Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037342.t1 | RHN82614.1 | 93.9 | 718 | 42 | 1 | 1 | 718 | 335 | 1050 | 0.00E+00 | 1420.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037342.t1 | Q9SSE9 | 49.5 | 752 | 307 | 6 | 8 | 708 | 154 | 883 | 3.3e-207 | 723.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037342.t1 | G7IE70 | 93.9 | 718 | 42 | 1 | 1 | 718 | 335 | 1050 | 0.0e+00 | 1420.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037342.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037342.t1 | MTR_1g114150 | 93.872 | 718 | 42 | 1 | 1 | 718 | 335 | 1050 | 0.0 | 1415 |
| MS.gene037342.t1 | MTR_1g114130 | 86.528 | 720 | 95 | 2 | 1 | 718 | 319 | 1038 | 0.0 | 1286 |
| MS.gene037342.t1 | MTR_1g069565 | 80.053 | 752 | 115 | 4 | 2 | 718 | 130 | 881 | 0.0 | 1194 |
| MS.gene037342.t1 | MTR_1g114150 | 93.245 | 607 | 39 | 1 | 1 | 607 | 335 | 939 | 0.0 | 1191 |
| MS.gene037342.t1 | MTR_1g069565 | 73.424 | 809 | 123 | 6 | 2 | 718 | 130 | 938 | 0.0 | 1146 |
| MS.gene037342.t1 | MTR_1g114070 | 74.965 | 719 | 168 | 4 | 1 | 718 | 217 | 924 | 0.0 | 1088 |
| MS.gene037342.t1 | MTR_5g065200 | 74.444 | 720 | 165 | 4 | 1 | 718 | 132 | 834 | 0.0 | 1072 |
| MS.gene037342.t1 | MTR_5g047620 | 70.871 | 666 | 169 | 8 | 72 | 718 | 138 | 797 | 0.0 | 934 |
| MS.gene037342.t1 | MTR_0020s0100 | 64.417 | 652 | 170 | 10 | 72 | 701 | 80 | 691 | 0.0 | 815 |
| MS.gene037342.t1 | MTR_7g117445 | 46.601 | 809 | 317 | 17 | 5 | 717 | 136 | 925 | 0.0 | 666 |
| MS.gene037342.t1 | MTR_7g117445 | 46.601 | 809 | 317 | 17 | 5 | 717 | 136 | 925 | 0.0 | 666 |
| MS.gene037342.t1 | MTR_7g117445 | 46.601 | 809 | 317 | 17 | 5 | 717 | 136 | 925 | 0.0 | 665 |
| MS.gene037342.t1 | MTR_4g132540 | 47.130 | 749 | 317 | 15 | 2 | 716 | 161 | 864 | 0.0 | 644 |
| MS.gene037342.t1 | MTR_2g024270 | 49.440 | 714 | 317 | 11 | 3 | 716 | 148 | 817 | 0.0 | 634 |
| MS.gene037342.t1 | MTR_2g024140 | 47.838 | 717 | 314 | 12 | 2 | 716 | 27 | 685 | 0.0 | 608 |
| MS.gene037342.t1 | MTR_7g117445 | 44.993 | 749 | 297 | 17 | 5 | 657 | 136 | 865 | 0.0 | 587 |
| MS.gene037342.t1 | MTR_1g083120 | 37.500 | 744 | 381 | 16 | 9 | 717 | 198 | 892 | 7.41e-152 | 465 |
| MS.gene037342.t1 | MTR_1g083120 | 37.500 | 744 | 381 | 16 | 9 | 717 | 215 | 909 | 7.83e-152 | 465 |
| MS.gene037342.t1 | MTR_2g011630 | 34.338 | 763 | 433 | 12 | 9 | 717 | 207 | 955 | 4.06e-137 | 427 |
| MS.gene037342.t1 | MTR_1g008060 | 46.828 | 536 | 246 | 11 | 3 | 532 | 864 | 1366 | 2.22e-136 | 440 |
| MS.gene037342.t1 | MTR_1g008060 | 74.265 | 136 | 35 | 0 | 572 | 707 | 1551 | 1686 | 2.49e-60 | 221 |
| MS.gene037342.t1 | MTR_1g008060 | 46.828 | 536 | 246 | 11 | 3 | 532 | 855 | 1357 | 2.26e-136 | 440 |
| MS.gene037342.t1 | MTR_1g008060 | 74.265 | 136 | 35 | 0 | 572 | 707 | 1542 | 1677 | 2.48e-60 | 221 |
| MS.gene037342.t1 | MTR_1g083120 | 37.172 | 686 | 347 | 16 | 9 | 659 | 198 | 834 | 4.11e-134 | 416 |
| MS.gene037342.t1 | MTR_1g083120 | 37.172 | 686 | 347 | 16 | 9 | 659 | 198 | 834 | 4.56e-134 | 416 |
| MS.gene037342.t1 | MTR_2g011630 | 34.706 | 680 | 378 | 10 | 91 | 717 | 45 | 711 | 2.91e-124 | 387 |
| MS.gene037342.t1 | MTR_2g011630 | 34.706 | 680 | 378 | 10 | 91 | 717 | 77 | 743 | 5.23e-124 | 387 |
| MS.gene037342.t1 | MTR_8g062940 | 53.406 | 367 | 137 | 5 | 9 | 373 | 33 | 367 | 7.42e-114 | 348 |
| MS.gene037342.t1 | MTR_2g024240 | 59.000 | 300 | 96 | 4 | 384 | 681 | 114 | 388 | 9.07e-112 | 343 |
| MS.gene037342.t1 | MTR_4g091520 | 42.345 | 307 | 162 | 6 | 223 | 523 | 650 | 947 | 4.92e-66 | 237 |
| MS.gene037342.t1 | MTR_4g091520 | 34.286 | 175 | 105 | 4 | 9 | 174 | 260 | 433 | 7.33e-27 | 117 |
| MS.gene037342.t1 | MTR_4g091520 | 39.823 | 113 | 57 | 3 | 534 | 638 | 1017 | 1126 | 1.24e-12 | 72.0 |
| MS.gene037342.t1 | MTR_4g091520 | 42.345 | 307 | 162 | 6 | 223 | 523 | 685 | 982 | 5.10e-66 | 237 |
| MS.gene037342.t1 | MTR_4g091520 | 34.286 | 175 | 105 | 4 | 9 | 174 | 260 | 433 | 6.62e-27 | 117 |
| MS.gene037342.t1 | MTR_4g091520 | 39.823 | 113 | 57 | 3 | 534 | 638 | 1052 | 1161 | 1.17e-12 | 72.0 |
| MS.gene037342.t1 | MTR_4g091520 | 42.345 | 307 | 162 | 6 | 223 | 523 | 720 | 1017 | 5.48e-66 | 237 |
| MS.gene037342.t1 | MTR_4g091520 | 34.286 | 175 | 105 | 4 | 9 | 174 | 260 | 433 | 6.18e-27 | 118 |
| MS.gene037342.t1 | MTR_4g091520 | 39.823 | 113 | 57 | 3 | 534 | 638 | 1087 | 1196 | 1.06e-12 | 72.4 |
| MS.gene037342.t1 | MTR_4g091520 | 42.345 | 307 | 162 | 6 | 223 | 523 | 720 | 1017 | 7.84e-66 | 237 |
| MS.gene037342.t1 | MTR_4g091520 | 46.354 | 192 | 94 | 2 | 534 | 717 | 1087 | 1277 | 8.57e-45 | 174 |
| MS.gene037342.t1 | MTR_4g091520 | 34.286 | 175 | 105 | 4 | 9 | 174 | 260 | 433 | 7.58e-27 | 117 |
| MS.gene037342.t1 | MTR_0295s0020 | 60.556 | 180 | 68 | 1 | 368 | 547 | 8 | 184 | 9.52e-64 | 210 |
| MS.gene037342.t1 | MTR_8g465700 | 55.000 | 180 | 77 | 2 | 317 | 496 | 2 | 177 | 6.95e-59 | 200 |
| MS.gene037342.t1 | MTR_8g013920 | 64.881 | 168 | 39 | 4 | 409 | 575 | 40 | 188 | 5.27e-53 | 181 |
| MS.gene037342.t1 | MTR_8g465720 | 61.667 | 120 | 44 | 2 | 541 | 659 | 21 | 139 | 3.05e-42 | 151 |
| MS.gene037342.t1 | MTR_3g080750 | 77.778 | 63 | 13 | 1 | 496 | 557 | 86 | 148 | 6.15e-24 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037342.t1 | AT3G07610 | 50.133 | 752 | 302 | 8 | 8 | 708 | 154 | 883 | 0.0 | 714 |
| MS.gene037342.t1 | AT1G11950 | 50.838 | 716 | 312 | 12 | 5 | 716 | 189 | 868 | 0.0 | 696 |
| MS.gene037342.t1 | AT1G11950 | 50.838 | 716 | 312 | 12 | 5 | 716 | 189 | 868 | 0.0 | 696 |
| MS.gene037342.t1 | AT3G07610 | 48.508 | 771 | 308 | 9 | 8 | 708 | 154 | 905 | 0.0 | 693 |
| MS.gene037342.t1 | AT1G62310 | 50.930 | 699 | 309 | 13 | 8 | 700 | 208 | 878 | 0.0 | 679 |
| MS.gene037342.t1 | AT1G11950 | 48.844 | 649 | 292 | 12 | 5 | 649 | 189 | 801 | 0.0 | 593 |
| MS.gene037342.t1 | AT4G00990 | 43.943 | 776 | 341 | 16 | 9 | 716 | 80 | 829 | 0.0 | 587 |
| MS.gene037342.t1 | AT4G00990 | 42.621 | 725 | 322 | 16 | 9 | 665 | 80 | 778 | 4.10e-175 | 520 |
| MS.gene037342.t1 | AT4G00990 | 42.957 | 717 | 315 | 16 | 9 | 657 | 80 | 770 | 4.10e-174 | 518 |
| MS.gene037342.t1 | AT3G07610 | 46.606 | 545 | 233 | 6 | 8 | 502 | 154 | 690 | 9.66e-155 | 467 |
| MS.gene037342.t1 | AT1G09060 | 33.199 | 747 | 416 | 18 | 2 | 717 | 197 | 891 | 1.73e-120 | 383 |
| MS.gene037342.t1 | AT1G09060 | 33.199 | 747 | 416 | 18 | 2 | 717 | 197 | 891 | 1.73e-120 | 383 |
| MS.gene037342.t1 | AT1G09060 | 33.467 | 747 | 414 | 19 | 2 | 717 | 211 | 905 | 3.10e-120 | 383 |
| MS.gene037342.t1 | AT1G09060 | 33.467 | 747 | 414 | 19 | 2 | 717 | 211 | 905 | 3.10e-120 | 383 |
| MS.gene037342.t1 | AT4G21430 | 33.988 | 509 | 306 | 8 | 232 | 717 | 412 | 913 | 3.48e-86 | 291 |
| MS.gene037342.t1 | AT4G21430 | 28.481 | 158 | 110 | 3 | 3 | 158 | 221 | 377 | 1.04e-12 | 72.4 |
Find 162 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATCTGTATATTCTTTAT+AGG | 0.218933 | 1.3:-77216305 | None:intergenic |
| AAGTACTTTCAGCATATATT+TGG | 0.244019 | 1.3:-77213928 | None:intergenic |
| GTCGCCCTGATTGGCTAAAT+TGG | 0.253094 | 1.3:+77216191 | MS.gene037342:CDS |
| TCACCATCACCTTCAGCTTT+TGG | 0.263787 | 1.3:-77214728 | None:intergenic |
| TGCGTTCCAGTCATGGAAAA+TGG | 0.264659 | 1.3:+77217150 | MS.gene037342:CDS |
| AATGTGCACCAATTCTTTAC+TGG | 0.265399 | 1.3:+77216157 | MS.gene037342:CDS |
| TCATCCAAACGTCTTAAATA+TGG | 0.272167 | 1.3:-77213954 | None:intergenic |
| CCTAAAACATATATTGCTTA+TGG | 0.279102 | 1.3:+77216391 | MS.gene037342:CDS |
| CGAGGGCGTGATTATCTTCA+TGG | 0.286488 | 1.3:+77214593 | MS.gene037342:CDS |
| AGTACATTGCTAACAATTAC+AGG | 0.298489 | 1.3:-77215040 | None:intergenic |
| GTTGTACCAATTGTTTAAAC+AGG | 0.300702 | 1.3:-77213492 | None:intergenic |
| TACCAAGCACAAAACACTTT+TGG | 0.300838 | 1.3:+77215129 | MS.gene037342:CDS |
| TTTAAATATTCCTCCAACTT+AGG | 0.302596 | 1.3:-77217225 | None:intergenic |
| AGTTGCAGATATCCCTAAAA+AGG | 0.306036 | 1.3:+77214337 | MS.gene037342:CDS |
| GCATACCCTGTTTAAACAAT+TGG | 0.324245 | 1.3:+77213486 | MS.gene037342:CDS |
| ATTCCTTAGACGGTGCTCTC+TGG | 0.324744 | 1.3:+77217178 | MS.gene037342:CDS |
| GTTCTTGTTTAAAGCCTGTT+AGG | 0.328431 | 1.3:+77214876 | MS.gene037342:CDS |
| CTTTCTTCAAATAAGTTAGA+AGG | 0.331972 | 1.3:-77216244 | None:intergenic |
| TGTCATTTCTCTGACATTGA+TGG | 0.335478 | 1.3:-77213418 | None:intergenic |
| TCTTCCATATTTAAGACGTT+TGG | 0.340249 | 1.3:+77213950 | MS.gene037342:CDS |
| AGGAGGCTTAAGGAGGAGTA+TGG | 0.344150 | 1.3:+77222838 | MS.gene037342:CDS |
| GGATCTGTATATTCTTTATA+GGG | 0.347461 | 1.3:-77216304 | None:intergenic |
| ATCCCAGAGAGCACCGTCTA+AGG | 0.348922 | 1.3:-77217181 | None:intergenic |
| CTTCGTGGCGGAAAGCTTCT+AGG | 0.350575 | 1.3:+77214536 | MS.gene037342:CDS |
| CACCCAGATCTTGACCATTC+AGG | 0.357316 | 1.3:-77214674 | None:intergenic |
| TATGTAATACCTTCAGATTT+CGG | 0.357408 | 1.3:-77223031 | None:intergenic |
| AGAAGCATTTCAGAGAGTTC+AGG | 0.360974 | 1.3:+77217247 | MS.gene037342:CDS |
| AAACAGCATCTCCTAGCTTC+TGG | 0.362555 | 1.3:-77222980 | None:intergenic |
| ATATCCTCTTCATTCCTAAC+AGG | 0.364490 | 1.3:-77214890 | None:intergenic |
| TGTGATTTACCGGAAGTTTA+CGG | 0.365363 | 1.3:-77224048 | None:intergenic |
| AGTAACTCAGAGATGCAATT+TGG | 0.373196 | 1.3:-77214785 | None:intergenic |
| TAACCTTGCTGTGAAGTTGC+CGG | 0.383168 | 1.3:+77216342 | MS.gene037342:CDS |
| TGAGGCCAATTTAGCCAATC+AGG | 0.389236 | 1.3:-77216196 | None:intergenic |
| AAGATAAACTCAAACTCAAT+TGG | 0.397071 | 1.3:-77214569 | None:intergenic |
| ATTCCTGAATGGTCAAGATC+TGG | 0.400760 | 1.3:+77214671 | MS.gene037342:CDS |
| GCGTTCCAGTCATGGAAAAT+GGG | 0.405689 | 1.3:+77217151 | MS.gene037342:CDS |
| GGAGCTACATGGCGATAATC+AGG | 0.407696 | 1.3:+77217062 | MS.gene037342:CDS |
| TCTGTGGACCTGTGATTTAC+CGG | 0.411222 | 1.3:-77224058 | None:intergenic |
| TATGGATTTGAGCAGGAACT+TGG | 0.416922 | 1.3:+77216409 | MS.gene037342:CDS |
| TTGTGTACCCAGTAAAGAAT+TGG | 0.418147 | 1.3:-77216165 | None:intergenic |
| AATGTACTTGAATGTACATC+TGG | 0.421952 | 1.3:+77215055 | MS.gene037342:CDS |
| CTCAACGTCATGGTCGTTGT+TGG | 0.423084 | 1.3:-77213901 | None:intergenic |
| ACACAAAAGGTCGCCCTGAT+TGG | 0.425060 | 1.3:+77216182 | MS.gene037342:CDS |
| CGAGCATAAGAGGAGGCTTA+AGG | 0.430431 | 1.3:+77222828 | MS.gene037342:CDS |
| ATACCTTCAGATTTCGGACT+TGG | 0.436051 | 1.3:-77223025 | None:intergenic |
| CACAAAATCAAGAGCAACCT+TGG | 0.439982 | 1.3:-77223981 | None:intergenic |
| TTCAACGTCACTGGAGCAAA+GGG | 0.444849 | 1.3:+77215014 | MS.gene037342:CDS |
| AATGTACATCTGGTTTAAGC+TGG | 0.447849 | 1.3:+77215065 | MS.gene037342:CDS |
| ATTTGACTATCGAGCATAAG+AGG | 0.450485 | 1.3:+77222818 | MS.gene037342:CDS |
| TTCTTTACTGGGTACACAAA+AGG | 0.450970 | 1.3:+77216169 | MS.gene037342:CDS |
| TCAAATAAAAGTGCTGATCA+TGG | 0.451104 | 1.3:-77222801 | None:intergenic |
| CAGGTCCACAGAGGACAAAT+TGG | 0.454737 | 1.3:+77224069 | MS.gene037342:CDS |
| AAGCTATTGATTGCTTAGAT+TGG | 0.456101 | 1.3:+77215158 | MS.gene037342:CDS |
| GCTTGATCTGGTGGAGAAGT+TGG | 0.461045 | 1.3:+77224887 | MS.gene037342:CDS |
| TATATATGCTATGCTTGATC+TGG | 0.462454 | 1.3:+77224875 | MS.gene037342:CDS |
| GAGAGAGGATGTTCCTAAGT+TGG | 0.464977 | 1.3:+77217212 | MS.gene037342:CDS |
| TGATTGGCTAAATTGGCCTC+AGG | 0.470753 | 1.3:+77216198 | MS.gene037342:CDS |
| CTTTGTTGCTGTGAGCTTCG+TGG | 0.470782 | 1.3:+77214521 | MS.gene037342:CDS |
| TTCCTTAGACGGTGCTCTCT+GGG | 0.471924 | 1.3:+77217179 | MS.gene037342:CDS |
| GTCAGAGAAATGACAAGGGC+AGG | 0.483009 | 1.3:+77213426 | MS.gene037342:CDS |
| TCTTGACCATTCAGGAATCT+CGG | 0.486716 | 1.3:-77214666 | None:intergenic |
| GAAGTGTGCTTCTCAGTTCA+AGG | 0.488983 | 1.3:-77214760 | None:intergenic |
| ATGTGCACCAATTCTTTACT+GGG | 0.492244 | 1.3:+77216158 | MS.gene037342:CDS |
| ATTTGAGCAGGAACTTGGGC+GGG | 0.495309 | 1.3:+77216414 | MS.gene037342:CDS |
| ACGTTTGGATGAAGAGCAAA+TGG | 0.496696 | 1.3:+77213965 | MS.gene037342:CDS |
| TGAAGAGCAAATGGCTGAGA+AGG | 0.497473 | 1.3:+77213974 | MS.gene037342:CDS |
| ACAGTATAAAATGTTATCAC+TGG | 0.497517 | 1.3:-77214951 | None:intergenic |
| TATTGCTTATGGATTTGAGC+AGG | 0.503016 | 1.3:+77216402 | MS.gene037342:CDS |
| CTTGACCATTCAGGAATCTC+GGG | 0.507043 | 1.3:-77214665 | None:intergenic |
| AGAGGAATTCCGTAAACTTC+CGG | 0.508664 | 1.3:+77224039 | MS.gene037342:CDS |
| TGTATATTCTTTATAGGGCA+AGG | 0.509994 | 1.3:-77216299 | None:intergenic |
| TTATGTAGATTTACAGCCCT+GGG | 0.513523 | 1.3:-77214974 | None:intergenic |
| CTGACATTGATGGCACATCA+AGG | 0.514049 | 1.3:-77213408 | None:intergenic |
| ACCATTCAGGAATCTCGGGC+AGG | 0.514330 | 1.3:-77214661 | None:intergenic |
| GCGATCATCTGTACTTATCA+AGG | 0.516406 | 1.3:+77213776 | MS.gene037342:CDS |
| GGCTGTAAATCTACATAATG+AGG | 0.517325 | 1.3:+77214979 | MS.gene037342:CDS |
| TTTCAACGTCACTGGAGCAA+AGG | 0.524189 | 1.3:+77215013 | MS.gene037342:CDS |
| TTTGAGCAGGAACTTGGGCG+GGG | 0.525966 | 1.3:+77216415 | MS.gene037342:CDS |
| TGAATTATCAAGCATGATAG+TGG | 0.526520 | 1.3:-77217094 | None:intergenic |
| ATATGCTATGCTTGATCTGG+TGG | 0.530201 | 1.3:+77224878 | MS.gene037342:CDS |
| GACTTGTAGGAATTGAACCT+TGG | 0.533351 | 1.3:+77222949 | MS.gene037342:intron |
| TCTGGCTTTAGAACATCATC+CGG | 0.535804 | 1.3:-77216361 | None:intergenic |
| ATTATGTAGATTTACAGCCC+TGG | 0.540030 | 1.3:-77214975 | None:intergenic |
| ACTTGGTGCGGACAACCAGC+TGG | 0.541187 | 1.3:-77223008 | None:intergenic |
| TTCCTGAATGGTCAAGATCT+GGG | 0.542203 | 1.3:+77214672 | MS.gene037342:CDS |
| ATAAAAGTGCTGATCATGGA+TGG | 0.542431 | 1.3:-77222797 | None:intergenic |
| GCACCGTGAGCAAGACAAGA+GGG | 0.549677 | 1.3:+77217041 | MS.gene037342:CDS |
| AACTCAGAGATGCAATTTGG+TGG | 0.552022 | 1.3:-77214782 | None:intergenic |
| TCAGATGCACAAAATGCAAA+CGG | 0.552047 | 1.3:+77213453 | MS.gene037342:CDS |
| GCTGAAGGTGATGGTGATCA+TGG | 0.557225 | 1.3:+77214734 | MS.gene037342:CDS |
| AAGGTATCCTCACTTGAAAG+AGG | 0.562825 | 1.3:+77213695 | MS.gene037342:intron |
| TACCTCCAATTTGTCCTCTG+TGG | 0.565315 | 1.3:-77224074 | None:intergenic |
| ATGTACATCTGGTTTAAGCT+GGG | 0.567172 | 1.3:+77215066 | MS.gene037342:CDS |
| ATGGATTTGAGCAGGAACTT+GGG | 0.568762 | 1.3:+77216410 | MS.gene037342:CDS |
| TTCAGATTTCGGACTTGGTG+CGG | 0.569534 | 1.3:-77223020 | None:intergenic |
| GCTCCCTCTTGTCTTGCTCA+CGG | 0.570052 | 1.3:-77217044 | None:intergenic |
| GATTTGAGCAGGAACTTGGG+CGG | 0.570180 | 1.3:+77216413 | MS.gene037342:CDS |
| CCCTGCCCGAGATTCCTGAA+TGG | 0.574410 | 1.3:+77214660 | MS.gene037342:CDS |
| GTAAACTTCCGGTAAATCAC+AGG | 0.577040 | 1.3:+77224050 | MS.gene037342:CDS |
| GAGTTTGAGTTTATCTTCCG+AGG | 0.578175 | 1.3:+77214575 | MS.gene037342:CDS |
| CCACTGCTCTCCTTTAAAGC+AGG | 0.579600 | 1.3:+77217275 | MS.gene037342:CDS |
| CACGAAGCTCACAGCAACAA+AGG | 0.579879 | 1.3:-77214520 | None:intergenic |
| GAATATACAGATCCTTTCAA+AGG | 0.581672 | 1.3:+77216313 | MS.gene037342:CDS |
| AGGTTAAGAACACCTTTGAA+AGG | 0.581830 | 1.3:-77216325 | None:intergenic |
| CAAGACAAGAGGGAGCTACA+TGG | 0.584081 | 1.3:+77217051 | MS.gene037342:CDS |
| CGTTCCAGTCATGGAAAATG+GGG | 0.586219 | 1.3:+77217152 | MS.gene037342:CDS |
| TCTTTCAATTTCAAAACCTG+AGG | 0.586296 | 1.3:-77216214 | None:intergenic |
| TCTTCAAATAAGTTAGAAGG+AGG | 0.588526 | 1.3:-77216241 | None:intergenic |
| GCTTGGTATTGCTTATCTGA+CGG | 0.590810 | 1.3:-77215114 | None:intergenic |
| GCTGGGAACCGCTTGTCATG+TGG | 0.594440 | 1.3:+77215083 | MS.gene037342:CDS |
| AGTTTGAGTTTATCTTCCGA+GGG | 0.594469 | 1.3:+77214576 | MS.gene037342:CDS |
| AGCACCGTGAGCAAGACAAG+AGG | 0.602066 | 1.3:+77217040 | MS.gene037342:CDS |
| TGATGTTCTAAAGCCAGACA+TGG | 0.603316 | 1.3:+77216366 | MS.gene037342:CDS |
| TAAAAGTGCTGATCATGGAT+GGG | 0.604516 | 1.3:-77222796 | None:intergenic |
| CGAGTGCTTTCGTTTGACAG+AGG | 0.605461 | 1.3:+77224021 | MS.gene037342:CDS |
| GTCCACAGAGGACAAATTGG+AGG | 0.610429 | 1.3:+77224072 | MS.gene037342:CDS |
| AAAGCCTGTTAGGAATGAAG+AGG | 0.611246 | 1.3:+77214886 | MS.gene037342:CDS |
| ATTCCCTGTCCAAAAGCTGA+AGG | 0.611859 | 1.3:+77214719 | MS.gene037342:CDS |
| ATTTGGAGAGCTCAACGTCA+TGG | 0.614643 | 1.3:-77213911 | None:intergenic |
| CCTGCTTTAAAGGAGAGCAG+TGG | 0.616732 | 1.3:-77217275 | None:intergenic |
| TGGAGAAGTTGGAGGAAGCA+AGG | 0.617868 | 1.3:+77224898 | MS.gene037342:CDS |
| GGGTGGCATGCAAATGATGA+TGG | 0.617923 | 1.3:+77214692 | MS.gene037342:CDS |
| GAGATAGAAGCAAAGAGACA+AGG | 0.619116 | 1.3:+77213996 | MS.gene037342:CDS |
| TATACACAATAACACAAGGA+AGG | 0.620376 | 1.3:+77214910 | MS.gene037342:CDS |
| CCATTCAGGAATCTCGGGCA+GGG | 0.621141 | 1.3:-77214660 | None:intergenic |
| TCGGGCAGGGCAGCAGCACG+AGG | 0.621316 | 1.3:-77214647 | None:intergenic |
| TTCATGGTGGAAAAGAAGAG+AGG | 0.621997 | 1.3:+77214609 | MS.gene037342:CDS |
| TTGCAATTACCACAGCACAC+TGG | 0.624403 | 1.3:-77213738 | None:intergenic |
| TCAGAGAAATGACAAGGGCA+GGG | 0.624776 | 1.3:+77213427 | MS.gene037342:CDS |
| TCATGGTGGAAAAGAAGAGA+GGG | 0.625856 | 1.3:+77214610 | MS.gene037342:CDS |
| GAGGCCAATTTAGCCAATCA+GGG | 0.627515 | 1.3:-77216195 | None:intergenic |
| TGAAGTGAAATTGAAATCTG+AGG | 0.628039 | 1.3:+77216987 | MS.gene037342:CDS |
| TTGTACCAATTGTTTAAACA+GGG | 0.628105 | 1.3:-77213491 | None:intergenic |
| GAAGTGAAATTGAAATCTGA+GGG | 0.629648 | 1.3:+77216988 | MS.gene037342:CDS |
| CATGAAGATAATCACGCCCT+CGG | 0.633290 | 1.3:-77214592 | None:intergenic |
| TGTCCAAAAGCTGAAGGTGA+TGG | 0.639166 | 1.3:+77214725 | MS.gene037342:CDS |
| AGAGGATGTTCCTAAGTTGG+AGG | 0.639258 | 1.3:+77217215 | MS.gene037342:CDS |
| GCATAAGAGGAGGCTTAAGG+AGG | 0.640950 | 1.3:+77222831 | MS.gene037342:CDS |
| CTACATGGCGATAATCAGGA+TGG | 0.644609 | 1.3:+77217066 | MS.gene037342:CDS |
| GAGGCATGTCCAGTGTGCTG+TGG | 0.646992 | 1.3:+77213729 | MS.gene037342:CDS |
| TGATCTGGTGGAGAAGTTGG+AGG | 0.647545 | 1.3:+77224890 | MS.gene037342:CDS |
| CAATCAACAGTGGATCGAAG+AGG | 0.650173 | 1.3:+77213382 | None:intergenic |
| TTTGTGTCTCCTGAAAATGT+TGG | 0.652340 | 1.3:+77223998 | MS.gene037342:CDS |
| TGTTGCTGTGAGCTTCGTGG+CGG | 0.653472 | 1.3:+77214524 | MS.gene037342:CDS |
| TCAATGTCAGAGAAATGACA+AGG | 0.658738 | 1.3:+77213421 | MS.gene037342:CDS |
| GCACCAAGTCCGAAATCTGA+AGG | 0.659826 | 1.3:+77223022 | MS.gene037342:CDS |
| GATGTTCTAAAGCCAGACAT+GGG | 0.664375 | 1.3:+77216367 | MS.gene037342:CDS |
| AAAAGTGCTGATCATGGATG+GGG | 0.670907 | 1.3:-77222795 | None:intergenic |
| CATCCGGCAACTTCACAGCA+AGG | 0.672248 | 1.3:-77216345 | None:intergenic |
| AATGCACGCCACATGACAAG+CGG | 0.682465 | 1.3:-77215091 | None:intergenic |
| GAAAGAGGAGAAAATTGCTG+AGG | 0.682762 | 1.3:+77213710 | MS.gene037342:CDS |
| TGATTGCTTAGATTGGTGCG+AGG | 0.685495 | 1.3:+77215165 | MS.gene037342:CDS |
| TGACTATCGAGCATAAGAGG+AGG | 0.692197 | 1.3:+77222821 | MS.gene037342:CDS |
| GGGCGTGATTATCTTCATGG+TGG | 0.696150 | 1.3:+77214596 | MS.gene037342:CDS |
| AGGATATACACAATAACACA+AGG | 0.701108 | 1.3:+77214906 | MS.gene037342:CDS |
| ATGAACTCAGCACAATGACG+AGG | 0.704061 | 1.3:-77216271 | None:intergenic |
| CGTGGCGGAAAGCTTCTAGG+TGG | 0.704429 | 1.3:+77214539 | MS.gene037342:CDS |
| TCAACGTCACTGGAGCAAAG+GGG | 0.706731 | 1.3:+77215015 | MS.gene037342:CDS |
| CAATGTCAGAGAAATGACAA+GGG | 0.723230 | 1.3:+77213422 | MS.gene037342:CDS |
| GTTCCAGTCATGGAAAATGG+GGG | 0.732208 | 1.3:+77217153 | MS.gene037342:CDS |
| CTGAATGGTCAAGATCTGGG+TGG | 0.752133 | 1.3:+77214675 | MS.gene037342:CDS |
| GGTAAATCACAGGTCCACAG+AGG | 0.770669 | 1.3:+77224060 | MS.gene037342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 77213392 | 77224919 | 77213392 | ID=MS.gene037342 |
| chr1.3 | mRNA | 77213392 | 77224919 | 77213392 | ID=MS.gene037342.t1;Parent=MS.gene037342 |
| chr1.3 | exon | 77213392 | 77213507 | 77213392 | ID=MS.gene037342.t1.exon1;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77213392 | 77213507 | 77213392 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| chr1.3 | exon | 77213698 | 77213797 | 77213698 | ID=MS.gene037342.t1.exon2;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77213698 | 77213797 | 77213698 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| chr1.3 | exon | 77213879 | 77214017 | 77213879 | ID=MS.gene037342.t1.exon3;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77213879 | 77214017 | 77213879 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| chr1.3 | exon | 77214309 | 77214372 | 77214309 | ID=MS.gene037342.t1.exon4;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77214309 | 77214372 | 77214309 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| chr1.3 | exon | 77214451 | 77215186 | 77214451 | ID=MS.gene037342.t1.exon5;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77214451 | 77215186 | 77214451 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| chr1.3 | exon | 77216148 | 77216477 | 77216148 | ID=MS.gene037342.t1.exon6;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77216148 | 77216477 | 77216148 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| chr1.3 | exon | 77216964 | 77217296 | 77216964 | ID=MS.gene037342.t1.exon7;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77216964 | 77217296 | 77216964 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| chr1.3 | exon | 77222787 | 77222859 | 77222787 | ID=MS.gene037342.t1.exon8;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77222787 | 77222859 | 77222787 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| chr1.3 | exon | 77222958 | 77223043 | 77222958 | ID=MS.gene037342.t1.exon9;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77222958 | 77223043 | 77222958 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| chr1.3 | exon | 77223974 | 77224093 | 77223974 | ID=MS.gene037342.t1.exon10;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77223974 | 77224093 | 77223974 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| chr1.3 | exon | 77224861 | 77224919 | 77224861 | ID=MS.gene037342.t1.exon11;Parent=MS.gene037342.t1 |
| chr1.3 | CDS | 77224861 | 77224919 | 77224861 | ID=cds.MS.gene037342.t1;Parent=MS.gene037342.t1 |
| Gene Sequence |
| Protein sequence |