276:CDS | 45.0% | |
| GATAGTTCAACCAATTGGGC+TGG | - | chr1.1:79746569-79746588 | None:intergenic | 45.0% | |
| GGGAGTGAAAGCAACCAAAA+TGG | + | chr1.1:79746307-79746326 | MS.gene037276:CDS | 45.0% | |
| GTAGGGATGAACCACTCAAT+TGG | + | chr1.1:79747264-79747283 | MS.gene037276:CDS | 45.0% | |
| GTATCCCTACATGAAGAGAC+AGG | - | chr1.1:79746352-79746371 | None:intergenic | 45.0% | |
| TGGAAGTGGCTCAGATAGAT+GGG | + | chr1.1:79748237-79748256 | MS.gene037276:CDS | 45.0% | |
| TTCTCTTCCTCTCAGCAACA+AGG | - | chr1.1:79747743-79747762 | None:intergenic | 45.0% | |
| TTGTTGCTGAGAGGAAGAGA+AGG | + | chr1.1:79747742-79747761 | MS.gene037276:CDS | 45.0% | |
| !! | CAGGCACTGGAATCAAAACA+TGG | - | chr1.1:79746758-79746777 | None:intergenic | 45.0% |
| !! | CTCTTGTTGGTTTGAATGGC+TGG | + | chr1.1:79746101-79746120 | MS.gene037276:CDS | 45.0% |
| !! | GGCTTTGAACACTTTAGGCA+TGG | + | chr1.1:79748322-79748341 | MS.gene037276:CDS | 45.0% |
| !! | GTCATGGTGGATCATGAAGT+AGG | + | chr1.1:79747246-79747265 | MS.gene037276:CDS | 45.0% |
| !!! | CATGTTTTGATTCCAGTGCC+TGG | + | chr1.1:79746756-79746775 | MS.gene037276:CDS | 45.0% |
| !!! | TGAAGGTGTTTTGTGAGCAC+AGG | + | chr1.1:79748273-79748292 | MS.gene037276:CDS | 45.0% |
| ATTGCAGGCACAAGTGGAAG+TGG | + | chr1.1:79748223-79748242 | MS.gene037276:intron | 50.0% | |
| GCCACAGTAACCAGTCACAA+GGG | + | chr1.1:79748356-79748375 | MS.gene037276:CDS | 50.0% | |
| GCTGGGATTACTGTGTCTAC+TGG | + | chr1.1:79746119-79746138 | MS.gene037276:CDS | 50.0% | |
| GGTTGGGATGTTGTTGTGGT+GGG | + | chr1.1:79746287-79746306 | MS.gene037276:CDS | 50.0% | |
| GTGGAAGTGGCTCAGATAGA+TGG | + | chr1.1:79748236-79748255 | MS.gene037276:CDS | 50.0% | |
| TGACAAGCAGACACAGCAGA+TGG | + | chr1.1:79748070-79748089 | MS.gene037276:CDS | 50.0% | |
| TGAGACAAGACCCTTGTGAC+TGG | - | chr1.1:79748369-79748388 | None:intergenic | 50.0% | |
| TGCCACAGTAACCAGTCACA+AGG | + | chr1.1:79748355-79748374 | MS.gene037276:CDS | 50.0% | |
| TGGTTGGGATGTTGTTGTGG+TGG | + | chr1.1:79746286-79746305 | MS.gene037276:CDS | 50.0% | |
| ! | ACCCTTGTGACTGGTTACTG+TGG | - | chr1.1:79748360-79748379 | None:intergenic | 50.0% |
| !!! | GTTTTGATTCCAGTGCCTGG+TGG | + | chr1.1:79746759-79746778 | MS.gene037276:CDS | 50.0% |
| AAGAGCTCAACGAGTCCACC+AGG | - | chr1.1:79746777-79746796 | None:intergenic | 55.0% | |
| CAAGCAGACACAGCAGATGG+AGG | + | chr1.1:79748073-79748092 | MS.gene037276:CDS | 55.0% | |
| ! | GTGTTTTGTGAGCACAGGCC+AGG | + | chr1.1:79748278-79748297 | MS.gene037276:CDS | 55.0% |
| ! | TTTTGTGAGCACAGGCCAGG+TGG | + | chr1.1:79748281-79748300 | MS.gene037276:CDS | 55.0% |
| TCAACGAGTCCACCAGGCAC+TGG | - | chr1.1:79746771-79746790 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 79746058 | 79748637 | 79746058 | ID=MS.gene037276 |
| chr1.1 | mRNA | 79746058 | 79748637 | 79746058 | ID=MS.gene037276.t1;Parent=MS.gene037276 |
| chr1.1 | exon | 79746058 | 79746161 | 79746058 | ID=MS.gene037276.t1.exon1;Parent=MS.gene037276.t1 |
| chr1.1 | CDS | 79746058 | 79746161 | 79746058 | ID=cds.MS.gene037276.t1;Parent=MS.gene037276.t1 |
| chr1.1 | exon | 79746276 | 79746446 | 79746276 | ID=MS.gene037276.t1.exon2;Parent=MS.gene037276.t1 |
| chr1.1 | CDS | 79746276 | 79746446 | 79746276 | ID=cds.MS.gene037276.t1;Parent=MS.gene037276.t1 |
| chr1.1 | exon | 79746539 | 79746617 | 79746539 | ID=MS.gene037276.t1.exon3;Parent=MS.gene037276.t1 |
| chr1.1 | CDS | 79746539 | 79746617 | 79746539 | ID=cds.MS.gene037276.t1;Parent=MS.gene037276.t1 |
| chr1.1 | exon | 79746738 | 79746809 | 79746738 | ID=MS.gene037276.t1.exon4;Parent=MS.gene037276.t1 |
| chr1.1 | CDS | 79746738 | 79746809 | 79746738 | ID=cds.MS.gene037276.t1;Parent=MS.gene037276.t1 |
| chr1.1 | exon | 79747198 | 79748094 | 79747198 | ID=MS.gene037276.t1.exon5;Parent=MS.gene037276.t1 |
| chr1.1 | CDS | 79747198 | 79748094 | 79747198 | ID=cds.MS.gene037276.t1;Parent=MS.gene037276.t1 |
| chr1.1 | exon | 79748230 | 79748406 | 79748230 | ID=MS.gene037276.t1.exon6;Parent=MS.gene037276.t1 |
| chr1.1 | CDS | 79748230 | 79748406 | 79748230 | ID=cds.MS.gene037276.t1;Parent=MS.gene037276.t1 |
| chr1.1 | exon | 79748542 | 79748637 | 79748542 | ID=MS.gene037276.t1.exon7;Parent=MS.gene037276.t1 |
| chr1.1 | CDS | 79748542 | 79748637 | 79748542 | ID=cds.MS.gene037276.t1;Parent=MS.gene037276.t1 |
| Gene Sequence |
| Protein sequence |