Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037340.t1 | AES62954.2 | 90.5 | 1040 | 93 | 2 | 1 | 1034 | 1 | 1040 | 0.00E+00 | 1740.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037340.t1 | Q9SSE9 | 47.4 | 781 | 337 | 7 | 292 | 1022 | 127 | 883 | 1.3e-204 | 714.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037340.t1 | G7IE69 | 90.5 | 1040 | 93 | 2 | 1 | 1034 | 1 | 1040 | 0.0e+00 | 1740.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene037340.t1 | TR | Jumonji |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037340.t1 | MTR_1g114130 | 92.603 | 1041 | 69 | 3 | 1 | 1034 | 1 | 1040 | 0.0 | 1882 |
MS.gene037340.t1 | MTR_1g114150 | 72.821 | 1067 | 193 | 12 | 42 | 1033 | 7 | 1051 | 0.0 | 1514 |
MS.gene037340.t1 | MTR_1g114150 | 71.204 | 955 | 178 | 12 | 42 | 921 | 7 | 939 | 0.0 | 1306 |
MS.gene037340.t1 | MTR_1g069565 | 71.529 | 850 | 182 | 6 | 234 | 1033 | 43 | 882 | 0.0 | 1205 |
MS.gene037340.t1 | MTR_1g069565 | 65.380 | 907 | 197 | 9 | 234 | 1033 | 43 | 939 | 0.0 | 1138 |
MS.gene037340.t1 | MTR_1g114070 | 74.555 | 731 | 173 | 5 | 304 | 1033 | 207 | 925 | 0.0 | 1125 |
MS.gene037340.t1 | MTR_1g114070 | 80.833 | 120 | 23 | 0 | 1 | 120 | 1 | 120 | 8.93e-49 | 189 |
MS.gene037340.t1 | MTR_5g065200 | 70.221 | 769 | 205 | 6 | 270 | 1032 | 84 | 834 | 0.0 | 1088 |
MS.gene037340.t1 | MTR_5g047620 | 68.413 | 668 | 187 | 8 | 385 | 1034 | 138 | 799 | 0.0 | 927 |
MS.gene037340.t1 | MTR_0020s0100 | 63.190 | 652 | 179 | 10 | 385 | 1015 | 80 | 691 | 0.0 | 820 |
MS.gene037340.t1 | MTR_7g117445 | 41.977 | 941 | 420 | 23 | 184 | 1034 | 24 | 928 | 0.0 | 664 |
MS.gene037340.t1 | MTR_7g117445 | 41.977 | 941 | 420 | 23 | 184 | 1034 | 24 | 928 | 0.0 | 663 |
MS.gene037340.t1 | MTR_7g117445 | 41.977 | 941 | 420 | 23 | 184 | 1034 | 24 | 928 | 0.0 | 663 |
MS.gene037340.t1 | MTR_4g132540 | 45.526 | 760 | 322 | 15 | 311 | 1030 | 157 | 864 | 0.0 | 629 |
MS.gene037340.t1 | MTR_2g024270 | 47.552 | 715 | 318 | 11 | 322 | 1030 | 154 | 817 | 0.0 | 614 |
MS.gene037340.t1 | MTR_7g117445 | 40.774 | 878 | 394 | 23 | 184 | 971 | 24 | 865 | 0.0 | 587 |
MS.gene037340.t1 | MTR_2g024140 | 44.016 | 752 | 344 | 14 | 289 | 1030 | 1 | 685 | 0.0 | 582 |
MS.gene037340.t1 | MTR_1g083120 | 36.059 | 746 | 396 | 15 | 322 | 1034 | 198 | 895 | 6.60e-148 | 465 |
MS.gene037340.t1 | MTR_1g083120 | 36.059 | 746 | 396 | 15 | 322 | 1034 | 215 | 912 | 7.78e-148 | 465 |
MS.gene037340.t1 | MTR_1g008060 | 44.673 | 535 | 259 | 10 | 316 | 845 | 855 | 1357 | 5.17e-131 | 435 |
MS.gene037340.t1 | MTR_1g008060 | 71.324 | 136 | 39 | 0 | 886 | 1021 | 1542 | 1677 | 6.00e-57 | 216 |
MS.gene037340.t1 | MTR_1g008060 | 44.673 | 535 | 259 | 10 | 316 | 845 | 864 | 1366 | 5.33e-131 | 435 |
MS.gene037340.t1 | MTR_1g008060 | 71.324 | 136 | 39 | 0 | 886 | 1021 | 1551 | 1686 | 5.72e-57 | 216 |
MS.gene037340.t1 | MTR_2g011630 | 34.375 | 768 | 409 | 16 | 322 | 1022 | 207 | 946 | 1.48e-130 | 420 |
MS.gene037340.t1 | MTR_1g083120 | 35.630 | 682 | 364 | 14 | 322 | 973 | 198 | 834 | 8.35e-129 | 412 |
MS.gene037340.t1 | MTR_1g083120 | 35.578 | 683 | 363 | 15 | 322 | 973 | 198 | 834 | 9.37e-129 | 412 |
MS.gene037340.t1 | MTR_2g011630 | 34.745 | 685 | 354 | 14 | 404 | 1022 | 45 | 702 | 3.91e-118 | 380 |
MS.gene037340.t1 | MTR_2g011630 | 34.745 | 685 | 354 | 14 | 404 | 1022 | 77 | 734 | 1.46e-117 | 379 |
MS.gene037340.t1 | MTR_8g062940 | 52.186 | 366 | 143 | 4 | 322 | 686 | 33 | 367 | 3.12e-115 | 360 |
MS.gene037340.t1 | MTR_2g024240 | 57.807 | 301 | 99 | 5 | 697 | 995 | 114 | 388 | 5.38e-108 | 342 |
MS.gene037340.t1 | MTR_0295s0020 | 61.850 | 173 | 63 | 1 | 681 | 853 | 8 | 177 | 3.55e-63 | 212 |
MS.gene037340.t1 | MTR_4g091520 | 41.806 | 299 | 159 | 6 | 543 | 835 | 657 | 946 | 1.89e-62 | 232 |
MS.gene037340.t1 | MTR_4g091520 | 36.585 | 164 | 97 | 3 | 322 | 479 | 260 | 422 | 3.00e-26 | 117 |
MS.gene037340.t1 | MTR_4g091520 | 50.820 | 61 | 29 | 1 | 885 | 945 | 1062 | 1121 | 1.60e-11 | 69.3 |
MS.gene037340.t1 | MTR_4g091520 | 41.806 | 299 | 159 | 6 | 543 | 835 | 727 | 1016 | 2.12e-62 | 232 |
MS.gene037340.t1 | MTR_4g091520 | 36.585 | 164 | 97 | 3 | 322 | 479 | 260 | 422 | 2.73e-26 | 117 |
MS.gene037340.t1 | MTR_4g091520 | 50.820 | 61 | 29 | 1 | 885 | 945 | 1132 | 1191 | 1.34e-11 | 69.7 |
MS.gene037340.t1 | MTR_4g091520 | 41.806 | 299 | 159 | 6 | 543 | 835 | 692 | 981 | 2.13e-62 | 232 |
MS.gene037340.t1 | MTR_4g091520 | 36.585 | 164 | 97 | 3 | 322 | 479 | 260 | 422 | 2.52e-26 | 117 |
MS.gene037340.t1 | MTR_4g091520 | 50.820 | 61 | 29 | 1 | 885 | 945 | 1097 | 1156 | 1.48e-11 | 69.3 |
MS.gene037340.t1 | MTR_4g091520 | 41.806 | 299 | 159 | 6 | 543 | 835 | 727 | 1016 | 2.40e-62 | 232 |
MS.gene037340.t1 | MTR_4g091520 | 51.701 | 147 | 70 | 1 | 885 | 1031 | 1132 | 1277 | 1.75e-43 | 172 |
MS.gene037340.t1 | MTR_4g091520 | 36.585 | 164 | 97 | 3 | 322 | 479 | 260 | 422 | 2.85e-26 | 117 |
MS.gene037340.t1 | MTR_8g465700 | 56.180 | 178 | 74 | 2 | 632 | 809 | 4 | 177 | 1.35e-57 | 200 |
MS.gene037340.t1 | MTR_6g051900 | 70.748 | 147 | 36 | 2 | 1 | 147 | 1 | 140 | 5.53e-56 | 190 |
MS.gene037340.t1 | MTR_8g013920 | 65.476 | 168 | 39 | 3 | 722 | 889 | 40 | 188 | 2.51e-55 | 191 |
MS.gene037340.t1 | MTR_8g465720 | 64.545 | 110 | 38 | 1 | 864 | 973 | 31 | 139 | 1.84e-41 | 150 |
MS.gene037340.t1 | MTR_1g114110 | 72.043 | 93 | 25 | 1 | 55 | 147 | 1 | 92 | 7.55e-33 | 122 |
MS.gene037340.t1 | MTR_3g080750 | 76.190 | 63 | 15 | 0 | 809 | 871 | 86 | 148 | 3.88e-24 | 99.8 |
MS.gene037340.t1 | MTR_5g098590 | 37.569 | 181 | 64 | 8 | 20 | 189 | 1 | 143 | 7.78e-13 | 67.8 |
MS.gene037340.t1 | MTR_6g051930 | 73.171 | 41 | 5 | 1 | 447 | 481 | 33 | 73 | 1.54e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037340.t1 | AT1G11950 | 49.309 | 724 | 320 | 11 | 318 | 1034 | 189 | 872 | 0.0 | 685 |
MS.gene037340.t1 | AT1G11950 | 49.309 | 724 | 320 | 11 | 318 | 1034 | 189 | 872 | 0.0 | 685 |
MS.gene037340.t1 | AT1G62310 | 49.220 | 705 | 323 | 13 | 321 | 1019 | 208 | 883 | 0.0 | 671 |
MS.gene037340.t1 | AT4G00990 | 43.135 | 772 | 352 | 14 | 322 | 1029 | 80 | 828 | 0.0 | 592 |
MS.gene037340.t1 | AT1G11950 | 48.086 | 653 | 292 | 12 | 318 | 963 | 189 | 801 | 0.0 | 588 |
MS.gene037340.t1 | AT3G07610 | 57.582 | 488 | 186 | 4 | 535 | 1022 | 417 | 883 | 0.0 | 573 |
MS.gene037340.t1 | AT3G07610 | 39.556 | 225 | 133 | 2 | 292 | 516 | 127 | 348 | 1.77e-46 | 181 |
MS.gene037340.t1 | AT3G07610 | 54.832 | 507 | 192 | 5 | 535 | 1022 | 417 | 905 | 1.42e-179 | 551 |
MS.gene037340.t1 | AT3G07610 | 39.556 | 225 | 133 | 2 | 292 | 516 | 127 | 348 | 1.87e-46 | 181 |
MS.gene037340.t1 | AT4G00990 | 42.120 | 717 | 328 | 14 | 322 | 974 | 80 | 773 | 5.62e-172 | 523 |
MS.gene037340.t1 | AT4G00990 | 42.297 | 714 | 325 | 14 | 322 | 971 | 80 | 770 | 6.15e-172 | 523 |
MS.gene037340.t1 | AT1G09060 | 33.288 | 742 | 429 | 17 | 315 | 1034 | 197 | 894 | 2.59e-119 | 389 |
MS.gene037340.t1 | AT1G09060 | 33.288 | 742 | 429 | 17 | 315 | 1034 | 197 | 894 | 2.59e-119 | 389 |
MS.gene037340.t1 | AT1G09060 | 33.288 | 742 | 429 | 17 | 315 | 1034 | 211 | 908 | 3.20e-119 | 389 |
MS.gene037340.t1 | AT1G09060 | 33.288 | 742 | 429 | 17 | 315 | 1034 | 211 | 908 | 3.20e-119 | 389 |
MS.gene037340.t1 | AT3G07610 | 56.940 | 281 | 114 | 2 | 535 | 815 | 417 | 690 | 1.09e-96 | 323 |
MS.gene037340.t1 | AT3G07610 | 39.556 | 225 | 133 | 2 | 292 | 516 | 127 | 348 | 2.96e-46 | 179 |
MS.gene037340.t1 | AT4G21430 | 33.333 | 498 | 290 | 7 | 561 | 1029 | 427 | 911 | 1.07e-83 | 291 |
MS.gene037340.t1 | AT4G21430 | 29.747 | 158 | 108 | 3 | 316 | 471 | 221 | 377 | 1.49e-12 | 72.4 |
Find 223 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAATAAAGGTTATTCTTTA+AGG | 0.076090 | 1.3:-77056144 | MS.gene037340:CDS |
GGCCTCCTTCTAATTTATTT+AGG | 0.135585 | 1.3:-77052927 | MS.gene037340:CDS |
TGTCTTGCTCAAGGTGCTTT+TGG | 0.146606 | 1.3:+77052198 | None:intergenic |
TTGCTCGTCTGAAGCATTTA+TGG | 0.202791 | 1.3:+77052106 | None:intergenic |
ATTGATCAGTGAAAAGAATT+TGG | 0.212830 | 1.3:-77056188 | MS.gene037340:CDS |
GCAAAATAGTGTTCGAGTTT+TGG | 0.215510 | 1.3:-77052087 | MS.gene037340:CDS |
TCATCCAATCGTCTTAAATA+TGG | 0.224411 | 1.3:+77055238 | None:intergenic |
GTCGCCCAGATTGGCTTAAT+TGG | 0.224414 | 1.3:-77052975 | MS.gene037340:CDS |
TTTAAATATTCCTCCAATTC+AGG | 0.228132 | 1.3:+77052005 | None:intergenic |
GCCTCCTTCTAATTTATTTA+GGG | 0.243943 | 1.3:-77052926 | MS.gene037340:CDS |
CTTCGTTGTGGGAAGCTTCT+AGG | 0.247218 | 1.3:-77054692 | MS.gene037340:CDS |
GCTTGATGTGGTTAACAAAT+TGG | 0.261966 | 1.3:-77048207 | MS.gene037340:CDS |
AATGTGCACCAATTCTTTAC+TGG | 0.265399 | 1.3:-77053009 | MS.gene037340:CDS |
CCACAATCATCATCGGCTTT+TGG | 0.278197 | 1.3:+77054500 | None:intergenic |
CTGACATTGATGGCACATTA+AGG | 0.293064 | 1.3:+77055909 | None:intergenic |
AGTACATTGCTGATAATTAC+AGG | 0.293307 | 1.3:+77054188 | None:intergenic |
GGATCTGTATATTCTTTATA+CGG | 0.299317 | 1.3:+77052862 | None:intergenic |
TACCAAGCACAAAACACTTT+TGG | 0.300838 | 1.3:-77054099 | MS.gene037340:CDS |
ATTCTTTAGATGGTGCTCTC+TGG | 0.323154 | 1.3:-77052052 | MS.gene037340:CDS |
GCATACCTTGTTTAAACAAT+TGG | 0.324245 | 1.3:-77055831 | MS.gene037340:intron |
AGAAGCATTTCAGAGAGTTT+AGG | 0.334304 | 1.3:-77051983 | MS.gene037340:CDS |
TGTCATTTCTCTGACATTGA+TGG | 0.335478 | 1.3:+77055899 | None:intergenic |
GGAAGATTACGTGTCAGATT+TGG | 0.338618 | 1.3:-77056428 | MS.gene037340:CDS |
TTGGTGGACCTGTGGTTTAT+CGG | 0.340425 | 1.3:+77049169 | None:intergenic |
CAAGGCCGTGATTATCTTCA+TGG | 0.341964 | 1.3:-77054635 | MS.gene037340:CDS |
AGAAGAAACCTGGTAGAAAA+AGG | 0.348376 | 1.3:-77056294 | MS.gene037340:CDS |
AATAGGGGTGATTCTTTAGA+TGG | 0.356154 | 1.3:-77052062 | MS.gene037340:CDS |
ATATCAGTTGCATTCCTAAC+AGG | 0.357202 | 1.3:+77054338 | None:intergenic |
ACTAACTCAGAGATGCAATT+TGG | 0.359225 | 1.3:+77054443 | None:intergenic |
CTCGAACTCATGGTTGTTGT+TGG | 0.375822 | 1.3:+77055291 | None:intergenic |
TTTGTGAGTGGTCAAGATTC+GGG | 0.378563 | 1.3:-77054556 | MS.gene037340:CDS |
AGGAAACTTAAGGAGGAGTA+TGG | 0.381395 | 1.3:-77049874 | MS.gene037340:intron |
CTTTCCCTAAATAAATTAGA+AGG | 0.387657 | 1.3:+77052922 | None:intergenic |
ATGACGTAAATTTAAAGCTC+TGG | 0.387898 | 1.3:+77054253 | None:intergenic |
CGCGGAAACGGTACCGTTGA+AGG | 0.390300 | 1.3:-77056860 | MS.gene037340:CDS |
TGATCAGGAATGGATTCATC+TGG | 0.392651 | 1.3:+77056919 | None:intergenic |
AAGAGGGTGAGGAAAAGAAT+TGG | 0.395670 | 1.3:-77056534 | MS.gene037340:CDS |
TGAGGCCAATTAAGCCAATC+TGG | 0.400800 | 1.3:+77052970 | None:intergenic |
ATCTGACTCGAGAGCATAAG+AGG | 0.403353 | 1.3:-77049894 | MS.gene037340:CDS |
GTTCTTGTTTGAAGCCTGTT+AGG | 0.405975 | 1.3:-77054352 | MS.gene037340:CDS |
ATGCTCTCGAGTCAGATAAA+AGG | 0.409436 | 1.3:+77049900 | None:intergenic |
TCTGACTTGGTGAGGACAAC+CGG | 0.410174 | 1.3:+77049681 | None:intergenic |
AAGATAAACTCAAACTCAAT+TGG | 0.413084 | 1.3:+77054659 | None:intergenic |
TTCAATGGCACTGGAGCAAA+GGG | 0.413215 | 1.3:-77054214 | MS.gene037340:CDS |
CTTCCGGTTGTGTGAGAAAG+AGG | 0.414317 | 1.3:-77056480 | MS.gene037340:CDS |
TTCTTTAGATGGTGCTCTCT+GGG | 0.419089 | 1.3:-77052051 | MS.gene037340:CDS |
GAGAGAGGATGTACCTGAAT+TGG | 0.421371 | 1.3:-77052018 | MS.gene037340:CDS |
TATGGATTTGCTCAGGAGCT+TGG | 0.422137 | 1.3:-77052757 | MS.gene037340:CDS |
TTCTTTACTGGGTACACAAA+TGG | 0.422160 | 1.3:-77052997 | MS.gene037340:CDS |
AATGTACTTGAATGTACAAC+TGG | 0.424187 | 1.3:-77054173 | MS.gene037340:CDS |
ATTTGTGAGTGGTCAAGATT+CGG | 0.429286 | 1.3:-77054557 | MS.gene037340:CDS |
TCTTCCATATTTAAGACGAT+TGG | 0.429788 | 1.3:-77055242 | MS.gene037340:CDS |
TTGTGTACCCAGTAAAGAAT+TGG | 0.434568 | 1.3:+77053001 | None:intergenic |
AGAGGGTGAGGAAAAGAATT+GGG | 0.444632 | 1.3:-77056533 | MS.gene037340:CDS |
CAAAGTCACACTCACCGTTC+CGG | 0.446960 | 1.3:-77056944 | MS.gene037340:CDS |
AAGTTCTTTCAGCATATACT+TGG | 0.448229 | 1.3:+77055264 | None:intergenic |
AATGTACAACTGGTTTAAGC+TGG | 0.448278 | 1.3:-77054163 | MS.gene037340:CDS |
TGCCAATGTTGGCGCGGAAA+CGG | 0.450167 | 1.3:-77056872 | MS.gene037340:CDS |
AGCTGATGACATGGCAGCTA+AGG | 0.454453 | 1.3:-77056659 | MS.gene037340:CDS |
TTGCCTCTTTCTCACACAAC+CGG | 0.456045 | 1.3:+77056477 | None:intergenic |
GAAGAAGAAGGTCATAATTG+AGG | 0.456146 | 1.3:-77056371 | MS.gene037340:CDS |
AAGAACTCGAAGAAACAATT+AGG | 0.456155 | 1.3:-77054409 | MS.gene037340:CDS |
AGAGCATAAGAGGAAACTTA+AGG | 0.461052 | 1.3:-77049884 | MS.gene037340:CDS |
CTGCTTTAAAGGAGAGCAAT+GGG | 0.464779 | 1.3:+77051956 | None:intergenic |
TGAGAAAGAGGCAAAGGCCT+AGG | 0.465093 | 1.3:-77056468 | MS.gene037340:CDS |
AGATTGGCTTAATTGGCCTC+AGG | 0.465478 | 1.3:-77052968 | MS.gene037340:CDS |
GAGATAGAAGCAAAGAGAAA+AGG | 0.470722 | 1.3:-77055196 | MS.gene037340:intron |
CATGAAGATAATCACGGCCT+TGG | 0.473194 | 1.3:+77054636 | None:intergenic |
TGCTTGTAGGAATCGAGCCT+TGG | 0.475187 | 1.3:-77049744 | MS.gene037340:intron |
ACACAAATGGTCGCCCAGAT+TGG | 0.475261 | 1.3:-77052984 | MS.gene037340:CDS |
GACAGTTTATAGTTCGGAAG+AGG | 0.480891 | 1.3:-77056551 | MS.gene037340:CDS |
TGACGTAAATTTAAAGCTCT+GGG | 0.482957 | 1.3:+77054254 | None:intergenic |
GTCAGAGAAATGACAAGGGC+AGG | 0.483009 | 1.3:-77055891 | MS.gene037340:CDS |
ACCACTCACAAATCTCAGGC+TGG | 0.483334 | 1.3:+77054567 | None:intergenic |
TATTGCTTATGGATTTGCTC+AGG | 0.486399 | 1.3:-77052764 | MS.gene037340:CDS |
AGGCAATTGATTGCTTAGAT+TGG | 0.486412 | 1.3:-77054070 | MS.gene037340:CDS |
TGTGGTTTATCGGAAGCTTA+CGG | 0.487799 | 1.3:+77049179 | None:intergenic |
GTTTCTCGACGATCATGATC+AGG | 0.488002 | 1.3:+77056904 | None:intergenic |
ACGATTGGATGAAGAACAAA+TGG | 0.491089 | 1.3:-77055227 | MS.gene037340:CDS |
ATGTGCACCAATTCTTTACT+GGG | 0.492244 | 1.3:-77053008 | MS.gene037340:CDS |
AGCTTTAAATTTACGTCATG+AGG | 0.498076 | 1.3:-77054249 | MS.gene037340:CDS |
CTCGAGTCAGATAAAAGGTC+TGG | 0.498993 | 1.3:+77049905 | None:intergenic |
TAGGAAGATTAAATCGTTGA+AGG | 0.499461 | 1.3:-77056449 | MS.gene037340:CDS |
TTACCTTTAGATTTCTGACT+TGG | 0.503046 | 1.3:+77049668 | None:intergenic |
GACCTCCAACCTGTCCTTGG+TGG | 0.508939 | 1.3:+77049153 | None:intergenic |
TTCAACGATTTAATCTTCCT+AGG | 0.509264 | 1.3:+77056451 | None:intergenic |
GCTTGGTATTTCTTATCTGA+CGG | 0.510840 | 1.3:+77054114 | None:intergenic |
ACCTGTCCTTGGTGGACCTG+TGG | 0.512572 | 1.3:+77049161 | None:intergenic |
CTTGACCACTCACAAATCTC+AGG | 0.514084 | 1.3:+77054563 | None:intergenic |
ACAGACCTCCAACCTGTCCT+TGG | 0.514908 | 1.3:+77049150 | None:intergenic |
TTTCAATGGCACTGGAGCAA+AGG | 0.515097 | 1.3:-77054215 | MS.gene037340:CDS |
AGATTACGTGTCAGATTTGG+AGG | 0.516385 | 1.3:-77056425 | MS.gene037340:CDS |
GTTGTTGTGAGCTTCGTTGT+GGG | 0.519321 | 1.3:-77054703 | MS.gene037340:CDS |
GCTCCCTCTTGTCTTGCTCA+AGG | 0.519343 | 1.3:+77052189 | None:intergenic |
TCGACGATCATGATCAGGAA+TGG | 0.519620 | 1.3:+77056909 | None:intergenic |
TACCGTTTCCGCGCCAACAT+TGG | 0.523494 | 1.3:+77056870 | None:intergenic |
TACGGAATTCCTCAGTCAAA+CGG | 0.525984 | 1.3:+77049197 | None:intergenic |
GAGTTTGAGTTTATCTTCCA+AGG | 0.526474 | 1.3:-77054653 | MS.gene037340:CDS |
AAGACAGAGCAGAAGAAACC+TGG | 0.528230 | 1.3:-77056304 | MS.gene037340:CDS |
TTATAGTTCGGAAGAGGGTG+AGG | 0.529955 | 1.3:-77056545 | MS.gene037340:CDS |
TTGTAGTCATGCATCAAGGT+TGG | 0.532619 | 1.3:-77049259 | MS.gene037340:intron |
GAAGTATGCTTCTCAGTTCG+AGG | 0.532683 | 1.3:+77054468 | None:intergenic |
TATCGGTGTTAGAGCTGAAA+CGG | 0.532983 | 1.3:-77056818 | MS.gene037340:CDS |
GGAATGGATTCATCTGGGTC+CGG | 0.533236 | 1.3:+77056925 | None:intergenic |
GAAGGTGCTGACGTGGAAGA+AGG | 0.533445 | 1.3:-77056511 | MS.gene037340:CDS |
TGTATATTCTTTATACGGCA+AGG | 0.541667 | 1.3:+77052867 | None:intergenic |
TGCCATGTCATCAGCTTCAA+CGG | 0.544773 | 1.3:+77056666 | None:intergenic |
CCATTGCTCTCCTTTAAAGC+AGG | 0.546741 | 1.3:-77051955 | MS.gene037340:intron |
AACTCAGAGATGCAATTTGG+TGG | 0.548310 | 1.3:+77054446 | None:intergenic |
TGAGATGCACAAAATGCAAA+CGG | 0.552047 | 1.3:-77055864 | MS.gene037340:CDS |
ATAAAAGGTCTGGTCGTGGA+TGG | 0.552092 | 1.3:+77049915 | None:intergenic |
GCGTTGTTGAACAACGATGA+AGG | 0.552811 | 1.3:-77056796 | MS.gene037340:CDS |
CCTGCTTTAAAGGAGAGCAA+TGG | 0.552913 | 1.3:+77051955 | None:intergenic |
GCCGATGATGATTGTGGTCA+TGG | 0.553086 | 1.3:-77054494 | MS.gene037340:CDS |
TTGTTGTCGACGGACGATGA+AGG | 0.553268 | 1.3:-77056691 | MS.gene037340:CDS |
ACTTGGAGAGCTCGAACTCA+TGG | 0.555503 | 1.3:+77055281 | None:intergenic |
TCACCAAGTCAGAAATCTAA+AGG | 0.555814 | 1.3:-77049671 | MS.gene037340:intron |
AGAGGATGTACCTGAATTGG+AGG | 0.558183 | 1.3:-77052015 | MS.gene037340:CDS |
AGGTTAAGAATGCCTTTGAA+AGG | 0.562396 | 1.3:+77052841 | None:intergenic |
ACCACAGGTCCACCAAGGAC+AGG | 0.565099 | 1.3:-77049162 | MS.gene037340:CDS |
ATTAAAGAGAAGAAGAGAGC+TGG | 0.566428 | 1.3:-77056589 | MS.gene037340:CDS |
GGAATACAAGAAGTTGTCAC+TGG | 0.567927 | 1.3:+77054277 | None:intergenic |
TCAGGCTGGGCAGCAGAATG+AGG | 0.568737 | 1.3:+77054581 | None:intergenic |
GAATGATGAAGCTGAACAAG+AGG | 0.569424 | 1.3:-77056338 | MS.gene037340:CDS |
TGTTGTTGTGAGCTTCGTTG+TGG | 0.569590 | 1.3:-77054704 | MS.gene037340:CDS |
GCACCTTGAGCAAGACAAGA+GGG | 0.570458 | 1.3:-77052192 | MS.gene037340:CDS |
ATGTACAACTGGTTTAAGCT+GGG | 0.570533 | 1.3:-77054162 | MS.gene037340:CDS |
TGAAGCTGAACAAGAGGAGG+AGG | 0.572752 | 1.3:-77056332 | MS.gene037340:CDS |
GTTGTCACTGGAATCTTCAC+GGG | 0.575662 | 1.3:+77054289 | None:intergenic |
GAATATACAGATCCTTTCAA+AGG | 0.575964 | 1.3:-77052853 | MS.gene037340:CDS |
GCGGAAACGGTACCGTTGAA+GGG | 0.579178 | 1.3:-77056859 | MS.gene037340:CDS |
TAAAAGGTCTGGTCGTGGAT+GGG | 0.579331 | 1.3:+77049916 | None:intergenic |
AGTTGTCACTGGAATCTTCA+CGG | 0.579890 | 1.3:+77054288 | None:intergenic |
TTGTACCAATTGTTTAAACA+AGG | 0.581322 | 1.3:+77055826 | None:intergenic |
ACAGTTTATAGTTCGGAAGA+GGG | 0.583088 | 1.3:-77056550 | MS.gene037340:CDS |
AAGGTATCCTCACTTGAAAG+AGG | 0.584254 | 1.3:-77055497 | MS.gene037340:CDS |
GATGACGTGGCACAAGCTAT+CGG | 0.585670 | 1.3:-77056835 | MS.gene037340:CDS |
TCTTTCAATTTCAAAACCTG+AGG | 0.586296 | 1.3:+77052952 | None:intergenic |
CTACATGGTGATAATCGAGA+TGG | 0.586913 | 1.3:-77052167 | MS.gene037340:CDS |
TCAGATAAAAGGTCTGGTCG+TGG | 0.587061 | 1.3:+77049911 | None:intergenic |
ATTTGAAATTTCAATGGCGG+AGG | 0.588198 | 1.3:-77057004 | None:intergenic |
ACTTGGTGAGGACAACCGGC+AGG | 0.588247 | 1.3:+77049685 | None:intergenic |
CCACTCACAAATCTCAGGCT+GGG | 0.588333 | 1.3:+77054568 | None:intergenic |
TTTAGATTTCTGACTTGGTG+AGG | 0.588372 | 1.3:+77049673 | None:intergenic |
GAGGCCAATTAAGCCAATCT+GGG | 0.589315 | 1.3:+77052971 | None:intergenic |
TTTGTCTCACCTGAAAATGT+TGG | 0.589435 | 1.3:-77049229 | MS.gene037340:CDS |
CAAGACAAGAGGGAGCTACA+TGG | 0.591607 | 1.3:-77052182 | MS.gene037340:CDS |
TCCCTAAATAAATTAGAAGG+AGG | 0.592028 | 1.3:+77052925 | None:intergenic |
CAATTAACAGTGGATTGAAG+AGG | 0.593067 | 1.3:-77055935 | MS.gene037340:intron |
AGCTTCTGAATAAAAGTCCA+AGG | 0.593398 | 1.3:+77049727 | None:intergenic |
GCTGGGAACCGCTTGTCATG+TGG | 0.594440 | 1.3:-77054145 | MS.gene037340:CDS |
TTTGCTCAGGAGCTTGGACG+TGG | 0.595460 | 1.3:-77052751 | MS.gene037340:CDS |
GTCCACCAAGGACAGGTTGG+AGG | 0.596001 | 1.3:-77049155 | MS.gene037340:intron |
AAATGTTCTAAAGCCAGACA+TGG | 0.598652 | 1.3:-77052800 | MS.gene037340:CDS |
ACACAACCTACTGCCAATGT+TGG | 0.598702 | 1.3:-77056883 | MS.gene037340:CDS |
TGAAGAACAAATGGTCGAGA+AGG | 0.598904 | 1.3:-77055218 | MS.gene037340:CDS |
TCCGCGCCAACATTGGCAGT+AGG | 0.599431 | 1.3:+77056877 | None:intergenic |
AACGGTGGTGTTGTTGTCGA+CGG | 0.600381 | 1.3:-77056701 | MS.gene037340:CDS |
GAATTGGGAAGGTGCTGACG+TGG | 0.602384 | 1.3:-77056518 | MS.gene037340:CDS |
ACCTACTGCCAATGTTGGCG+CGG | 0.602878 | 1.3:-77056878 | MS.gene037340:CDS |
CAGGTCCACCAAGGACAGGT+TGG | 0.604718 | 1.3:-77049158 | MS.gene037340:CDS |
CAATGCTGAACAAGAGTGTG+AGG | 0.604968 | 1.3:-77056623 | MS.gene037340:CDS |
GAAACGTGGTAGGAAGAAGA+AGG | 0.606573 | 1.3:-77056383 | MS.gene037340:CDS |
GGTGAGGAAAAGAATTGGGA+AGG | 0.609015 | 1.3:-77056529 | MS.gene037340:CDS |
GGTGCTGACGTGGAAGAAGG+AGG | 0.610124 | 1.3:-77056508 | MS.gene037340:CDS |
ACCATGACCACAATCATCAT+CGG | 0.612092 | 1.3:+77054493 | None:intergenic |
ACGTAAATTTAAAGCTCTGG+GGG | 0.612630 | 1.3:+77054256 | None:intergenic |
TTACGTGTCAGATTTGGAGG+AGG | 0.613999 | 1.3:-77056422 | MS.gene037340:CDS |
AAATGACGAAGATGAACAAG+AGG | 0.614355 | 1.3:-77056248 | MS.gene037340:CDS |
GATCAGGAATGGATTCATCT+GGG | 0.615316 | 1.3:+77056920 | None:intergenic |
ACTTCCTCCTCTTTCAAGTG+AGG | 0.615486 | 1.3:+77055490 | None:intergenic |
AGCACCTTGAGCAAGACAAG+AGG | 0.618569 | 1.3:-77052193 | MS.gene037340:CDS |
GGATTCATCTGGGTCCGGAA+CGG | 0.621269 | 1.3:+77056930 | None:intergenic |
TGATGAAGCTGAACAAGAGG+AGG | 0.621390 | 1.3:-77056335 | MS.gene037340:CDS |
TTCCGTTGAAGCTGATGACA+TGG | 0.621539 | 1.3:-77056668 | MS.gene037340:CDS |
TTCATGGTGGAAAAGAAGAG+AGG | 0.621997 | 1.3:-77054619 | MS.gene037340:CDS |
AATTAGGCTTCAAGATGCAG+AGG | 0.623081 | 1.3:-77054393 | MS.gene037340:CDS |
TTGCAATTACCACAGCACAC+TGG | 0.624403 | 1.3:+77055454 | None:intergenic |
TCAGAGAAATGACAAGGGCA+GGG | 0.624776 | 1.3:-77055890 | MS.gene037340:CDS |
TTTCAGGCAACTTCACAGCA+AGG | 0.625295 | 1.3:+77052821 | None:intergenic |
TCATGGTGGAAAAGAAGAGA+GGG | 0.625856 | 1.3:-77054618 | MS.gene037340:CDS |
GTTGTGTGAGAAAGAGGCAA+AGG | 0.627339 | 1.3:-77056474 | MS.gene037340:CDS |
TGAAGTGAAATTGAAATCTG+AGG | 0.628039 | 1.3:-77052246 | MS.gene037340:CDS |
AATAAACAAACGGAATCCAA+AGG | 0.628262 | 1.3:-77056074 | MS.gene037340:intron |
GAAGTGAAATTGAAATCTGA+GGG | 0.629648 | 1.3:-77052245 | MS.gene037340:CDS |
TTCCACCATGAAGATAATCA+CGG | 0.630533 | 1.3:+77054630 | None:intergenic |
TTAACAAATTGGAGAAAACA+AGG | 0.631124 | 1.3:-77048196 | MS.gene037340:CDS |
GCCACGTCATCACCCTTCAA+CGG | 0.632095 | 1.3:+77056847 | None:intergenic |
GTAAGCTTCCGATAAACCAC+AGG | 0.632121 | 1.3:-77049177 | MS.gene037340:CDS |
CCAAAAGCCGATGATGATTG+TGG | 0.633999 | 1.3:-77054500 | MS.gene037340:CDS |
GTGCTGACGTGGAAGAAGGA+GGG | 0.635869 | 1.3:-77056507 | MS.gene037340:CDS |
TATACACAATAACACAAGGA+AGG | 0.636388 | 1.3:-77054318 | MS.gene037340:CDS |
TATATATGCTATGCTTGATG+TGG | 0.638461 | 1.3:-77048219 | MS.gene037340:CDS |
GAAAGAGGAGGAAGTTGCTG+AGG | 0.638538 | 1.3:-77055482 | MS.gene037340:CDS |
GGGTGGCATGCAGATAGTGA+TGG | 0.640615 | 1.3:-77054536 | MS.gene037340:CDS |
GTATCCTCACTTGAAAGAGG+AGG | 0.641340 | 1.3:-77055494 | MS.gene037340:CDS |
ACCGTTGAAGGGTGATGACG+TGG | 0.641508 | 1.3:-77056848 | MS.gene037340:CDS |
TGACGAAGATGAACAAGAGG+GGG | 0.641516 | 1.3:-77056245 | MS.gene037340:CDS |
CTGATATACACAATAACACA+AGG | 0.643123 | 1.3:-77054322 | MS.gene037340:CDS |
TCACTGTATATGTGACTGTG+TGG | 0.644617 | 1.3:+77056971 | None:intergenic |
GAGGCATGTCCAGTGTGCTG+TGG | 0.646992 | 1.3:-77055463 | MS.gene037340:CDS |
GACGTAAATTTAAAGCTCTG+GGG | 0.647211 | 1.3:+77054255 | None:intergenic |
CCACTGTAATATGTCTGATG+CGG | 0.649776 | 1.3:-77052710 | MS.gene037340:intron |
CGTTGTGGGAAGCTTCTAGG+TGG | 0.657294 | 1.3:-77054689 | MS.gene037340:CDS |
ATTATCAAACATGTCAACGT+TGG | 0.657373 | 1.3:+77052139 | None:intergenic |
AATGTTCTAAAGCCAGACAT+GGG | 0.657555 | 1.3:-77052799 | MS.gene037340:CDS |
TCAATGTCAGAGAAATGACA+AGG | 0.658738 | 1.3:-77055896 | MS.gene037340:CDS |
AATGACGAAGATGAACAAGA+GGG | 0.659397 | 1.3:-77056247 | MS.gene037340:CDS |
GCATAAGAGGAAACTTAAGG+AGG | 0.660443 | 1.3:-77049881 | MS.gene037340:CDS |
GTGAGTGGTCAAGATTCGGG+TGG | 0.671679 | 1.3:-77054553 | MS.gene037340:CDS |
GGCCGTGATTATCTTCATGG+TGG | 0.676321 | 1.3:-77054632 | MS.gene037340:CDS |
CCCAGCCTGAGATTTGTGAG+TGG | 0.676512 | 1.3:-77054568 | MS.gene037340:CDS |
AATGCACGCCACATGACAAG+CGG | 0.682465 | 1.3:+77054137 | None:intergenic |
TGAGTGCTTCCGTTTGACTG+AGG | 0.694932 | 1.3:-77049206 | MS.gene037340:CDS |
ATGACGAAGATGAACAAGAG+GGG | 0.700639 | 1.3:-77056246 | MS.gene037340:CDS |
TGATTGCTTAGATTGGTGTG+AGG | 0.703268 | 1.3:-77054063 | MS.gene037340:intron |
ATGAACTCAGCACAATGACG+AGG | 0.704061 | 1.3:+77052895 | None:intergenic |
CAACGATGAAGGTGATGACG+TGG | 0.706445 | 1.3:-77056785 | MS.gene037340:CDS |
GATAAACCACAGGTCCACCA+AGG | 0.718071 | 1.3:-77049167 | MS.gene037340:CDS |
CAATGTCAGAGAAATGACAA+GGG | 0.723230 | 1.3:-77055895 | MS.gene037340:CDS |
CCGCATCAGACATATTACAG+TGG | 0.743850 | 1.3:+77052710 | None:intergenic |
CGATGAAGGTGATGACGTGG+TGG | 0.749030 | 1.3:-77056782 | MS.gene037340:CDS |
TCAATGGCACTGGAGCAAAG+GGG | 0.769506 | 1.3:-77054213 | MS.gene037340:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 77048187 | 77057013 | 77048187 | ID=MS.gene037340 |
chr1.3 | mRNA | 77048187 | 77057013 | 77048187 | ID=MS.gene037340.t1;Parent=MS.gene037340 |
chr1.3 | exon | 77056075 | 77057013 | 77056075 | ID=MS.gene037340.t1.exon1;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77056075 | 77057013 | 77056075 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77055832 | 77055947 | 77055832 | ID=MS.gene037340.t1.exon2;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77055832 | 77055947 | 77055832 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77055417 | 77055516 | 77055417 | ID=MS.gene037340.t1.exon3;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77055417 | 77055516 | 77055417 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77055197 | 77055335 | 77055197 | ID=MS.gene037340.t1.exon4;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77055197 | 77055335 | 77055197 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77054889 | 77054952 | 77054889 | ID=MS.gene037340.t1.exon5;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77054889 | 77054952 | 77054889 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77054064 | 77054799 | 77054064 | ID=MS.gene037340.t1.exon6;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77054064 | 77054799 | 77054064 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77052711 | 77053040 | 77052711 | ID=MS.gene037340.t1.exon7;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77052711 | 77053040 | 77052711 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77051956 | 77052291 | 77051956 | ID=MS.gene037340.t1.exon8;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77051956 | 77052291 | 77051956 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77049875 | 77049947 | 77049875 | ID=MS.gene037340.t1.exon9;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77049875 | 77049947 | 77049875 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77049672 | 77049757 | 77049672 | ID=MS.gene037340.t1.exon10;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77049672 | 77049757 | 77049672 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77049156 | 77049275 | 77049156 | ID=MS.gene037340.t1.exon11;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77049156 | 77049275 | 77049156 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
chr1.3 | exon | 77048187 | 77048255 | 77048187 | ID=MS.gene037340.t1.exon12;Parent=MS.gene037340.t1 |
chr1.3 | CDS | 77048187 | 77048255 | 77048187 | ID=cds.MS.gene037340.t1;Parent=MS.gene037340.t1 |
Gene Sequence |
Protein sequence |