AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037334

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037334.t1 MTR_1g114070 95.050 707 35 0 2 708 218 924 0.0 1389
MS.gene037334.t1 MTR_1g114150 73.816 718 174 5 2 708 336 1050 0.0 1092
MS.gene037334.t1 MTR_1g114130 73.464 716 176 6 6 708 324 1038 0.0 1074
MS.gene037334.t1 MTR_1g069565 69.241 738 189 4 9 708 144 881 0.0 1034
MS.gene037334.t1 MTR_5g065200 69.817 709 205 3 2 708 133 834 0.0 998
MS.gene037334.t1 MTR_1g069565 63.396 795 196 7 9 708 144 938 0.0 981
MS.gene037334.t1 MTR_1g114150 72.982 607 150 5 2 597 336 939 0.0 907
MS.gene037334.t1 MTR_5g047620 63.063 666 209 8 73 708 139 797 0.0 826
MS.gene037334.t1 MTR_0020s0100 60.413 629 221 10 73 691 81 691 0.0 745
MS.gene037334.t1 MTR_2g024270 46.591 704 330 11 9 706 154 817 0.0 586
MS.gene037334.t1 MTR_4g132540 43.555 737 337 14 9 706 168 864 0.0 580
MS.gene037334.t1 MTR_2g024140 44.681 705 330 13 9 706 34 685 0.0 557
MS.gene037334.t1 MTR_7g117445 46.909 550 270 9 3 537 134 676 7.34e-157 476
MS.gene037334.t1 MTR_7g117445 65.591 93 32 0 555 647 773 865 3.75e-33 137
MS.gene037334.t1 MTR_7g117445 46.909 550 270 9 3 537 134 676 1.93e-156 476
MS.gene037334.t1 MTR_7g117445 61.438 153 59 0 555 707 773 925 1.37e-55 205
MS.gene037334.t1 MTR_7g117445 46.909 550 270 9 3 537 134 676 2.29e-156 476
MS.gene037334.t1 MTR_7g117445 61.438 153 59 0 555 707 773 925 1.50e-55 205
MS.gene037334.t1 MTR_7g117445 46.909 550 270 9 3 537 134 676 7.47e-156 476
MS.gene037334.t1 MTR_7g117445 61.438 153 59 0 555 707 773 925 1.66e-55 205
MS.gene037334.t1 MTR_1g083120 34.987 746 399 11 3 707 192 892 6.58e-151 462
MS.gene037334.t1 MTR_1g083120 34.987 746 399 11 3 707 209 909 1.11e-150 462
MS.gene037334.t1 MTR_1g008060 45.386 531 250 10 9 533 861 1357 1.97e-132 429
MS.gene037334.t1 MTR_1g008060 68.382 136 43 0 562 697 1542 1677 1.33e-54 204
MS.gene037334.t1 MTR_1g008060 45.386 531 250 10 9 533 870 1366 2.45e-132 428
MS.gene037334.t1 MTR_1g008060 68.382 136 43 0 562 697 1551 1686 1.31e-54 204
MS.gene037334.t1 MTR_1g083120 34.192 699 373 12 3 659 192 845 1.03e-131 410
MS.gene037334.t1 MTR_1g083120 34.448 688 365 11 3 649 192 834 1.10e-131 410
MS.gene037334.t1 MTR_2g011630 34.305 755 416 15 9 698 207 946 2.99e-128 404
MS.gene037334.t1 MTR_8g062940 52.989 368 142 3 9 376 33 369 7.05e-122 369
MS.gene037334.t1 MTR_2g011630 34.770 673 359 14 91 698 77 734 8.52e-115 363
MS.gene037334.t1 MTR_2g011630 34.770 673 359 14 91 698 45 702 8.71e-115 362
MS.gene037334.t1 MTR_4g091520 36.250 560 265 13 231 707 727 1277 1.22e-100 336
MS.gene037334.t1 MTR_4g091520 37.143 175 100 4 9 174 260 433 7.17e-28 120
MS.gene037334.t1 MTR_2g024240 54.325 289 116 3 385 671 114 388 4.30e-99 310
MS.gene037334.t1 MTR_4g091520 41.892 296 163 5 231 523 657 946 1.33e-61 224
MS.gene037334.t1 MTR_4g091520 37.143 175 100 4 9 174 260 433 5.87e-28 121
MS.gene037334.t1 MTR_4g091520 41.892 296 163 5 231 523 692 981 1.88e-61 224
MS.gene037334.t1 MTR_4g091520 37.143 175 100 4 9 174 260 433 5.74e-28 121
MS.gene037334.t1 MTR_4g091520 41.892 296 163 5 231 523 727 1016 1.93e-61 224
MS.gene037334.t1 MTR_4g091520 37.143 175 100 4 9 174 260 433 6.38e-28 121
MS.gene037334.t1 MTR_0295s0020 59.659 176 66 2 375 547 11 184 7.79e-61 202
MS.gene037334.t1 MTR_8g465700 53.333 180 80 2 318 497 2 177 7.63e-54 187
MS.gene037334.t1 MTR_8g465720 67.416 89 28 1 561 649 52 139 1.23e-34 129
MS.gene037334.t1 MTR_8g013920 54.930 142 41 4 410 547 40 162 2.56e-32 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037334.t1 AT1G11950 48.442 706 336 11 4 706 188 868 0.0 640
MS.gene037334.t1 AT1G11950 48.442 706 336 11 4 706 188 868 0.0 640
MS.gene037334.t1 AT1G62310 49.062 693 331 10 8 695 208 883 0.0 634
MS.gene037334.t1 AT4G00990 42.139 776 353 14 5 706 76 829 0.0 580
MS.gene037334.t1 AT1G11950 47.261 639 309 11 4 639 188 801 0.0 553
MS.gene037334.t1 AT3G07610 56.994 479 195 4 221 698 415 883 3.11e-177 533
MS.gene037334.t1 AT3G07610 44.974 189 103 1 7 195 153 340 7.64e-47 179
MS.gene037334.t1 AT4G00990 40.828 725 333 14 5 655 76 778 1.97e-172 513
MS.gene037334.t1 AT4G00990 41.144 717 326 14 5 647 76 770 4.36e-172 512
MS.gene037334.t1 AT3G07610 54.618 498 199 5 221 698 415 905 3.76e-169 513
MS.gene037334.t1 AT3G07610 44.974 189 103 1 7 195 153 340 6.37e-47 180
MS.gene037334.t1 AT1G09060 32.473 736 422 12 3 707 200 891 3.47e-120 382
MS.gene037334.t1 AT1G09060 32.473 736 422 12 3 707 200 891 3.47e-120 382
MS.gene037334.t1 AT1G09060 32.473 736 422 12 3 707 214 905 4.12e-120 382
MS.gene037334.t1 AT1G09060 32.473 736 422 12 3 707 214 905 4.12e-120 382
MS.gene037334.t1 AT3G07610 56.890 283 115 2 221 503 415 690 3.17e-95 311
MS.gene037334.t1 AT3G07610 44.974 189 103 1 7 195 153 340 6.62e-47 178
MS.gene037334.t1 AT4G21430 34.642 433 244 5 306 705 485 911 2.10e-80 275
MS.gene037334.t1 AT4G21430 29.299 157 108 3 9 163 227 382 8.58e-12 69.3

Find 162 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAGATATTCTTTCAATT+TGG 0.093161 1.2:+84037172 None:intergenic
GCCGATTCTACCTGCTTTAA+AGG 0.132025 1.2:+84037113 None:intergenic
ATATCACTCTCTTTCAATTT+AGG 0.147719 1.2:+84040905 None:intergenic
GCCTCCTTCTGATTTATTTC+AGG 0.172247 1.2:-84038124 MS.gene037334:CDS
AACCAAAACTACATCGTATT+TGG 0.218834 1.2:+84039674 None:intergenic
AAATCATACTCAAGCTTAAT+TGG 0.220679 1.2:+84040239 None:intergenic
TCACATTCATTATCAGCTTT+TGG 0.248622 1.2:+84040077 None:intergenic
GGATTTGTGTATTCTTTATA+AGG 0.268369 1.2:+84038060 None:intergenic
GTCGCAGCGATTGGCTTAAA+TGG 0.273010 1.2:-84038173 MS.gene037334:CDS
AGTACATTGCTGACAATTAC+AGG 0.278275 1.2:+84039765 None:intergenic
CCAAGAACATATATTGCTTA+TGG 0.280860 1.2:-84037973 MS.gene037334:CDS
ATCCCAGAGAGCACCTTCTA+AGG 0.286251 1.2:+84037217 None:intergenic
TGTCATTTCTTTGACATTGA+TGG 0.286327 1.2:+84041194 None:intergenic
CTCCAAATACGATGTAGTTT+TGG 0.286573 1.2:-84039676 MS.gene037334:CDS
CTCCGTGGTGGGAAGCTTCT+AGG 0.287089 1.2:-84040272 MS.gene037334:CDS
TCTAGATATTCTTTCAATTT+GGG 0.290597 1.2:+84037173 None:intergenic
ACTAACTCAGAGATGCAATT+TGG 0.317312 1.2:+84040020 None:intergenic
TCAGACCATTTATCTGAATA+TGG 0.327236 1.2:-84036647 MS.gene037334:CDS
CCATAAGCAATATATGTTCT+TGG 0.328103 1.2:+84037973 None:intergenic
CAACCTTGCTGTGAAGTTGC+CGG 0.339593 1.2:-84038022 MS.gene037334:CDS
ATGCTCCATATTCAGATAAA+TGG 0.340188 1.2:+84036642 None:intergenic
ATGAAACTTAAGAAAGAGTA+TGG 0.363484 1.2:-84036616 MS.gene037334:intron
ATTCGTGAGTGGTCAAGATC+TGG 0.381498 1.2:-84040134 MS.gene037334:CDS
ATCCCTTAGAAGGTGCTCTC+TGG 0.383194 1.2:-84037220 MS.gene037334:CDS
CTAAAGATGAGCGTGTGTTC+TGG 0.394804 1.2:-84040462 MS.gene037334:intron
CTCAAAGCTAAATATAAAAC+CGG 0.396606 1.2:-84040494 MS.gene037334:CDS
CTCAACCTCCTCCTCGTTGT+TGG 0.396999 1.2:+84040701 None:intergenic
GTTCTTGCTCGAAACCTGTT+AGG 0.397008 1.2:-84039929 MS.gene037334:CDS
TAGAGGAGACTCGTGATAAT+AGG 0.397753 1.2:-84039953 MS.gene037334:CDS
ATATCATCGGTGTACCTAAC+AGG 0.407455 1.2:+84039915 None:intergenic
AGGCAGTTAATTGTTTAGAT+TGG 0.408112 1.2:-84039647 MS.gene037334:CDS
TTCAATGGCACTGGAGCAAA+GGG 0.413215 1.2:-84039791 MS.gene037334:CDS
TATGTTCTTGGCCCCATGTC+AGG 0.417723 1.2:+84037985 None:intergenic
AATATCCACCAATTCTTCAC+TGG 0.420686 1.2:-84038207 MS.gene037334:CDS
AGGTTGAGAGAACCACTAAA+AGG 0.429360 1.2:+84038039 None:intergenic
CGAGGTCGCAATTATCTACA+TGG 0.434006 1.2:-84040215 MS.gene037334:CDS
AATGTACTTGAATGCACATC+TGG 0.441844 1.2:-84039750 MS.gene037334:CDS
TTTGTCTCTCCCGAACATAT+TGG 0.442105 1.2:-84035057 MS.gene037334:CDS
GCAGCGGATCTGTGATTTAT+CGG 0.450090 1.2:+84034997 None:intergenic
GTTGGAGAGGATCCCTTAGA+AGG 0.451802 1.2:-84037230 MS.gene037334:CDS
GAAGCACTCACCAATATGTT+CGG 0.452411 1.2:+84035047 None:intergenic
TTCTTCACTGGGTACACAAA+TGG 0.460684 1.2:-84038195 MS.gene037334:CDS
TCTTCCACATTTAAGACGGT+TGG 0.461419 1.2:-84040652 MS.gene037334:CDS
GAAGTATCCTTCTCAGTTCA+AGG 0.464781 1.2:+84040045 None:intergenic
AGCACCTTGAGCAAGATAAG+AGG 0.465265 1.2:-84037325 MS.gene037334:CDS
TTAATGACACTAATTTCCTC+AGG 0.465562 1.2:+84037362 None:intergenic
TTACCTTCAGATTTCTGACT+TGG 0.467821 1.2:+84036428 None:intergenic
AATGCACATCTGGTTTAAGC+TGG 0.467845 1.2:-84039740 MS.gene037334:CDS
TCTTTCAATTTCAACACCTC+AGG 0.472947 1.2:+84038150 None:intergenic
ATTTGGAGTTGGTTATTTGA+CGG 0.476343 1.2:+84039691 None:intergenic
TTGTGTACCCAGTGAAGAAT+TGG 0.478196 1.2:+84038199 None:intergenic
GACTTGTAGGAATTGAGCCT+TGG 0.481982 1.2:-84036504 MS.gene037334:intron
ATCCGCTGCGGACAAGTTTG+AGG 0.482235 1.2:-84034983 MS.gene037334:intron
ACACAAATGGTCGCAGCGAT+TGG 0.484713 1.2:-84038182 MS.gene037334:CDS
TCCCTTAGAAGGTGCTCTCT+GGG 0.498565 1.2:-84037219 MS.gene037334:CDS
ATCAAGTGCAACCTTGATGC+AGG 0.498619 1.2:+84035080 None:intergenic
CACATCAAGCATAGCATGTA+CGG 0.501504 1.2:+84034352 None:intergenic
ATCAATGTCAAAGAAATGAC+AGG 0.501804 1.2:-84041192 MS.gene037334:CDS
TGCGGAATTCCTCTGTCAAA+CGG 0.503979 1.2:+84035025 None:intergenic
GCACATCATGTATACAAAAG+TGG 0.504161 1.2:-84041126 MS.gene037334:intron
AGGTGTTGAAATTGAAAGAT+TGG 0.508050 1.2:-84038146 MS.gene037334:CDS
AGGGATCCTCTCCAACCATC+AGG 0.508501 1.2:+84037237 None:intergenic
AACTACATCGTATTTGGAGT+TGG 0.509194 1.2:+84039680 None:intergenic
TTTCAATGGCACTGGAGCAA+AGG 0.515097 1.2:-84039792 MS.gene037334:CDS
GTTGACTCATATCGCTAAAG+TGG 0.516636 1.2:-84037393 MS.gene037334:CDS
TCAGGCTTTACACAATAATC+CGG 0.522487 1.2:+84038003 None:intergenic
CGCAGCAACAGAGGAGACAA+AGG 0.527535 1.2:+84040297 None:intergenic
AAGCACTCACCAATATGTTC+GGG 0.527844 1.2:+84035048 None:intergenic
GCTGATAATGAATGTGATCA+TGG 0.528933 1.2:-84040071 MS.gene037334:CDS
TCTGTTGCAGTCCTGCATCA+AGG 0.530126 1.2:-84035091 MS.gene037334:intron
TGAAGAACAAATGATTGAGA+AGG 0.530667 1.2:-84040628 MS.gene037334:CDS
AAGAGGGAGCTACATGGTGA+TGG 0.531116 1.2:-84037308 MS.gene037334:CDS
GTTGCTGCGAGCTCCGTGGT+GGG 0.531732 1.2:-84040283 MS.gene037334:CDS
GATAAATGGTCTGATCATGA+AGG 0.531871 1.2:+84036656 None:intergenic
AGAGGGAGCTACATGGTGAT+GGG 0.532113 1.2:-84037307 MS.gene037334:CDS
ATGGTTTCCTTGAACTGAGA+AGG 0.533086 1.2:-84040052 MS.gene037334:CDS
CAAACCAGCAGGAATGAAAA+CGG 0.534926 1.2:+84036456 None:intergenic
GCTACATGGTGATGGGGAGG+CGG 0.535164 1.2:-84037300 MS.gene037334:CDS
TGTGTATTCTTTATAAGGCA+AGG 0.535177 1.2:+84038065 None:intergenic
TATGGATTTACTCAAAATCT+CGG 0.535793 1.2:-84037955 MS.gene037334:CDS
TATAGGAATACCTCGTCTCC+TGG 0.539286 1.2:+84040596 None:intergenic
TGTGTTATTGTGTATATCAT+CGG 0.540704 1.2:+84039902 None:intergenic
TTCGTGAGTGGTCAAGATCT+GGG 0.542666 1.2:-84040133 MS.gene037334:CDS
CAATTGCATTCCTTTAAAGC+AGG 0.542700 1.2:-84037123 MS.gene037334:intron
GCTCCCTCTTATCTTGCTCA+AGG 0.544578 1.2:+84037321 None:intergenic
ACTTGGTGAGGCAAACCAGC+AGG 0.547834 1.2:+84036445 None:intergenic
GCACCTTGAGCAAGATAAGA+GGG 0.549030 1.2:-84037324 MS.gene037334:CDS
TTAGATGCACAAAATGCAAA+CGG 0.550175 1.2:-84041159 MS.gene037334:CDS
TCCCAGAGAGCACCTTCTAA+GGG 0.550365 1.2:+84037218 None:intergenic
TCATCCAACCGTCTTAAATG+TGG 0.550657 1.2:+84040648 None:intergenic
AACTCAGAGATGCAATTTGG+AGG 0.551495 1.2:+84040023 None:intergenic
TGGTGTAGATCTACAGCCCT+TGG 0.555022 1.2:+84039831 None:intergenic
TTGACATTGATGGCACATTG+AGG 0.559359 1.2:+84041204 None:intergenic
TGTTGCTGCGAGCTCCGTGG+TGG 0.562600 1.2:-84040284 MS.gene037334:CDS
ATATCCACCAATTCTTCACT+GGG 0.564592 1.2:-84038206 MS.gene037334:CDS
TTCTCTAAGTATCTGCTGAA+AGG 0.564863 1.2:-84040678 MS.gene037334:CDS
TTCAGATTTCTGACTTGGTG+AGG 0.565040 1.2:+84036433 None:intergenic
GACTTCTTCCACATTTAAGA+CGG 0.566290 1.2:-84040656 MS.gene037334:CDS
TGTACCCAGTGAAGAATTGG+TGG 0.567688 1.2:+84038202 None:intergenic
ACAGCACACAGGGCATGCCT+TGG 0.575809 1.2:+84040880 None:intergenic
CAAGATAAGAGGGAGCTACA+TGG 0.577423 1.2:-84037314 MS.gene037334:CDS
ATGCACATCTGGTTTAAGCT+GGG 0.577804 1.2:-84039739 MS.gene037334:CDS
TGTCAAAGAAATGACAGGGC+CGG 0.578080 1.2:-84041187 MS.gene037334:CDS
CAACTCTCTGACACTAATGA+TGG 0.579184 1.2:-84037263 MS.gene037334:CDS
CACGGAGCTCGCAGCAACAG+AGG 0.580415 1.2:+84040288 None:intergenic
GGAGCTACATGGTGATGGGG+AGG 0.581361 1.2:-84037303 MS.gene037334:CDS
TGCAATTATCACAGCACACA+GGG 0.584315 1.2:+84040870 None:intergenic
ACTATAGGAAATGAAGCGTA+AGG 0.584966 1.2:-84040730 MS.gene037334:intron
ATAAATGGTCTGATCATGAA+GGG 0.587122 1.2:+84036657 None:intergenic
CATCATTAGTGTCAGAGAGT+TGG 0.587536 1.2:+84037264 None:intergenic
AATCAAGCTTCAAGATGTAG+AGG 0.589159 1.2:-84039970 MS.gene037334:CDS
TATTGTGTAAAGCCTGACAT+GGG 0.589216 1.2:-84037997 MS.gene037334:CDS
TGAAACCAACAACGAGGAGG+AGG 0.589775 1.2:-84040706 MS.gene037334:CDS
AGTTCCTGAAATAAATCAGA+AGG 0.590173 1.2:+84038120 None:intergenic
CACTAATGATGGTGACCTGA+TGG 0.592137 1.2:-84037252 MS.gene037334:CDS
TGGACAAGGAATGCTACCAT+CGG 0.593451 1.2:+84040097 None:intergenic
GCAATTGCAAAGCATGCTTG+CGG 0.593478 1.2:-84040850 MS.gene037334:CDS
TTGAGAAGGAAAGAGAAGCC+AGG 0.596035 1.2:-84040614 MS.gene037334:CDS
GAAAGAGAAGCCAGGAGACG+AGG 0.596795 1.2:-84040606 MS.gene037334:intron
AATGATGGTGACCTGATGGT+TGG 0.598278 1.2:-84037248 MS.gene037334:CDS
AACTTCTGAATAAAAGTCCA+AGG 0.598579 1.2:+84036487 None:intergenic
AGAAAGTGTATCACATGCAG+AGG 0.606509 1.2:-84040168 MS.gene037334:CDS
CACCTAGAAGCTTCCCACCA+CGG 0.608942 1.2:+84040270 None:intergenic
TGTGATTTATCGGAAGCTTG+CGG 0.611620 1.2:+84035007 None:intergenic
TTATTGTGTAAAGCCTGACA+TGG 0.616770 1.2:-84037998 MS.gene037334:CDS
CTCTGTTGCTGCGAGCTCCG+TGG 0.620459 1.2:-84040287 MS.gene037334:CDS
TTGCAATTATCACAGCACAC+AGG 0.625183 1.2:+84040869 None:intergenic
GAAAGAGAGTGATATTGCCA+AGG 0.625820 1.2:-84040897 MS.gene037334:CDS
TCCTGAAATAAATCAGAAGG+AGG 0.633909 1.2:+84038123 None:intergenic
TATACACAATAACACAAGGA+AGG 0.636388 1.2:-84039895 MS.gene037334:CDS
TCACCAAGTCAGAAATCTGA+AGG 0.640211 1.2:-84036431 MS.gene037334:intron
CGTACATGCTATGCTTGATG+TGG 0.642539 1.2:-84034351 MS.gene037334:CDS
AACCTCAAACTTGTCCGCAG+CGG 0.644100 1.2:+84034981 None:intergenic
AATGCACGCCACATGACTAG+TGG 0.646851 1.2:+84039714 None:intergenic
TCATCTTTAGAATAATCCGC+CGG 0.653440 1.2:+84040475 None:intergenic
GAGGGAGCTACATGGTGATG+GGG 0.656552 1.2:-84037306 MS.gene037334:CDS
CGTGGTGGGAAGCTTCTAGG+TGG 0.658159 1.2:-84040269 MS.gene037334:CDS
TAATTGTTTAGATTGGTGTG+AGG 0.659042 1.2:-84039640 MS.gene037334:intron
TAAATGGTCTGATCATGAAG+GGG 0.660847 1.2:+84036658 None:intergenic
AAAGCTAAATATAAAACCGG+CGG 0.661902 1.2:-84040491 MS.gene037334:CDS
TGAGTGCTTCCGTTTGACAG+AGG 0.665002 1.2:-84035034 MS.gene037334:CDS
AATCCGGCAACTTCACAGCA+AGG 0.666731 1.2:+84038019 None:intergenic
TAAAGTGGAACTAAAACCTG+AGG 0.669552 1.2:-84037378 MS.gene037334:CDS
CGATTGGCTTAAATGGCCTG+AGG 0.670626 1.2:-84038166 MS.gene037334:CDS
GGGTGGCATGCAAATGCCGA+TGG 0.671435 1.2:-84040113 MS.gene037334:CDS
GCTGGGAACCACTAGTCATG+TGG 0.677762 1.2:-84039722 MS.gene037334:CDS
ATGAGTCTACGATTCGTGAG+TGG 0.678627 1.2:-84040145 MS.gene037334:CDS
TCAATGTCAAAGAAATGACA+GGG 0.687101 1.2:-84041191 MS.gene037334:CDS
TTTACTCAAAATCTCGGACG+CGG 0.689301 1.2:-84037949 MS.gene037334:CDS
ATGAACTCAGCATGATGACG+AGG 0.692646 1.2:+84038093 None:intergenic
ATTGTGTAAAGCCTGACATG+GGG 0.693819 1.2:-84037996 MS.gene037334:CDS
CTGCATCAGACACATCACAA+TGG 0.698372 1.2:+84037908 None:intergenic
GGTCGCAATTATCTACATGG+TGG 0.698999 1.2:-84040212 MS.gene037334:CDS
GGCTGAAACCAACAACGAGG+AGG 0.705772 1.2:-84040709 MS.gene037334:CDS
TGGTGACCTGATGGTTGGAG+AGG 0.707195 1.2:-84037243 MS.gene037334:CDS
ATGATATACACAATAACACA+AGG 0.707929 1.2:-84039899 MS.gene037334:CDS
AAATGGTCTGATCATGAAGG+GGG 0.713662 1.2:+84036659 None:intergenic
AGGGCTGTAGATCTACACCA+TGG 0.722496 1.2:-84039828 MS.gene037334:CDS
GATAAATCACAGATCCGCTG+CGG 0.750646 1.2:-84034995 MS.gene037334:CDS
TCAATGGCACTGGAGCAAAG+GGG 0.769506 1.2:-84039790 MS.gene037334:CDS
GTGAGTGGTCAAGATCTGGG+TGG 0.773278 1.2:-84040130 MS.gene037334:CDS
TAAGGCTGAAACCAACAACG+AGG 0.802053 1.2:-84040712 MS.gene037334:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr1.2 gene 84034329 84041242 84034329 ID=MS.gene037334
chr1.2 mRNA 84034329 84041242 84034329 ID=MS.gene037334.t1;Parent=MS.gene037334
chr1.2 exon 84041127 84041242 84041127 ID=MS.gene037334.t1.exon1;Parent=MS.gene037334.t1
chr1.2 CDS 84041127 84041242 84041127 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
chr1.2 exon 84040832 84040931 84040832 ID=MS.gene037334.t1.exon2;Parent=MS.gene037334.t1
chr1.2 CDS 84040832 84040931 84040832 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
chr1.2 exon 84040607 84040745 84040607 ID=MS.gene037334.t1.exon3;Parent=MS.gene037334.t1
chr1.2 CDS 84040607 84040745 84040607 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
chr1.2 exon 84040463 84040526 84040463 ID=MS.gene037334.t1.exon4;Parent=MS.gene037334.t1
chr1.2 CDS 84040463 84040526 84040463 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
chr1.2 exon 84039641 84040379 84039641 ID=MS.gene037334.t1.exon5;Parent=MS.gene037334.t1
chr1.2 CDS 84039641 84040379 84039641 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
chr1.2 exon 84037909 84038238 84037909 ID=MS.gene037334.t1.exon6;Parent=MS.gene037334.t1
chr1.2 CDS 84037909 84038238 84037909 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
chr1.2 exon 84037124 84037423 84037124 ID=MS.gene037334.t1.exon7;Parent=MS.gene037334.t1
chr1.2 CDS 84037124 84037423 84037124 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
chr1.2 exon 84036617 84036689 84036617 ID=MS.gene037334.t1.exon8;Parent=MS.gene037334.t1
chr1.2 CDS 84036617 84036689 84036617 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
chr1.2 exon 84036432 84036517 84036432 ID=MS.gene037334.t1.exon9;Parent=MS.gene037334.t1
chr1.2 CDS 84036432 84036517 84036432 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
chr1.2 exon 84034984 84035103 84034984 ID=MS.gene037334.t1.exon10;Parent=MS.gene037334.t1
chr1.2 CDS 84034984 84035103 84034984 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
chr1.2 exon 84034329 84034387 84034329 ID=MS.gene037334.t1.exon11;Parent=MS.gene037334.t1
chr1.2 CDS 84034329 84034387 84034329 ID=cds.MS.gene037334.t1;Parent=MS.gene037334.t1
Gene Sequence

>MS.gene037334

TGTTTTGAAGGGGTTTCCTCAATGTGCCATCAATGTCAAAGAAATGACAGGGCCGGCGTTGTTAGATGCACAAAATGCAAACGGAAAAGATTTTGCACATCATGTATACAAAAGTGGTACAACTTCCTTAACTTCTGTTTTACTTTGTTTAACTTGCTTCATCCTATGTTGTGTCAGTTTGTTCTATTGTTTTTGAATATGCCTTGTTTGATAATTGGGATGTAGACCGAAGTTATTGCACATATTACATGTTTGGATTTTGGTTGATGAAATATTGATCAAACTATGCTTTTTTGTTGCCTTTTGCTAAGGTATCCTAAATTGAAAGAGAGTGATATTGCCAAGGCATGCCCTGTGTGCTGTGATAATTGCAATTGCAAAGCATGCTTGCGGTCTTTTAAACTCATCAATGTCAGTGATCCACCCTTCCACGATTAACTATTCTTCTGATTTTTCCGTAGTCTATATTTGAAATCTATCCATTTGGTTTACTATAGGAAATGAAGCGTAAGGCTGAAACCAACAACGAGGAGGAGGTTGAGTTCTCTAAGTATCTGCTGAAAGGACTTCTTCCACATTTAAGACGGTTGGATGAAGAACAAATGATTGAGAAGGAAAGAGAAGCCAGGAGACGAGGTATTCCTATATAGTCAGAGAAAATTTGTAGTTTCATATATTTTTCATTTTATAATTTGATTTTGGGATGTGAATTACAGGGCTCTCACTCTCAAAGCTAAATATAAAACCGGCGGATTATTCTAAAGATGAGCGTGTGTTCTGGTAAGGACTGATTTGGTATATTAATCAATGCTTTTTTTACTTATTCTAATGCTATATAGTTGTTGACTTCACACTTTTTGTAGTGACAACTGTAAAACATCAATATTTGACTACCACAGAAGCTGTACAAAATGCTCTTTTGACCTTTGTCTCCTCTGTTGCTGCGAGCTCCGTGGTGGGAAGCTTCTAGGTGGTGCAGATCCAATTAAGCTTGAGTATGATTTTCGAGGTCGCAATTATCTACATGGTGGAAATGAAGAAAAACATGTTAAAGAAAGTGTATCACATGCAGAGGATGAGTCTACGATTCGTGAGTGGTCAAGATCTGGGTGGCATGCAAATGCCGATGGTAGCATTCCTTGTCCAAAAGCTGATAATGAATGTGATCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCAAATTGCATCTCTGAGTTAGTTTGTAAAGCAAACAAACTTGCAGAAACAATCAAGCTTCAAGATGTAGAGGAGACTCGTGATAATAGGTGTTCTTGCTCGAAACCTGTTAGGTACACCGATGATATACACAATAACACAAGGAAGGCAGCTTTTCATGAAGATTCAAGTGACAAATTTTTATACTGTCCAAGGGCTGTAGATCTACACCATGGAGATTTAAAACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGCACATCTGGTTTAAGCTGGGAACCACTAGTCATGTGGCGTGCATTCCGTCAAATAACCAACTCCAAATACGATGTAGTTTTGGTTGTGAAGGCAGTTAATTGTTTAGATTGGTGTGAGGTTTGTTTGATTTCTCAATCCTTATGATGGAGGGGTTCTTACAGGAATTCATGTTTATTATCCATGTGTGAAACTTGTTTCTAATTTATTTAACCGACATTCTTAAAATTTGGATTGCACCTAACTTAACTCTACAAAACCGCCTTGTGAGGGGAGATGTATATCTCATTTATAAACATAGTTTGAGGCTATATCTCATCCAATGTGGAACTCTTATCAAACATATTTATTTTTTTAACTGGAAAGACTTTGCTTGAAAGTGACATCTAGTAGTGCTTGAACTGTAGCAGTTTGTTATTGTACTGTTGAAATACAACATTAGGGTTATGACTTGTGAGCCTCAAGCCAATTTTTTGAGTGCAATTGGCATGTGTTAGTCATAAAGTCGCAGTCGTTCGTGCTTCTCATATGTTGTTTCTCCCAACATTTTCAACAAACGCTGCTTCCTACTTCTCATTCAATATCTTGTAATCTTTTTAAATTTATCTAAATTTCTTGCTATCTGGTGTCCCAATTTGTTTTTGCATCACATATCCAGATTAATTGTTGTCATTGCATCCTCTTCATTCAATTTATCTATTGGTATTTTTGACTGTTATTATGTATTAGGGATGGCAATGGGTACCCTATGGGTAGGGTACTACAGTGCCCTTCCCCATACCCGTGTTTGTAAAAAATACTCGTGCCCAAGCCCGTATCCTCGTGGGCAACAACTTTAGTGCCCTTTCTCATAACCTATAGGTACCTTAGTGCTCATACCCGCATCCATTACCCGCACTTTAACTATGAAAAGACAATAAAAATATCACAATTGAAATAAAATTATGGTTTAAAATTTTTCAAATCAACTCATAAAATAGTACGAATCGTAGTTTTTAACAAAATAAAAAACATCCAAAACATCCTTCAAAAATTGTATACCAACAGAGGGGATTGGTTATTGTATTAGGTAGTTTTTAGGTTTAGACTTAGACTTAAATAGCTAAATAAATTAATTAATTATACACCAAAAATAAATAAATTATTTATCATATTATATAAATATGTATATGCTGGTTGCGGGGCTGGGTAGTATAGTACCCTTACCCATTTAAATTTGCAGGTAATACCCGGACCCAAACCCGAAGCCATGAAAGCAGGGTTTTACCCTACCCATTGTGGGTATTTTTAGCGGGTATCCATCGGGCCTGGTTCCAATTGCCATCCCTGTTACGTATACTTACTGCATGTTGATGTTAAGTTGGACTTATTGTTTTTTATGTTTCCTTGTTGAATTTTCTTTGTCCAGTTGTACTGCCTAACAGTCTCGGGTGAATTGTAACTGCTTTATGTTACTGCCTTTACTTGATATTCTGTTGCTGGTAATTTCTGCATTTTTATTTGAGTTGTTCATTGAATGCAGGGAGATATTAATATCCACCAATTCTTCACTGGGTACACAAATGGTCGCAGCGATTGGCTTAAATGGCCTGAGGTGTTGAAATTGAAAGATTGGCCTCCTTCTGATTTATTTCAGGAACTTTTACCTCGTCATCATGCTGAGTTCATATCTTCCTTGCCTTATAAAGAATACACAAATCCTTTTAGTGGTTCTCTCAACCTTGCTGTGAAGTTGCCGGATTATTGTGTAAAGCCTGACATGGGGCCAAGAACATATATTGCTTATGGATTTACTCAAAATCTCGGACGCGGTGATTCTGTGACTAAGCTCCATTGTGATGTGTCTGATGCAGTATGCTTCAAAACCTTTTTATATTTCTGGCATGTTTTTTCAGAATCTCTTAATTATTTGTGTTTTTTTTACGAAAGGTTTTATTGTTAATATGAATCGAGTATAGTATAAAGAAGTGCATAATTTGTAGGACATGTGCATTTTTGTTTTGTAAGCCATTTCATTTATCTGTTTATTTTCTTACGATCTGATTGTTGTGCAGCTTCAAGTATATGTCATAATTCTTTGTTCATTGCACTACCATAGATAATTTCTTCATTTGATTTGTTATTTCTCTTGGTATTTTTGTAATAATGACTCAAAAAAGTGTTCTTTTTATGACTAGTGGCATAAACTGCAAAGTATTTTTAGGACTTGAATAATGAATGATGCATTTCCTGATCAATTCTTTGTTAGCACTTTATAACTATTGATTTTTTTCTCCAAGTGAATATTTTATTATGAGGAAAATTAAATTATTATTTTTTTTGTAATTTTGCTATAAGGTAAATGTGTTGACTCATATCGCTAAAGTGGAACTAAAACCTGAGGAAATTAGTGTCATTAAGAAATTGACACGTAAGCACCTTGAGCAAGATAAGAGGGAGCTACATGGTGATGGGGAGGCGGTTGATATGTTTCACCAACTCTCTGACACTAATGATGGTGACCTGATGGTTGGAGAGGATCCCTTAGAAGGTGCTCTCTGGGATATTTTTCGGAGAGAAGATGTACCCAAATTGAAAGAATATCTAGAGAAGCATTTCAGAGAGTTCAGACATGTCAATTGCATTCCTTTAAAGCAGGTAGAATCGGCGTAGACAATTTTCCATTATCTAGCTCTATGGATGCCCCTCGTGACCATTTACTTTCTCTGCTGCTAACATGATATATAAATATCCCTGTTTTTTGTAACTTTTGGAGGGTTGCACTAGGATAAAATTGACACTATTACTTTCTTCCGAGTTAAGATTCAAATACACATGCCACAAAGGATTGTGTTGAAACATAATATAAAGTCTGACTGGTTTATTAATTTACGGTCCTTTCATTACTATGATTACAGTAGATACTTTTGTTCAGTGACCAGAGAGAAAGGAAATGCATTTTTGATGTAGATACCAGTCCAAAAGGTCATTGGTTGAATCAACATGTTTAATATGTTCCGTATCAAATTTGAAGTTTACAAGGCAGTCCTTGCTGTTTATTTTCTTGAATGAGATATCCTTTGGTAATGTAGGTTATTGACCCCCTTCATGATCAGACCATTTATCTGAATATGGAGCATAAGATGAAACTTAAGAAAGAGTATGGTTAGTAATATTTATAAATGTTCCTTTGTTGTTTGTAGATGGACTAGTTTGATCATTTAAATGGCACCACTTTGTTGACATTTCAACATTGACTTGTAGGAATTGAGCCTTGGACTTTTATTCAGAAGTTGGGAGATGCCGTTTTCATTCCTGCTGGTTTGCCTCACCAAGTCAGAAATCTGAAGGTAAAATTTATCGACAAAACCTACAGTATCATAGATACTGTTTTTGCTGTTCCCAATTAAAACAAGATTACAAGACACGTGTACTATTTTAACACCCAATTTTAACGTCATCAGCTTTCGTTAGTTTAGTCACACAGGATAATGGTACCGCCTTTCTGGACAGAAATAAGGGATGCCATTGCAAGGCTTGCTCTCACCGTGGATGTCACATAAAGCACTCATTGATTGTATAATTCTTCCTATGAGCTCCAATCTTTCTTTTAAGTGACTCTTGTGTTCTTTCTCATCACCACTCAAATCAAAGCTACTAAACCTATCTCCAACCCCACCATACTCAATAGCATACGACCTTGAAGCTGTGGTTTACTAACTCCAATTGTAATACAAATTTTAGTCAGTGCATTCTTTGTTATTCACCGGTTTTGTGTTACTTCCCAGAAGGAACTGCTCGTATTTAACGGGAAATCCGGTTGTGATTATTGGTGGCGGTGCTACTTGAATTGGAACGTAAGCCATCAGAAATTGGTGAATTACAAACGGTTTCCAACCAATTCCTCAGACAATGAACCGACGAATTGCGTCACCGGAACACTCAGCCATGTCGTGATTCATGAACCACTCTGGACCCTATTCGCCGCTGACATCACAATAAACCTCCGACAAGAACTTATTTTCAACAGTTTCAGAACCGACGACCATGGCGCTAACGTCAAATCATCAGCCATGATTGTAAGACTAGTAGTAAATCTCAAACATTATGAGAAAAGGGAAGAGAATCGACACAGATAGAGGGAGCGAGAAACAGAGAGAAAACCAAAAACGGAAATCAAACGGTGTTAAAATGTGGTGATTAAATGGTACGTGTGTCTTGTTTTAATTGGGAACAGCAAAAACAGTACCTATATGGTACTGTAGGCAAGTTTTGTCCAAAATTTATTTACATGGTACAAATTTCTTTGTTTGCCAAGAAGTGTGTAACGTCTATAAAATTTTGCTTGGAGCGAGGAATAACAGCTTGAATTAGATTAAGATCTGAATTGAGATATGATTTATTCTGTGTTTTATCTCTTATCCTTGGTGCTTGTATTCTCTAAAGTTTAGTAGATTGTTTAGTATTTTTTATGGCCAACTTTTTGATATATTTTGTAACTTTACAAGGCTAAAATTGAATTTGGATATTTCCTAATTAGTACAGCGTGATGGCTTCAACCTATGCAAATTGTTGAAGCCATACATCACAAACTCACTTTTTATGTCACTGTTGCTTTTTTGTTGAAACAATGCTTGAAATGTTTGTTTTATGTAATATATGCATAATTCTGTTGCAGTCCTGCATCAAGGTTGCACTTGATTTTGTCTCTCCCGAACATATTGGTGAGTGCTTCCGTTTGACAGAGGAATTCCGCAAGCTTCCGATAAATCACAGATCCGCTGCGGACAAGTTTGAGGTTTGCCAGACTACTTTCATTGATTTGATTTTACTTTTCCTATATATAAGGATACAAGACTCTTAATCCCTATTGAATAGGTAGTAAATTCATGAAAATAACTAAGTAATATGGAAAGTAATCTCAAGAGAAATTCCAACCAAGAAACTAATCCTATGAGATAAACTAAAATATTCCAACATAATATTAGAATATTATAAAATTCTTTTTATATATCCTCGCTCACCGGAGGGCAAGTGTGCTTGCATAACAGTATTGCTGACAAGGTTCTAACTTCTAATATTGACTGTTTTAATTCAGATAAAAGCCTTGTTGAGTGTATGAAATCTTGATCATTAAACCAATTTCAGTTCTATGTTCCCGTGTTATGTCATCATGTCAACAATTTCTTATTGGGATTTTATGTACTGTTTTTTTCCTGGTGTCTGCTTCTAATATTGACTGTTTTAATTCAGATAAAATCCTTGTTGAATGTATGAAATCTTGGTCATCAAGCCTATTTCAGTTCTATGTTCCCGTGTTCTGTCATCATGTCAACAATTTCTTATTGGGATTTTATGTACTGTTTTTTACTGATGACTGCTTCTTGGTACCAGGTGAAGAAAATTGCCGTACATGCTATGCTTGATGTGGTTGAAAAATTAGAGAAAGCAAG
Protein sequence

>MS.gene037334.t1

CFEGVSSMCHQCQRNDRAGVVRCTKCKRKRFCTSCIQKWYPKLKESDIAKACPVCCDNCNCKACLRSFKLINEMKRKAETNNEEEVEFSKYLLKGLLPHLRRLDEEQMIEKEREARRRGLSLSKLNIKPADYSKDERVFCDNCKTSIFDYHRSCTKCSFDLCLLCCCELRGGKLLGGADPIKLEYDFRGRNYLHGGNEEKHVKESVSHAEDESTIREWSRSGWHANADGSIPCPKADNECDHGFLELRRILPPNCISELVCKANKLAETIKLQDVEETRDNRCSCSKPVRYTDDIHNNTRKAAFHEDSSDKFLYCPRAVDLHHGDLKHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQITNSKYDVVLVVKAVNCLDWCEGDINIHQFFTGYTNGRSDWLKWPEVLKLKDWPPSDLFQELLPRHHAEFISSLPYKEYTNPFSGSLNLAVKLPDYCVKPDMGPRTYIAYGFTQNLGRGDSVTKLHCDVSDAVNVLTHIAKVELKPEEISVIKKLTRKHLEQDKRELHGDGEAVDMFHQLSDTNDGDLMVGEDPLEGALWDIFRREDVPKLKEYLEKHFREFRHVNCIPLKQVIDPLHDQTIYLNMEHKMKLKKEYGIEPWTFIQKLGDAVFIPAGLPHQVRNLKSCIKVALDFVSPEHIGECFRLTEEFRKLPINHRSAADKFEVKKIAVHAMLDVVEKLEKA