Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037329.t1 | AES62949.2 | 91.6 | 924 | 77 | 1 | 1 | 923 | 1 | 924 | 0.00E+00 | 1665.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037329.t1 | Q9SSE9 | 45.9 | 817 | 372 | 9 | 149 | 913 | 85 | 883 | 4.4e-196 | 686.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037329.t1 | G7IE64 | 91.6 | 924 | 77 | 1 | 1 | 923 | 1 | 924 | 0.0e+00 | 1665.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene037329.t1 | TR | Jumonji |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037329.t1 | MTR_1g114070 | 93.615 | 924 | 58 | 1 | 1 | 923 | 1 | 924 | 0.0 | 1709 |
MS.gene037329.t1 | MTR_1g114150 | 68.813 | 792 | 233 | 5 | 143 | 923 | 262 | 1050 | 0.0 | 1112 |
MS.gene037329.t1 | MTR_1g114150 | 49.693 | 163 | 60 | 5 | 42 | 195 | 7 | 156 | 3.20e-25 | 113 |
MS.gene037329.t1 | MTR_1g114130 | 67.702 | 805 | 241 | 7 | 135 | 923 | 237 | 1038 | 0.0 | 1097 |
MS.gene037329.t1 | MTR_1g114130 | 63.131 | 198 | 65 | 2 | 1 | 194 | 1 | 194 | 4.50e-58 | 217 |
MS.gene037329.t1 | MTR_1g069565 | 60.421 | 902 | 285 | 10 | 69 | 923 | 5 | 881 | 0.0 | 1044 |
MS.gene037329.t1 | MTR_5g065200 | 69.565 | 713 | 208 | 3 | 213 | 923 | 129 | 834 | 0.0 | 1008 |
MS.gene037329.t1 | MTR_1g069565 | 56.100 | 959 | 292 | 13 | 69 | 923 | 5 | 938 | 0.0 | 991 |
MS.gene037329.t1 | MTR_1g114150 | 67.254 | 681 | 209 | 5 | 143 | 812 | 262 | 939 | 0.0 | 925 |
MS.gene037329.t1 | MTR_1g114150 | 49.693 | 163 | 60 | 5 | 42 | 195 | 7 | 156 | 3.71e-25 | 113 |
MS.gene037329.t1 | MTR_5g047620 | 63.063 | 666 | 209 | 8 | 288 | 923 | 139 | 797 | 0.0 | 834 |
MS.gene037329.t1 | MTR_0020s0100 | 60.254 | 629 | 222 | 10 | 288 | 906 | 81 | 691 | 0.0 | 752 |
MS.gene037329.t1 | MTR_2g024270 | 46.591 | 704 | 330 | 11 | 224 | 921 | 154 | 817 | 0.0 | 592 |
MS.gene037329.t1 | MTR_4g132540 | 43.514 | 740 | 333 | 15 | 224 | 921 | 168 | 864 | 0.0 | 585 |
MS.gene037329.t1 | MTR_2g024140 | 44.681 | 705 | 330 | 13 | 224 | 921 | 34 | 685 | 0.0 | 561 |
MS.gene037329.t1 | MTR_7g117445 | 43.214 | 641 | 330 | 12 | 139 | 752 | 43 | 676 | 1.06e-157 | 485 |
MS.gene037329.t1 | MTR_7g117445 | 65.591 | 93 | 32 | 0 | 770 | 862 | 773 | 865 | 3.97e-33 | 138 |
MS.gene037329.t1 | MTR_7g117445 | 43.214 | 641 | 330 | 12 | 139 | 752 | 43 | 676 | 1.49e-157 | 487 |
MS.gene037329.t1 | MTR_7g117445 | 61.438 | 153 | 59 | 0 | 770 | 922 | 773 | 925 | 4.91e-55 | 207 |
MS.gene037329.t1 | MTR_7g117445 | 43.214 | 641 | 330 | 12 | 139 | 752 | 43 | 676 | 2.27e-157 | 486 |
MS.gene037329.t1 | MTR_7g117445 | 61.438 | 153 | 59 | 0 | 770 | 922 | 773 | 925 | 5.50e-55 | 206 |
MS.gene037329.t1 | MTR_7g117445 | 43.214 | 641 | 330 | 12 | 139 | 752 | 43 | 676 | 6.14e-157 | 486 |
MS.gene037329.t1 | MTR_7g117445 | 61.438 | 153 | 59 | 0 | 770 | 922 | 773 | 925 | 5.74e-55 | 207 |
MS.gene037329.t1 | MTR_1g083120 | 35.135 | 740 | 394 | 11 | 224 | 922 | 198 | 892 | 1.26e-149 | 466 |
MS.gene037329.t1 | MTR_1g083120 | 35.135 | 740 | 394 | 11 | 224 | 922 | 215 | 909 | 1.97e-149 | 466 |
MS.gene037329.t1 | MTR_1g008060 | 45.386 | 531 | 250 | 10 | 224 | 748 | 861 | 1357 | 1.77e-132 | 436 |
MS.gene037329.t1 | MTR_1g008060 | 68.382 | 136 | 43 | 0 | 777 | 912 | 1542 | 1677 | 2.60e-54 | 206 |
MS.gene037329.t1 | MTR_1g008060 | 45.386 | 531 | 250 | 10 | 224 | 748 | 870 | 1366 | 1.91e-132 | 436 |
MS.gene037329.t1 | MTR_1g008060 | 68.382 | 136 | 43 | 0 | 777 | 912 | 1551 | 1686 | 2.50e-54 | 206 |
MS.gene037329.t1 | MTR_1g083120 | 34.343 | 693 | 368 | 12 | 224 | 874 | 198 | 845 | 7.86e-131 | 414 |
MS.gene037329.t1 | MTR_1g083120 | 34.604 | 682 | 360 | 11 | 224 | 864 | 198 | 834 | 9.29e-131 | 414 |
MS.gene037329.t1 | MTR_2g011630 | 34.570 | 755 | 414 | 16 | 224 | 913 | 207 | 946 | 4.30e-127 | 407 |
MS.gene037329.t1 | MTR_8g062940 | 52.989 | 368 | 142 | 3 | 224 | 591 | 33 | 369 | 1.11e-120 | 372 |
MS.gene037329.t1 | MTR_2g011630 | 34.226 | 672 | 364 | 13 | 306 | 913 | 45 | 702 | 2.24e-111 | 359 |
MS.gene037329.t1 | MTR_2g011630 | 33.965 | 686 | 373 | 14 | 293 | 913 | 64 | 734 | 4.08e-111 | 359 |
MS.gene037329.t1 | MTR_4g091520 | 36.250 | 560 | 265 | 13 | 446 | 922 | 727 | 1277 | 7.21e-100 | 340 |
MS.gene037329.t1 | MTR_4g091520 | 37.143 | 175 | 100 | 4 | 224 | 389 | 260 | 433 | 4.57e-28 | 122 |
MS.gene037329.t1 | MTR_2g024240 | 54.325 | 289 | 116 | 3 | 600 | 886 | 114 | 388 | 1.80e-98 | 314 |
MS.gene037329.t1 | MTR_4g091520 | 41.892 | 296 | 163 | 5 | 446 | 738 | 657 | 946 | 4.63e-61 | 226 |
MS.gene037329.t1 | MTR_4g091520 | 37.143 | 175 | 100 | 4 | 224 | 389 | 260 | 433 | 4.63e-28 | 122 |
MS.gene037329.t1 | MTR_4g091520 | 41.892 | 296 | 163 | 5 | 446 | 738 | 692 | 981 | 4.63e-61 | 226 |
MS.gene037329.t1 | MTR_4g091520 | 37.143 | 175 | 100 | 4 | 224 | 389 | 260 | 433 | 3.99e-28 | 122 |
MS.gene037329.t1 | MTR_4g091520 | 41.892 | 296 | 163 | 5 | 446 | 738 | 727 | 1016 | 5.36e-61 | 226 |
MS.gene037329.t1 | MTR_4g091520 | 37.143 | 175 | 100 | 4 | 224 | 389 | 260 | 433 | 4.38e-28 | 122 |
MS.gene037329.t1 | MTR_0295s0020 | 60.000 | 170 | 65 | 1 | 590 | 756 | 11 | 180 | 3.27e-60 | 203 |
MS.gene037329.t1 | MTR_8g465700 | 53.933 | 178 | 78 | 2 | 535 | 712 | 4 | 177 | 1.60e-53 | 188 |
MS.gene037329.t1 | MTR_6g051900 | 58.219 | 146 | 47 | 3 | 1 | 138 | 1 | 140 | 4.38e-39 | 142 |
MS.gene037329.t1 | MTR_8g465720 | 67.416 | 89 | 28 | 1 | 776 | 864 | 52 | 139 | 5.45e-35 | 131 |
MS.gene037329.t1 | MTR_5g098590 | 54.762 | 168 | 51 | 6 | 41 | 202 | 3 | 151 | 4.08e-34 | 128 |
MS.gene037329.t1 | MTR_8g013920 | 54.930 | 142 | 41 | 4 | 625 | 762 | 40 | 162 | 1.20e-32 | 125 |
MS.gene037329.t1 | MTR_1g114110 | 53.261 | 92 | 35 | 2 | 55 | 138 | 1 | 92 | 1.48e-17 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037329.t1 | AT1G11950 | 48.442 | 706 | 336 | 11 | 219 | 921 | 188 | 868 | 0.0 | 646 |
MS.gene037329.t1 | AT1G11950 | 48.442 | 706 | 336 | 11 | 219 | 921 | 188 | 868 | 0.0 | 646 |
MS.gene037329.t1 | AT1G62310 | 49.062 | 693 | 331 | 10 | 223 | 910 | 208 | 883 | 0.0 | 640 |
MS.gene037329.t1 | AT1G11950 | 47.261 | 639 | 309 | 11 | 219 | 854 | 188 | 801 | 0.0 | 558 |
MS.gene037329.t1 | AT3G07610 | 56.994 | 479 | 195 | 4 | 436 | 913 | 415 | 883 | 6.19e-177 | 540 |
MS.gene037329.t1 | AT3G07610 | 35.540 | 287 | 175 | 3 | 133 | 410 | 55 | 340 | 1.32e-47 | 184 |
MS.gene037329.t1 | AT3G07610 | 54.618 | 498 | 199 | 5 | 436 | 913 | 415 | 905 | 1.81e-168 | 519 |
MS.gene037329.t1 | AT3G07610 | 35.540 | 287 | 175 | 3 | 133 | 410 | 55 | 340 | 1.55e-47 | 184 |
MS.gene037329.t1 | AT4G00990 | 40.992 | 605 | 313 | 14 | 155 | 740 | 2 | 581 | 3.29e-135 | 424 |
MS.gene037329.t1 | AT4G00990 | 65.517 | 87 | 30 | 0 | 776 | 862 | 684 | 770 | 3.04e-30 | 129 |
MS.gene037329.t1 | AT4G00990 | 40.992 | 605 | 313 | 14 | 155 | 740 | 2 | 581 | 4.06e-135 | 423 |
MS.gene037329.t1 | AT4G00990 | 61.053 | 95 | 37 | 0 | 776 | 870 | 684 | 778 | 1.52e-30 | 129 |
MS.gene037329.t1 | AT4G00990 | 40.992 | 605 | 313 | 14 | 155 | 740 | 2 | 581 | 1.14e-134 | 424 |
MS.gene037329.t1 | AT4G00990 | 61.379 | 145 | 56 | 0 | 776 | 920 | 684 | 828 | 6.91e-52 | 196 |
MS.gene037329.t1 | AT1G09060 | 30.641 | 842 | 502 | 15 | 115 | 922 | 98 | 891 | 2.04e-120 | 389 |
MS.gene037329.t1 | AT1G09060 | 30.641 | 842 | 502 | 15 | 115 | 922 | 98 | 891 | 2.04e-120 | 389 |
MS.gene037329.t1 | AT1G09060 | 30.641 | 842 | 502 | 15 | 115 | 922 | 112 | 905 | 2.71e-120 | 389 |
MS.gene037329.t1 | AT1G09060 | 30.641 | 842 | 502 | 15 | 115 | 922 | 112 | 905 | 2.71e-120 | 389 |
MS.gene037329.t1 | AT3G07610 | 56.890 | 283 | 115 | 2 | 436 | 718 | 415 | 690 | 3.84e-94 | 314 |
MS.gene037329.t1 | AT3G07610 | 35.540 | 287 | 175 | 3 | 133 | 410 | 55 | 340 | 1.02e-47 | 183 |
MS.gene037329.t1 | AT4G21430 | 34.642 | 433 | 244 | 5 | 521 | 920 | 485 | 911 | 1.84e-79 | 277 |
MS.gene037329.t1 | AT4G21430 | 29.299 | 157 | 108 | 3 | 224 | 378 | 227 | 382 | 1.23e-11 | 69.3 |
Find 215 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTAGATATTCTTTCAATT+TGG | 0.093161 | 1.2:-84059566 | None:intergenic |
GCCGATTCTACCTGCTTTAA+AGG | 0.132025 | 1.2:-84059625 | None:intergenic |
ATATCACTCTCTTTCAATTT+AGG | 0.147719 | 1.2:-84055833 | None:intergenic |
GCCTCCTTCTGATTTATTTC+AGG | 0.172247 | 1.2:+84058614 | MS.gene037329:CDS |
AACCAAAACTACATCGTATT+TGG | 0.218834 | 1.2:-84057064 | None:intergenic |
AAATCATACTCAAGCTTAAT+TGG | 0.220679 | 1.2:-84056499 | None:intergenic |
TCACATTCATTATCAGCTTT+TGG | 0.248622 | 1.2:-84056661 | None:intergenic |
GGATTTGTGTATTCTTTATA+AGG | 0.268369 | 1.2:-84058678 | None:intergenic |
GTCGCAGCGATTGGCTTAAA+TGG | 0.273010 | 1.2:+84058565 | MS.gene037329:CDS |
AGTACATTGCTGACAATTAC+AGG | 0.278275 | 1.2:-84056973 | None:intergenic |
CCAAGAACATATATTGCTTA+TGG | 0.280860 | 1.2:+84058765 | MS.gene037329:CDS |
ATCCCAGAGAGCACCTTCTA+AGG | 0.286251 | 1.2:-84059521 | None:intergenic |
TGTCATTTCTTTGACATTGA+TGG | 0.286327 | 1.2:-84055544 | None:intergenic |
CTCCAAATACGATGTAGTTT+TGG | 0.286573 | 1.2:+84057062 | MS.gene037329:CDS |
CTCCGTGGTGGGAAGCTTCT+AGG | 0.287089 | 1.2:+84056466 | MS.gene037329:CDS |
TCTAGATATTCTTTCAATTT+GGG | 0.290597 | 1.2:-84059565 | None:intergenic |
ACTAACTCAGAGATGCAATT+TGG | 0.317312 | 1.2:-84056718 | None:intergenic |
CGACAGCGACACCACCGTTT+TGG | 0.322177 | 1.2:-84055062 | None:intergenic |
TCAGACCATTTATCTGAATA+TGG | 0.327236 | 1.2:+84060091 | MS.gene037329:CDS |
CCATAAGCAATATATGTTCT+TGG | 0.328103 | 1.2:-84058765 | None:intergenic |
CAACCTTGCTGTGAAGTTGC+CGG | 0.339593 | 1.2:+84058716 | MS.gene037329:CDS |
ATGCTCCATATTCAGATAAA+TGG | 0.340188 | 1.2:-84060096 | None:intergenic |
AGGGATGCAGAAGCGTTGTT+AGG | 0.362991 | 1.2:+84055229 | MS.gene037329:CDS |
ATGAAACTTAAGAAAGAGTA+TGG | 0.363484 | 1.2:+84060122 | MS.gene037329:CDS |
ATTCGTGAGTGGTCAAGATC+TGG | 0.381498 | 1.2:+84056604 | MS.gene037329:CDS |
ATCCCTTAGAAGGTGCTCTC+TGG | 0.383194 | 1.2:+84059518 | MS.gene037329:CDS |
CTAAAGATGAGCGTGTGTTC+TGG | 0.394804 | 1.2:+84056276 | MS.gene037329:CDS |
CTCAAAGCTAAATATAAAAC+CGG | 0.396606 | 1.2:+84056244 | MS.gene037329:CDS |
CTCAACCTCCTCCTCGTTGT+TGG | 0.396999 | 1.2:-84056037 | None:intergenic |
GTTCTTGCTCGAAACCTGTT+AGG | 0.397008 | 1.2:+84056809 | MS.gene037329:CDS |
TAGAGGAGACTCGTGATAAT+AGG | 0.397753 | 1.2:+84056785 | MS.gene037329:CDS |
TGATCAGGAATGGGTTCATC+TGG | 0.401180 | 1.2:-84054848 | None:intergenic |
ATCCTCCAACGGTACCGTTT+CGG | 0.404627 | 1.2:-84054909 | None:intergenic |
ATATCATCGGTGTACCTAAC+AGG | 0.407455 | 1.2:-84056823 | None:intergenic |
AGGCAGTTAATTGTTTAGAT+TGG | 0.408112 | 1.2:+84057091 | MS.gene037329:CDS |
TTCAATGGCACTGGAGCAAA+GGG | 0.413215 | 1.2:+84056947 | MS.gene037329:CDS |
TATGTTCTTGGCCCCATGTC+AGG | 0.417723 | 1.2:-84058753 | None:intergenic |
AATATCCACCAATTCTTCAC+TGG | 0.420686 | 1.2:+84058531 | MS.gene037329:CDS |
GACGATGAAGGTTCGGTTGA+AGG | 0.422097 | 1.2:+84055088 | MS.gene037329:CDS |
AGGTTGAGAGAACCACTAAA+AGG | 0.429360 | 1.2:-84058699 | None:intergenic |
CAGAAATTGAAAAGATGAAG+AGG | 0.429960 | 1.2:+84055209 | MS.gene037329:CDS |
CGAGGTCGCAATTATCTACA+TGG | 0.434006 | 1.2:+84056523 | MS.gene037329:CDS |
AATGTACTTGAATGCACATC+TGG | 0.441844 | 1.2:+84056988 | MS.gene037329:CDS |
TTTGTCTCTCCCGAACATAT+TGG | 0.442105 | 1.2:+84061681 | MS.gene037329:CDS |
AGGCTCTTCATCATTTCAAC+TGG | 0.442693 | 1.2:+84055294 | MS.gene037329:CDS |
GGAATGGGTTCATCTGGATC+AGG | 0.444988 | 1.2:-84054842 | None:intergenic |
GCAGCGGATCTGTGATTTAT+CGG | 0.450090 | 1.2:-84061741 | None:intergenic |
AACAGAATAAAGGAAGAAAC+TGG | 0.451192 | 1.2:+84055253 | MS.gene037329:CDS |
GTTGGAGAGGATCCCTTAGA+AGG | 0.451802 | 1.2:+84059508 | MS.gene037329:CDS |
GAAGCACTCACCAATATGTT+CGG | 0.452411 | 1.2:-84061691 | None:intergenic |
TACCGTTTCGGCGCCAACAT+TGG | 0.457827 | 1.2:-84054897 | None:intergenic |
TTCTTCACTGGGTACACAAA+TGG | 0.460684 | 1.2:+84058543 | MS.gene037329:CDS |
CGCCGAAACGGTACCGTTGG+AGG | 0.461207 | 1.2:+84054907 | MS.gene037329:CDS |
TCTTCCACATTTAAGACGGT+TGG | 0.461419 | 1.2:+84056086 | MS.gene037329:CDS |
GAAGTATCCTTCTCAGTTCA+AGG | 0.464781 | 1.2:-84056693 | None:intergenic |
AGCACCTTGAGCAAGATAAG+AGG | 0.465265 | 1.2:+84059413 | MS.gene037329:CDS |
TTAATGACACTAATTTCCTC+AGG | 0.465562 | 1.2:-84059376 | None:intergenic |
GGCCAATGTTGGCGCCGAAA+CGG | 0.467500 | 1.2:+84054895 | MS.gene037329:CDS |
TTACCTTCAGATTTCTGACT+TGG | 0.467821 | 1.2:-84060310 | None:intergenic |
AATGCACATCTGGTTTAAGC+TGG | 0.467845 | 1.2:+84056998 | MS.gene037329:CDS |
TCTTTCAATTTCAACACCTC+AGG | 0.472947 | 1.2:-84058588 | None:intergenic |
GTTTCTCGATGATCATGATC+AGG | 0.474522 | 1.2:-84054863 | None:intergenic |
ATTTGGAGTTGGTTATTTGA+CGG | 0.476343 | 1.2:-84057047 | None:intergenic |
TTGTGTACCCAGTGAAGAAT+TGG | 0.478196 | 1.2:-84058539 | None:intergenic |
TTAAGTTTCTTGTGGACTTG+TGG | 0.479397 | 1.2:-84055376 | None:intergenic |
GACTTGTAGGAATTGAGCCT+TGG | 0.481982 | 1.2:+84060234 | MS.gene037329:intron |
ATCCGCTGCGGACAAGTTTG+AGG | 0.482235 | 1.2:+84061755 | MS.gene037329:CDS |
ACACAAATGGTCGCAGCGAT+TGG | 0.484713 | 1.2:+84058556 | MS.gene037329:CDS |
AGCTGAAACGTCGTCGTTGA+AGG | 0.484777 | 1.2:+84054961 | MS.gene037329:CDS |
CGATGATCATGATCAGGAAT+GGG | 0.491693 | 1.2:-84054857 | None:intergenic |
AGGTGATAACATTGCAGCTA+GGG | 0.495234 | 1.2:+84055108 | MS.gene037329:CDS |
TCGATGATCATGATCAGGAA+TGG | 0.497827 | 1.2:-84054858 | None:intergenic |
TCCCTTAGAAGGTGCTCTCT+GGG | 0.498565 | 1.2:+84059519 | MS.gene037329:CDS |
ATCAAGTGCAACCTTGATGC+AGG | 0.498619 | 1.2:-84061658 | None:intergenic |
GTTGTTAGGGAACAGAATAA+AGG | 0.500566 | 1.2:+84055243 | MS.gene037329:CDS |
CACATCAAGCATAGCATGTA+CGG | 0.501504 | 1.2:-84062385 | None:intergenic |
ATCAATGTCAAAGAAATGAC+AGG | 0.501804 | 1.2:+84055546 | MS.gene037329:CDS |
GAGACGCGGCAGAAAGAGAA+AGG | 0.502047 | 1.2:+84055324 | MS.gene037329:CDS |
TGCGGAATTCCTCTGTCAAA+CGG | 0.503979 | 1.2:-84061713 | None:intergenic |
GCACATCATGTATACAAAAG+TGG | 0.504161 | 1.2:+84055612 | MS.gene037329:CDS |
GTCGAAGGACGATGAAGGTT+CGG | 0.505191 | 1.2:+84055081 | MS.gene037329:CDS |
AGGTGTTGAAATTGAAAGAT+TGG | 0.508050 | 1.2:+84058592 | MS.gene037329:CDS |
AGGGATCCTCTCCAACCATC+AGG | 0.508501 | 1.2:-84059501 | None:intergenic |
AACTACATCGTATTTGGAGT+TGG | 0.509194 | 1.2:-84057058 | None:intergenic |
GGGATGCAGAAGCGTTGTTA+GGG | 0.509891 | 1.2:+84055230 | MS.gene037329:CDS |
TTTCAATGGCACTGGAGCAA+AGG | 0.515097 | 1.2:+84056946 | MS.gene037329:CDS |
GTTGACTCATATCGCTAAAG+TGG | 0.516636 | 1.2:+84059345 | MS.gene037329:CDS |
ACTGGTAAAGATGTGGTAGC+TGG | 0.518953 | 1.2:+84055271 | MS.gene037329:CDS |
TCAGGCTTTACACAATAATC+CGG | 0.522487 | 1.2:-84058735 | None:intergenic |
CGCAGCAACAGAGGAGACAA+AGG | 0.527535 | 1.2:-84056441 | None:intergenic |
AAGCACTCACCAATATGTTC+GGG | 0.527844 | 1.2:-84061690 | None:intergenic |
GCTGATAATGAATGTGATCA+TGG | 0.528933 | 1.2:+84056667 | MS.gene037329:CDS |
TCTGTTGCAGTCCTGCATCA+AGG | 0.530126 | 1.2:+84061647 | MS.gene037329:intron |
TGAAGAACAAATGATTGAGA+AGG | 0.530667 | 1.2:+84056110 | MS.gene037329:CDS |
AAGAGGGAGCTACATGGTGA+TGG | 0.531116 | 1.2:+84059430 | MS.gene037329:CDS |
GTTGCTGCGAGCTCCGTGGT+GGG | 0.531732 | 1.2:+84056455 | MS.gene037329:CDS |
GATAAATGGTCTGATCATGA+AGG | 0.531871 | 1.2:-84060082 | None:intergenic |
AGAGGGAGCTACATGGTGAT+GGG | 0.532113 | 1.2:+84059431 | MS.gene037329:CDS |
ATGGTTTCCTTGAACTGAGA+AGG | 0.533086 | 1.2:+84056686 | MS.gene037329:CDS |
CAAACCAGCAGGAATGAAAA+CGG | 0.534926 | 1.2:-84060282 | None:intergenic |
GCTACATGGTGATGGGGAGG+CGG | 0.535164 | 1.2:+84059438 | MS.gene037329:CDS |
TGTGTATTCTTTATAAGGCA+AGG | 0.535177 | 1.2:-84058673 | None:intergenic |
TATGGATTTACTCAAAATCT+CGG | 0.535793 | 1.2:+84058783 | MS.gene037329:CDS |
TATAGGAATACCTCGTCTCC+TGG | 0.539286 | 1.2:-84056142 | None:intergenic |
TATGCATGTTGGCGCCAAAA+CGG | 0.540397 | 1.2:+84055048 | MS.gene037329:CDS |
AACGGTGGTGTCGCTGTCGA+AGG | 0.540573 | 1.2:+84055066 | MS.gene037329:CDS |
TGTGTTATTGTGTATATCAT+CGG | 0.540704 | 1.2:-84056836 | None:intergenic |
TTCGTGAGTGGTCAAGATCT+GGG | 0.542666 | 1.2:+84056605 | MS.gene037329:CDS |
CAATTGCATTCCTTTAAAGC+AGG | 0.542700 | 1.2:+84059615 | MS.gene037329:CDS |
TCGGCGCCAACATTGGCCGT+AGG | 0.543112 | 1.2:-84054890 | None:intergenic |
GCTCCCTCTTATCTTGCTCA+AGG | 0.544578 | 1.2:-84059417 | None:intergenic |
ACTTGGTGAGGCAAACCAGC+AGG | 0.547834 | 1.2:-84060293 | None:intergenic |
GCACCTTGAGCAAGATAAGA+GGG | 0.549030 | 1.2:+84059414 | MS.gene037329:CDS |
TTAGATGCACAAAATGCAAA+CGG | 0.550175 | 1.2:+84055579 | MS.gene037329:CDS |
TCCCAGAGAGCACCTTCTAA+GGG | 0.550365 | 1.2:-84059520 | None:intergenic |
TCATCCAACCGTCTTAAATG+TGG | 0.550657 | 1.2:-84056090 | None:intergenic |
AACTCAGAGATGCAATTTGG+AGG | 0.551495 | 1.2:-84056715 | None:intergenic |
TGGTGTAGATCTACAGCCCT+TGG | 0.555022 | 1.2:-84056907 | None:intergenic |
TTGACATTGATGGCACATTG+AGG | 0.559359 | 1.2:-84055534 | None:intergenic |
GTGGCACAAGCTATCGGTGT+TGG | 0.561909 | 1.2:+84054938 | MS.gene037329:CDS |
TGTTGCTGCGAGCTCCGTGG+TGG | 0.562600 | 1.2:+84056454 | MS.gene037329:CDS |
ATATCCACCAATTCTTCACT+GGG | 0.564592 | 1.2:+84058532 | MS.gene037329:CDS |
TTCTCTAAGTATCTGCTGAA+AGG | 0.564863 | 1.2:+84056060 | MS.gene037329:CDS |
TTCAGATTTCTGACTTGGTG+AGG | 0.565040 | 1.2:-84060305 | None:intergenic |
GACTTCTTCCACATTTAAGA+CGG | 0.566290 | 1.2:+84056082 | MS.gene037329:CDS |
AGAAATTGAAAAGATGAAGA+GGG | 0.567266 | 1.2:+84055210 | MS.gene037329:CDS |
TGTACCCAGTGAAGAATTGG+TGG | 0.567688 | 1.2:-84058536 | None:intergenic |
ATTTGAAATTTCAATGGCGG+AGG | 0.570807 | 1.2:+84054763 | None:intergenic |
AAGGTGATAACATTGCAGCT+AGG | 0.571180 | 1.2:+84055107 | MS.gene037329:CDS |
ACACAACCTACGGCCAATGT+TGG | 0.573109 | 1.2:+84054884 | MS.gene037329:CDS |
ACAGCACACAGGGCATGCCT+TGG | 0.575809 | 1.2:-84055858 | None:intergenic |
CAAGATAAGAGGGAGCTACA+TGG | 0.577423 | 1.2:+84059424 | MS.gene037329:CDS |
ATGCACATCTGGTTTAAGCT+GGG | 0.577804 | 1.2:+84056999 | MS.gene037329:CDS |
TGTCAAAGAAATGACAGGGC+CGG | 0.578080 | 1.2:+84055551 | MS.gene037329:CDS |
CAACTCTCTGACACTAATGA+TGG | 0.579184 | 1.2:+84059475 | MS.gene037329:CDS |
CGCCGCCGCAGCTTTAGCAG+AGG | 0.580166 | 1.2:-84055137 | None:intergenic |
CACGGAGCTCGCAGCAACAG+AGG | 0.580415 | 1.2:-84056450 | None:intergenic |
GGAGCTACATGGTGATGGGG+AGG | 0.581361 | 1.2:+84059435 | MS.gene037329:CDS |
TGCAATTATCACAGCACACA+GGG | 0.584315 | 1.2:-84055868 | None:intergenic |
ACTATAGGAAATGAAGCGTA+AGG | 0.584966 | 1.2:+84056008 | MS.gene037329:intron |
GGTGACGTGGCACAAGCTAT+CGG | 0.585670 | 1.2:+84054932 | MS.gene037329:CDS |
ATAAATGGTCTGATCATGAA+GGG | 0.587122 | 1.2:-84060081 | None:intergenic |
CATCATTAGTGTCAGAGAGT+TGG | 0.587536 | 1.2:-84059474 | None:intergenic |
AATCAAGCTTCAAGATGTAG+AGG | 0.589159 | 1.2:+84056768 | MS.gene037329:CDS |
TATTGTGTAAAGCCTGACAT+GGG | 0.589216 | 1.2:+84058741 | MS.gene037329:CDS |
TGAAACCAACAACGAGGAGG+AGG | 0.589775 | 1.2:+84056032 | MS.gene037329:CDS |
AGTTCCTGAAATAAATCAGA+AGG | 0.590173 | 1.2:-84058618 | None:intergenic |
GAATGGGTTCATCTGGATCA+GGG | 0.590909 | 1.2:-84054841 | None:intergenic |
CACTAATGATGGTGACCTGA+TGG | 0.592137 | 1.2:+84059486 | MS.gene037329:CDS |
TGGACAAGGAATGCTACCAT+CGG | 0.593451 | 1.2:-84056641 | None:intergenic |
GCAATTGCAAAGCATGCTTG+CGG | 0.593478 | 1.2:+84055888 | MS.gene037329:CDS |
TGGCGCCGAAACGGTACCGT+TGG | 0.594492 | 1.2:+84054904 | MS.gene037329:CDS |
AATCAGCGAGAGTAATGCTA+AGG | 0.594627 | 1.2:+84055399 | MS.gene037329:CDS |
TTGAGAAGGAAAGAGAAGCC+AGG | 0.596035 | 1.2:+84056124 | MS.gene037329:CDS |
GAAAGAGAAGCCAGGAGACG+AGG | 0.596795 | 1.2:+84056132 | MS.gene037329:CDS |
AATGATGGTGACCTGATGGT+TGG | 0.598278 | 1.2:+84059490 | MS.gene037329:CDS |
AACTTCTGAATAAAAGTCCA+AGG | 0.598579 | 1.2:-84060251 | None:intergenic |
AGAAAGTGTATCACATGCAG+AGG | 0.606509 | 1.2:+84056570 | MS.gene037329:CDS |
CACCTAGAAGCTTCCCACCA+CGG | 0.608942 | 1.2:-84056468 | None:intergenic |
TCATCGAGAAACACAACCTA+CGG | 0.610549 | 1.2:+84054874 | MS.gene037329:CDS |
GGGTTCATCTGGATCAGGGA+GGG | 0.610921 | 1.2:-84054837 | None:intergenic |
TGTGATTTATCGGAAGCTTG+CGG | 0.611620 | 1.2:-84061731 | None:intergenic |
GGAAGAAACTGGTAAAGATG+TGG | 0.613492 | 1.2:+84055264 | MS.gene037329:CDS |
GAAACGGTACCGTTGGAGGA+TGG | 0.613747 | 1.2:+84054911 | MS.gene037329:CDS |
TTATTGTGTAAAGCCTGACA+TGG | 0.616770 | 1.2:+84058740 | MS.gene037329:CDS |
CTCTGTTGCTGCGAGCTCCG+TGG | 0.620459 | 1.2:+84056451 | MS.gene037329:CDS |
TTGCAATTATCACAGCACAC+AGG | 0.625183 | 1.2:-84055869 | None:intergenic |
GAAAGAGAGTGATATTGCCA+AGG | 0.625820 | 1.2:+84055841 | MS.gene037329:CDS |
TCGCTGTCGAAGGACGATGA+AGG | 0.626327 | 1.2:+84055076 | MS.gene037329:CDS |
TCCTGAAATAAATCAGAAGG+AGG | 0.633909 | 1.2:-84058615 | None:intergenic |
TATACACAATAACACAAGGA+AGG | 0.636388 | 1.2:+84056843 | MS.gene037329:CDS |
ATCCTCTGCTAAAGCTGCGG+CGG | 0.638471 | 1.2:+84055135 | MS.gene037329:CDS |
TCACCAAGTCAGAAATCTGA+AGG | 0.640211 | 1.2:+84060307 | MS.gene037329:CDS |
CGTACATGCTATGCTTGATG+TGG | 0.642539 | 1.2:+84062386 | MS.gene037329:CDS |
AACCTCAAACTTGTCCGCAG+CGG | 0.644100 | 1.2:-84061757 | None:intergenic |
AATGCACGCCACATGACTAG+TGG | 0.646851 | 1.2:-84057024 | None:intergenic |
ACCGTTGGAGGATGGTGACG+TGG | 0.648574 | 1.2:+84054919 | MS.gene037329:CDS |
GGTAAAGATGTGGTAGCTGG+AGG | 0.648889 | 1.2:+84055274 | MS.gene037329:CDS |
TTCATCCTCTGCTAAAGCTG+CGG | 0.652304 | 1.2:+84055132 | MS.gene037329:CDS |
TCATCTTTAGAATAATCCGC+CGG | 0.653440 | 1.2:-84056263 | None:intergenic |
GAGGGAGCTACATGGTGATG+GGG | 0.656552 | 1.2:+84059432 | MS.gene037329:CDS |
CGTGGTGGGAAGCTTCTAGG+TGG | 0.658159 | 1.2:+84056469 | MS.gene037329:CDS |
TAATTGTTTAGATTGGTGTG+AGG | 0.659042 | 1.2:+84057098 | MS.gene037329:CDS |
TAAATGGTCTGATCATGAAG+GGG | 0.660847 | 1.2:-84060080 | None:intergenic |
GCGGCGGCGATAATGAAATG+CGG | 0.661761 | 1.2:+84055151 | MS.gene037329:CDS |
AAAGCTAAATATAAAACCGG+CGG | 0.661902 | 1.2:+84056247 | MS.gene037329:CDS |
TGAGTGCTTCCGTTTGACAG+AGG | 0.665002 | 1.2:+84061704 | MS.gene037329:CDS |
GCCACGTCACCATCCTCCAA+CGG | 0.665173 | 1.2:-84054920 | None:intergenic |
AATCCGGCAACTTCACAGCA+AGG | 0.666731 | 1.2:-84058719 | None:intergenic |
TAAAGTGGAACTAAAACCTG+AGG | 0.669552 | 1.2:+84059360 | MS.gene037329:CDS |
CGATTGGCTTAAATGGCCTG+AGG | 0.670626 | 1.2:+84058572 | MS.gene037329:CDS |
GGGTGGCATGCAAATGCCGA+TGG | 0.671435 | 1.2:+84056625 | MS.gene037329:CDS |
GCTGGGAACCACTAGTCATG+TGG | 0.677762 | 1.2:+84057016 | MS.gene037329:CDS |
ATGAGTCTACGATTCGTGAG+TGG | 0.678627 | 1.2:+84056593 | MS.gene037329:CDS |
ACGCGGCAGAAAGAGAAAGG+CGG | 0.678843 | 1.2:+84055327 | MS.gene037329:CDS |
TGGGTTCATCTGGATCAGGG+AGG | 0.685323 | 1.2:-84054838 | None:intergenic |
TCAATGTCAAAGAAATGACA+GGG | 0.687101 | 1.2:+84055547 | MS.gene037329:CDS |
TTTACTCAAAATCTCGGACG+CGG | 0.689301 | 1.2:+84058789 | MS.gene037329:CDS |
ATGAACTCAGCATGATGACG+AGG | 0.692646 | 1.2:-84058645 | None:intergenic |
ATTGTGTAAAGCCTGACATG+GGG | 0.693819 | 1.2:+84058742 | MS.gene037329:CDS |
CTGCATCAGACACATCACAA+TGG | 0.698372 | 1.2:-84058830 | None:intergenic |
GGTCGCAATTATCTACATGG+TGG | 0.698999 | 1.2:+84056526 | MS.gene037329:CDS |
GGCTGAAACCAACAACGAGG+AGG | 0.705772 | 1.2:+84056029 | MS.gene037329:CDS |
TGGTGACCTGATGGTTGGAG+AGG | 0.707195 | 1.2:+84059495 | MS.gene037329:CDS |
ATGATATACACAATAACACA+AGG | 0.707929 | 1.2:+84056839 | MS.gene037329:CDS |
GGACGATGAACGTGATGACG+TGG | 0.712626 | 1.2:+84054982 | MS.gene037329:CDS |
AAATGGTCTGATCATGAAGG+GGG | 0.713662 | 1.2:-84060079 | None:intergenic |
GCATGTTGGCGCCAAAACGG+TGG | 0.714446 | 1.2:+84055051 | MS.gene037329:CDS |
AGGGCTGTAGATCTACACCA+TGG | 0.722496 | 1.2:+84056910 | MS.gene037329:CDS |
CAACTGGTGAGAAAGAGACG+CGG | 0.745058 | 1.2:+84055310 | MS.gene037329:CDS |
GATAAATCACAGATCCGCTG+CGG | 0.750646 | 1.2:+84061743 | MS.gene037329:CDS |
CGATGAACGTGATGACGTGG+TGG | 0.763971 | 1.2:+84054985 | MS.gene037329:CDS |
TCAATGGCACTGGAGCAAAG+GGG | 0.769506 | 1.2:+84056948 | MS.gene037329:CDS |
GTGAGTGGTCAAGATCTGGG+TGG | 0.773278 | 1.2:+84056608 | MS.gene037329:CDS |
TAAGGCTGAAACCAACAACG+AGG | 0.802053 | 1.2:+84056026 | MS.gene037329:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 84054776 | 84062430 | 84054776 | ID=MS.gene037329 |
chr1.2 | mRNA | 84054776 | 84062430 | 84054776 | ID=MS.gene037329.t1;Parent=MS.gene037329 |
chr1.2 | exon | 84054776 | 84055420 | 84054776 | ID=MS.gene037329.t1.exon1;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84054776 | 84055420 | 84054776 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84055518 | 84055633 | 84055518 | ID=MS.gene037329.t1.exon2;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84055518 | 84055633 | 84055518 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84055829 | 84055928 | 84055829 | ID=MS.gene037329.t1.exon3;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84055829 | 84055928 | 84055829 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84056015 | 84056153 | 84056015 | ID=MS.gene037329.t1.exon4;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84056015 | 84056153 | 84056015 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84056234 | 84056297 | 84056234 | ID=MS.gene037329.t1.exon5;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84056234 | 84056297 | 84056234 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84056381 | 84057119 | 84056381 | ID=MS.gene037329.t1.exon6;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84056381 | 84057119 | 84056381 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84058522 | 84058851 | 84058522 | ID=MS.gene037329.t1.exon7;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84058522 | 84058851 | 84058522 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84059337 | 84059636 | 84059337 | ID=MS.gene037329.t1.exon8;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84059337 | 84059636 | 84059337 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84060071 | 84060143 | 84060071 | ID=MS.gene037329.t1.exon9;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84060071 | 84060143 | 84060071 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84060243 | 84060328 | 84060243 | ID=MS.gene037329.t1.exon10;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84060243 | 84060328 | 84060243 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84061657 | 84061776 | 84061657 | ID=MS.gene037329.t1.exon11;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84061657 | 84061776 | 84061657 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
chr1.2 | exon | 84062372 | 84062430 | 84062372 | ID=MS.gene037329.t1.exon12;Parent=MS.gene037329.t1 |
chr1.2 | CDS | 84062372 | 84062430 | 84062372 | ID=cds.MS.gene037329.t1;Parent=MS.gene037329.t1 |
Gene Sequence |
Protein sequence |